RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780970|ref|YP_003065383.1|
phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter
asiaticus str. psy62]
         (737 letters)



>gnl|CDD|30395 COG0046, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase,
           synthetase domain [Nucleotide transport and metabolism].
          Length = 743

 Score =  863 bits (2232), Expect = 0.0
 Identities = 334/726 (46%), Positives = 444/726 (61%), Gaps = 15/726 (2%)

Query: 13  AHGLTKDECDQIIHIL-KRQPTLTEIGIISAMWNEHCSYKSSKKWLRTLPTT--GKHVIQ 69
              L+ DE D I   L  R+PT TE+G+ + MW+EHCSYKSSK  L+  PTT  G++V+ 
Sbjct: 21  GLALSDDEYDYIREFLLGREPTDTELGMFAQMWSEHCSYKSSKSLLKMFPTTHTGEYVLS 80

Query: 70  GPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNS 129
           GPG+NAGVVDIG G  VVFK+ESHNHPS IEPYQGAATGVGGI+RD+ +MGARP+A ++S
Sbjct: 81  GPGDNAGVVDIGDGWAVVFKVESHNHPSAIEPYQGAATGVGGIIRDVLSMGARPIALLDS 140

Query: 130 LRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKT 189
           LRFG     KT++++ GVVAGIA Y N  GVPTVGGE  F   Y  N +VN    G+ + 
Sbjct: 141 LRFGIPDIEKTRYIMKGVVAGIAAYGNEIGVPTVGGEFRFDESYVGNPLVNAGCVGLIRK 200

Query: 190 NAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAK-KRPTVQVGDPFTGKCL 248
             I   +A G G  L+ LG KTGRDGIGGA+ AS E GE   +  RP+VQVGDPF  K L
Sbjct: 201 EHIVKGEAIGPGDKLILLGGKTGRDGIGGATFASMELGEESEEEDRPSVQVGDPFMEKRL 260

Query: 249 LEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMML 308
            EA LE + T  +  IQD+GA GL+C+  E+  +G LG  +DLDKVP  E GM+ YE+ L
Sbjct: 261 QEAILECVQTGLIKGIQDLGAGGLSCAISELAAKGGLGAEIDLDKVPLREPGMSPYEIWL 320

Query: 309 SESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANLPIKALS 368
           SESQERML+++ PE   +  EI  K  L  +++G  T++    V  +GE V +LPI  L+
Sbjct: 321 SESQERMLLVVAPEDVEEFLEICEKERLPAAVVGEVTDEPRLVVDWKGEPVVDLPIDVLA 380

Query: 369 DEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQYDTMIQSN 428
            +AP+YDR   EP     +       + D  ++LLK+LSSPN++S+ W+YEQYD  +  N
Sbjct: 381 GKAPKYDRPVKEPKK-EEAGDVPEPEEPDLEEALLKVLSSPNVASKEWLYEQYDRSVGGN 439

Query: 429 SIQLPG--GDAGVIRVE--GHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATG 484
           ++  PG   DA V+R+       K LA ++   PRY   DP+ G K AVAE  RN+ ATG
Sbjct: 440 TVVDPGPVADAAVLRISEDSGTGKGLAMTTGENPRYALLDPYAGAKLAVAEALRNLAATG 499

Query: 485 AKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFP 544
           AKPLA+TDNLNFGNPEK E+MGQFV +V G+ EAC+ L  P+V GNVS YNETNGQ I P
Sbjct: 500 AKPLALTDNLNFGNPEKPEVMGQFVAAVAGLAEACRALGIPVVGGNVSLYNETNGQPIPP 559

Query: 545 TPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDC 604
           TP I  VG++ D   +   +    G L+ ++G     L  S  +        GPPP VD 
Sbjct: 560 TPVIGAVGLVEDVRKVLTPELKKAGLLLYLLGETKDELGGSELAQVYHGLGDGPPPVVDL 619

Query: 605 HLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKPF 664
             EK     + ++I   K+ A HD+S GGL + LAEM  +   G++I L    +      
Sbjct: 620 AEEKKFFDAIRALIADGKVLAAHDVSDGGLAVALAEMAFAGGIGLEIDLDELGDDRLDAL 679

Query: 665 LFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGSTLSI----HNILNIPVATL 720
           LF E  GR +V ++ E  ++  +EA    +PL+ +G V G           ++ + V  L
Sbjct: 680 LFSESLGRVIVVVAEEEAEVEGAEA--VGVPLKVIGLVGGDHEIGAAVNEFLVPVSVEEL 737

