Query gi|254780969|ref|YP_003065382.1| hypothetical protein CLIBASIA_04350 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 79 No_of_seqs 106 out of 1637 Neff 6.0 Searched_HMMs 23785 Date Tue May 31 23:50:23 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780969.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1xs3_A Hypothetical protein XC 99.9 4.7E-27 2E-31 168.7 5.7 76 1-78 4-79 (80) 2 1v9j_A BOLA-like protein riken 99.9 7.7E-27 3.2E-31 167.5 4.7 77 1-78 28-106 (113) 3 3o2e_A BOLA-like protein; ssgc 99.9 3.6E-26 1.5E-30 163.8 7.3 76 2-78 22-98 (105) 4 2dhm_A Protein BOLA; stationar 99.9 2.3E-26 9.7E-31 164.9 5.5 76 3-78 9-91 (107) 5 1v60_A BOLA1, riken cDNA 18100 99.9 4E-25 1.7E-29 158.1 10.5 74 5-78 28-108 (123) 6 2kdn_A Putative uncharacterize 99.9 1.9E-25 7.8E-30 159.9 7.5 76 2-78 22-99 (108) 7 2kz0_A BOLA family protein; BO 99.9 5.9E-25 2.5E-29 157.2 5.8 73 1-76 4-76 (76) 8 1ny8_A Protein YRBA; structure 99.9 9.4E-25 4E-29 156.0 4.6 74 2-78 5-79 (97) 9 1ylq_A Putative nucleotidyltra 90.0 1 4.4E-05 23.7 7.1 68 5-78 4-78 (96) 10 2rff_A Putative nucleotidyltra 18.6 53 0.0022 14.3 4.3 65 7-78 21-91 (111) No 1 >1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic} Probab=99.93 E-value=4.7e-27 Score=168.72 Aligned_cols=76 Identities=39% Similarity=0.764 Sum_probs=72.8 Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC Q ss_conf 977889999999821996679999748999669999970466899978999999999998727972688988206788 Q gi|254780969|r 1 MSMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPDS 78 (79) Q Consensus 1 M~m~~~~I~~~i~~~l~~~~v~V~d~sg~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpee 78 (79) ++|+.++|+++|+++||++.++|.| +||+||.|+|||+.|+|+|+|+|||+||++|+++|+++||||+|+|+||+| T Consensus 4 ~~M~~~~I~~~l~~~l~~~~i~V~d--~~g~hf~v~IvS~~F~g~~~v~Rhr~Vy~~L~~~~~~~iHAlsi~t~tp~E 79 (80) T 1xs3_A 4 RPLDAETIRKLIESGLPEARVDVQG--EDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQLKTLTPDE 79 (80) T ss_dssp SCCHHHHHHHHHHHHSSSCEEEEES--CTTSCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTTTCCSCCEEEEECGGG T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEC--CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC T ss_conf 9989999999998349998899983--999889999963675999889999999999999976997247878078655 No 2 >1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1 Probab=99.93 E-value=7.7e-27 Score=167.54 Aligned_cols=77 Identities=21% Similarity=0.451 Sum_probs=74.4 Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEEECC--CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC Q ss_conf 977889999999821996679999748--999669999970466899978999999999998727972688988206788 Q gi|254780969|r 1 MSMNPHEIEKMIKKGIPQSIVTIHDLA--GDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPDS 78 (79) Q Consensus 1 M~m~~~~I~~~i~~~l~~~~v~V~d~s--g~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpee 78 (79) |.|+++.|+++|++.|++..++|.|+| |+|+||+|+|||+.|.