Query         gi|254780969|ref|YP_003065382.1| hypothetical protein CLIBASIA_04350 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 79
No_of_seqs    106 out of 1637
Neff          6.0 
Searched_HMMs 23785
Date          Tue May 31 23:50:23 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780969.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1xs3_A Hypothetical protein XC  99.9 4.7E-27   2E-31  168.7   5.7   76    1-78      4-79  (80)
  2 1v9j_A BOLA-like protein riken  99.9 7.7E-27 3.2E-31  167.5   4.7   77    1-78     28-106 (113)
  3 3o2e_A BOLA-like protein; ssgc  99.9 3.6E-26 1.5E-30  163.8   7.3   76    2-78     22-98  (105)
  4 2dhm_A Protein BOLA; stationar  99.9 2.3E-26 9.7E-31  164.9   5.5   76    3-78      9-91  (107)
  5 1v60_A BOLA1, riken cDNA 18100  99.9   4E-25 1.7E-29  158.1  10.5   74    5-78     28-108 (123)
  6 2kdn_A Putative uncharacterize  99.9 1.9E-25 7.8E-30  159.9   7.5   76    2-78     22-99  (108)
  7 2kz0_A BOLA family protein; BO  99.9 5.9E-25 2.5E-29  157.2   5.8   73    1-76      4-76  (76)
  8 1ny8_A Protein YRBA; structure  99.9 9.4E-25   4E-29  156.0   4.6   74    2-78      5-79  (97)
  9 1ylq_A Putative nucleotidyltra  90.0       1 4.4E-05   23.7   7.1   68    5-78      4-78  (96)
 10 2rff_A Putative nucleotidyltra  18.6      53  0.0022   14.3   4.3   65    7-78     21-91  (111)

No 1  
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}
Probab=99.93  E-value=4.7e-27  Score=168.72  Aligned_cols=76  Identities=39%  Similarity=0.764  Sum_probs=72.8

Q ss_pred             CCCCHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf             977889999999821996679999748999669999970466899978999999999998727972688988206788
Q gi|254780969|r    1 MSMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPDS   78 (79)
Q Consensus         1 M~m~~~~I~~~i~~~l~~~~v~V~d~sg~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpee   78 (79)
                      ++|+.++|+++|+++||++.++|.|  +||+||.|+|||+.|+|+|+|+|||+||++|+++|+++||||+|+|+||+|
T Consensus         4 ~~M~~~~I~~~l~~~l~~~~i~V~d--~~g~hf~v~IvS~~F~g~~~v~Rhr~Vy~~L~~~~~~~iHAlsi~t~tp~E   79 (80)
T 1xs3_A            4 RPLDAETIRKLIESGLPEARVDVQG--EDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQLKTLTPDE   79 (80)
T ss_dssp             SCCHHHHHHHHHHHHSSSCEEEEES--CTTSCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTTTCCSCCEEEEECGGG
T ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEC--CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             9989999999998349998899983--999889999963675999889999999999999976997247878078655


No 2  
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1
Probab=99.93  E-value=7.7e-27  Score=167.54  Aligned_cols=77  Identities=21%  Similarity=0.451  Sum_probs=74.4

Q ss_pred             CCCCHHHHHHHHHHCCCCCEEEEEECC--CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf             977889999999821996679999748--999669999970466899978999999999998727972688988206788
Q gi|254780969|r    1 MSMNPHEIEKMIKKGIPQSIVTIHDLA--GDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPDS   78 (79)
Q Consensus         1 M~m~~~~I~~~i~~~l~~~~v~V~d~s--g~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpee   78 (79)
                      |.|+++.|+++|++.|++..++|.|+|  |+|+||+|+|||+.|.|+++|+|||+||++|+++|+ +||||+|+|+||+|
T Consensus        28 m~~~~e~I~~kL~~~l~p~~leV~DeS~~h~G~Hf~i~IvS~~F~g~s~i~RHR~V~~~L~~~i~-~IHALsikt~Tp~E  106 (113)
T 1v9j_A           28 MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELP-HIHAFEQKTLTPEQ  106 (113)
T ss_dssp             SSSCHHHHHHHHHHHHTCSEEEEEECCSSSSCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGG-GCSSEEEEEECHHH
T ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHH-CCEEEEEEECCHHH
T ss_conf             76589999999984489818999978789888279999971787799668999999999999972-25004878189999


