RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780968|ref|YP_003065381.1| hypothetical protein
CLIBASIA_04345 [Candidatus Liberibacter asiaticus str. psy62]
(106 letters)
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster
scaffolder, Fe2S2, homodimer, cytoplasm, transport,
glutathione, thioredoxin fold; HET: GSW; 1.90A
{Escherichia coli} PDB: 1yka_A
Length = 135
Score = 133 bits (336), Expect = 9e-33
Identities = 43/100 (43%), Positives = 68/100 (68%)
Query: 3 SSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQS 62
S+ IQ +I +N ++L+MKG+P P CGFS + VQ L + G + +D+L + +R
Sbjct: 22 STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAE 81
Query: 63 IKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEILS 102
+ +Y+NWPT PQL+V G+ +GGCDIV EM++ GEL +++
Sbjct: 82 LPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIK 121
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL
redox-active center, transit peptide, transport,
oxidoreduc; 2.40A {Arabidopsis thaliana}
Length = 109
Score = 125 bits (314), Expect = 3e-30
Identities = 48/101 (47%), Positives = 68/101 (67%)
Query: 1 MNSSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALR 60
+ + ++ + VVLFMKGT P CGFS VVQ+L +L V ++ +++L ++ LR
Sbjct: 3 LTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLR 62
Query: 61 QSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
Q +KEYSNWPT PQLY+ G+F GGCDI E F++GEL E +
Sbjct: 63 QGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEV 103
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame
87, Fe/S cluster, oxidoreductase, thioredoxin family,
GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens}
PDB: 2wul_A*
Length = 118
Score = 117 bits (295), Expect = 6e-28
Identities = 51/94 (54%), Positives = 69/94 (73%), Gaps = 1/94 (1%)
Query: 9 IQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVS-YKGIDVLADDALRQSIKEYS 67
+ +KK+ VV+F+KGTP P+CGFS VVQ+L GV Y +VL D LRQ IK+YS
Sbjct: 13 LDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYS 72
Query: 68 NWPTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
NWPTIPQ+Y+ G+F+GGCDI+ +M ++G+L E L
Sbjct: 73 NWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEEL 106
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron
transport, mitochondrion, redox-active center, transit
peptide, transport; 1.67A {Saccharomyces cerevisiae}
Length = 121
Score = 117 bits (293), Expect = 9e-28
Identities = 49/104 (47%), Positives = 69/104 (66%), Gaps = 3/104 (2%)
Query: 1 MNSSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGV---SYKGIDVLADD 57
+++ + I++ I+ VVLFMKGTP P+CGFS + +L + GV + +VL D
Sbjct: 1 LSTEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDP 60
Query: 58 ALRQSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
LR+ IKE+S WPTIPQLYV +FIGGCD++ M SGEL ++L
Sbjct: 61 ELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLL 104
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: c.47.1.1
Length = 109
Score = 112 bits (282), Expect = 2e-26
Identities = 48/99 (48%), Positives = 70/99 (70%)
Query: 3 SSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQS 62
SS +S ++ K V+LFMKG +CGFS +++++L+S GV Y+ D+L D+ +RQ
Sbjct: 2 SSGSSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQG 61
Query: 63 IKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
+K +SNWPT PQLYV+GD +GG DIV E+ ++GEL IL
Sbjct: 62 LKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPIL 100
>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron
transport, redox- active center, yeast, GRX1P,
transport; HET: PIA; 2.7A {Aequorea victoria}
Length = 362
Score = 100 bits (251), Expect = 8e-23
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 1 MNSSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVL-DSLGVSYKGIDVLADD-- 57
++ +++ I +N++ + K C +S + L + L V + VL +
Sbjct: 246 VSQETIKHVKDLIAENEIFVASK-----TYCPYSHAALNTLFEKLKVPRSKVLVLQLNDM 300
Query: 58 ----ALRQSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
++ ++ E + T+P +Y+ G IGG D + E+ E+GEL E+L
Sbjct: 301 KEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELL 348
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron
transport, redox-active center, transport; HET: MES;
2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A
Length = 118
Score = 91.9 bits (228), Expect = 3e-20
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 1 MNSSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVL-DSLGVSYKGIDVLADD-- 57
++ +++ I +N++ + K C + + L + L V + VL +
Sbjct: 10 VSQETIKHVKDLIAENEIFVASK-----TYCPYCHAALNTLFEKLKVPRSKVLVLQLNDM 64
Query: 58 ----ALRQSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
++ ++ E + T+P +Y+ G IGG D + E+ E+GEL E+L
Sbjct: 65 KEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELL 112
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron
transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB:
3grx_A*
Length = 82
Score = 91.0 bits (226), Expect = 6e-20
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 17 DVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLY 76
+V ++ K C + + +L S GVS++ + + + A R+ + + S T+PQ++
Sbjct: 2 NVEIYTK-----ETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIF 56
Query: 77 VKGDFIGGCDIVCEMFESGELHEIL 101
+ IGG D + + G L +L
Sbjct: 57 IDAQHIGGYDDLYALDARGGLDPLL 81
>3fz9_A Glutaredoxin; oxidoreductase; HET: GSH; 1.70A {Populus tremula x
populus tremuloides} PDB: 3fza_A*
Length = 112
Score = 85.0 bits (210), Expect = 3e-18
Identities = 22/106 (20%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 1 MNSSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDV----LAD 56
S + ++ + +N VV++ K C +S +V + L V +++
Sbjct: 3 FGSRLEDAVKKTVAENPVVVYSK-----TWCSYSSEVKSLFKRLNVDPLVVELDELGAQG 57
Query: 57 DALRQSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEILS 102
+++ ++ + T+P +++ G IGGC +++ GEL +LS
Sbjct: 58 PQIQKVLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLS 103
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6,
oxidoreductase; HET: GTT; 1.50A {Saccharomyces
cerevisiae}
Length = 127
Score = 84.3 bits (208), Expect = 6e-18
Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 4 SVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADD------ 57
+V + + +++F K T C +S + ++L++ ++ D
Sbjct: 2 NVQKEYSLILDLSPIIIFSKST-----CSYSKGMKELLENEYQFIPNYYIIELDKHGHGE 56
Query: 58 ALRQSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
L++ IK + T+P L V G GG + + ++ G+L E L
Sbjct: 57 ELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKLLESL 100
>1kte_A Thioltransferase; redox-active center, electron transport,
acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB:
1jhb_A 1b4q_A*
Length = 105
Score = 83.1 bits (205), Expect = 1e-17
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 7 SIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGI-----DVLADDALRQ 61
+ + ++I+ VV+F+K P C F K ++L L + +D Q
Sbjct: 3 AFVNSKIQPGKVVVFIK-----PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQ 57
Query: 62 S-IKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
+++ + T+P++++ + IGGC + M + GEL L
Sbjct: 58 DYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRL 98
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S,
structural genomics, structural genomics consortium,
SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB:
2fls_A*
Length = 146
Score = 82.8 bits (204), Expect = 2e-17
Identities = 22/104 (21%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 1 MNSSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADD--- 57
+ ++ + IQ I N VV+F K C + ++ + V+YK +++ +
Sbjct: 34 LATAPVNQIQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVVELDLLEYGN 88
Query: 58 ALRQSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
+ ++ + + T+P+++V G FIGG + + G+L ++
Sbjct: 89 QFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 132
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite.,
electron transport, oxidoreductase; 1.80A {Ectromelia
virus moscow} PDB: 2hzf_A 2hze_B
Length = 114
Score = 82.4 bits (203), Expect = 2e-17
Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 9 IQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDAL------RQS 62
+Q + N V +F+K T C F + +L+ +++ R
Sbjct: 12 VQQRLANNKVTIFVKYT-----CPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDY 66