|+++|+|||+||++|+++|+ +||||+|+|+||+| T Consensus 28 m~~~~e~I~~kL~~~l~p~~leV~DeS~~h~G~Hf~i~IvS~~F~g~s~i~RHR~V~~~L~~~i~-~IHALsikt~Tp~E 106 (113) T 1v9j_A 28 MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELP-HIHAFEQKTLTPEQ 106 (113) T ss_dssp SSSCHHHHHHHHHHHHTCSEEEEEECCSSSSCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGG-GCSSEEEEEECHHH T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHH-CCEEEEEEECCHHH T ss_conf 76589999999984489818999978789888279999971787799668999999999999972-25004878189999 No 3 >3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis} Probab=99.93 E-value=3.6e-26 Score=163.83 Aligned_cols=76 Identities=21% Similarity=0.469 Sum_probs=71.8 Q ss_pred CCCHHHHHHHHHHCCCCCEEEEEECC-CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC Q ss_conf 77889999999821996679999748-999669999970466899978999999999998727972688988206788 Q gi|254780969|r 2 SMNPHEIEKMIKKGIPQSIVTIHDLA-GDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPDS 78 (79) Q Consensus 2 ~m~~~~I~~~i~~~l~~~~v~V~d~s-g~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpee 78 (79) .++.+.|+++|++.|+++.++|.|+| |||+||+|.|||+.|+|+|+|+|||+||++|+++|++ ||||+|+|+||+| T Consensus 22 m~~~~~Ie~kL~~~l~~~~l~V~D~S~g~gsHf~i~IvS~~F~g~s~v~rhR~V~~~L~eei~~-IHAlsikt~Tp~E 98 (105) T 3o2e_A 22 MVSKSIVEERLRSMLSPQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMPQ-IHAFTMKCLTPGE 98 (105) T ss_dssp CCCHHHHHHHHHHHHCCSEEEEEECCBTTBEEEEEEEECGGGTTCCHHHHHHHHHHHTTTTGGG-EEEEEEEEECHHH T ss_pred CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH-CCCEEEEECCHHH T ss_conf 5239999999984489847999987899853489999846768997899999999999999850-3132777099999 No 4 >2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural genomics, NPPSFA; NMR {Escherichia coli str} Probab=99.92 E-value=2.3e-26 Score=164.91 Aligned_cols=76 Identities=22% Similarity=0.517 Sum_probs=72.2 Q ss_pred CCHHHHHHHHHHCCCCCEEEEEECC-------CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECC Q ss_conf 7889999999821996679999748-------999669999970466899978999999999998727972688988206 Q gi|254780969|r 3 MNPHEIEKMIKKGIPQSIVTIHDLA-------GDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSV 75 (79) Q Consensus 3 m~~~~I~~~i~~~l~~~~v~V~d~s-------g~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~t 75 (79) |..++|+++|++.|++..++|.|+| |+++||.|.|||+.|+|+++|+|||+||++|+++|+++||||+|+|+| T Consensus 9 ~~~~~I~~~L~~~~~~~~l~V~D~S~~H~~h~g~~~Hf~i~IvS~~F~g~s~i~rHR~V~~~L~~ei~~~IHALsik~~T 88 (107) T 2dhm_A 9 MIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTYT 88 (107) T ss_dssp CHHHHHHHHHHHHTCCSCCEEEECCCCCSSCCCSCCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTTCCCCEEEEEC T ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECC T ss_conf 89999999998418985799997877666889997279999986753688789999999999999971797536878389 Q ss_pred CCC Q ss_conf 788 Q gi|254780969|r 76 PDS 78 (79) Q Consensus 76 pee 78 (79) |+| T Consensus 89 ~~E 91 (107) T 2dhm_A 89 IKE 91 (107) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 5 >1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Probab=99.92 E-value=4e-25 Score=158.10 Aligned_cols=74 Identities=20% Similarity=0.541 Sum_probs=70.8 Q ss_pred HHHHHHHHHHCCCCCEEEEEECC-------CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC Q ss_conf 89999999821996679999748-------99966999997046689997899999999999872797268898820678 Q gi|254780969|r 5 PHEIEKMIKKGIPQSIVTIHDLA-------GDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPD 77 (79) Q Consensus 5 ~~~I~~~i~~~l~~~~v~V~d~s-------g~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpe 77 (79) ++.