Query: 721 QTKYES 726
           +  +E 
Sbjct: 738 REAWEG 743


>gnl|CDD|100034 cd02203, PurL_repeat1, PurL subunit of the formylglycinamide
           ribonucleotide amidotransferase (FGAR-AT), first repeat.
           FGAR-AT catalyzes the ATP-dependent conversion of
           formylglycinamide ribonucleotide (FGAR) and glutamine to
           formylglycinamidine ribonucleotide (FGAM), ADP,
           phosphate, and glutamate in the fourth step of the
           purine biosynthetic pathway. In eukaryotes and
           Gram-negative bacteria, FGAR-AT is encoded by the purL
           gene as a multidomain protein with a molecular mass of
           about 140 kDa. In Gram-positive bacteria and archaea
           FGAR-AT is a complex of three proteins: PurS, PurL, and
           PurQ. PurL itself contains two tandem N- and C-terminal
           domains (four domains altogether). The N-terminal
           domains bind ATP and are related to the ATP-binding
           domains of HypE, ThiL, SelD and PurM..
          Length = 313

 Score =  457 bits (1178), Expect = e-129
 Identities = 154/336 (45%), Positives = 204/336 (60%), Gaps = 32/336 (9%)

Query: 36  EIGIISAMWNEHCSYKSSKKWLRTLPTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNH 95
           E+G+ + MW+EHC +KS K  L+ +                         VVFK+E+HNH
Sbjct: 1   ELGMFAQMWSEHCRHKSFKSLLKMI-----------------------WAVVFKVETHNH 37

Query: 96  PSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHP--------KTKHLLSGV 147
           PS IEP+ GAATGVGGI+RDI +MGARP+A ++ LRFG +  P          + +L GV
Sbjct: 38  PSAIEPFGGAATGVGGIIRDILSMGARPIALLDGLRFGDLDIPGYEPKGKLSPRRILDGV 97

Query: 148 VAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYL 207
           VAGI+ Y N  G+PTVGGEV F P Y  N +VN    GI   + I  SKA G G  +V +
Sbjct: 98  VAGISDYGNCIGIPTVGGEVRFDPSYYGNPLVNVGCVGIVPKDHIVKSKAPGPGDLVVLV 157

Query: 208 GAKTGRDGIGGASMASEEFGEN-IAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQD 266
           G +TGRDGIGGA+ +S+E  EN     RP VQVGDPF  K L EA LE   T  ++ IQD
Sbjct: 158 GGRTGRDGIGGATFSSKELSENSSELDRPAVQVGDPFMEKKLQEAILEARETGLIVGIQD 217

Query: 267 MGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHK 326
           +GA GL+ +  EM  +G LG  +DLDKVP  E GM+ +E+ +SESQERML+++ PE   +
Sbjct: 218 LGAGGLSSAVSEMAAKGGLGAEIDLDKVPLREPGMSPWEIWISESQERMLLVVPPEDLEE 277

Query: 327 AQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANL 362
              I  K  L  ++IG  T+D   R+ ++GE VA+L
Sbjct: 278 FLAICKKEDLEAAVIGEVTDDGRLRLYYKGEVVADL 313



 Score = 70.2 bits (173), Expect = 2e-12
 Identities = 58/259 (22%), Positives = 101/259 (38%), Gaps = 47/259 (18%)

Query: 478 RNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGI-REACQ-ILDF------PIVSG 529
           R+I++ GA+P+A+ D L FG+ +      +   S + I       I D+      P V G
Sbjct: 56  RDILSMGARPIALLDGLRFGDLDIPGYEPKGKLSPRRILDGVVAGISDYGNCIGIPTVGG 115

Query: 530 NVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGN----DGCH---- 581
            V F     G    P   +  VGI+P    + +  +   GDL++++G     DG      
Sbjct: 116 EVRFDPSYYGN---PLVNVGCVGIVPK-DHIVKSKAPGPGDLVVLVGGRTGRDGIGGATF 171

Query: 582 ----LDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIIT 637
               L  +   L+  +  +G P      +EK     +L       I    D+  GGL   
Sbjct: 172 SSKELSENSSELDRPAVQVGDPF-----MEKKLQEAILEARETGLIVGIQDLGAGGLSSA 226

Query: 638 LAEMTISSAKGMDIIL-----------PIEIEKDPKPFLFGEDQGRYVVCISPENQDLVM 686
           ++EM      G +I L           P EI          E Q R ++ + PE+ +  +
Sbjct: 227 VSEMAAKGGLGAEIDLDKVPLREPGMSPWEI-------WISESQERMLLVVPPEDLEEFL 279

Query: 687 SEANNKNIPLRYLGKVSGS 705
           +    +++    +G+V+  
Sbjct: 280 AICKKEDLEAAVIGEVTDD 298


>gnl|CDD|100035 cd02204, PurL_repeat2, PurL subunit of the formylglycinamide
           ribonucleotide amidotransferase (FGAR-AT), second
           repeat. FGAR-AT catalyzes the ATP-dependent conversion
           of formylglycinamide ribonucleotide (FGAR) and glutamine
           to formylglycinamidine ribonucleotide (FGAM), ADP,
           phosphate, and glutamate in the fourth step of the
           purine biosynthetic pathway. In eukaryotes and
           Gram-negative bacteria, FGAR-AT is encoded by the purL
           gene as a multidomain protein with a molecular mass of
           about 140 kDa. In Gram-positive bacteria and archaea
           FGAR-AT is a complex of three proteins: PurS, PurL, and
           PurQ. PurL itself contains two tandem N- and C-terminal
           domains (four domains altogether). The N-terminal
           domains bind ATP and are related to the ATP-binding
           domains of HypE, ThiL, SelD and PurM..
          Length = 264