Query: 63 IKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEILS 102
++ + T+P+++ IGG + E+ L +ILS
Sbjct: 67 FEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILS 106
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 81.6 bits (201), Expect = 4e-17
Identities = 22/104 (21%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 1 MNSSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADD--- 57
+ ++ + IQ I N VV+F K C + ++ + V+YK +++ +
Sbjct: 12 LATAPVNQIQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVVELDLLEYGN 66
Query: 58 ALRQSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
+ ++ + + T+P+++V G FIGG + + G+L ++
Sbjct: 67 QFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 110
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron transport,
structural genomics; NMR {Bartonella henselae str}
Length = 89
Score = 80.7 bits (199), Expect = 8e-17
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 16 NDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQL 75
+++L+ + P C + + +LD GV Y ID + ++ ++ + T PQ+
Sbjct: 6 KEIILYTR-----PNCPYCKRARDLLDKKGVKYTDIDA-STSLRQEMVQRANGRNTFPQI 59
Query: 76 YVKGDFIGGCDIVCEMFESGELHEIL 101
++ +GGCD + + G+L +L
Sbjct: 60 FIGDYHVGGCDDLYALENKGKLDSLL 85
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET:
GTT; 2.10A {Populus tremula x populus tremuloides} PDB:
1z7p_A 1z7r_A
Length = 116
Score = 78.5 bits (193), Expect = 3e-16
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 9 IQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALR---QSIKE 65
+ VV+F K CG+ +V Q+L +G SYK +++ ++
Sbjct: 13 AKELASSAPVVVFSK-----TYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAH 67
Query: 66 YSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
++ T+P +++ G IGGCD V E + EL +L
Sbjct: 68 WTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLL 103
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1
c.47.1.10
Length = 241
Score = 77.7 bits (191), Expect = 6e-16
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 9 IQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSN 68
+ + + + + T P C F K Q+L G+S++ I + DA S++ S
Sbjct: 162 LAPQHQVQESISIF----TKPGCPFCAKAKQLLHDKGLSFEEIILG-HDATIVSVRAVSG 216
Query: 69 WPTIPQLYVKGDFIGGCDIVCEMF 92
T+PQ+++ G IGG D + + F
Sbjct: 217 RTTVPQVFIGGKHIGGSDDLEKYF 240
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron transport,
structural genomics; NMR {Brucella melitensis}
Length = 92
Score = 76.6 bits (188), Expect = 1e-15
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 16 NDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQL 75
DV+++ + P C + + +L G + ID A LR ++E S T PQ+
Sbjct: 6 VDVIIYTR-----PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQI 60
Query: 76 YVKGDFIGGCDIVCEMFESGELHEIL 101
++ +GGCD + + + G+L +L
Sbjct: 61 FIGSVHVGGCDDLYALEDEGKLDSLL 86
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics,
structural genomics consortium, SGC, cytoplasm,
developmental protein; 2.21A {Homo sapiens}
Length = 114
Score = 76.2 bits (187), Expect = 1e-15
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 1 MNSSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYK---GIDVLADD 57
+ + I+++ VV+F K C S +V ++ SLGV V
Sbjct: 2 AREELRRHLVGLIERSRVVIFSKSY-----CPHSTRVKELFSSLGVECNVLELDQVDDGA 56
Query: 58 ALRQSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
+++ + E +N T+P ++V +GGCD + ++SG L ++L
Sbjct: 57 RVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLL 100
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2;
SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 111
Score = 71.2 bits (174), Expect = 6e-14
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 14/91 (15%)
Query: 27 TSPRCGFSG------KVVQVLDSLGVSYKGIDVLADDALRQSIKEYSN--------WPTI 72
+ GF VV+ L++ + ++ +D+ + RQ + + P
Sbjct: 14 IASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLP 73
Query: 73 PQLYVKGDFIGGCDIVCEMFESGELHEILSI 103
PQ++ + G D E ES + L +
Sbjct: 74 PQIFNGDRYCGDYDSFFESKESNTVFSFLGL 104
>3ctg_A Glutaredoxin-2; reduced form, cytoplasm, electron transport,
mitochondrion, redox-active center, transit peptide,
