Query gi|254780969|ref|YP_003065382.1| hypothetical protein CLIBASIA_04350 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 79
No_of_seqs 106 out of 1637
Neff 6.0
Searched_HMMs 13730
Date Wed Jun 1 11:03:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780969.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v9ja_ d.52.6.1 (A:) BolA-lik 99.9 7.7E-27 5.6E-31 166.2 4.7 77 1-78 28-106 (113)
2 d1ny8a_ d.52.6.1 (A:) Hypothet 99.9 3.2E-25 2.4E-29 157.3 4.8 75 1-78 4-79 (97)
3 d1ylqa1 d.218.1.5 (A:1-90) Put 92.7 0.3 2.2E-05 25.3 7.7 68 6-78 2-75 (90)
4 d1ubdc2 g.37.1.1 (C:323-350) Y 19.7 5.3 0.00039 18.5 -1.5 16 40-55 10-25 (28)
5 d2fa8a1 c.47.1.23 (A:4-89) Hyp 13.6 41 0.003 13.6 1.8 33 5-37 19-51 (86)
6 d2j7ja2 g.37.1.1 (A:29-57) Tra 11.8 28 0.002 14.5 0.5 18 39-56 12-29 (29)
7 d2pzza1 d.77.1.2 (A:2-134) Hyp 11.4 49 0.0036 13.2 3.3 56 4-62 14-70 (133)
8 d1b79a_ a.81.1.1 (A:) N-termin 11.1 50 0.0036 13.1 2.1 18 48-65 36-53 (102)
9 d1ghha_ d.57.1.1 (A:) DNA dama 9.5 58 0.0042 12.8 3.2 49 5-63 22-72 (81)
10 d1znfa_ g.37.1.1 (A:) XFIN, th 7.9 15 0.0011 16.0 -2.2 17 40-56 8-24 (26)
No 1
>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.93 E-value=7.7e-27 Score=166.24 Aligned_cols=77 Identities=21% Similarity=0.451 Sum_probs=74.3
Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEEECC--CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf 977889999999821996679999748--999669999970466899978999999999998727972688988206788
Q gi|254780969|r 1 MSMNPHEIEKMIKKGIPQSIVTIHDLA--GDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPDS 78 (79)
Q Consensus 1 M~m~~~~I~~~i~~~l~~~~v~V~d~s--g~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpee 78 (79)
|++++++|+++|++.|++.+++|.|+| |+|+||+|+|||+.|.|+|+|+|||+||++|+++|+ +||||+|+|+||+|
T Consensus 28 m~~~~e~I~~kL~~~~~~~~leV~D~S~~h~G~Hf~i~IvS~~F~g~s~v~rHr~Vy~~L~~ei~-~iHAlsi~t~Tp~E 106 (113)
T d1v9ja_ 28 MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELP-HIHAFEQKTLTPEQ 106 (113)
T ss_dssp SSSCHHHHHHHHHHHHTCSEEEEEECCSSSSCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGG-GCSSEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH-CCEEEEEEECCHHH
T ss_conf 76369999999984489837999966789987059999986021477440788947999999972-04204878189999
No 2
>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}
Probab=99.90 E-value=3.2e-25 Score=157.28 Aligned_cols=75 Identities=31% Similarity=0.556 Sum_probs=70.9
Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEEECCCCC
Q ss_conf 977889999999821996679999748999669999970466899978999999999998727-972688988206788
Q gi|254780969|r 1 MSMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMG-NALHALSIKTSVPDS 78 (79)
Q Consensus 1 M~m~~~~I~~~i~~~l~~~~v~V~d~sg~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~-~~IHAlsikt~tpee 78 (79)
++|+.++|+++|.++|+++.+.|. |||+||.|.|||+.|+|+|+|+|||+||++|+++|+ +.||||+|+|+||+|
T Consensus 4 ~~M~~~eI~~~L~~~l~~~~v~V~---g~g~hf~i~IvS~~F~g~s~v~RHr~Vy~~L~~~i~~g~IHAlsikt~Tp~E 79 (97)
T d1ny8a_ 4 DPMENNEIQSVLMNALSLQEVHVS---GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAE 79 (97)
