RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780969|ref|YP_003065382.1| hypothetical protein
CLIBASIA_04350 [Candidatus Liberibacter asiaticus str. psy62]
         (79 letters)



>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli
          [TaxId: 562]}
          Length = 97

 Score = 76.0 bits (187), Expect = 7e-16
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 1  MSMNPHEIEKMIKKGIPQSIVTIHDLAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSLGN 60
            M  +EI+ ++   +    V +    GDG+H+    + E F G +R+++ Q VY  L  
Sbjct: 4  DPMENNEIQSVLMNALSLQEVHVS---GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLME 60

Query: 61 KMG-NALHALSIKTSVPD 77
           +  N +HA+SIK   P 
Sbjct: 61 YIADNRIHAVSIKAYTPA 78


>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 113

 Score = 66.8 bits (163), Expect = 5e-13
 Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 1   MSMNPHEIEKMIKKGIPQSIVTIHD--LAGDGNHYAAEIISEEFRGKNRIQQHQMVYDSL 58
           M ++   + + +++ +    V + D  L      +   ++S +F GK  +Q+H++V + L
Sbjct: 28  MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECL 87

Query: 59  GNKMGNALHALSIKTSVPD 77
             ++ + +HA   KT  P+
Sbjct: 88  AEELPH-IHAFEQKTLTPE 105


>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
          Length = 967

 Score = 23.4 bits (50), Expect = 5.9
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 36  EIISEEFRGKNRI---QQHQMVYDSLGNKMGN 64
           E + + F G   I   Q  + VYD+L NK+G 
Sbjct: 608 EAVPDFFAGGEDILILQLIRAVYDTLSNKLGR 639


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 288,917
Number of extensions: 11384
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 9
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.0 bits)