No 3  
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}
Probab=99.93  E-value=3.6e-26  Score=163.83  Aligned_cols=76  Identities=21%  Similarity=0.469  Sum_probs=71.8

Q ss_pred             CCCHHHHHHHHHHCCCCCEEEEEECC-CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf             77889999999821996679999748-999669999970466899978999999999998727972688988206788
Q gi|254780969|r    2 SMNPHEIEKMIKKGIPQSIVTIHDLA-GDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPDS   78 (79)
Q Consensus         2 ~m~~~~I~~~i~~~l~~~~v~V~d~s-g~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpee   78 (79)
                      .++.+.|+++|++.|+++.++|.|+| |||+||+|.|||+.|+|+|+|+|||+||++|+++|++ ||||+|+|+||+|
T Consensus        22 m~~~~~Ie~kL~~~l~~~~l~V~D~S~g~gsHf~i~IvS~~F~g~s~v~rhR~V~~~L~eei~~-IHAlsikt~Tp~E   98 (105)
T 3o2e_A           22 MVSKSIVEERLRSMLSPQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMPQ-IHAFTMKCLTPGE   98 (105)
T ss_dssp             CCCHHHHHHHHHHHHCCSEEEEEECCBTTBEEEEEEEECGGGTTCCHHHHHHHHHHHTTTTGGG-EEEEEEEEECHHH
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH-CCCEEEEECCHHH
T ss_conf             5239999999984489847999987899853489999846768997899999999999999850-3132777099999


No 4  
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural genomics, NPPSFA; NMR {Escherichia coli str}
Probab=99.92  E-value=2.3e-26  Score=164.91  Aligned_cols=76  Identities=22%  Similarity=0.517  Sum_probs=72.2

Q ss_pred             CCHHHHHHHHHHCCCCCEEEEEECC-------CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf             7889999999821996679999748-------999669999970466899978999999999998727972688988206
Q gi|254780969|r    3 MNPHEIEKMIKKGIPQSIVTIHDLA-------GDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSV   75 (79)
Q Consensus         3 m~~~~I~~~i~~~l~~~~v~V~d~s-------g~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~t   75 (79)
                      |..++|+++|++.|++..++|.|+|       |+++||.|.|||+.|+|+++|+|||+||++|+++|+++||||+|+|+|
T Consensus         9 ~~~~~I~~~L~~~~~~~~l~V~D~S~~H~~h~g~~~Hf~i~IvS~~F~g~s~i~rHR~V~~~L~~ei~~~IHALsik~~T   88 (107)
T 2dhm_A            9 MIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTYT   88 (107)
T ss_dssp             CHHHHHHHHHHHHTCCSCCEEEECCCCCSSCCCSCCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTTCCCCEEEEEC
T ss_pred             CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             89999999998418985799997877666889997279999986753688789999999999999971797536878389


Q ss_pred             CCC
Q ss_conf             788
Q gi|254780969|r   76 PDS   78 (79)
Q Consensus        76 pee   78 (79)
                      |+|
T Consensus        89 ~~E   91 (107)
T 2dhm_A           89 IKE   91 (107)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999


No 5  
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.92  E-value=4e-25  Score=158.10  Aligned_cols=74  Identities=20%  Similarity=0.541  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECC-------CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf             89999999821996679999748-------99966999997046689997899999999999872797268898820678
Q gi|254780969|r    5 PHEIEKMIKKGIPQSIVTIHDLA-------GDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPD   77 (79)
Q Consensus         5 ~~~I~~~i~~~l~~~~v~V~d~s-------g~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpe   77 (79)
                      ++.|+++|+++|++..++|.|+|       |+++||.|+|||+.|+|+++|+|||+||++|+++|+++||||+|+|+||+
T Consensus        28 e~~I~~kL~~~l~p~~leV~D~S~~H~~h~g~~sHf~i~IvS~~F~g~s~i~rHr~Vy~~L~~ei~~~iHALsik~~Tp~  107 (123)
T 1v60_A           28 EAAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGPVHALAIQAKTPA  107 (123)
T ss_dssp             HHHHHHHHHHHTCCSEEEEEECCCSSSCCTTCCSEEEEEEECGGGTTCCHHHHHHHHHHHTHHHHTTTCSEEEEEEECTT
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHH
T ss_conf             99999999850898379999788664767899857999998775479878999999999999997489733687818999


