RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780969|ref|YP_003065382.1| hypothetical protein
CLIBASIA_04350 [Candidatus Liberibacter asiaticus str. psy62]
         (79 letters)



>gnl|CDD|183243 PRK11628, PRK11628, transcriptional regulator BolA; Provisional.
          Length = 105

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 14/47 (29%), Positives = 30/47 (63%)

Query: 27 AGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGNKMGNALHALSIKT 73
          AG  +H+   ++S+ F G+  + +H+M+Y +L  ++   +HAL++ T
Sbjct: 33 AGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHT 79


>gnl|CDD|183414 PRK12296, obgE, GTPase CgtA; Reviewed.
          Length = 500

 Score = 26.0 bits (58), Expect = 2.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 21 VTIHDLAGDGNHYAAEIISEEFR 43
          V +H  AGDG +  A +  E+F+
Sbjct: 8  VVLHVKAGDGGNGCASVHREKFK 30


>gnl|CDD|181197 PRK08013, PRK08013, oxidoreductase; Provisional.
          Length = 400

 Score = 25.8 bits (57), Expect = 2.4
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 9/38 (23%)

Query: 22  TIHDLAGDGNHY----AAEIISEEFR----GKNRIQQH 51
           TIH LAG G +     AAE+I+E  R    GK+ I QH
Sbjct: 293 TIHPLAGQGVNLGFMDAAELIAELRRLHRQGKD-IGQH 329


>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
          Length = 459

 Score = 25.8 bits (57), Expect = 2.9
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 4   NPHEI-EKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKN 46
           +P  + + +I+ GI         L GDG H  A  I +E R + 
Sbjct: 164 DPKVMVDTLIRHGINILFT----LGGDGTHRGALAIYKELRRRK 203


>gnl|CDD|148912 pfam07559, FlaE, Flagellar basal body protein FlaE.  This family
          consists of several bacterial FlaE flagellar proteins.
          These proteins are part of the flageller basal body rod
          complex.
          Length = 117

 Score = 25.1 bits (55), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 54 VYDSLGNK 61
          VYDSLGNK
Sbjct: 17 VYDSLGNK 24


>gnl|CDD|180736 PRK06860, PRK06860, lipid A biosynthesis lauroyl acyltransferase;
           Provisional.
          Length = 309

 Score = 24.5 bits (54), Expect = 6.5
 Identities = 6/16 (37%), Positives = 7/16 (43%), Gaps = 1/16 (6%)

Query: 3   MNPHEIEKMIKKGIPQ 18
           MN   +EK I     Q
Sbjct: 275 MN-KVVEKCILMAPEQ 289


>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase.  Members of this
           protein family are 1-pyrroline dehydrogenase (1.5.1.35),
           also called gamma-aminobutyraldehyde dehydrogenase. This
           enzyme can follow putrescine transaminase (EC 2.6.1.82)
           for a two-step conversion of putrescine to
           gamma-aminobutyric acid (GABA). The member from
           Escherichia coli is characterized as a homotetramer that
           binds one NADH per momomer. This enzyme belongs to the
           medium-chain aldehyde dehydrogenases, and is quite
           similar in sequence to the betaine aldehyde
           dehydrogenase (EC 1.2.1.8) family.
          Length = 472

 Score = 24.2 bits (52), Expect = 7.7
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 47  RIQQHQMVYDSLGNKMGNALHALSIKTSVPDSQ 79
           RI   + +YD+L  K+G A+  L  K+  PD +
Sbjct: 284 RIYAQRGIYDTLVEKLGAAVATL--KSGAPDDE 314


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.314    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0559    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,265,206
Number of extensions: 65303
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 21
Length of query: 79
Length of database: 5,994,473
Length adjustment: 49
Effective length of query: 30
Effective length of database: 4,935,681
Effective search space: 148070430
Effective search space used: 148070430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.4 bits)