BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780968|ref|YP_003065381.1| hypothetical protein
CLIBASIA_04345 [Candidatus Liberibacter asiaticus str. psy62]
(106 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780968|ref|YP_003065381.1| hypothetical protein CLIBASIA_04345 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 106
Score = 218 bits (554), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MNSSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALR 60
MNSSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALR
Sbjct: 1 MNSSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALR 60
Query: 61 QSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEILSIDRI 106
QSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEILSIDRI
Sbjct: 61 QSIKEYSNWPTIPQLYVKGDFIGGCDIVCEMFESGELHEILSIDRI 106
>gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 920
Score = 25.0 bits (53), Expect = 0.35, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 4 SVNSIIQNEIKKNDVVLFMKGTPTSPR 30
S+N IQN I N + +K +P PR
Sbjct: 350 SINFFIQNPILINPIQKILKSSPDVPR 376
>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 246
Score = 23.9 bits (50), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 14/49 (28%)
Query: 29 PRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLYV 77
PRC LG+S D+L A+ Q+++ +WP+ P V
Sbjct: 33 PRC------------LGISRD--DLLVHSAIEQAVRLIDSWPSWPSRVV 67
>gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9 3-methyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 254
Score = 23.5 bits (49), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 26 PTSPRCGFSGKVVQVLDSLGVSY 48
PT C + V+++D +GV Y
Sbjct: 203 PTEMECFLAANKVKIIDRVGVVY 225
>gi|254781017|ref|YP_003065430.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 324
Score = 22.7 bits (47), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 29 PRCGFSGKVVQVLDS 43
P CGF KV+ LDS
Sbjct: 85 PSCGFDLKVISQLDS 99
>gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 22.7 bits (47), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 45 GVSYKGIDVLADDALRQSIKEYS 67
G+ YK ID+L + + R+S + S
Sbjct: 277 GIPYKIIDLLRNSSFRESFENKS 299
>gi|254780848|ref|YP_003065261.1| co-chaperonin GroES [Candidatus Liberibacter asiaticus str. psy62]
Length = 111
Score = 22.3 bits (46), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 8 IIQNEIKKNDVVLFMK--GTPTSPRCGFSGKVVQVLDSLGV 46
+I+ E+ K D+VLF K GT G V+Q D +G+
Sbjct: 63 VIEPEVSKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGI 103
>gi|254781144|ref|YP_003065557.1| hypothetical protein CLIBASIA_05240 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 76
Score = 21.9 bits (45), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 48 YKGIDVLADDALRQSIKEYSNWPTIPQ 74
Y GI LA+ Q++ EY N P Q
Sbjct: 48 YNGIARLAEAVGVQNVNEYFNNPDSEQ 74
>gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 423
Score = 21.6 bits (44), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 78 KGDFIGGCDIVCEMFESGELHEILSID 104
+GD I DI+CE+ + E S+D
Sbjct: 27 EGDKISPGDILCEIETDKAIMEFESVD 53
>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 750
Score = 20.4 bits (41), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 21 FMKGTPTSPRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEY 66
F + +S + ++ ++LD + K +L DD ++ IK+Y
Sbjct: 318 FHRDNSSSTKIQQDSQIQKMLD---LYKKNCQILHDDKMQSLIKDY 360
>gi|255764512|ref|YP_003065529.2| preprotein tranlocase protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 108
Score = 20.0 bits (40), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 23 KGTPTSPRCGFSGKVVQVLDSL 44
+G G GKVV+V+D L
Sbjct: 58 RGDSIVTAAGIVGKVVRVIDDL 79
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,374
Number of Sequences: 1233
Number of extensions: 2831
Number of successful extensions: 13
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 106
length of database: 328,796
effective HSP length: 62
effective length of query: 44
effective length of database: 252,350
effective search space: 11103400
effective search space used: 11103400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)