T ss_dssp CCCCCHHHHHHHHHHHCCSEEEEE---ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEEEEECCHHH
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEE---CCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHH
T ss_conf 768899999999953997489995---7985799999837768998899999999999998747973311757289999
No 3
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=92.70 E-value=0.3 Score=25.32 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=53.0
Q ss_pred HHHHHHHHHCCCCCEEEEEEC-----CC-CCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf 999999982199667999974-----89-99669999970466899978999999999998727972688988206788
Q gi|254780969|r 6 HEIEKMIKKGIPQSIVTIHDL-----AG-DGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKTSVPDS 78 (79)
Q Consensus 6 ~~I~~~i~~~l~~~~v~V~d~-----sg-~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~~~IHAlsikt~tpee 78 (79)
++|++.+.+.++++.|-+.-. .. ++|-..+.||++.+. +..+|.+.+...+..... +-+.+..+||+|
T Consensus 2 ~~i~e~ik~~~~~~kViLFGS~ArG~~~~~~SDiDllVV~~~~~--~~~~r~~~~~~~~~~~~~---~pvd~~v~tpee 75 (90)
T d1ylqa1 2 KEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDVFE--DRNRKLEFFGKITKKFFD---SPFEFHILTKKE 75 (90)
T ss_dssp HHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGGGG--SHHHHHHHHHHHHHHTTT---CSEEEEEECHHH
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCC--CHHHHHHHHHHHHHHCCC---CCEEEEECCHHH
T ss_conf 78999999878995899987620389878888657999967888--988999999999864369---984899818999
No 4
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.68 E-value=5.3 Score=18.47 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=13.1
Q ss_pred HHHCCCCHHHHHHHHH
Q ss_conf 4668999789999999
Q gi|254780969|r 40 EEFRGKNRIQQHQMVY 55 (79)
Q Consensus 40 ~~F~g~s~i~rhr~Vy 55 (79)
+.|..-++++||++|.
T Consensus 10 kaf~essklkrh~lvh 25 (28)
T d1ubdc2 10 KAFVESSKLKRHQLVH 25 (28)
T ss_dssp CEESSHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999898877775100
No 5
>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=13.58 E-value=41 Score=13.57 Aligned_cols=33 Identities=9% Similarity=0.167 Sum_probs=21.8
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 899999998219966799997489996699999
Q gi|254780969|r 5 PHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEI 37 (79)
Q Consensus 5 ~~~I~~~i~~~l~~~~v~V~d~sg~~~Hf~i~V 37 (79)
+.++...|...|++...+|.-..+.+..|+|.|
T Consensus 19 a~wlaqeLl~tF~~~i~evsL~P~~~G~FeV~v 51 (86)
T d2fa8a1 19 AGWMAQEILQTFASDIGEVSLIPSTGGLFEITV 51 (86)
T ss_dssp HHHHHHHHHHHHGGGCSEEEEEEECTTCEEEEE
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEE
T ss_conf 999999999867766761999988991799998
No 6
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=11.81 E-value=28 Score=14.50 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=13.7
Q ss_pred CHHHCCCCHHHHHHHHHH
Q ss_conf 046689997899999999
Q gi|254780969|r 39 SEEFRGKNRIQQHQMVYD 56 (79)
Q Consensus 39 S~~F~g~s~i~rhr~Vy~ 56 (79)
...|.--|+++||-.|.+
T Consensus 12 dk~fs~ps~lkrhekvha 29 (29)
T d2j7ja2 12 DKRFSLPSRLKRHEKVHA 29 (29)
