HHsearch alignment for GI: 254780970 and conserved domain: TIGR00476
>TIGR00476 selD selenide, water dikinase; InterPro: IPR004536 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide, water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence scoring above the trusted cut-off but not aligning to the beginning of the HMM is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence.; GO: 0004756 selenide water dikinase activity, 0005524 ATP binding.
Probab=99.82 E-value=4.8e-19 Score=149.53 Aligned_cols=252 Identities=21% Similarity=0.270 Sum_probs=173.7
Q ss_pred CCCCCEEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCC--CHHHHHHHH
Q ss_conf 357631420377762279730453210000100113567897776410278510223221024566686--213469999
Q gi|254780970|r 434 GGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKE--EIMGQFVHS 511 (737)
Q Consensus 434 g~DaaVv~~~~~~~~gia~s~g~~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~--e~~~ql~~a 511 (737)
T Consensus 57 mDdA~v~~~~--nG~~~v~T~D~~~PiVd-dPY~~G~IAaaN~~SDiYAMG~~~i~~~l~~~~~~~kL~drer~~v~Rev 133 (372)
T TIGR00476 57 MDDAAVYERH--NGLSLVKTVDVITPIVD-DPYLFGRIAAANALSDIYAMGGLPIVALLILVGVSNKLSDRERIEVVREV 133 (372)
T ss_pred CCCCEEEECC--CCEEEEEEEEEEEEEEC-CHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCCCCCCCHHHHH
T ss_conf 3431135317--98899996338983256-83554489987567777743773210143330356668754442010687
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHH
Q ss_conf 99998522102886654432001123686667631112--2223335202331021438980751377665543267888
Q gi|254780970|r 512 VKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIA--GVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSL 589 (737)
Q Consensus 512 v~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~--~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~LggS~~~~ 589 (737)
T Consensus 134 ~~G~~d~~reakt~~~GGh------til---~pwp~~Gg~vtgv~~~-~~~~~~~~a~~G~~L~L---TKP-LGtqv~~~ 199 (372)
T TIGR00476 134 IKGFKDACREAKTALVGGH------TIL---NPWPVFGGAVTGVCPE-EEVITKSGAQVGDVLIL---TKP-LGTQVLVA 199 (372)
T ss_pred HHHHHHHHHHCCEEEECCE------EEC---CCCCCCCCEEEEECCC-CCEECCCCCCCCCEEEE---ECC-CHHHHHHH
T ss_conf 7658888876890797362------112---7620005406310278-84752588742416785---175-16899998
Q ss_pred HHHC----CCC-----CC-CCCCCHHHHHH------HH-------HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 8611----678-----99-96479899999------99-------99999999598069946486579999999984589
Q gi|254780970|r 590 ECAS----SNI-----GP-PPKVDCHLEKN------HG-------FFVLSMINAKKITACHDISTGGLIITLAEMTISSA 646 (737)
Q Consensus 590 ~~~~----~~~-----g~-~p~~d~~~~k~------~~-------~~v~~li~~g~I~S~HDiSdGGL~~aL~EMa~as~ 646 (737)
T Consensus 200 ~~~~~~~~~~~nkik~~i~~ee~~~~~~~A~e~M~~~Nryalkal~~A~~~~~~~~~~A~TDvTGFGlLGH~~~~ak~~~ 279 (372)
T TIGR00476 200 VEKKLDIFKDLNKIKLSILKEERELIINEAIENMARLNRYALKALRKAAELMNSKDAKALTDVTGFGLLGHAQEMAKNSN 279 (372)
T ss_pred HHHCCCCHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCC
T ss_conf 76311200110414678607527889989999999888999999999887664418715311456545688999874078
Q ss_pred CCEEEEE---CCCCCC------------------------------CHHHHHHCC--CCCCEEEEECHHHHHHHHH-HHH
Q ss_conf 7089980---566689------------------------------878887298--8321899996880998999-998
Q gi|254780970|r 647 KGMDIIL---PIEIEK------------------------------DPKPFLFGE--DQGRYVVCISPENQDLVMS-EAN 690 (737)
Q Consensus 647 ~G~~I~L---~~~~~~------------------------------d~~~~LFsE--s~Gr~ii~V~~~~~~~~~~-~~~ 690 (737)
T Consensus 280 ~~~~~~~e~lP~l~~~~~~~k~~~~~~G~~~g~~~~~~G~L~~~~~~~~~~ll~~~~~S~~y~~~~~~~~~~~v~~G~~~ 359 (372)
T TIGR00476 280 VEARIVYEKLPVLKKVEELSKLKGVPLGAIEGLETAGSGLLLSELPREKAALLCDPVKSGGYLFEVQKEVKEKVEKGTAK 359 (372)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 66999953088735457889863243312135421267422135707898642610105135776668885111010134
Q ss_pred HCCCCEEEEEEE
Q ss_conf 579849998998
Q gi|254780970|r 691 NKNIPLRYLGKV 702 (737)
Q Consensus 691 ~~gi~~~~IG~V 702 (737)
T Consensus 360 ~~~v~~~~IgE~ 371 (372)
T TIGR00476 360 EKEVELIEIGEV 371 (372)
T ss_pred HHHCCEEEEEEE
T ss_conf 330450254310