transport; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A
3d4m_A 3d5j_A*
Length = 129
Score = 70.5 bits (172), Expect = 8e-14
Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 1 MNSSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVL-DSLGVSYKGIDVLA---- 55
++ + +++ I + +V + K C + + L L V VL
Sbjct: 22 VSQETVAHVKDLIGQKEVFVAAK-----TYCPYCKATLSTLFQELNVPKSKALVLELDEM 76
Query: 56 --DDALRQSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
++ +++E S T+P +Y+ G IGG + + ++G+L EIL
Sbjct: 77 SNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 124
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding,
glutaredoxin, thioredoxin fold, crystallography, protein
binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Length = 121
Score = 69.6 bits (170), Expect = 1e-13
Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 14/89 (15%)
Query: 27 TSPRCGFSG------KVVQVLDSLGVSYKGIDVLADDALRQSI--------KEYSNWPTI 72
+ G + V+ L++ + ++ D+ A++ R+ + + + +P
Sbjct: 6 IASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLP 65
Query: 73 PQLYVKGDFIGGCDIVCEMFESGELHEIL 101
PQ++ + + G D E E+ ++ L
Sbjct: 66 PQIFNESQYRGDYDAFFEARENNAVYAFL 94
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein- like 3;
glutaredoxin, thioredoxin fold, protein 3D-structure,
X-RAY crystallography; 1.60A {Mus musculus} SCOP:
c.47.1.14 PDB: 1j0f_A 1sj6_A
Length = 93
Score = 69.1 bits (169), Expect = 2e-13
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 27 TSPRCGF------SGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWP--TIPQLYVK 78
++ G +V ++LD + Y+ +D+ D+ALR ++ + P T PQ+
Sbjct: 8 STSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNG 67
Query: 79 GDFIGGCDIVCEMFESGELHEILSI 103
+ G ++ E E L E L +
Sbjct: 68 NHYCGDYELFVEAVEQDTLQEFLKL 92
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP:
c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Length = 85
Score = 64.2 bits (156), Expect = 6e-12
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 12/85 (14%)
Query: 18 VVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGI-----DVLADDALRQSI--KEYSNWP 70
V+F + C + + + + L D+ A+ ++ + K
Sbjct: 3 TVIFGR-----SGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVE 57
Query: 71 TIPQLYVKGDFIGGCDIVCEMFESG 95
T+PQ++V IGG +
Sbjct: 58 TVPQIFVDQQHIGGYTDFAAWVKEN 82
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Bacteriophage
T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Length = 87
Score = 62.4 bits (151), Expect = 2e-11
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 25 TPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADD----------ALRQSIKEYSNWPTIPQ 74
+CG ++L ++ I+++ + L + ++ T+PQ
Sbjct: 8 DSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQ 67
Query: 75 LYVK-GDFIGGCDIVCEMFE 93
++ G IGG D + E F+
Sbjct: 68 VFAPDGSHIGGFDQLREYFK 87
>3lgc_A Glutaredoxin 1; alpha-beta sandwich, structural genomics,
structural genomics of infectious diseases; 2.77A
{Francisella tularensis subsp}
Length = 89
Score = 61.9 bits (150), Expect = 3e-11
Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 12/78 (15%)
Query: 18 VVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADD-------ALRQSIKEYSNWP 70
V ++ + C + Q + +++ + + QS K
Sbjct: 6 VKIYTR-----NGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPIS 60
Query: 71 TIPQLYVKGDFIGGCDIV 88
T+PQ+++ + IGG +
Sbjct: 61 TVPQIFIDDEHIGGFTEL 78
>2v6o_A Thioredoxin glutathione reductase; FAD, flavoprotein,
oxidoreductase, chimeric enzyme, thiol-mediated
detoxification pathway; HET: FAD PG4; 2.20A {Schistosoma
mansoni} PDB: 3h4k_A*
Length = 596
Score = 60.7 bits (146), Expect = 8e-11
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 4 SVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGI---DVLADDALR 60
+ ++ + V+LF C + KV VL + + I + A++
Sbjct: 6 GTSQWLRKTVDSAAVILFS-----KTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQ 60
Query: 61 QSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEILS 102
+ + +S T+PQ++V+G FIG V + + + EL I++
Sbjct: 61 KCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVN 102