Q ss_pred             C
Q ss_conf             8
Q gi|254780969|r   78 S   78 (79)
Q Consensus        78 e   78 (79)
                      |
T Consensus       108 E  108 (123)
T 1v60_A          108 Q  108 (123)
T ss_dssp             T
T ss_pred             H
T ss_conf             9


No 6  
>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}
Probab=99.92  E-value=1.9e-25  Score=159.92  Aligned_cols=76  Identities=25%  Similarity=0.447  Sum_probs=70.8

Q ss_pred             CCCH-HHHHHHHHHCCCCCEEEEEECC-CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf             7788-9999999821996679999748-999669999970466899978999999999998727972688988206788
Q gi|254780969|r    2 SMNP-HEIEKMIKKGIPQSIVTIHDLA-GDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPDS   78 (79)
Q Consensus         2 ~m~~-~~I~~~i~~~l~~~~v~V~d~s-g~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpee   78 (79)
                      .|+. +.|+++|.++|++..++|.|+| |+|+||.|+|||+.|+|+|+|+|||+||++|+++|+ +||||+|+|+||+|
T Consensus        22 ~M~i~~~I~~kL~~~l~p~~leV~D~S~g~~~Hf~v~IvS~~F~g~s~i~RHR~Vy~~L~ee~~-~IHALsikt~Tp~E   99 (108)
T 2kdn_A           22 HMCIQKVIEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQ-NIHAFSMKCHTPLE   99 (108)
T ss_dssp             SCSHHHHHHHHHHHHHCCSEEEEEECCCSSSCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGG-GCSCEEEEEECHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEECCHHH
T ss_conf             6539999999998558997689997899987679999982787799689999999999999971-24104878089999


No 7  
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}
Probab=99.91  E-value=5.9e-25  Score=157.16  Aligned_cols=73  Identities=34%  Similarity=0.742  Sum_probs=69.8

Q ss_pred             CCCCHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf             9778899999998219966799997489996699999704668999789999999999987279726889882067
Q gi|254780969|r    1 MSMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVP   76 (79)
Q Consensus         1 M~m~~~~I~~~i~~~l~~~~v~V~d~sg~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tp   76 (79)
                      |+|+.++|+++|+++||++.++|.|.||||+||.|.|||+.|+|+|+|+|||+||++|++   +.||||+|||++.
T Consensus         4 m~~~~~~Ie~~l~~~~~~~~v~V~D~sg~g~hf~i~IvS~~F~g~s~v~rhr~V~~~L~~---~~iHAlsikT~~k   76 (76)
T 2kz0_A            4 MTVTQSQLELLIRNAFPEAEITVTSLVGDNNHYSIKVISSQFQGKSKLEQHRMIYKVLDG---LNIHAIQIQTGCK   76 (76)
T ss_dssp             SSCTTHHHHHHHHHHCTTEEEEEECCSSTTSCCEEEEEEGGGTTCCHHHHHHHHHHHTTT---SCCCSSSEEECCC
T ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHCC---CCEEEEEEEECCC
T ss_conf             877899999999955999889999655998679999972673999899999999998578---9718999985069


No 8  
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1
Probab=99.90  E-value=9.4e-25  Score=156.03  Aligned_cols=74  Identities=31%  Similarity=0.577  Sum_probs=70.1