 Score =  301 bits (773), Expect = 6e-82
 Identities = 110/268 (41%), Positives = 147/268 (54%), Gaps = 5/268 (1%)

Query: 436 DAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLN 495
           DA V+R+ G   K LA S+   PRY   DP+ G   AVAE  RN++A GA PLAITD LN
Sbjct: 1   DAAVLRIPGETDKGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAVGADPLAITDCLN 60

Query: 496 FGNPEK-EEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGIL 554
           FGNPEK E  MGQ V +V G+ +AC+ L  P++ G  S YNET G +I PT  I  VG++
Sbjct: 61  FGNPEKPEGEMGQLVEAVLGLGDACRALGTPVIGGKDSLYNETEGVAIPPTLVIGAVGVV 120

Query: 555 PDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFV 614
            D   +  +D   EGDL+ +IG     L  S Y+L       G PP VD   EK     V
Sbjct: 121 DDVRKIVTLDFKKEGDLLYLIGETKDELGGSEYALAYHGLGGGAPPLVDLEREKALFDAV 180

Query: 615 LSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKPFLFGEDQGRYV 674
             +I    + + HD+S GGL + LAEM  +   G ++ L  +  +D    LF E  GR +
Sbjct: 181 QELIKEGLVLSAHDVSDGGLAVALAEMAFAGGLGAEVDLSKDDAED--ELLFSESLGRVL 238

Query: 675 VCISPENQDLVMSEANNKNIPLRYLGKV 702
           V + PEN+++   EA    +P   +G V
Sbjct: 239 VEVKPENEEVF--EAEEAGVPATVIGTV 264



 Score = 74.1 bits (183), Expect = 1e-13
 Identities = 70/280 (25%), Positives = 111/280 (39%), Gaps = 27/280 (9%)

Query: 75  AGVVDIGGGD--CVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRF 132
           A V+ I G     +      +   S ++PY GAA  V   +R++  +GA P+A  + L F
Sbjct: 2   AAVLRIPGETDKGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAVGADPLAITDCLNF 61

Query: 133 GAIHHPKTK-HLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN------TFAAG 185
           G    P+ +   L   V G+     + G P +GG+      YN    V         A G
Sbjct: 62  GNPEKPEGEMGQLVEAVLGLGDACRALGTPVIGGKDSL---YNETEGVAIPPTLVIGAVG 118

Query: 186 IAK-TNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFT 244
           +      I +   +  G  L  +G      G    ++A    G       P V   D   
Sbjct: 119 VVDDVRKIVTLDFKKEGDLLYLIGETKDELGGSEYALAYHGLGGGAP---PLV---DLER 172

Query: 245 GKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAY 304
            K L +A  EL+    V++  D+   GL  +  EM   G LG  +DL K           
Sbjct: 173 EKALFDAVQELIKEGLVLSAHDVSDGGLAVALAEMAFAGGLGAEVDLSKDD------AED 226

Query: 305 EMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGIT 344
           E++ SES  R+L+ + PE  ++      + G+  ++IG  
Sbjct: 227 ELLFSESLGRVLVEVKPE--NEEVFEAEEAGVPATVIGTV 264


>gnl|CDD|37118 KOG1907, KOG1907, KOG1907, Phosphoribosylformylglycinamidine synthase
            [Nucleotide transport and metabolism].
          Length = 1320

 Score =  177 bits (450), Expect = 1e-44
 Identities = 161/713 (22%), Positives = 282/713 (39%), Gaps = 84/713 (11%)

Query: 86   VVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG--ARPVAAMNSLRFGAIHHPKTKH- 142
            ++FK E+HNHP+ + P+ GA TG GG +RD    G  +  +A       G ++ P  K  
Sbjct: 306  LLFKAETHNHPTAVSPFPGATTGTGGRIRDEGATGRGSYEIAGTAGYSVGDLNIPGYKQP 365

Query: 143  -----------------LLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNT---- 181
                             ++     G + Y N FG P + G   +   +   +++      
Sbjct: 366  WEDLDFGYPYHIASPLDIMIEASNGASDYGNKFGEPVISG---YARTFGMRVLLENGERR 422

Query: 182  -------FAAGIAKTNAIFSSKAR-GIGLPLVYLGAKTGRDGIGGASMASEEFGENIAK- 232
                   F+ GI       + K     G  L+ +G    R G+GG + +S   GE  A+ 
Sbjct: 423  EYHKPIMFSGGIGTIRKQHARKEPIAPGQLLIKIGGPVYRIGVGGGAASSVVQGEGSAEL 482

Query: 233  KRPTVQVGDP-FTGKC--LLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITL 289
                VQ GD     K   ++ AC EL   + + +I D GA G      E+    +LG T 
Sbjct: 483  DFAAVQRGDAEMERKLQRVVRACAELGENNPIQSIHDQGAGGNGNVLKELVEDNDLGATF 542

