HHsearch alignment for GI: 254780970 and conserved domain: cd02197
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=100.00 E-value=4.5e-35 Score=259.42 Aligned_cols=271 Identities=24% Similarity=0.359 Sum_probs=200.1
Q ss_pred CHHHHHH-HHHCCCCEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCC--CCCCCCC---CCCCCCCCCCCCCEEEEE
Q ss_conf 8899975-120697489933477368983698399999517887776588--8872105---581022576778743687
Q gi|254780970|r 53 SKKWLRT-LPTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEP--YQGAATG---VGGILRDIFTMGARPVAA 126 (737)
Q Consensus 53 ~~~~l~~-~~~~~~~vi~~~~~~a~vi~~~~~~~~~~k~EtHNhPs~i~P--~~GAaTg---~gG~iRDi~~~Ga~p~a~ 126 (737)
T Consensus 6 ~~~~i~~~~~~~~~~~~lgigdDaAvi~~~~~~-lvvttD~~----v~~p~~f~~~diG~~Av~~~~sDIaamGa~P~~~ 80 (293)
T cd02197 6 MQELIEELFLKAFDNPILEVLEDAAALLVGGGR-LAFTTDSF----VVSPLFFPGGDIGKLAVCGTVNDLAMMGAKPLYL 80 (293)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCE-EEEEECCC----CCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCHHH
T ss_conf 999999998863698667888876986169984-99993654----2277528984473787521287898659975676
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC-CCCCCCCCEEEECCCCHHHHHHCCCCCCCCEEE
Q ss_conf 7504578756863888998887458866543087211320355215-676642211221121135543112256897799
Q gi|254780970|r 127 MNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPC-YNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLV 205 (737)
Q Consensus 127 ~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~-y~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii 205 (737)
T Consensus 81 l~sl~lp~-~~--~~~~l~~i~~Gi~~~~~~~gv~iVGGdT~v~~~~~~~~l~is~t~iG~v~~~~~~~~~gA~pGD~ii 157 (293)
T cd02197 81 SLGFILEE-GF--PLEDLERIVKSMAEAAREAGVKIVTGDTKVVPKGKADGIFINTTGIGVIPRGVIISPSNIRPGDKII 157 (293)
T ss_pred EEEEECCC-CC--CHHHHHHHHHHHHHHHHHHCCEEEECCEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf 37565589-99--9999999999999999971976861662751478778559986788985688550357899999999
Q ss_pred EECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 96576564441046666777286533344433267989998889998740113830110347752011122332014775
Q gi|254780970|r 206 YLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNL 285 (737)
Q Consensus 206 ~~G~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~ 285 (737)
T Consensus 158 vTg----~lG~~g~~il~~r~~~~~~~~~----~~d~~~~~~~~~~~l~~--~~~v~Am~DiT~gGL~~~L~eia~aSgv 227 (293)
T cd02197 158 VSG----TIGDHGAAILAAREGLGFETDI----ESDCAPLNGLVEALLEA--GPGIHAMRDPTRGGLAAVLNEIARASGV 227 (293)
T ss_pred EEC----CHHHHHHHHHHHHCCCCCCCHH----HHHHHHHHHHHHHHHHC--CCCCEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 968----6078899999852466644014----66666668999999970--7874474167975599999999998599
Q ss_pred CEEEEEHHHCCCCC--------CCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHH--CCEEECCCCE
Q ss_conf 28996202204667--------89998986178885089999546758899988870--9713112212
Q gi|254780970|r 286 GITLDLDKVPTCEE--------GMTAYEMMLSESQERMLMILNPEKQHKAQEILNKW--GLHFSIIGIT 344 (737)
Q Consensus 286 G~~i~l~~vp~~~~--------~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~--~~~~~~iG~v 344 (737)
T Consensus 228 g~~I~~~~iPv~~~v~~~~e~lg~DPl~~a---s~G~ll~~v~~e~a~~vl~~l~~~~~G~~A~iIGeV 293 (293)
T cd02197 228 GIEIEEEAIPVREEVRGACEMLGLDPLYLA---NEGKFVAIVPPEDAEEVLEALRSHPLGKEAAIIGEV 293 (293)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCHHHHH---CCCEEEEEECHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 399940368888899999998593987883---485399998789999999999728889981898669