T ss_dssp CCEESSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCC
T ss_conf 522227788865144039
No 7
>d2pzza1 d.77.1.2 (A:2-134) Hypotheical protein MJ1564 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=11.39 E-value=49 Score=13.18 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHCCCCCEEEEEECCCCCCEEE-EEEECHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8899999998219966799997489996699-9997046689997899999999999872
Q gi|254780969|r 4 NPHEIEKMIKKGIPQSIVTIHDLAGDGNHYA-AEIISEEFRGKNRIQQHQMVYDSLGNKM 62 (79)
Q Consensus 4 ~~~~I~~~i~~~l~~~~v~V~d~sg~~~Hf~-i~VvS~~F~g~s~i~rhr~Vy~~L~~~i 62 (79)
+.+.+..-|.+-||+..+++.+..| ||. +.-.+.+++..-.+=|.+.+-+...+.|
T Consensus 14 D~ekV~~Ai~nifPd~~~~~~e~~~---~~~~~~~~~~sl~~~~~~lr~~~ildtar~~l 70 (133)
T d2pzza1 14 DKYKVKKAILNIFPKAKLTFIEKDN---EFGEWEGKTKSVEKLKELLRSQSILDAARMVL 70 (133)
T ss_dssp CHHHHHHHHHHHCTTCEEEEEECST---TCEEEEEEESCCHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCC---CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9899999999868998643333578---65256512433999999998730589999999
No 8
>d1b79a_ a.81.1.1 (A:) N-terminal domain of DnaB helicase {Escherichia coli [TaxId: 562]}
Probab=11.12 E-value=50 Score=13.13 Aligned_cols=18 Identities=6% Similarity=0.305 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 899999999999872797
Q gi|254780969|r 48 IQQHQMVYDSLGNKMGNA 65 (79)
Q Consensus 48 i~rhr~Vy~~L~~~i~~~ 65 (79)
..+||.||+++.+....+
T Consensus 36 ~~~h~~If~ai~~l~~~g 53 (102)
T d1b79a_ 36 TRPHRHIFTEMARLQESG 53 (102)
T ss_dssp SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 198999999999985069
No 9
>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
Probab=9.46 E-value=58 Score=12.78 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=30.1
Q ss_pred HHHHHHHHHHCCCCCE--EEEEECCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 8999999982199667--9999748999669999970466899978999999999998727
Q gi|254780969|r 5 PHEIEKMIKKGIPQSI--VTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMG 63 (79)
Q Consensus 5 ~~~I~~~i~~~l~~~~--v~V~d~sg~~~Hf~i~VvS~~F~g~s~i~rhr~Vy~~L~~~i~ 63 (79)
..|+..+|...||++. |.|.- +....+.|. |-+.=++ ..|..+|.+-..
T Consensus 22 ~~EL~kRl~~~fpD~~~~v~Vr~--~sa~~lsv~-------g~~k~dK-~~i~~iLqE~wE 72 (81)
T d1ghha_ 22 AGELSRRIQYAFPDNEGHVSVRY--AAANNLSVI-------GATKEDK-QRISEILQETWE 72 (81)
T ss_dssp HHHHHHHHHHHCSSSCCEEEEEE--ESSCEEEEE-------SCCHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCEEEEEE--CCCCCCEEC-------CCCHHHH-HHHHHHHHHHHH
T ss_conf 99999988735899754079865--588961534-------8874139-999999999986
No 10
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}
Probab=7.91 E-value=15 Score=16.04 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=13.2
Q ss_pred HHHCCCCHHHHHHHHHH
Q ss_conf 46689997899999999
Q gi|254780969|r 40 EEFRGKNRIQQHQMVYD 56 (79)
Q Consensus 40 ~~F~g~s~i~rhr~Vy~ 56 (79)
.+|-.+|.+.||+.|.+
T Consensus 8 rsfveksalsrhqrvhk 24 (26)
T d1znfa_ 8 RSFVEKSALSRHQRVHK 24 (26)
T ss_dssp CBCSSHHHHHHHGGGTC
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 88888988878987632
Done!