RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780969|ref|YP_003065382.1| hypothetical protein
CLIBASIA_04350 [Candidatus Liberibacter asiaticus str. psy62]
(79 letters)
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic
ehrlichiosis, STRE response, structural genomics; NMR
{Ehrlichia chaffeensis}
Length = 76
Score = 95.1 bits (237), Expect = 4e-21
Identities = 25/75 (33%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 1 MSMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGN 60
M++ ++E +I+ P++ +T+ L GD NHY+ ++IS +F+GK++++QH+M+Y L
Sbjct: 4 MTVTQSQLELLIRNAFPEAEITVTSLVGDNNHYSIKVISSQFQGKSKLEQHRMIYKVLDG 63
Query: 61 KMGNALHALSIKTSV 75
+HA+ I+T
Sbjct: 64 LN---IHAIQIQTGC 75
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN
integrated structural and functional genomic project,
unknown function; NMR {Synthetic}
Length = 80
Score = 92.1 bits (229), Expect = 3e-20
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 1 MSMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGN 60
++ I K+I+ G+P++ V + DG H+ A ++S F GK + +H+MVY +LG
Sbjct: 4 RPLDAETIRKLIESGLPEARVDVQG--EDGVHFEATVVSPAFVGKAPLARHRMVYATLGE 61
Query: 61 KMGNALHALSIKTSVPD 77
MG A+HAL +KT PD
Sbjct: 62 LMGGAIHALQLKTLTPD 78
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG,
structural genomics, PSI, protein structure initiative;
NMR {Escherichia coli} SCOP: d.52.6.1
Length = 97
Score = 78.7 bits (194), Expect = 3e-16
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 1 MSMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGN 60
M +EI+ ++ + V + GDG+H+ + E F G +R+++ Q VY L
Sbjct: 4 DPMENNEIQSVLMNALSLQEVHVS---GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLME 60
Query: 61 KMG-NALHALSIKTSVPD 77
+ N +HA+SIK P
Sbjct: 61 YIADNRIHAVSIKAYTPA 78
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom
center for infectious disease, BOL like protein,
unknown FU; 1.95A {Babesia bovis}
Length = 105
Score = 72.2 bits (177), Expect = 3e-14
Identities = 16/78 (20%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 1 MSMNPHEIEKMIKKGIPQSIVTIHDL-AGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLG 59
++ +E+ ++ + + + D G G + A I+S++F GK + + ++V ++
Sbjct: 21 SMVSKSIVEERLRSMLSPQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIA 80
Query: 60 NKMGNALHALSIKTSVPD 77
+M +HA ++K P
Sbjct: 81 AEMPQ-IHAFTMKCLTPG 97
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase
morphogene, stress-induced morphogene, structural
genomics; NMR {Mus musculus} SCOP: d.52.6.1
Length = 113
Score = 69.5 bits (170), Expect = 2e-13
Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 1 MSMNPHEIEKMIKKGIPQSIVTIHD--LAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSL 58
M ++ + + +++ + V + D L + ++S +F GK +Q+H++V + L
Sbjct: 28 MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECL 87
Query: 59 GNKMGNALHALSIKTSVPD 77
++ + +HA KT P+
Sbjct: 88 AEELPH-IHAFEQKTLTPE 105
>2kdn_A Putative uncharacterized protein PFE0790C; solution structure,
ssgcid, seattle structural genomics center for
infectious disease; NMR {Plasmodium falciparum}
Length = 108
Score = 67.5 bits (165), Expect = 8e-13
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 1 MSMNPHEIEKMIKKGIPQSIVTIHDL-AGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLG 59
M + IE + + + + + D G G + A I+S F K + +H++V L
Sbjct: 23 MCIQ-KVIEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILK 81
Query: 60 NKMGNALHALSIKTSVPD 77
++ N +HA S+K P
Sbjct: 82 EELQN-IHAFSMKCHTPL 98
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 123
Score = 67.2 bits (164), Expect = 9e-13
