RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780968|ref|YP_003065381.1| hypothetical protein
CLIBASIA_04345 [Candidatus Liberibacter asiaticus str. psy62]
(106 letters)
>gnl|CDD|30626 COG0278, COG0278, Glutaredoxin-related protein [Posttranslational
modification, protein turnover, chaperones].
Length = 105
Score = 155 bits (393), Expect = 3e-39
Identities = 58/102 (56%), Positives = 74/102 (72%), Gaps = 1/102 (0%)
Query: 2 NSSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLG-VSYKGIDVLADDALR 60
+ IQ +IK+N VVLFMKGTP P+CGFS + VQ+L + G V + +DVL D +R
Sbjct: 1 MMEILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIR 60
Query: 61 QSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEILS 102
Q +KEYSNWPT PQLYV G+F+GGCDIV EM++SGEL +L
Sbjct: 61 QGLKEYSNWPTFPQLYVNGEFVGGCDIVREMYQSGELQTLLK 102
>gnl|CDD|48577 cd03028, GRX_PICOT_like, Glutaredoxin (GRX) family,
PKC-interacting cousin of TRX (PICOT)-like subfamily;
composed of PICOT and GRX-PICOT-like proteins. The
non-PICOT members of this family contain only the
GRX-like domain, whereas PICOT contains an N-terminal
TRX-like domain followed by one to three GRX-like
domains. It is interesting to note that PICOT from
plants contain three repeats of the GRX-like domain,
metazoan proteins (except for insect) have two repeats,
while fungal sequences contain only one copy of the
domain. PICOT is a protein that interacts with protein
kinase C (PKC) theta, a calcium independent PKC isoform
selectively expressed in skeletal muscle and T
lymphocytes. PICOT inhibits the activation of c-Jun
N-terminal kinase and the transcription factors, AP-1
and NF-kB, induced by PKC theta or T-cell activating
stimuli. Both GRX and TRX domains of PICOT are required
for its activity. Characterized non-PICOT members of
this family include CXIP1, a CAX-interacting protein in
Arabidopsis thaliana, and PfGLP-1, a GRX-like protein
from Plasmodium falciparum..
Length = 90
Score = 153 bits (389), Expect = 8e-39
Identities = 59/89 (66%), Positives = 70/89 (78%)
Query: 9 IQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSN 68
I+ IK+N VVLFMKGTP PRCGFS KVVQ+L+ LGV + D+L D+ +RQ +KEYSN
Sbjct: 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSN 60
Query: 69 WPTIPQLYVKGDFIGGCDIVCEMFESGEL 97
WPT PQLYV G+ +GGCDIV EM ESGEL
Sbjct: 61 WPTFPQLYVNGELVGGCDIVKEMHESGEL 89
>gnl|CDD|36129 KOG0911, KOG0911, KOG0911, Glutaredoxin-related protein
[Posttranslational modification, protein turnover,
chaperones].
Length = 227
Score = 135 bits (340), Expect = 3e-33
Identities = 52/98 (53%), Positives = 70/98 (71%)
Query: 4 SVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSI 63
+++ ++ +K V+LFMKGTP P+CGFS ++V +L S V+Y DVL D+ LRQ +
Sbjct: 127 DLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGL 186
Query: 64 KEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
KE+S+WPT PQLYVKG+FIGG DI+ EM E GEL L
Sbjct: 187 KEFSDWPTFPQLYVKGEFIGGLDILKEMHEKGELVYTL 224
>gnl|CDD|48495 cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX,
approximately 10 kDa in size, and proteins containing a
GRX or GRX-like domain. GRX is a glutathione (GSH)
dependent reductase, catalyzing the disulfide reduction
of target proteins such as ribonucleotide reductase. It
contains a redox active CXXC motif in a TRX fold and
uses a similar dithiol mechanism employed by TRXs for
intramolecular disulfide bond reduction of protein
substrates. Unlike TRX, GRX has preference for mixed
GSH disulfide substrates, in which it uses a monothiol
mechanism where only the N-terminal cysteine is
required. The flow of reducing equivalents in the GRX
system goes from NADPH -> GSH reductase -> GSH -> GRX
-> protein substrates. By altering the redox state of
target proteins, GRX is involved in many cellular
functions including DNA synthesis, signal transduction
and the defense against oxidative stress. Different
classes are known including human GRX1 and GRX2, as
well as E. coli GRX1 and GRX3, which are members of
this family. E. coli GRX2, however, is a 24-kDa protein
that belongs to the GSH S-transferase (GST) family..