|+++|+++|++..++|.|+| |+++||.|+|||+.|+|+++|+|||+||++|+++|+++||||+|+|+||+ T Consensus 28 e~~I~~kL~~~l~p~~leV~D~S~~H~~h~g~~sHf~i~IvS~~F~g~s~i~rHr~Vy~~L~~ei~~~iHALsik~~Tp~ 107 (123) T 1v60_A 28 EAAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGPVHALAIQAKTPA 107 (123) T ss_dssp HHHHHHHHHHHTCCSEEEEEECCCSSSCCTTCCSEEEEEEECGGGTTCCHHHHHHHHHHHTHHHHTTTCSEEEEEEECTT T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHH T ss_conf 99999999850898379999788664767899857999998775479878999999999999997489733687818999 Q ss_pred C Q ss_conf 8 Q gi|254780969|r 78 S 78 (79) Q Consensus 78 e 78 (79) | T Consensus 108 E 108 (123) T 1v60_A 108 Q 108 (123) T ss_dssp T T ss_pred H T ss_conf 9 No 6 >2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum} Probab=99.92 E-value=1.9e-25 Score=159.92 Aligned_cols=76 Identities=25% Similarity=0.447 Sum_probs=70.8 Q ss_pred CCCH-HHHHHHHHHCCCCCEEEEEECC-CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC Q ss_conf 7788-9999999821996679999748-999669999970466899978999999999998727972688988206788 Q gi|254780969|r 2 SMNP-HEIEKMIKKGIPQSIVTIHDLA-GDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPDS 78 (79) Q Consensus 2 ~m~~-~~I~~~i~~~l~~~~v~V~d~s-g~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpee 78 (79) .|+. +.|+++|.++|++..++|.|+| |+|+||.|+|||+.|+|+|+|+|||+||++|+++|+ +||||+|+|+||+| T Consensus 22 ~M~i~~~I~~kL~~~l~p~~leV~D~S~g~~~Hf~v~IvS~~F~g~s~i~RHR~Vy~~L~ee~~-~IHALsikt~Tp~E 99 (108) T 2kdn_A 22 HMCIQKVIEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQ-NIHAFSMKCHTPLE 99 (108) T ss_dssp SCSHHHHHHHHHHHHHCCSEEEEEECCCSSSCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGG-GCSCEEEEEECHHH T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEECCHHH T ss_conf 6539999999998558997689997899987679999982787799689999999999999971-24104878089999 No 7 >2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis} Probab=99.91 E-value=5.9e-25 Score=157.16 Aligned_cols=73 Identities=34% Similarity=0.742 Sum_probs=69.8 Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCC Q ss_conf 9778899999998219966799997489996699999704668999789999999999987279726889882067 Q gi|254780969|r 1 MSMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVP 76 (79) Q Consensus 1 M~m~~~~I~~~i~~~l~~~~v~V~d~sg~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tp 76 (79) |+|+.++|+++|+++||++.++|.|.||||+||.|.|||+.|+|+|+|+|||+||++|++ +.||||+|||++. T Consensus 4 m~~~~~~Ie~~l~~~~~~~~v~V~D~sg~g~hf~i~IvS~~F~g~s~v~rhr~V~~~L~~---~~iHAlsikT~~k 76 (76) T 2kz0_A 4 MTVTQSQLELLIRNAFPEAEITVTSLVGDNNHYSIKVISSQFQGKSKLEQHRMIYKVLDG---LNIHAIQIQTGCK 76 (76) T ss_dssp SSCTTHHHHHHHHHHCTTEEEEEECCSSTTSCCEEEEEEGGGTTCCHHHHHHHHHHHTTT---SCCCSSSEEECCC T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHCC---CCEEEEEEEECCC T ss_conf 877899999999955999889999655998679999972673999899999999998578---9718999985069 No 8 >1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1 Probab=99.90 E-value=9.4e-25 Score=156.03 Aligned_cols=74 Identities=31% Similarity=0.577 Sum_probs=70.1 Q ss_pred CCCHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEEECCCCC Q ss_conf 77889999999821996679999748999669999970466899978999999999998727-972688988206788 Q gi|254780969|r 2 SMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMG-NALHALSIKTSVPDS 78 (79) Q Consensus 2 ~m~~~~I~~~i~~~l~~~~v~V~d~sg~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~-~~IHAlsikt~tpee 78 (79) +|+.