Query: 290  DLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKL 349
            D       +  M+  E+  +E QE   +++  E     + I  +     S++G  T ++ 
Sbjct: 543  DSRTFQLGDPSMSPMEIWCAEYQENYALLVKAEDLDILESICKRERCPVSVVGEVTGEQR 602

Query: 350  FRVIHR--GEEVANLPIKALSDEAPEYDRAWCEPITIPPSN--PQLLCSDEDCTKSLLKL 405
              ++ +   E   +L ++ L  + P+  R     +   P       L S      +L ++
Sbjct: 603  VILLDKLAKETAIDLEMRQLLGKPPKMSR----KLKRAPRVLKKLELPSGLTLRDALERV 658

Query: 406  LSSPNLSSRRWVYEQYDTMIQS--------NSIQLPGGDAGVIRVEGHETKALAFSSDVT 457
            L  P+++S+R++  + D  +            +Q+P  D  V      +T   A +    
Sbjct: 659  LRLPSVASKRFLTTKVDRSVTGLIAQQQCVGPLQVPLADVAVTATSHFDTTGEAVAMGEQ 718

Query: 458  PRYVKADPFEGTKQAVAECWRNIIATGAKPLA-ITDNLNFGNPEKEEIMG-QFVHSVKGI 515
            P     D     +  VAE   N++A     L  +  + N+    K    G +   +V+ +
Sbjct: 719  PIKALIDAAASARMCVAEALMNLVAAKITSLKDVKLSGNWMWAAKHPGEGARLYDAVQAL 778

Query: 516  REACQILDFPIVSG--NVSFYNETNGQSIFP--TPTIAGVGILPDYSLMTRIDSAHEGD- 570
                  L   I  G  ++S   + +G+ +    T  I+     PD +     D     D 
Sbjct: 779  CLGLCELGIAIDGGKDSLSMAMKWDGEVVKAPGTLVISAYAPCPDVTKTVTPDLKANVDG 838

Query: 571  -----LILMIGNDGCHLDCSMYSLECASSNIGPP-PKVDCHLEKNHGFF--VLSMINAKK 622
                 L + + N    L  S  +L    S IG   P +D + ++   FF  V  ++N   
Sbjct: 839  SKTSLLWIDLANSKMRLGGS--ALAQVYSQIGDDCPDLD-NFDELKKFFSVVQQLLNEGI 895

Query: 623  ITACHDISTGGLIITLAEMTISSAKGMDI-ILPIEIEKDPKPFLFGEDQGRYVVCISPEN 681
            I A HDIS GGL++TL EM  +   G++I +            LF E+ G  V+ +S  +
Sbjct: 896  ILAGHDISDGGLLVTLLEMAFAGNVGIEIDLDSPNQNIKLFDILFAEELG-AVLEVSDTD 954

Query: 682  QDLVMSEANNKNIPLRYLGKVSG-----STLSIHN----ILNIPVATLQTKYE 725
             + V+   +   +   Y+GK S      + + I      ILN  ++ L+ ++E
Sbjct: 955  LEKVLEIFSEAGVKCEYIGKASAVFGQDAHIKISVNGHLILNEKLSDLREEWE 1007


>gnl|CDD|100029 cd02193, PurL, Formylglycinamide ribonucleotide amidotransferase
           (FGAR-AT) catalyzes the ATP-dependent conversion of
           formylglycinamide ribonucleotide (FGAR) and glutamine to
           formylglycinamidine ribonucleotide (FGAM), ADP,
           phosphate, and glutamate in the fourth step of the
           purine biosynthetic pathway. In eukaryotes and
           Gram-negative bacteria, FGAR-AT is encoded by the purL
           gene as a multidomain protein with a molecular mass of
           about 140 kDa. In Gram-positive bacteria and archaea
           FGAR-AT is a complex of three proteins: PurS, PurL, and
           PurQ. PurL itself contains two tandem N- and C-terminal
           domains (four domains altogether).  The N-terminal
           domains bind ATP and are related to the ATP-binding
           domains of HypE, ThiL, SelD and PurM..
          Length = 272

 Score =  166 bits (422), Expect = 2e-41
 Identities = 76/270 (28%), Positives = 115/270 (42%), Gaps = 15/270 (5%)

Query: 86  VVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG--ARPVAAMNSLRFGAIHHPKTKHL 143
              K+E HNHP+ I+P  GAATGVGG +RDI   G  A+P+A   +    A H P    +
Sbjct: 3   EAMKIEEHNHPAAIDPAAGAATGVGGAIRDIAATGIDAKPIALSANWMASAGH-PGEDAI 61

Query: 144 LSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNN-----------NIIVNTFAAGIAKTNAI 192
           L   V G+A   N  G+P   G+                       +   A G  + +  
Sbjct: 62  LYDAVKGVAELCNQLGLPIPVGKDRMSMKTRWQEGNEQREMTHPPSLVISAFGRVRDDRH 121

Query: 193 FSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEAC 252
              +    G  L+ +G   G +G+GG ++AS          +   QV DP   K   EA 
Sbjct: 122 TLPQLSTEGNALLLIGGGKGHNGLGGTALASVALSYRQLGDKS-AQVRDPAQEKGFYEAM 180

