HHsearch alignment for GI: 254780970 and conserved domain: COG1973
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].
Probab=99.57 E-value=6e-14 Score=114.57 Aligned_cols=256 Identities=17% Similarity=0.273 Sum_probs=166.0
Q ss_pred CCCC--CCCCCEEEECCCCCCEEEEECCC-CCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHH
Q ss_conf 0001--35763142037776227973045-32100001001135678977764102785102232210245666862134
Q gi|254780970|r 430 IQLP--GGDAGVIRVEGHETKALAFSSDV-TPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMG 506 (737)
Q Consensus 430 v~~P--g~DaaVv~~~~~~~~gia~s~g~-~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e~~~ 506 (737)
T Consensus 105 ~vs~ee~DDaGvvr~~~---~yivvaiDGiHSRLSe-fPFLaGFhvtRAalRDv~vmGa~p~alisDiHlaD---DgDVg 177 (449)
T COG1973 105 VVSPEELDDAGVVRIEN---DYIVVAIDGIHSRLSE-FPFLAGFHVTRAALRDVYVMGARPVALISDIHLAD---DGDVG 177 (449)
T ss_pred CCCHHHCCCCCEEEECC---CEEEEEECCHHHHHHC-CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC---CCCHH
T ss_conf 06887847777277358---6699994133433112-75122468779999889872764303356556336---75465
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CC---CCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCC
Q ss_conf 69999999985221028866544320011236866-67---631112222333520233102143898075137766554
Q gi|254780970|r 507 QFVHSVKGIREACQILDFPIVSGNVSFYNETNGQS-IF---PTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHL 582 (737)
Q Consensus 507 ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~-I~---pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~L 582 (737)
T Consensus 178 klfDf~AGvtaVsea~~vPl~aGST----LRiGGDmVlGdRl~~~Vg~iGi~k--~~~t~Rr~~~~Gd~IlmTE---GaG 248 (449)
T COG1973 178 KLFDFTAGVTAVSEAVGVPLLAGST----LRIGGDMVLGDRLVGAVGAIGISK--SELTPRRRAEPGDVILMTE---GAG 248 (449)
T ss_pred HHHHHHHHHHHHHHHHCCCEECCCC----EEECCEEEEECHHHCCCCEEEEEC--CCCCHHCCCCCCCEEEEEC---CCC
T ss_conf 6301221265788874885433652----577472676040103210256505--8887010388887799942---788
Q ss_pred CHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC---EEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC-
Q ss_conf 3267888861-167899964798999999999999999598---06994648657999999998458970899805666-
Q gi|254780970|r 583 DCSMYSLECA-SSNIGPPPKVDCHLEKNHGFFVLSMINAKK---ITACHDISTGGLIITLAEMTISSAKGMDIILPIEI- 657 (737)
Q Consensus 583 ggS~~~~~~~-~~~~g~~p~~d~~~~k~~~~~v~~li~~g~---I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~- 657 (737)
T Consensus 249 GGTi~TTAiY~Gm~DVv~ETlnv~f----i~a~eai~~s~L~~~vhsMTDVTNGGiRgDA~EISkta~v~lvfDeekv~s 324 (449)
T COG1973 249 GGTIATTAIYHGMHDVVEETLNVDF----IRACEAIVRSGLLSDVHSMTDVTNGGIRGDALEISKTAGVSLVFDEEKVRS 324 (449)
T ss_pred CCEEEHHHHHCCCHHHHHHHCCHHH----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEEECHHHHHH
T ss_conf 8553314445162788887627489----999999998505665345430547761443787655327269971899986
Q ss_pred CCCH--HHHH-------HCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 8987--8887-------2988321899996880998999998579849998998798
Q gi|254780970|r 658 EKDP--KPFL-------FGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGS 705 (737)
Q Consensus 658 ~~d~--~~~L-------FsEs~Gr~ii~V~~~~~~~~~~~~~~~gi~~~~IG~Vt~~ 705 (737)
T Consensus 325 liNpkVl~MLeel~ID~lGvSiDslmii~ped~a~~v~k~~~~agvr~~~vG~Vee~ 381 (449)
T COG1973 325 LINPKVLKMLEELNIDPLGVSIDSLMIIAPEDVADLVKKALRGAGVRAEEVGRVEEG 381 (449)
T ss_pred HCCHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 409899999997188843020201789666131699999987458623688666327