Q ss_pred             CCCHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEEECCCCC
Q ss_conf             77889999999821996679999748999669999970466899978999999999998727-972688988206788
Q gi|254780969|r    2 SMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMG-NALHALSIKTSVPDS   78 (79)
Q Consensus         2 ~m~~~~I~~~i~~~l~~~~v~V~d~sg~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~-~~IHAlsikt~tpee   78 (79)
                      +|+.++|+++|.++||++.+.|.   |||+||+|+|||+.|+|+|+|+|||+||++|+++|+ +.||||+|+|+||+|
T Consensus         5 ~M~~~eI~~~L~~~l~~~~v~V~---g~gsHf~i~IvS~~F~g~s~v~RHr~Vy~~L~~~i~~g~IHALsikt~Tp~E   79 (97)
T 1ny8_A            5 PMENNEIQSVLMNALSLQEVHVS---GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAE   79 (97)
T ss_dssp             CCCCHHHHHHHHHHHCCSEEEEE---ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEEEEECCHHH
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEE---CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHH
T ss_conf             57899999999953997189996---8983899999837768998899999999999998758971455878089999


No 9  
>1ylq_A Putative nucleotidyltransferase, hypothetical protein AF0614; structural genomics, PSI, protein structure initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=89.96  E-value=1  Score=23.70  Aligned_cols=68  Identities=12%  Similarity=0.195  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECC---C----CCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf             89999999821996679999748---9----9966999997046689997899999999999872797268898820678
Q gi|254780969|r    5 PHEIEKMIKKGIPQSIVTIHDLA---G----DGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPD   77 (79)
Q Consensus         5 ~~~I~~~i~~~l~~~~v~V~d~s---g----~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpe   77 (79)
                      .++|++.+.+.++++.|-+.- |   |    ++|-+.+.|+++.+.+.  ..|.+.....+.....   +-+.+..+||+
T Consensus         4 lk~I~e~ik~~~~~~kV~LFG-S~ArG~~~~~~SDiDllVV~~~~~~~--~~~~~~~~~~~~~~~~---~pvdl~v~t~e   77 (96)
T 1ylq_A            4 MKEIKEITKKDVQDAEIYLYG-SVVEGDYSIGLSDIDVAIVSDVFEDR--NRKLEFFGKITKKFFD---SPFEFHILTKK   77 (96)
T ss_dssp             HHHHHHHHHHHCTTCEEEEES-HHHHCCSSSCCCSEEEEEECGGGGSH--HHHHHHHHHHHHHTTT---CSEEEEEECHH
T ss_pred             HHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCCCCCCEEEEEECCCCCH--HHHHHHHHHHHHHHCC---CCEEEEECCHH
T ss_conf             999999999868993899988-73158998888865699996788887--8999999999986179---98599984899


Q ss_pred             C
Q ss_conf             8
Q gi|254780969|r   78 S   78 (79)
Q Consensus        78 e   78 (79)
                      |
T Consensus        78 e   78 (96)
T 1ylq_A           78 E   78 (96)
T ss_dssp             H
T ss_pred             H
T ss_conf             9


No 10 
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=18.57  E-value=53  Score=14.29  Aligned_cols=65  Identities=14%  Similarity=0.072  Sum_probs=38.8

Q ss_pred             HHHHHHHHCCCC-CEEEEEE-----CCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf             999999821996-6799997-----48999669999970466899978999999999998727972688988206788
Q gi|254780969|r    7 EIEKMIKKGIPQ-SIVTIHD-----LAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPDS   78 (79)
Q Consensus         7 ~I~~~i~~~l~~-~~v~V~d-----~sg~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpee   78 (79)
                      ++.+.+.+.+|. ..+-+.-     ..+.+|-..+.|+++.+.+...+++...+..    .+...   +.+-.+||+|
T Consensus        21 e~i~~l~~~~~~i~~v~LFGS~ArG~~~~~SDIDl~Vi~~~~~~~~~~~~~~~l~~----~l~~~---vD~iv~t~~e   91 (111)
T 2rff_A           21 EIVEEVASSFPNLEEVYIFGSRARGDYLDTSDIDILFVFKGIKEMNVFDRMYMVSR----FIRGN---VDYIVLDEGE   91 (111)
T ss_dssp             HHHHHHHHHCTTEEEEEEESHHHHSCCCTTCCEEEEEEESSCTTCCHHHHHHHHGG----GCCSS---EEEEEEEGGG
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHH----HCCCC---EEEEECCHHH
T ss_conf             99999998669956999989766799899999799999679984149999999999----82998---6899889999


Done!