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin,
redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Length = 81
Score = 60.4 bits (146), Expect = 1e-10
Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 22 MKGTP-TSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLYVKGD 80
M+ T T C + +++ G ++ I+V ++++ + +P +
Sbjct: 1 MRITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRAQ-GFRQLPVVIAGDL 59
Query: 81 FIGG--CDIVCEMFESGEL 97
G D++ + +
Sbjct: 60 SWSGFRPDMINRLHPAPHA 78
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 56.2 bits (135), Expect = 1e-09
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 4 SVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGID---VLADDALR 60
+ ++ + V+LF + C + KV VL + + I+ + A++
Sbjct: 6 GTSQWLRKTVDSAAVILF-----SKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQ 60
Query: 61 QSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEILS 102
+ + +S T+PQ++V+G FIG V + + + EL I++
Sbjct: 61 KCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVN 102
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural
genomics of infec diseases, csgid, oxidoreductase; HET:
GTT; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Length = 89
Score = 53.4 bits (128), Expect = 1e-08
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 22 MKGTP-TSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALR-------QSIKEYSNWPTIP 73
MK T C + Q + +++ + QS K T+P
Sbjct: 4 MKVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVP 63
Query: 74 QLYVKGDFIGGCDIVCEMFE 93
Q+++ + IGG + +
Sbjct: 64 QIFIDDEHIGGFTELKANAD 83
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein
structure initiative, midwest center for structural
genomics; 1.70A {Archaeoglobus fulgidus}
Length = 92
Score = 50.4 bits (120), Expect = 8e-08
Identities = 11/90 (12%), Positives = 33/90 (36%), Gaps = 17/90 (18%)
Query: 17 DVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADD-----ALRQSIKEYSNWPT 71
+V+++ C + ++ L GV ++ I + + + + + S +
Sbjct: 13 EVLMYGL-----STCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYS 67
Query: 72 IPQLYVKGDFIGGCDIVCEMFESGELHEIL 101
+P + + G + +L E++
Sbjct: 68 VPVVVKGDKHVLGYN-------EEKLKELI 90
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 47.5 bits (113), Expect = 6e-07
Identities = 15/97 (15%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 11 NEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLAD-----DALRQSIKE 65
+ + + V+++ C + K ++L LGV + + V + + ++
Sbjct: 17 SGVDRGKVIMY-----GLSTCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRR 71
Query: 66 YSNWPTIPQLYVKGD-FIGGCDIVCEMFESGELHEIL 101
++ + P + + I G F+ E+ E L
Sbjct: 72 FNPSVSFPTTIINDEKAIVG-------FKEKEIRESL 101
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain
swapping, electron transport; 2.69A {Corynebacterium
ammoniagenes} SCOP: c.47.1.1
Length = 75
Score = 47.2 bits (112), Expect = 8e-07
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGGCD 86
T P C + LD G++Y +D+ DD R + + P + V G+ G
Sbjct: 7 TKPACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMA-LGYVQAPVVEVDGEHWSGFR 65
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.013
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 58 ALRQ---SIKEYSNWPTIPQLYVKG 79
AL++ S+K Y++ + P L +K
Sbjct: 21 ALKKLQASLKLYAD-DSAPALAIKA 44
>2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST,
plasmid, bacterial, biodegradation, fumaryl pyruvate;
HET: TGG; 1.3A {Ralstonia SP} PDB: 2jl4_A*
Length = 214
Score = 30.5 bits (67), Expect = 0.093
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSY--KGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGG 84
R G S ++ L+ GV Y + + ++ L+ + K + +P L +
Sbjct: 7 NFWRSGTSHRLRIALNLKGVPYEYLAVHLGKEEHLKDAFKALNPQQLVPALDTGAQVLIQ 66
Query: 85 CDIVCEMFE 93
+ E E
Sbjct: 67 SPAIIEWLE 75
>1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH,
mosquito, detoxification, xenobiotics; HET: GTS; 2.50A
{Anopheles cracens} SCOP: a.45.1.1 c.47.1.5
Length = 218
Score = 29.9 bits (66), Expect = 0.15
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSY--KGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGG 84