Length = 72
Score = 88.3 bits (219), Expect = 4e-19
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 5/76 (6%)
Query: 18 VVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLYV 77
VV+F K T C + + ++L+SLG+ ++ ID+L D LR+ +KE S WPT+PQ+++
Sbjct: 2 VVVFSKST-----CPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFI 56
Query: 78 KGDFIGGCDIVCEMFE 93
G+FIGG D + + E
Sbjct: 57 NGEFIGGYDDLKALHE 72
>gnl|CDD|144161 pfam00462, Glutaredoxin, Glutaredoxin.
Length = 60
Score = 82.1 bits (204), Expect = 3e-17
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 18 VVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLYV 77
VVLF K P C F + ++L SLGV ++ IDV D +R+ +KE S W T+PQ+++
Sbjct: 1 VVLFTK-----PTCPFCKRAKRLLKSLGVKFEEIDVDEDPEIREELKELSGWRTVPQVFI 55
Query: 78 KGDFI 82
G+ I
Sbjct: 56 DGEHI 60
>gnl|CDD|48634 cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) family, GRX human
class 1 and 2 (h_1_2)-like subfamily; composed of
proteins similar to human GRXs, approximately 10 kDa in
size, and proteins containing a GRX or GRX-like domain.
GRX is a glutathione (GSH) dependent reductase,
catalyzing the disulfide reduction of target proteins
such as ribonucleotide reductase. It contains a redox
active CXXC motif in a TRX fold and uses a similar
dithiol mechanism employed by TRXs for intramolecular
disulfide bond reduction of protein substrates. Unlike
TRX, GRX has preference for mixed GSH disulfide
substrates, in which it uses a monothiol mechanism where
only the N-terminal cysteine is required. The flow of
reducing equivalents in the GRX system goes from NADPH
-> GSH reductase -> GSH -> GRX -> protein substrates. By
altering the redox state of target proteins, GRX is
involved in many cellular functions including DNA
synthesis, signal transduction and the defense against
oxidative stress. Different classes are known including
human GRX1 and GRX2, which are members of this
subfamily. Also included in this subfamily are the
N-terminal GRX domains of proteins similar to human
thioredoxin reductase 1 and 3..
Length = 82
Score = 53.2 bits (128), Expect = 2e-08
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 18 VVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYK--GIDVLAD-DALRQSIKEYSNWPTIPQ 74
VV+F K C + + +L LGV +D D ++ ++E + T+P
Sbjct: 2 VVVFSKSY-----CPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPN 56
Query: 75 LYVKGDFIGGCDIVCEMFESGELHEI 100
+++ G FIGGCD + + +SG+L ++
Sbjct: 57 VFIGGKFIGGCDDLMALHKSGKLVKL 82
>gnl|CDD|36963 KOG1752, KOG1752, KOG1752, Glutaredoxin and related proteins
[Posttranslational modification, protein turnover,
chaperones].
Length = 104
Score = 51.8 bits (124), Expect = 4e-08
Identities = 26/96 (27%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 9 IQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLAD---DALRQSIKE 65
++ I +N VV+F K + C + + ++L LGV+ K +++ D +++++K+
Sbjct: 7 VRKMISENPVVIFSKSS-----CPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKK 61
Query: 66 YSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
+ T+P +++ G FIGG + + +SGEL +L
Sbjct: 62 LTGQRTVPNVFIGGKFIGGASDLMALHKSGELVPLL 97
>gnl|CDD|48633 cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX
bacterial class 1 and 3 (b_1_3)-like subfamily;
composed of bacterial GRXs, approximately 10 kDa in
size, and proteins containing a GRX or GRX-like domain.
GRX is a glutathione (GSH) dependent reductase,
catalyzing the disulfide reduction of target proteins
such as ribonucleotide reductase. It contains a redox
active CXXC motif in a TRX fold and uses a similar
dithiol mechanism employed by TRXs for intramolecular
disulfide bond reduction of protein substrates. Unlike
TRX, GRX has preference for mixed GSH disulfide
substrates, in which it uses a monothiol mechanism
where only the N-terminal cysteine is required. The
flow of reducing equivalents in the GRX system goes
from NADPH -> GSH reductase -> GSH -> GRX -> protein
substrates. By altering the redox state of target
proteins, GRX is involved in many cellular functions
including DNA synthesis, signal transduction and the
defense against oxidative stress. Different classes are
known including E. coli GRX1 and GRX3, which are
members of this subfamily..