Query: 253 LELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQ 312
             L+    ++A  D GA GL  +  E+   G+ G+ +DL  +   E  M   E+ L ESQ
Sbjct: 181 QALVAAGKLLAWHDRGAGGLLVALAELVFAGHCGVQVDLAALGDDEPDMEPLEIALFESQ 240

Query: 313 ERMLMILNPEKQHKAQEILNKWGLHFSIIG 342
           ER ++ +  E +   +E          ++G
Sbjct: 241 ERGVIQVRAEDRDAVEEAQYGLADCVHVLG 270



 Score = 71.9 bits (176), Expect = 5e-13
 Identities = 66/263 (25%), Positives = 105/263 (39%), Gaps = 31/263 (11%)

Query: 464 DPFEGTKQAVAECWRNIIATG--AKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQI 521
           DP  G    V    R+I ATG  AKP+A++ N         E    +  +VKG+ E C  
Sbjct: 17  DPAAGAATGVGGAIRDIAATGIDAKPIALSANWMASAGHPGEDAILY-DAVKGVAELCNQ 75

Query: 522 LDFPIVSGNVSFYNETNGQSIF--------PTPTIAGVGILPDYSLMTRIDSAHEGDLIL 573
           L  PI  G      +T  Q           P+  I+  G + D    T    + EG+ +L
Sbjct: 76  LGLPIPVGKDRMSMKTRWQEGNEQREMTHPPSLVISAFGRVRDDRH-TLPQLSTEGNALL 134

Query: 574 MI----GNDGCH------LDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKI 623
           +I    G++G        +  S   L   S+ +  P       EK     + +++ A K+
Sbjct: 135 LIGGGKGHNGLGGTALASVALSYRQLGDKSAQVRDP-----AQEKGFYEAMQALVAAGKL 189

Query: 624 TACHDISTGGLIITLAEMTISSAKG----MDIILPIEIEKDPKPFLFGEDQGRYVVCISP 679
            A HD   GGL++ LAE+  +   G    +  +   E + +P      E Q R V+ +  
Sbjct: 190 LAWHDRGAGGLLVALAELVFAGHCGVQVDLAALGDDEPDMEPLEIALFESQERGVIQVRA 249

Query: 680 ENQDLVMSEANNKNIPLRYLGKV 702
           E++D V          +  LG+ 
Sbjct: 250 EDRDAVEEAQYGLADCVHVLGQA 272


>gnl|CDD|145754 pfam02769, AIRS_C, AIR synthase related protein, C-terminal domain.
            This family includes Hydrogen expression/formation
           protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase
           EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The
           function of the C-terminal domain of AIR synthase is
           unclear, but the cleft formed between N and C domains is
           postulated as a sulphate binding site.
          Length = 150

 Score =  114 bits (288), Expect = 8e-26
 Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 9/155 (5%)

Query: 201 GLPLVYLGAKTGRDGIGGAS-MASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTD 259
           G  L+ LG+     G+GG+      +  E        V +GDP     L+   L L    
Sbjct: 3   GDVLILLGS----SGLGGSGLSLVRKGLEE----DGAVPLGDPLLEPTLIYVVLLLAALG 54

Query: 260 AVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMIL 319
            V A  D+   GL  +  EM     +G  +DLDKVP  +E +   EM+ SE+Q R L+++
Sbjct: 55  LVKAAHDITGGGLAGALAEMAPASGVGAEIDLDKVPIFDELLLPLEMLFSENQGRGLVVV 114

Query: 320 NPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIH 354
            PE+      IL + GL  ++IG  T      ++ 
Sbjct: 115 VPEEAEAVLAILEEEGLPAAVIGEVTAGGGLELVV 149



 Score = 88.6 bits (220), Expect = 5e-18
 Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 7/140 (5%)

Query: 568 EGDLILMIGNDGCHLDCSMYSL-ECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITAC 626
            GD+++++G+ G     S  SL        G  P  D  LE    + VL +     + A 
Sbjct: 2   PGDVLILLGSSGLG--GSGLSLVRKGLEEDGAVPLGDPLLEPTLIYVVLLLAALGLVKAA 59

Query: 627 HDISTGGLIITLAEMTISSAKGMDIILP----IEIEKDPKPFLFGEDQGRYVVCISPENQ 682
           HDI+ GGL   LAEM  +S  G +I L      +    P   LF E+QGR +V + PE  
Sbjct: 60  HDITGGGLAGALAEMAPASGVGAEIDLDKVPIFDELLLPLEMLFSENQGRGLVVVVPEEA 119

Query: 683 DLVMSEANNKNIPLRYLGKV 702
           + V++    + +P   +G+V
Sbjct: 120 EAVLAILEEEGLPAAVIGEV 139


>gnl|CDD|100027 cd00396, PurM-like, AIR (aminoimidazole ribonucleotide) synthase
           related protein. This family includes Hydrogen
           expression/formation protein HypE, AIR synthases, FGAM
           (formylglycinamidine ribonucleotide) synthase and
           Selenophosphate synthetase (SelD). The N-terminal domain
           of AIR synthase forms the dimer interface of the
           protein, and is suggested as a putative ATP binding
           domain..
          Length = 222

