HHsearch alignment for GI: 254780970 and conserved domain: TIGR00476
>TIGR00476 selD selenide, water dikinase; InterPro: IPR004536 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide, water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence scoring above the trusted cut-off but not aligning to the beginning of the HMM is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence.; GO: 0004756 selenide water dikinase activity, 0005524 ATP binding.
Probab=99.49 E-value=3.1e-13 Score=109.74 Aligned_cols=269 Identities=19% Similarity=0.251 Sum_probs=184.1
Q ss_pred CCCEEEC--CC------CCEEEEEECCCEEEEEEECCCCCCCCCCCC-CC--CCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 9748993--34------773689836983999995178877765888-87--2105581022576778743687750457
Q gi|254780970|r 64 GKHVIQG--PG------ENAGVVDIGGGDCVVFKMESHNHPSYIEPY-QG--AATGVGGILRDIFTMGARPVAAMNSLRF 132 (737)
Q Consensus 64 ~~~vi~~--~~------~~a~vi~~~~~~~~~~k~EtHNhPs~i~P~-~G--AaTg~gG~iRDi~~~Ga~p~a~~~~l~~ 132 (737)
T Consensus 41 ~~n~lvG~~~~rlGiGmDdA~v~~~~nG~~~v~T~D~-~~PiVddPY~~G~IAaaN~---~SDiYAMG~~~i~~~l~~~~ 116 (372)
T TIGR00476 41 DDNLLVGAVLRRLGIGMDDAAVYERHNGLSLVKTVDV-ITPIVDDPYLFGRIAAANA---LSDIYAMGGLPIVALLILVG 116 (372)
T ss_pred CCCCEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEE-EEEEECCHHHHHHHHHHHH---HHHHHHCCCCCHHHEEEEEC
T ss_conf 7210101000104323343113531798899996338-9832568355448998756---77777437732101433303
Q ss_pred CCCCCC--CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 875686--388899888745886654308721132035521567664221122112113554311225689779996576
Q gi|254780970|r 133 GAIHHP--KTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAK 210 (737)
Q Consensus 133 g~~~~p--~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~y~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii~~G~~ 210 (737)
T Consensus 117 ~~~kL~drer~~v~Rev~~G~~d~~reakt~~~GGhtil~----pwp~~Gg~vtgv~~~~~~~~~~~a~~G~~L~LT-KP 191 (372)
T TIGR00476 117 VSNKLSDRERIEVVREVIKGFKDACREAKTALVGGHTILN----PWPVFGGAVTGVCPEEEVITKSGAQVGDVLILT-KP 191 (372)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCEEECC----CCCCCCCEEEEECCCCCEECCCCCCCCCEEEEE-CC
T ss_conf 5666875444201068776588888768907973621127----620005406310278847525887424167851-75
Q ss_pred CCCCCCHHHHHHHHHHCCCCC---CCCCCCCCCCHHHHHHH-----------HHHH---HHHCCCCCCHHCCCCCCCCHH
Q ss_conf 564441046666777286533---34443326798999888-----------9998---740113830110347752011
Q gi|254780970|r 211 TGRDGIGGASMASEEFGENIA---KKRPTVQVGDPFTGKCL-----------LEAC---LELMNTDAVIAIQDMGAAGLT 273 (737)
Q Consensus 211 tg~dGi~Ga~~sS~~~~~~~~---~~~~~VQ~gdp~~ek~~-----------~~~~---~~~~~~~~i~~~~D~gaGGl~ 273 (737)
T Consensus 192 ---LGtqv~~~~~~~~~~~~~~nkik~~i~~ee~~~~~~~A~e~M~~~Nryalkal~~A~~~~~~~~~~A~TDvTGFGlL 268 (372)
T TIGR00476 192 ---LGTQVLVAVEKKLDIFKDLNKIKLSILKEERELIINEAIENMARLNRYALKALRKAAELMNSKDAKALTDVTGFGLL 268 (372)
T ss_pred ---CHHHHHHHHHHCCCCHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHH
T ss_conf ---16899998763112001104146786075278899899999998889999999998876644187153114565456
Q ss_pred HHHHHHHCCCCCCEEEEEHHHCCCCC----------------C------------CCHH-HHHHCCCC--CEEEEEEECC
Q ss_conf 12233201477528996202204667----------------8------------9998-98617888--5089999546
Q gi|254780970|r 274 CSAIEMGNQGNLGITLDLDKVPTCEE----------------G------------MTAY-EMMLSESQ--ERMLMILNPE 322 (737)
Q Consensus 274 ~a~~Ema~~~~~G~~i~l~~vp~~~~----------------~------------l~~~-ei~~sEsQ--eR~~~~v~~~ 322 (737)
T Consensus 269 GH~~~~ak~~~~~~~~~~e~lP~l~~~~~~~k~~~~~~G~~~g~~~~~~G~L~~~~~~~~~~ll~~~~~S~~y~~~~~~~ 348 (372)
T TIGR00476 269 GHAQEMAKNSNVEARIVYEKLPVLKKVEELSKLKGVPLGAIEGLETAGSGLLLSELPREKAALLCDPVKSGGYLFEVQKE 348 (372)
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHH
T ss_conf 88999874078669999530887354578898632433121354212674221357078986426101051357766688
Q ss_pred CHHHHHH-HHHHHCCEEECCCCE
Q ss_conf 7588999-888709713112212
Q gi|254780970|r 323 KQHKAQE-ILNKWGLHFSIIGIT 344 (737)
Q Consensus 323 ~~~~~~~-i~~~~~~~~~~iG~v 344 (737)
T Consensus 349 ~~~~v~~G~~~~~~v~~~~IgE~ 371 (372)
T TIGR00476 349 VKEKVEKGTAKEKEVELIEIGEV 371 (372)
T ss_pred HHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 85111010134330450254310