Length = 75
Score = 50.6 bits (121), Expect = 9e-08
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSN-WPTIPQLYVKGDFIGGC 85
T P C + + +LD GV Y+ IDV D ALR+ + S T+PQ+++ IGGC
Sbjct: 6 TKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGC 65
Query: 86 D 86
D
Sbjct: 66 D 66
>gnl|CDD|48580 cd03031, GRX_GRX_like, Glutaredoxin (GRX) family, GRX-like domain
containing protein subfamily; composed of
uncharacterized eukaryotic proteins containing a
GRX-like domain having only one conserved cysteine,
aligning to the C-terminal cysteine of the CXXC motif of
GRXs. This subfamily is predominantly composed of plant
proteins. GRX is a glutathione (GSH) dependent
reductase, catalyzing the disulfide reduction of target
proteins via a redox active CXXC motif using a similar
dithiol mechanism employed by TRXs. GRX has preference
for mixed GSH disulfide substrates, in which it uses a
monothiol mechanism where only the N-terminal cysteine
is required. Proteins containing only the C-terminal
cysteine are generally redox inactive..
Length = 147
Score = 50.2 bits (120), Expect = 1e-07
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 37 VVQVLDSLGVSYKGIDVLAD----DALRQSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMF 92
V +L+S V + DV D + LR+ + ++P+++V G ++GG + V +
Sbjct: 22 VRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRLN 81
Query: 93 ESGELHEIL 101
ESGEL ++L
Sbjct: 82 ESGELRKLL 90
>gnl|CDD|38035 KOG2824, KOG2824, KOG2824, Glutaredoxin-related protein
[Posttranslational modification, protein turnover,
chaperones].
Length = 281
Score = 45.4 bits (107), Expect = 3e-06
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 37 VVQVLDSLGVSYKGIDVLADDALRQSIKE----YSNWPTIPQLYVKGDFIGGCDIVCEMF 92
V +L+S V DV D R+ ++E ++P+++VKG +IGG + V +
Sbjct: 153 VRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRLN 212
Query: 93 ESGELHEILS 102
E G+L ++L
Sbjct: 213 EEGKLGKLLK 222
>gnl|CDD|31039 COG0695, GrxC, Glutaredoxin and related proteins
[Posttranslational modification, protein turnover,
chaperones].
Length = 80
Score = 43.8 bits (103), Expect = 1e-05
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSYKGIDVLADD--ALRQSIKEYSNWPTIPQLYVKGDFIGG 84
T P C + + ++LD GV Y+ IDV D+ R+ +K T+PQ+++ G +GG
Sbjct: 7 TKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGG 66
Query: 85 CDIVCEMFESGEL 97
CD + + G+L
Sbjct: 67 CDDLDALEAKGKL 79
>gnl|CDD|48578 cd03029, GRX_hybridPRX5, Glutaredoxin (GRX) family, PRX5 hybrid
subfamily; composed of hybrid proteins containing
peroxiredoxin (PRX) and GRX domains, which is found in
some pathogenic bacteria and cyanobacteria. PRXs are
thiol-specific antioxidant (TSA) proteins that confer a
protective antioxidant role in cells through their
peroxidase activity in which hydrogen peroxide,
peroxynitrate, and organic hydroperoxides are reduced
and detoxified using reducing equivalents derived from
either thioredoxin, glutathione, trypanothione and
AhpF. GRX is a glutathione (GSH) dependent reductase,
catalyzing the disulfide reduction of target proteins.
PRX-GRX hybrid proteins from Haemophilus influenza and
Neisseria meningitis exhibit GSH-dependent peroxidase
activity. The flow of reducing equivalents in the
catalytic cycle of the hybrid protein goes from NADPH
-> GSH reductase -> GSH -> GRX domain of hybrid -> PRX
domain of hybrid -> peroxide substrate..