 Score =  109 bits (275), Expect = 2e-24
 Identities = 63/264 (23%), Positives = 98/264 (37%), Gaps = 49/264 (18%)

Query: 86  VVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLS 145
           +    +  N P  I P+ G    VGG + DI  MGARP+A + SL             L 
Sbjct: 2   LAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAMGARPIALLASLSLSNGLEVDI---LE 58

Query: 146 GVVAGIAGYSNSFGVPTVGGEVEFLPCYN-NNIIVNTFAAGIAKTNAIFSSKARGIGLPL 204
            VV G+A   N  GVP VGG     P    + + +  FA G+ + + +  S     G  L
Sbjct: 59  DVVDGVAEACNQLGVPIVGGHTSVSPGTMGHKLSLAVFAIGVVEKDRVIDSSGARPGDVL 118

Query: 205 VYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAI 264
           +  G                                        ++A LEL+    V A+
Sbjct: 119 ILTG----------------------------------------VDAVLELVAAGDVHAM 138

Query: 265 QDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAY-----EMMLSESQERMLMIL 319
            D+   GL  +  E+     +G  +DL+ +P  E           E +L  S   +L+ +
Sbjct: 139 HDITDGGLLGTLPELAQASGVGAEIDLEAIPLDEVVRWLCVEHIEEALLFNSSGGLLIAV 198

Query: 320 NPEKQHKAQEILNKWGLHFSIIGI 343
             E+      +LN  G+  ++IG 
Sbjct: 199 PAEEADAVLLLLNGNGIDAAVIGR 222



 Score = 86.7 bits (215), Expect = 2e-17
 Identities = 62/266 (23%), Positives = 105/266 (39%), Gaps = 57/266 (21%)

Query: 449 ALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQF 508
           +LA S+D     +  +P+ G + AV     +I A GA+P+A+  +L+  N  + +I+   
Sbjct: 1   SLAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAMGARPIALLASLSLSNGLEVDILEDV 60

Query: 509 VHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHE 568
              V G+ EAC  L  PIV G+ S    T G     +  +  +G++     +     A  
Sbjct: 61  ---VDGVAEACNQLGVPIVGGHTSVSPGTMG--HKLSLAVFAIGVVEK-DRVIDSSGARP 114

Query: 569 GDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHD 628
           GD++++ G D                                   VL ++ A  + A HD
Sbjct: 115 GDVLILTGVD----------------------------------AVLELVAAGDVHAMHD 140

Query: 629 ISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKP-------------FLFGEDQGRYVV 675
           I+ GGL+ TL E+  + A G+     I++E  P                L     G  ++
Sbjct: 141 ITDGGLLGTLPEL--AQASGVGAE--IDLEAIPLDEVVRWLCVEHIEEALLFNSSGGLLI 196

Query: 676 CISPENQDLVMSEANNKNIPLRYLGK 701
            +  E  D V+   N   I    +G+
Sbjct: 197 AVPAEEADAVLLLLNGNGIDAAVIGR 222


>gnl|CDD|144251 pfam00586, AIRS, AIR synthase related protein, N-terminal domain.
           This family includes Hydrogen expression/formation
           protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase
           EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The
           N-terminal domain of AIR synthase forms the dimer
           interface of the protein, and is suggested as a putative
           ATP binding domain.
          Length = 95

 Score =  102 bits (257), Expect = 3e-22
 Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 7/99 (7%)

Query: 72  GENAGVVDIGGGDCVVF---KMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMN 128
           G++A V+ +G G  +V     + +H H +  +PY G AT V G L D+  MGA+P+A ++
Sbjct: 1   GDDAAVIRLGEGPALVVTTDGVVTHVHFAA-DPYDGGATAVAGNLSDLAAMGAKPLAFLD 59

Query: 129 SLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEV 167
            L  G    P+    L  +V GIA  +N FGVP VGG+ 
Sbjct: 60  GLALGEGLDPEW---LEEIVRGIAEAANEFGVPLVGGDT 95



 Score = 93.7 bits (234), Expect = 2e-19
 Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 434 GGDAGVIRVEGHETKALAFSSDVTPRYVK--ADPFEGTKQAVAECWRNIIATGAKPLAIT 491
           G DA VIR+      AL  ++D    +V   ADP++G   AVA    ++ A GAKPLA  
Sbjct: 1   GDDAAVIRLGEG--PALVVTTDGVVTHVHFAADPYDGGATAVAGNLSDLAAMGAKPLAFL 58

Query: 492 DNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNV 531
           D L  G     E + +    V+GI EA      P+V G+ 
Sbjct: 59  DGLALGEGLDPEWLEEI---VRGIAEAANEFGVPLVGGDT 95


>gnl|CDD|32327 COG2144, COG2144, Selenophosphate synthetase-related proteins
           [General function prediction only].
          Length = 324