++|+++|.++||++.+.|. |||+||+|+|||+.|+|+|+|+|||+||++|+++|+ +.||||+|+|+||+| T Consensus 5 ~M~~~eI~~~L~~~l~~~~v~V~---g~gsHf~i~IvS~~F~g~s~v~RHr~Vy~~L~~~i~~g~IHALsikt~Tp~E 79 (97) T 1ny8_A 5 PMENNEIQSVLMNALSLQEVHVS---GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAE 79 (97) T ss_dssp CCCCHHHHHHHHHHHCCSEEEEE---ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEEEEECCHHH T ss_pred CCCHHHHHHHHHHHCCCCEEEEE---CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHH T ss_conf 57899999999953997189996---8983899999837768998899999999999998758971455878089999 No 9 >1ylq_A Putative nucleotidyltransferase, hypothetical protein AF0614; structural genomics, PSI, protein structure initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5 Probab=89.96 E-value=1 Score=23.70 Aligned_cols=68 Identities=12% Similarity=0.195 Sum_probs=49.9 Q ss_pred HHHHHHHHHHCCCCCEEEEEECC---C----CCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC Q ss_conf 89999999821996679999748---9----9966999997046689997899999999999872797268898820678 Q gi|254780969|r 5 PHEIEKMIKKGIPQSIVTIHDLA---G----DGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPD 77 (79) Q Consensus 5 ~~~I~~~i~~~l~~~~v~V~d~s---g----~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpe 77 (79) .++|++.+.+.++++.|-+.- | | ++|-+.+.|+++.+.+. ..|.+.....+..... +-+.+..+||+ T Consensus 4 lk~I~e~ik~~~~~~kV~LFG-S~ArG~~~~~~SDiDllVV~~~~~~~--~~~~~~~~~~~~~~~~---~pvdl~v~t~e 77 (96) T 1ylq_A 4 MKEIKEITKKDVQDAEIYLYG-SVVEGDYSIGLSDIDVAIVSDVFEDR--NRKLEFFGKITKKFFD---SPFEFHILTKK 77 (96) T ss_dssp HHHHHHHHHHHCTTCEEEEES-HHHHCCSSSCCCSEEEEEECGGGGSH--HHHHHHHHHHHHHTTT---CSEEEEEECHH T ss_pred HHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCCCCCCEEEEEECCCCCH--HHHHHHHHHHHHHHCC---CCEEEEECCHH T ss_conf 999999999868993899988-73158998888865699996788887--8999999999986179---98599984899 Q ss_pred C Q ss_conf 8 Q gi|254780969|r 78 S 78 (79) Q Consensus 78 e 78 (79) | T Consensus 78 e 78 (96) T 1ylq_A 78 E 78 (96) T ss_dssp H T ss_pred H T ss_conf 9 No 10 >2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} Probab=18.57 E-value=53 Score=14.29 Aligned_cols=65 Identities=14% Similarity=0.072 Sum_probs=38.8 Q ss_pred HHHHHHHHCCCC-CEEEEEE-----CCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC Q ss_conf 999999821996-6799997-----48999669999970466899978999999999998727972688988206788 Q gi|254780969|r 7 EIEKMIKKGIPQ-SIVTIHD-----LAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPDS 78 (79) Q Consensus 7 ~I~~~i~~~l~~-~~v~V~d-----~sg~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpee 78 (79) ++.+.+.+.+|. ..+-+.- ..+.+|-..+.|+++.+.+...+++...+.. .+... +.+-.+||+| T Consensus 21 e~i~~l~~~~~~i~~v~LFGS~ArG~~~~~SDIDl~Vi~~~~~~~~~~~~~~~l~~----~l~~~---vD~iv~t~~e 91 (111) T 2rff_A 21 EIVEEVASSFPNLEEVYIFGSRARGDYLDTSDIDILFVFKGIKEMNVFDRMYMVSR----FIRGN---VDYIVLDEGE 91 (111) T ss_dssp HHHHHHHHHCTTEEEEEEESHHHHSCCCTTCCEEEEEEESSCTTCCHHHHHHHHGG----GCCSS---EEEEEEEGGG T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHH----HCCCC---EEEEECCHHH T ss_conf 99999998669956999989766799899999799999679984149999999999----82998---6899889999 Done!