Length = 72
Score = 41.9 bits (98), Expect = 4e-05
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 18 VVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLYV 77
V LF T P C F + L G+SY+ I L D +S++ + T+PQ+++
Sbjct: 3 VSLF-----TKPGCPFCARAKAALQENGISYEEI-PLGKDITGRSLRAVTGAMTVPQVFI 56
Query: 78 KGDFIGGCDIVCEMF 92
G+ IGG D + + F
Sbjct: 57 DGELIGGSDDLEKYF 71
>gnl|CDD|48525 cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small
monomeric protein with a conserved redox active CXXC
motif within a TRX fold, characterized by a glutaredoxin
(GRX)-like sequence and TRX-like activity profile. In
vitro, it displays protein disulfide reductase activity
that is dependent on TRX reductase, not glutathione
(GSH). It is part of the NrdHIEF operon, where NrdEF
codes for class Ib ribonucleotide reductase (RNR-Ib), an
efficient enzyme at low oxygen levels. Under these
conditions when GSH is mostly conjugated to spermidine,
NrdH can still function and act as a hydrogen donor for
RNR-Ib. It has been suggested that the NrdHEF system may
be the oldest RNR reducing system, capable of
functioning in a microaerophilic environment, where GSH
was not yet available. NrdH from Corynebacterium
ammoniagenes can form domain-swapped dimers, although it
is unknown if this happens in vivo. Domain-swapped
dimerization, which results in the blocking of the TRX
reductase binding site, could be a mechanism for
regulating the oxidation state of the protein..
Length = 73
Score = 37.1 bits (86), Expect = 0.001
Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGGCD 86
T P C + + LD G+ ++ +DV D + +K+ + + ++P + + + + G
Sbjct: 6 TKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSG-- 63
Query: 87 IVCEMFESGELHEIL 101
F +L +L
Sbjct: 64 -----FRPDKLRALL 73
>gnl|CDD|38239 KOG3029, KOG3029, KOG3029, Glutathione S-transferase-related
protein [General function prediction only].
Length = 370
Score = 34.3 bits (78), Expect = 0.008
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 17 DVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLY 76
D+VL+ T C F KV LD G+SY ++V + LRQ IK +S++ +P L
Sbjct: 90 DLVLYQYET-----CPFCCKVRAFLDYHGISYAVVEV--NPVLRQEIK-WSSYKKVPILL 141
Query: 77 VKGD 80
++G+
Sbjct: 142 IRGE 145
>gnl|CDD|147198 pfam04908, SH3BGR, SH3-binding, glutamic acid-rich protein.
Length = 92
Score = 32.1 bits (73), Expect = 0.031
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 36 KVVQVLDSLGVSYKGIDVLADDALRQSIKEYSN--WPTIPQLYVKGDFIGGCDIVCEMFE 93
+V+ +LD+ + + +D+ D+ R+ ++E P PQ++ + + G D E E
Sbjct: 22 RVLMILDANKIPFDEVDITKDEEQRRWMRENPPNGAPLPPQIFNEDQYCGDYDAFFEAVE 81
Query: 94 SGELHEIL 101
+ L+E L
Sbjct: 82 ANTLYEFL 89
>gnl|CDD|48579 cd03030, GRX_SH3BGR, Glutaredoxin (GRX) family, SH3BGR (SH3 domain
binding glutamic acid-rich protein) subfamily; a
recently-identified subfamily composed of SH3BGR and
similar proteins possessing significant sequence
similarity to GRX, but without a redox active CXXC
motif. The SH3BGR gene was cloned in an effort to
identify genes mapping to chromosome 21, which could be
involved in the pathogenesis of congenital heart disease
affecting Down syndrome newborns. Several human
SH3BGR-like (SH3BGRL) genes have been identified since,
mapping to different locations in the chromosome. Of
these, SH3BGRL3 was identified as a tumor necrosis
factor (TNF) alpha inhibitory protein and was also named
TIP-B1. Upregulation of expression of SH3BGRL3 is
associated with differentiation. It has been suggested
that it functions as a regulator of
differentiation-related signal transduction pathways..
Length = 92
Score = 30.6 bits (69), Expect = 0.11
Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 37 VVQVLDSLGVSYKGIDVLADDALRQS----IKEYSNWPTIPQLYVKGDFIGGCDIVCEMF 92
V+ L++ + ++ +D+ ++ RQ + + P PQ++ ++ G + E
Sbjct: 22 VLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81
Query: 93 ESGELHEIL 101
E+ L E L
Sbjct: 82 ENNTLEEFL 90
>gnl|CDD|48589 cd03040, GST_N_mPGES2, GST_N family; microsomal Prostaglandin E
synthase Type 2 (mPGES2) subfamily; mPGES2 is a
membrane-anchored dimeric protein containing a CXXC
motif which catalyzes the isomerization of PGH2 to
PGE2. Unlike cytosolic PGE synthase (cPGES) and
microsomal PGES Type 1 (mPGES1), mPGES2 does not
require glutathione (GSH) for its activity, although
its catalytic rate is increased two- to four-fold in
the presence of DTT, GSH or other thiol compounds. PGE2
is widely distributed in various tissues and is
implicated in the sleep/wake cycle,
relaxation/contraction of smooth muscle, excretion of
sodium ions, maintenance of body temperature and
mediation of inflammation. mPGES2 contains an
N-terminal hydrophobic domain which is membrane
associated, and a C-terminal soluble domain with a
GST-like structure..