 Score = 75.3 bits (185), Expect = 6e-14
 Identities = 63/299 (21%), Positives = 121/299 (40%), Gaps = 40/299 (13%)

Query: 414 RRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSD-VTPRYVKADPFE-GTKQ 471
           +  V E  D    +  I   G DA VIRV       L  ++D +  + + ADP+  G   
Sbjct: 23  KDAVREFLDEFYGAEVILDFGDDAAVIRVGD---GKLLIAADGIWGKLIDADPWWAGYCS 79

Query: 472 AVAECWRNIIATGAKPLAITDNLNFGNPEK-EEIMGQFVHSVKGIREACQILDFPIVSGN 530
            +     ++ A G +P+   D ++  + ++  EI+       +G+R+  +    PIV G 
Sbjct: 80  VLVNV-NDVAAMGGEPVGAVDAISAKSEDQAREIL-------EGLRKGARKFGVPIVGG- 130

Query: 531 VSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLE 590
                 T+  + +    +   G++ +  +     +A  GDL++ +G+       + + L 
Sbjct: 131 -----HTHPDTPYCVLDVVIGGLIAEEPI-ITSGTAKPGDLLIFVGDLDGKPYPN-FPLN 183

Query: 591 CASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMD 650
             ++ +    K    LE       L    AK + A  D+S GGL+ TL  +   S  G  
Sbjct: 184 WDTTTMKAKEKFRAQLE-------LLREGAKLVKAGKDVSNGGLLGTLLMLLEKSRVGAG 236

Query: 651 IILPIEIEKDPKPFLFGEDQ-------GRYVVCISPENQDLVMSEANNKNIPLRYLGKV 702
               ++++  P P      Q         +V+ + PE+ + V+     +  P   +G+V
Sbjct: 237 ----VDLDSIPYPADVDFRQWLKRYPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGEV 291



 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 55/307 (17%), Positives = 112/307 (36%), Gaps = 28/307 (9%)

Query: 61  PTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG 120
              G  VI   G++A V+ +G G  ++            +P+      V   + D+  MG
Sbjct: 32  EFYGAEVILDFGDDAAVIRVGDGKLLIAADGIWGKLIDADPWWAGYCSVLVNVNDVAAMG 91

Query: 121 ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN 180
             PV A++++        K++     ++ G+   +  FGVP VGG       Y    +++
Sbjct: 92  GEPVGAVDAIS------AKSEDQAREILEGLRKGARKFGVPIVGGHTHPDTPYC---VLD 142

Query: 181 TFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG 240
               G+     I +S     G  L+++G   G+                     P     
Sbjct: 143 VVIGGLIAEEPIITSGTAKPGDLLIFVGDLDGK----------------PYPNFPLNWDT 186

Query: 241 DPFTGKCLLEACLELMN--TDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCE 298
                K    A LEL+      V A +D+   GL  + + +  +  +G  +DLD +P   
Sbjct: 187 TTMKAKEKFRAQLELLREGAKLVKAGKDVSNGGLLGTLLMLLEKSRVGAGVDLDSIP-YP 245

Query: 299 EGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEE 358
             +   + +        ++ ++PE   +  ++  + G   ++IG    + + R+      
Sbjct: 246 ADVDFRQWLKRYPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGEVIEEPVLRIGDGELV 305

Query: 359 VANLPIK 365
                ++
Sbjct: 306 SEVFDLE 312


>gnl|CDD|30657 COG0309, HypE, Hydrogenase maturation factor [Posttranslational
           modification, protein turnover, chaperones].
          Length = 339

 Score = 67.9 bits (166), Expect = 1e-11
 Identities = 70/298 (23%), Positives = 118/298 (39%), Gaps = 34/298 (11%)

Query: 72  GENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVG-----GILRDIFTMGARPVAA 126
           GE+A ++D+G G  + F  +       I+P       +G     G   D+   GA+P   
Sbjct: 38  GEDAAIIDLGDGV-LAFTTDPF----VIDPLFFPGGDIGKLAVHGTANDVAVSGAKPRYL 92

Query: 127 MNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGI 186
              L    +        L  ++  I   +   GV  V G+ + +P   + I++NT   GI
Sbjct: 93  SVGL---ILPEGLPIEDLERILKSIDEEAEEAGVSIVTGDTKVVPGGKDPIVINTTGIGI 149

Query: 187 AKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAK--KRPTVQVGDPFT 244
                + S      G  ++     TG  GI GAS+ +  FGE +          +     
Sbjct: 150 IDKEILVSPSGARPGDAVIV----TGTIGIHGASILAHRFGEELETELGSDCAPLAKLV- 204

Query: 245 GKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEE----- 299
            K LL    E     AV A+ D    GL  +  EM     +GI+++ +K+P  EE     
Sbjct: 205 -KALLSVVGE-ALAAAVTAMHDATRGGLAGALNEMAEASGVGISIEEEKIPVREEVRGVC 262