P V+ + +GV K ++++ + L+ E + IP + G +
Sbjct: 7 YLPASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELNPQHCIPTMDDHGLVLWE 66
Query: 85 CDIVCEMF 92
++
Sbjct: 67 SRVILSYL 74
>1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A
{Zea mays} SCOP: a.45.1.1 c.47.1.5
Length = 216
Score = 29.7 bits (65), Expect = 0.17
Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSY--KGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGG 84
P +V VL+ G+ + +D+ + + + IP L + +
Sbjct: 7 GMPLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVDGDEVLFE 66
Query: 85 CDIVCEMFE 93
+
Sbjct: 67 SRAINRYIA 75
>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP:
a.45.1.1 c.47.1.5
Length = 221
Score = 29.0 bits (64), Expect = 0.22
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSY--KGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGG 84
+ R + +V L G+ Y +++L D K+ + T+P L I
Sbjct: 13 SYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVDGDVVIND 72
Query: 85 CDIVCEMFE 93
+ +
Sbjct: 73 SFAIIMYLD 81
>1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX;
2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5
PDB: 1bx9_A*
Length = 211
Score = 28.8 bits (63), Expect = 0.32
Identities = 4/69 (5%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSYK--GIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGG 84
P + +V+ L + ++ +++ + ++ + + +P +
Sbjct: 7 GHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFE 66
Query: 85 CDIVCEMFE 93
+ +
Sbjct: 67 SRAITQYIA 75
>3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; 2.30A {Legionella pneumophila
subsp}
Length = 222
Score = 28.2 bits (62), Expect = 0.42
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSYKGIDV-LADDALRQSIKEY-SNWP--TIPQLYVKGDFI 82
R +V L+ ++Y+ I+V L ++ Q +Y P +P L + G +
Sbjct: 7 DYFRSTACYRVRIALNLKKIAYEKIEVHLVNNGGEQHSLQYHQINPQELVPSLDINGQIL 66
Query: 83 GGCDIVCEMFE 93
+ + E
Sbjct: 67 SQSMAIIDYLE 77
>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class
GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM;
1.75A {Glycine max} PDB: 3fhs_A*
Length = 219
Score = 28.2 bits (62), Expect = 0.47
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 16 NDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQL 75
++VVL F +V L G+ Y+ + + ++ IP L
Sbjct: 3 DEVVLL-----DFWPSPFGMRVRIALAEKGIKYEYKEEDLRNKSPLLLQMNPVHKKIPVL 57
Query: 76 YVKGDFIGGCDIVCEMFE 93
G I I + E
Sbjct: 58 IHNGKPICESLIAVQYIE 75
>3lyp_A Stringent starvation protein A; structural genomics,
GST-superfamily, SSPA, PSI-2, protein structure
initiative; 1.60A {Pseudomonas fluorescens} PDB: 3mdk_A
Length = 215
Score = 28.1 bits (62), Expect = 0.50
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 16 NDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQL 75
N + + + P +S +V VL GVS + I V A + E + + ++P L
Sbjct: 7 NRLACY-----SDPADHYSHRVRIVLAEKGVSAEIISVEAGRQ-PPKLIEVNPYGSLPTL 60
Query: 76 YVKGDFIGGCDIVCEMFE 93
+ + +V E +
Sbjct: 61 VDRDLALWESTVVMEYLD 78
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 28.0 bits (62), Expect = 0.50
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 29/89 (32%)
Query: 33 FSGKVVQVL--DSLGVSY---KGIDVLA--DDALRQSIKEY------SNWPTIP--QL-- 75
FS + + L +L +G+++L ++ K+Y S P I QL
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS-CPLIGVIQLAH 248
Query: 76 YVKGDFIGGCDIVCEM--FESGELHEILS 102
YV + ++ F GEL L
Sbjct: 249 YV---------VTAKLLGFTPGELRSYLK 268
>3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics,
protein structure initiative, nysgxrc; 2.04A
{Rhodopseudomonas palustris}
Length = 225
Score = 27.4 bits (60), Expect = 0.77
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSY--KGIDVLADDALRQSIKEYSNWPTIPQLYVK-GDFIG 83
+ R G S KV L L Y +D+L ++ + +P L G ++
Sbjct: 8 SMQRSGNSYKVRLALALLDAPYRAVEVDILRGESRTPDFLAKNPSGQVPLLETAPGRYLA 67
Query: 84 GCDIVCEMFESGELH 98
+ + G
Sbjct: 68 ESNAILWYLAVGTSL 82
>1axd_A Glutathione S-transferase I; complex (transferase/ligand),
transferase, herbicide detoxification; 2.50A {Zea mays}
SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A*
Length = 209
Score = 27.5 bits (59), Expect = 0.84