Length = 77
Score = 28.3 bits (63), Expect = 0.47
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 31 CGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLYVKGD 80
C F KV LD G+ Y+ ++V + R+ IK +S++ +P L V+
Sbjct: 10 CPFCCKVRAFLDYHGIPYEVVEV--NPVSRKEIK-WSSYKKVPILRVESG 56
>gnl|CDD|73373 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl
diphosphate isomerase type 2 (IDI-2) FMN-binding domain.
Two types of IDIs have been characterized at present.
The long known IDI-1 is only dependent on divalent
metals for activity, whereas IDI-2 requires a metal, FMN
and NADPH. IDI-2 catalyzes the interconversion of
isopentenyl diphosphate (IPP) and dimethylallyl
diphosphate (DMAPP) in the mevalonate pathway..
Length = 326
Score = 25.8 bits (57), Expect = 2.5
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 31 CGFSGKVVQVLDSLGVSYKGIDV 53
G S + + L GV IDV
Sbjct: 188 FGISRETAKRLADAGVKA--IDV 208
>gnl|CDD|37640 KOG2429, KOG2429, KOG2429, Glycosyl hydrolase, family 47
[Carbohydrate transport and metabolism].
Length = 622
Score = 25.6 bits (56), Expect = 2.7
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 33 FSGKV-VQVLDSLGVSYKGIDVLA---DDALRQSIKEYSNWPT---IPQLY 76
SG V + DSL + G+ VLA DDA+R + +S W +P+ Y
Sbjct: 306 DSGSVSLPWFDSLQAFWPGLQVLAGDVDDAIRTHLMYFSVWKKYGFLPERY 356
>gnl|CDD|146701 pfam04199, Cyclase, Putative cyclase. Proteins in this family are
thought to be cyclase enzymes. They are found in
proteins involved in antibiotic synthesis. However they
are also found in organisms that do not make antibiotics
pointing to a wider role for these proteins. The
proteins contain a conserved motif HXGTHXDXPXH that is
likely to form part of the active site.
Length = 162
Score = 25.8 bits (57), Expect = 2.8
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 10 QNEIKKNDVVLF------MKGTPTSPR--CGFSGKVVQVLDSLGVSYKGIDVLADDAL 59
IK D+VL GTP R G S + Q L GV GID + D
Sbjct: 104 GGTIKPGDIVLIRTGWDKRWGTPEYYRNHPGLSLEAAQWLVERGVKAVGIDTPSLDRP 161
>gnl|CDD|146541 pfam03960, ArsC, ArsC family. This family is related to
glutaredoxins pfam00462.
Length = 111
Score = 25.6 bits (57), Expect = 2.8
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSYKGIDVLAD 56
SP C K + L+ G+ Y+ ID L
Sbjct: 2 GSPNCDTCRKALAWLEEHGIEYQEIDYLET 31
>gnl|CDD|48585 cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown
subfamily; uncharacterized proteins containing a CXXC
motif with similarity to thioredoxin (TRX)-fold arsenic
reductases, ArsC. Proteins containing a redox active
CXXC motif like TRX and glutaredoxin (GRX) function as
protein disulfide oxidoreductases, altering the redox
state of target proteins via the reversible oxidation
of the active site dithiol. ArsC catalyzes the
reduction of arsenate [As(V)] to arsenite [As(III)],
using reducing equivalents derived from glutathione via
GRX, through a single catalytic cysteine..
Length = 111
Score = 25.6 bits (56), Expect = 3.2
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 29 PRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSN 68
P+C K + LD GV Y ID++ + ++ +K++
Sbjct: 7 PKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLE 46
>gnl|CDD|35411 KOG0190, KOG0190, KOG0190, Protein disulfide isomerase (prolyl
4-hydroxylase beta subunit) [Posttranslational
modification, protein turnover, chaperones].