Identities = 16/78 (20%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 7 EIEKMIKKGIPQSIVTIHD-------LAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLG 59
I +++ + ++ + + AG H+ ++S F G + +Q+H++V+++L
Sbjct: 30 AIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRLVHEALS 89
Query: 60 NKMGNALHALSIKTSVPD 77
++ +HAL+I+ P
Sbjct: 90 EELAGPVHALAIQAKTPA 107
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene,
structural genomics, NPPSFA; NMR {Escherichia coli str}
Length = 107
Score = 66.0 bits (161), Expect = 2e-12
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 1 MSMNPHEIEKMIKKGIPQSIVTIHD-------LAGDGNHYAAEIISEEFRGKNRIQQHQM 53
M IE+ ++ + + D AG +H+ ++S+ F G+ + +H+M
Sbjct: 7 GMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRM 66
Query: 54 VYDSLGNKMGNALHALSIKTSVPD 77
+Y +L ++ +HAL++ T
Sbjct: 67 IYSTLAEELSTTVHALALHTYTIK 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 34.9 bits (80), Expect = 0.005
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 12/50 (24%)
Query: 32 HY---AAEIISEEFRGKNR-IQQHQM---VYDSL-GNKM----GNALHAL 69
H A+++I+++ N + VYD+ G+ + G+ +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Score = 29.9 bits (67), Expect = 0.15
Identities = 20/100 (20%), Positives = 29/100 (29%), Gaps = 41/100 (41%)
Query: 1 MSMNPHEIEKMIK--KGIPQSIVTIHDLAGDGNHYAAEIIS-----EEFRGKN------- 46
+ P E+ +K G Q +VT A I+ E F +
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVT-----------AV-AIAETDSWESFF-VSVRKAITV 302
Query: 47 ------RIQQH--------QMVYDSLGNKMGNALHALSIK 72
R + ++ DSL N G LSI
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 1.7
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 10/37 (27%)
Query: 41 EFRGKNRIQQHQMVY--DSLGNKMGNALHALSIKTSV 75
E + ++Q +Y DS A AL+IK ++
Sbjct: 18 EKQALKKLQASLKLYADDS-------A-PALAIKATM 46
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 26.2 bits (57), Expect = 1.8
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 45 KNRIQQHQMVYDSLGNKMGNALHALSIKT 73
KN LG GNA+ + K
Sbjct: 1532 KNESDVICQQLKHLGRTKGNAVLGIFQKY 1560
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural
genomics consortium, SGC, alternative splicing, GTPase
activation, phosphoprotein; 2.30A {Homo sapiens}
Length = 310
Score = 25.5 bits (55), Expect = 2.9
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 1 MSMNPHEIEKMIKKGIPQSI 20
+ P + ++K G+P+++
Sbjct: 19 LGARPKGLSTLVKSGVPEAL 38
>3iyl_A Outer capsid VP4; non-enveloped virus, membrane penetration
protein, autocleav myristol group, icosahedral virus;
HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_I
Length = 648
Score = 24.9 bits (53), Expect = 4.3
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 15 GIPQSIVTIHDLAGDGNHYAAE 36
G Q+ V +++ GDGN +
Sbjct: 2 GNVQTSVNTYNITGDGNSFTPT 23
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.50A
{Prochlorococcus marinus subsp} SCOP: a.80.1.2
Length = 213
Score = 23.7 bits (51), Expect = 9.3
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 45 KNRIQQHQMVYDSLGNKMGNALHAL--SIKTSVPDS 78
++ IQ+ +VYD G + + A SI+ S PD+
Sbjct: 18 EDSIQKKNIVYDKNGQNHFDVISAFIKSIRGSDPDA 53
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.314 0.130 0.364
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 669,977
Number of extensions: 26156
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 25
Length of query: 79
Length of database: 5,693,230
Length adjustment: 48
Effective length of query: 31
Effective length of database: 4,529,518
Effective search space: 140415058
Effective search space used: 140415058
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.3 bits)