HHsearch alignment for GI: 254780970 and conserved domain: cd02197
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=99.98 E-value=1e-30 Score=229.61 Aligned_cols=257 Identities=23% Similarity=0.335 Sum_probs=180.9
Q ss_pred CCCCCCCCCCCCEEEECCCCCCEEEEECCC---CCCCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 110000135763142037776227973045---32100001001135678977764102785102232210245666862
Q gi|254780970|r 427 SNSIQLPGGDAGVIRVEGHETKALAFSSDV---TPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEE 503 (737)
Q Consensus 427 g~tv~~Pg~DaaVv~~~~~~~~gia~s~g~---~p~~~~~dP~~ga~~AV~Eal~Nl~a~Ga~Plait~~lnf~~P~~~e 503 (737)
T Consensus 19 ~~~~lgigdDaAvi~~~~--~~-lvvttD~~v~~p~~f--~~~diG~~Av~~~~sDIaamGa~P~~~l~sl~lp~~-~~~ 92 (293)
T cd02197 19 DNPILEVLEDAAALLVGG--GR-LAFTTDSFVVSPLFF--PGGDIGKLAVCGTVNDLAMMGAKPLYLSLGFILEEG-FPL 92 (293)
T ss_pred CCCCCCCCCCEEEECCCC--CE-EEEEECCCCCCCCCC--CCCCHHHHHHHCCHHHHHHCCCCCHHHEEEEECCCC-CCH
T ss_conf 986678888769861699--84-999936542277528--984473787521287898659975676375655899-999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCC
Q ss_conf 13469999999985221028866544320011236866676311122223335202331021438980751377665543
Q gi|254780970|r 504 IMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLD 583 (737)
Q Consensus 504 ~~~ql~~av~gl~d~c~~lgipivgGkvSl~n~t~~~~I~pTpvi~~vG~v~d~~~~it~~~k~~Gd~I~liG~~~~~Lg 583 (737)
T Consensus 93 --~~l~~i~~Gi~~~~~~~gv~iVGGdT~v~~~~~~~~--l~is~t~iG~v~~-~~~~~~~gA~pGD~iivTg~lG~~-g 166 (293)
T cd02197 93 --EDLERIVKSMAEAAREAGVKIVTGDTKVVPKGKADG--IFINTTGIGVIPR-GVIISPSNIRPGDKIIVSGTIGDH-G 166 (293)
T ss_pred --HHHHHHHHHHHHHHHHHCCEEEECCEEECCCCCCCC--EEEEEEEEEEECC-CCCCCCCCCCCCCEEEEECCHHHH-H
T ss_conf --999999999999999719768616627514787785--5998678898568-855035789999999996860788-9
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC-----
Q ss_conf 267888861167899964798999999999999999-59806994648657999999998458970899805666-----
Q gi|254780970|r 584 CSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMIN-AKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEI----- 657 (737)
Q Consensus 584 gS~~~~~~~~~~~g~~p~~d~~~~k~~~~~v~~li~-~g~I~S~HDiSdGGL~~aL~EMa~as~~G~~I~L~~~~----- 657 (737)
T Consensus 167 ~~il~~r-~~~~~~~~~~~d~~---~~~~~~~~~l~~~~~v~Am~DiT~gGL~~~L~eia~aSgvg~~I~~~~iPv~~~v 242 (293)
T cd02197 167 AAILAAR-EGLGFETDIESDCA---PLNGLVEALLEAGPGIHAMRDPTRGGLAAVLNEIARASGVGIEIEEEAIPVREEV 242 (293)
T ss_pred HHHHHHH-CCCCCCCHHHHHHH---HHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
T ss_conf 9999852-46664401466666---6689999999707874474167975599999999998599399940368888899
Q ss_pred -------CCCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHC--CCCEEEEEEE
Q ss_conf -------89878887298832189999688099899999857--9849998998
Q gi|254780970|r 658 -------EKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNK--NIPLRYLGKV 702 (737)
Q Consensus 658 -------~~d~~~~LFsEs~Gr~ii~V~~~~~~~~~~~~~~~--gi~~~~IG~V 702 (737)
T Consensus 243 ~~~~e~lg~DPl~~-a--s~G~ll~~v~~e~a~~vl~~l~~~~~G~~A~iIGeV 293 (293)
T cd02197 243 RGACEMLGLDPLYL-A--NEGKFVAIVPPEDAEEVLEALRSHPLGKEAAIIGEV 293 (293)
T ss_pred HHHHHHHCCCHHHH-H--CCCEEEEEECHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 99999859398788-3--485399998789999999999728889981898669