Length = 493
Score = 24.5 bits (53), Expect = 5.9
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 17/78 (21%)
Query: 3 SSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKG--------IDVL 54
+ + I+ +E K+ +V F +P CG + + + L YK +D
Sbjct: 374 KNFDDIVLDE-GKDVLVEFY-----APWCGHCKALAPIYEELAEKYKDDENVVIAKMDAT 427
Query: 55 ADDALRQSIKEYSNWPTI 72
A+D + + PTI
Sbjct: 428 ANDVPSLKVDGF---PTI 442
>gnl|CDD|48576 cd03027, GRX_DEP, Glutaredoxin (GRX) family, Dishevelled, Egl-10,
and Pleckstrin (DEP) subfamily; composed of
uncharacterized proteins containing a GRX domain and
additional domains DEP and DUF547, both of which have
unknown functions. GRX is a glutathione (GSH)
dependent reductase containing a redox active CXXC
motif in a TRX fold. It has preference for mixed GSH
disulfide substrates, in which it uses a monothiol
mechanism where only the N-terminal cysteine is
required. By altering the redox state of target
proteins, GRX is involved in many cellular functions..
Length = 73
Score = 24.4 bits (53), Expect = 6.7
Identities = 11/58 (18%), Positives = 23/58 (39%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGG 84
+ C V L G+ Y I++ + ++E + +PQ++ +GG
Sbjct: 7 SRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGG 64
>gnl|CDD|119416 cd00142, PI3Kc_like, Phosphoinositide 3-kinase (PI3K)-like family,
catalytic domain; The PI3K-like catalytic domain family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
RIO kinases. Members of the family include PI3K,
phosphoinositide 4-kinase (PI4K), PI3K-related protein
kinases (PIKKs), and TRansformation/tRanscription
domain-Associated Protein (TRRAP). PI3Ks catalyze the
transfer of the gamma-phosphoryl group from ATP to the
3-hydroxyl of the inositol ring of
D-myo-phosphatidylinositol (PtdIns) or its derivatives,
while PI4K catalyze the phosphorylation of the
4-hydroxyl of PtdIns. PIKKs are protein kinases that
catalyze the phosphorylation of serine/threonine
residues, especially those that are followed by a
glutamine. PI3Ks play an important role in a variety of
fundamental cellular processes, including cell motility,
the Ras pathway, vesicle trafficking and secretion,
immune cell activation and apoptosis. PI4Ks produce
PtdIns(4)P, the major precursor to important signaling
phosphoinositides. PIKKs have diverse functions
including cell-cycle checkpoints, genome surveillance,
mRNA surveillance, and translation control..
Length = 219
Score = 24.5 bits (54), Expect = 6.9
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 5 VNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIK 64
+N I++ E+ + + P SPR G +++V+ G L DD L + +K
Sbjct: 53 MNKILKKELGLDLFLTTYSVIPLSPRSG----LIEVV-------PGSVTLEDD-LSKWLK 100
Query: 65 EYS 67
S
Sbjct: 101 RKS 103
>gnl|CDD|37903 KOG2692, KOG2692, KOG2692, Sialyltransferase [Carbohydrate
transport and metabolism].
Length = 376
Score = 24.3 bits (52), Expect = 7.3
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 1 MNSSV--NSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKV 37
NS + NS + EI +D V+ + PT G+ V
Sbjct: 161 GNSGILLNSRLGREIDSHDFVIRLNLAPTK---GYEKDV 196
>gnl|CDD|30884 COG0538, Icd, Isocitrate dehydrogenases [Energy production and
conversion].
Length = 407
Score = 24.0 bits (52), Expect = 8.3
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 52 DVLADDALRQSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMF 92
D +ADD L+Q + + I + GD+I D +
Sbjct: 268 DRIADDMLQQILLRPGEYDVIATKNLNGDYIS--DALAAQV 306
>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 24.1 bits (52), Expect = 8.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 50 GIDVLADDALRQSIKEY 66
G+DV A +R+ +KEY
Sbjct: 186 GLDVNAQANIREFLKEY 202
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.138 0.407
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,263,686
Number of extensions: 58789
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 37
Length of query: 106
Length of database: 6,263,737
Length adjustment: 73
Effective length of query: 33
Effective length of database: 4,686,280
Effective search space: 154647240
Effective search space used: 154647240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)