HHsearch alignment for GI: 254780970 and conserved domain: cd02197

>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=100.00  E-value=4.5e-35  Score=259.42  Aligned_cols=271  Identities=24%  Similarity=0.359  Sum_probs=200.1

Q ss_pred             CHHHHHH-HHHCCCCEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCC--CCCCCCC---CCCCCCCCCCCCCEEEEE
Q ss_conf             8899975-120697489933477368983698399999517887776588--8872105---581022576778743687
Q gi|254780970|r   53 SKKWLRT-LPTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEP--YQGAATG---VGGILRDIFTMGARPVAA  126 (737)
Q Consensus        53 ~~~~l~~-~~~~~~~vi~~~~~~a~vi~~~~~~~~~~k~EtHNhPs~i~P--~~GAaTg---~gG~iRDi~~~Ga~p~a~  126 (737)
T Consensus         6 ~~~~i~~~~~~~~~~~~lgigdDaAvi~~~~~~-lvvttD~~----v~~p~~f~~~diG~~Av~~~~sDIaamGa~P~~~   80 (293)
T cd02197           6 MQELIEELFLKAFDNPILEVLEDAAALLVGGGR-LAFTTDSF----VVSPLFFPGGDIGKLAVCGTVNDLAMMGAKPLYL   80 (293)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCE-EEEEECCC----CCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCHHH
T ss_conf             999999998863698667888876986169984-99993654----2277528984473787521287898659975676


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC-CCCCCCCCEEEECCCCHHHHHHCCCCCCCCEEE
Q ss_conf             7504578756863888998887458866543087211320355215-676642211221121135543112256897799
Q gi|254780970|r  127 MNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPC-YNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLV  205 (737)
Q Consensus       127 ~~~l~~g~~~~p~~~~~~~~~~~G~~~ygN~~G~P~v~G~~~~~~~-y~~~~~v~~~~~Gi~~~~~~~~~~~~~~Gd~ii  205 (737)
T Consensus        81 l~sl~lp~-~~--~~~~l~~i~~Gi~~~~~~~gv~iVGGdT~v~~~~~~~~l~is~t~iG~v~~~~~~~~~gA~pGD~ii  157 (293)
T cd02197          81 SLGFILEE-GF--PLEDLERIVKSMAEAAREAGVKIVTGDTKVVPKGKADGIFINTTGIGVIPRGVIISPSNIRPGDKII  157 (293)
T ss_pred             EEEEECCC-CC--CHHHHHHHHHHHHHHHHHHCCEEEECCEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf             37565589-99--9999999999999999971976861662751478778559986788985688550357899999999


Q ss_pred             EECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf             96576564441046666777286533344433267989998889998740113830110347752011122332014775
Q gi|254780970|r  206 YLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNL  285 (737)
Q Consensus       206 ~~G~~tg~dGi~Ga~~sS~~~~~~~~~~~~~VQ~gdp~~ek~~~~~~~~~~~~~~i~~~~D~gaGGl~~a~~Ema~~~~~  285 (737)
T Consensus       158 vTg----~lG~~g~~il~~r~~~~~~~~~----~~d~~~~~~~~~~~l~~--~~~v~Am~DiT~gGL~~~L~eia~aSgv  227 (293)
T cd02197         158 VSG----TIGDHGAAILAAREGLGFETDI----ESDCAPLNGLVEALLEA--GPGIHAMRDPTRGGLAAVLNEIARASGV  227 (293)
T ss_pred             EEC----CHHHHHHHHHHHHCCCCCCCHH----HHHHHHHHHHHHHHHHC--CCCCEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             968----6078899999852466644014----66666668999999970--7874474167975599999999998599


Q ss_pred             CEEEEEHHHCCCCC--------CCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHH--CCEEECCCCE
Q ss_conf             28996202204667--------89998986178885089999546758899988870--9713112212
Q gi|254780970|r  286 GITLDLDKVPTCEE--------GMTAYEMMLSESQERMLMILNPEKQHKAQEILNKW--GLHFSIIGIT  344 (737)
Q Consensus       286 G~~i~l~~vp~~~~--------~l~~~ei~~sEsQeR~~~~v~~~~~~~~~~i~~~~--~~~~~~iG~v  344 (737)
T Consensus       228 g~~I~~~~iPv~~~v~~~~e~lg~DPl~~a---s~G~ll~~v~~e~a~~vl~~l~~~~~G~~A~iIGeV  293 (293)
T cd02197         228 GIEIEEEAIPVREEVRGACEMLGLDPLYLA---NEGKFVAIVPPEDAEEVLEALRSHPLGKEAAIIGEV  293 (293)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCCHHHHH---CCCEEEEEECHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             399940368888899999998593987883---485399998789999999999728889981898669