Identities = 7/67 (10%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Query: 28 SPRCGFSGKVVQVLDSLGVSY--KGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGGC 85
+ + L+ G Y I+ + + + +P L ++
Sbjct: 8 AVMSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRNPFGQVPALQDGDLYLFES 67
Query: 86 DIVCEMF 92
+C+
Sbjct: 68 RAICKYA 74
>2imi_A Epsilon-class glutathione S-transferase; HET: GSH; 1.40A
{Anopheles gambiae} PDB: 2il3_A* 2imk_A*
Length = 221
Score = 27.4 bits (59), Expect = 0.89
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSY--KGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGG 84
T V +LG+ K I++L D L+ + + TIP L G I
Sbjct: 8 TLHLSPPCRAVELTAKALGLELEQKTINLLTGDHLKPEFVKLNPQHTIPVLDDNGTIITE 67
Query: 85 CDIVCEMFE 93
+
Sbjct: 68 SHAIMIYLV 76
>2cz2_A Maleylacetoacetate isomerase; structural genomics, GST, GSTZ1-1,
NPPSFA, national project on protein structural and
functional analyses; HET: GSH; 1.40A {Mus musculus}
PDB: 2cz3_A 1fw1_A*
Length = 223
Score = 26.6 bits (57), Expect = 1.5
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSYKGIDV-LADDALRQSIKEY---SNWPTIPQLYVKGDFI 82
+ R S +V L G+ Y+ + + L D +Q +E+ + +P L + G I
Sbjct: 17 SYFRSSCSWRVRIALALKGIDYEIVPINLIKDGGQQFTEEFQTLNPMKQVPALKIDGITI 76
Query: 83 GGCDIVCEMF 92
+ E
Sbjct: 77 VQSLAIMEYL 86
>2r4v_A XAP121, chloride intracellular channel protein 2; chloride
intracellular channels, CLIC2, pore-forming protein,
ryanodine receptor; HET: GTT; 1.85A {Homo sapiens} PDB:
2r5g_A 2per_A*
Length = 247
Score = 26.5 bits (57), Expect = 1.5
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 14 KKNDVVLFMKGTPTSPR---CGFSGKVVQVLDSLGVSYKGIDV 53
++ LF+K C F ++ +L GV + V
Sbjct: 10 VDPEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTV 52
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 26.5 bits (57), Expect = 1.6
Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Query: 34 SGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFE 93
G + + Y+ + + + P L + + G I +
Sbjct: 60 HGSKPSKYSTCFLHYRA--WTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMK 117
Query: 94 SGELHEI 100
SGE +
Sbjct: 118 SGERALV 124
>3lyk_A Stringent starvation protein A homolog; structural genomics,
GST-superfamily, SSPA, PSI-2, protein structure
initiative; 2.10A {Haemophilus influenzae}
Length = 216
Score = 26.1 bits (57), Expect = 1.7
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGGCD 86
++ + +V VL GV Y+ +V AL + + E + + T+P L + +
Sbjct: 11 SNKDDIYCHQVKIVLAEKGVLYENAEV-DLQALPEDLMELNPYGTVPTLVDRDLVLFNSR 69
Query: 87 IVCEMFE 93
I+ E +
Sbjct: 70 IIMEYLD 76
>1k0d_A URE2 protein; nitrate assimilation, structural genomics, gene
regulation; HET: GTT; 2.20A {Saccharomyces cerevisiae}
SCOP: a.45.1.1 c.47.1.5 PDB: 1jzr_A* 1k0b_A* 1k0c_A*
1k0a_A* 1g6w_A 1g6y_A 1hqo_A
Length = 260
Score = 26.4 bits (57), Expect = 1.7
Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 5/68 (7%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSY--KGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGG 84
+ KV VL LG Y +D + + +P L D
Sbjct: 24 SHRSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALI---DHGMD 80
Query: 85 CDIVCEMF 92
+ E
Sbjct: 81 NLSIWESG 88
>3bul_A Methionine synthase; transferase, reactivation conformation,
cobalamin, intermodular interactions, amino-acid
biosynthesis, cobalt; HET: B12; 2.30A {Escherichia
coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 1k7y_A*
1k98_A* 1bmt_A*
Length = 579
Score = 26.1 bits (57), Expect = 2.0
Identities = 9/50 (18%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 48 YKGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGEL 97
KGI + ++ ++ + P ++G + G ++V ++F G++
Sbjct: 20 VKGITEFIEQDTEEARQQATR----PCEVIEGPLMDGMNVVGDLFGEGKM 65
>3lxz_A Glutathione S-transferase family protein; structural genomics,
PP0183, PSI-2, protein structure initiative; 1.76A
{Pseudomonas putida}
Length = 229
Score = 25.8 bits (56), Expect = 2.7
Identities = 4/31 (12%), Positives = 10/31 (32%)
Query: 28 SPRCGFSGKVVQVLDSLGVSYKGIDVLADDA 58
+ V L G++++ + A
Sbjct: 8 FSVSNYYNMVKLALLEKGLTFEEVTFYGGQA 38
>3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein
structure initiative; HET: GTT; 1.75A {Pseudomonas
fluorescens}
Length = 210
Score = 25.4 bits (55), Expect = 3.4
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 28 SPRCGFSGKVVQVLDSLGVSY--KGIDVLADDALRQSIKEYSNWPTIPQLYVKGDFI 82
R G K+ +L+ LG+ Y + +D+L D ++ + IP L ++
Sbjct: 9 DYRSGNCYKIKLMLNLLGLPYEWQAVDILGGDTQTEAFLAKNPNGKIPVLELEDGTC 65
>1gwc_A Glutathione S-transferase TSI-1; herbicide detoxification, plant,
TAU class; HET: GTX; 2.25A {Aegilops tauschii} SCOP:
a.45.1.1 c.47.1.5
Length = 230
Score = 24.9 bits (53), Expect = 4.2
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 28 SPRCGFSGKVVQVLDSLGVSYKGIDV 53
+ F +V L G+SY+ ++
Sbjct: 12 AWPSPFVTRVKLALALKGLSYEDVEE 37
>2vy9_A Anti-sigma-factor antagonist; gene regulation, RSBS, stressosome,
STAS domain, bacillus subtilis; 2.3A {Moorella
thermoacetica}
Length = 123
Score = 25.0 bits (54), Expect = 4.4
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 31 CGFSGKVVQVLDSLGVSYKGIDVLAD--DALRQ 61
G V L +G+ +G+ + L +
Sbjct: 81 TGIKPAVAITLTEMGLDLRGMATALNLQKGLDK 113
>1eem_A Glutathione-S-transferase; GST, glutathione conjugating, putative
oxidoreductase; HET: GSH; 2.00A {Homo sapiens} SCOP:
a.45.1.1 c.47.1.5
Length = 241
Score = 24.8 bits (53), Expect = 4.9
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 27 TSPRCGFSGKVVQVLDSLGVSYKGIDV 53
+ C F+ + VL + G+ ++ I++
Sbjct: 28 SMRFCPFAERTRLVLKAKGIRHEVINI 54
>3nzt_A Glutamate--cysteine ligase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha and
beta proteins; HET: AMP; 2.00A {Francisella tularensis
subsp}
Length = 525
Score = 24.6 bits (53), Expect = 5.7
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 10 QNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADD---ALRQSIKEY 66
+ + D ++ TS R G L +SY + D A + +Y
Sbjct: 219 PDYLSVLDDKFYVGEYATSLRMSDLGYTSPAQKDLAISYDNVKAYVKDLIQATDDTFADY 278
Query: 67 SN 68
Sbjct: 279 KR 280
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure
2 function project, S2F, structural genomics, unknown
function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa
PAO1} SCOP: c.47.1.12
Length = 114
Score = 24.2 bits (52), Expect = 7.7
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 29 PRCGFSGKVVQVLDSLGVSYKGIDVLADD 57
C K LD V+Y D A
Sbjct: 8 KACDTMKKARTWLDEHKVAYDFHDYKAVG 36
>3f8u_A Protein disulfide-isomerase A3ERP57; alternative splicing,
endoplasmic reticulum, glycoprotein, immunoglobulin
domain, membrane, microsome, protein disulfide
isomerase; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A
2alb_A
Length = 481
Score = 24.1 bits (51), Expect = 8.7
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 17/83 (20%)
Query: 8 IIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLA--------DDAL 59
I +V F +P CG + ++ ++ KGI LA +
Sbjct: 15 ISDTGSAGLMLVEF-----FAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCN 69
Query: 60 RQSIKEYSNWPTIPQLYVKGDFI 82
+ + Y PT+ +++ G+
Sbjct: 70 KYGVSGY---PTL-KIFRDGEEA 88
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Length = 524
Score = 23.7 bits (50), Expect = 9.1
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 9 IQNEIKKNDVVLFM-KGTPTSPRCGFSGKVVQVLDSLG 45
I K D ++ M G GF G ++L +LG
Sbjct: 488 ICTHAKAGDAIVIMSNG-------GFEGIHQRLLTALG 518
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate
ligase; structural genomics, MCSG, PSI-2; 1.90A
{Haemophilus ducreyi}
Length = 163
Score = 23.9 bits (51), Expect = 9.5
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 8/37 (21%)
Query: 9 IQNEIKKNDVVLFM-KGTPTSPRCGFSGKVVQVLDSL 44
I + K ND +L M G F G ++L +L
Sbjct: 132 IVQQAKPNDHILIMSNG-------AFGGIHQKLLTAL 161
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.138 0.407
Gapped
Lambda K H
0.267 0.0541 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 921,193
Number of extensions: 37671
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 65
Length of query: 106
Length of database: 5,693,230
Length adjustment: 71
Effective length of query: 35
Effective length of database: 3,971,906
Effective search space: 139016710
Effective search space used: 139016710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)