Query: 300 ---GMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGL-HFSIIGITTNDKLFRVI 353
              G+   E+    ++ ++++ + PE   +  E L   GL   +IIG    +K    +
Sbjct: 263 ELLGLDPLELA---NEGKLVIAVPPEHAEEVLEALRSHGLKDAAIIGEVVEEKGGVGL 317



 Score = 54.9 bits (132), Expect = 9e-08
 Identities = 67/275 (24%), Positives = 104/275 (37%), Gaps = 41/275 (14%)

Query: 434 GGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGT---KQAVAECWRNIIATGAKPLAI 490
           G DA +I +       LAF++D  P  +    F G    K AV     ++  +GAKP  +
Sbjct: 38  GEDAAIIDLGDGV---LAFTTD--PFVIDPLFFPGGDIGKLAVHGTANDVAVSGAKPRYL 92

Query: 491 TDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAG 550
           +  L    PE    +      +K I E  +     IV+G+           +  T    G
Sbjct: 93  SVGLIL--PEGLP-IEDLERILKSIDEEAEEAGVSIVTGDTKVVPGGKDPIVINT---TG 146

Query: 551 VGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNH 610
           +GI+    L      A  GD +++ G  G H    +         +      DC      
Sbjct: 147 IGIIDKEIL-VSPSGARPGDAVIVTGTIGIHGASILAHRF--GEELETELGSDCAPLAKL 203

Query: 611 GFFVLSM---INAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKPF--- 664
              +LS+     A  +TA HD + GGL   L EM  +S  G      I IE++  P    
Sbjct: 204 VKALLSVVGEALAAAVTAMHDATRGGLAGALNEMAEASGVG------ISIEEEKIPVREE 257

Query: 665 ------LFGED------QGRYVVCISPENQDLVMS 687
                 L G D      +G+ V+ + PE+ + V+ 
Sbjct: 258 VRGVCELLGLDPLELANEGKLVIAVPPEHAEEVLE 292


>gnl|CDD|100030 cd02194, ThiL, ThiL (Thiamine-monophosphate kinase) plays a dual
           role in de novo biosynthesis and in salvage of exogenous
           thiamine. Thiamine salvage occurs in two steps, with
           thiamine kinase catalyzing the formation of thiamine
           phosphate, and ThiL catalyzing the conversion of this
           intermediate to thiamine pyrophosphate. The N-terminal
           domain of ThiL binds ATP and is related to the
           ATP-binding domains of hydrogen expression/formation
           protein HypE, the AIR synthases, FGAM synthase and
           selenophosphate synthetase (SelD)..
          Length = 291

 Score = 61.0 bits (149), Expect = 1e-09
 Identities = 70/300 (23%), Positives = 110/300 (36%), Gaps = 62/300 (20%)

Query: 433 PGGDAGVIRVEGHE----TKALA----FSSDVTPRYVKADPFEGTKQAVAECWRN---II 481
            G DA V++  G      T  L     F  D TP  +      G K A+A    N   + 
Sbjct: 23  IGDDAAVLKPPGGRLVVTTDTLVEGVHFPPDTTPEDI------GWK-ALA---VNLSDLA 72

Query: 482 ATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQS 541
           A GA+PL    +L       EE + +F    +G+ EA      P+V G+       +   
Sbjct: 73  AMGARPLGFLLSLGLPPDTDEEWLEEFY---RGLAEAADRYGVPLVGGDT---TSGSELV 126

Query: 542 IFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPK 601
           I    ++  +G +     + R   A  GDL+ + G  G   D +   L      +  P +
Sbjct: 127 I----SVTALGEVEKGKPLRR-SGAKPGDLLYVTGTLG---D-AAAGLALLLGGLKLPEE 177

Query: 602 VDCHLEKNHGFF-----VLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDII---L 653
           +   L + H        +   +     TA  DIS  GL+  L  +  +S  G  I    L
Sbjct: 178 LYEELIERHLRPEPRLELGRALAEGLATAMIDISD-GLLADLGHIAEASGVGAVIDLDKL 236

Query: 654 PIEIE-------KDPKPFLF--GEDQGRY--VVCISPENQDLVMSEANNKNIPLRYLGKV 702
           P+          +D        GED   Y  +  + PEN     + A    +P+  +G+V
Sbjct: 237 PLSPALRAAELGEDALELALSGGED---YELLFTVPPEN---AEAAAAKLGVPVTVIGRV 290



 Score = 41.4 bits (98), Expect = 0.001
 Identities = 80/315 (25%), Positives = 121/315 (38%), Gaps = 60/315 (19%)

Query: 55  KWLRTLPTTGKHVIQGPGENAGVVDIGGGDCVV----FKMESHNHPSYIEPYQGAATGVG 110
             L      G  V+ G G++A V+   GG  VV         H  P    P       + 
Sbjct: 7   DRLFKRLGAGPGVLLGIGDDAAVLKPPGGRLVVTTDTLVEGVHFPPDT-TPEDIGWKALA 65

Query: 111 GILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFL 170
             L D+  MGARP+  + SL    +     +  L     G+A  ++ +GVP VGG+    
Sbjct: 66  VNLSDLAAMGARPLGFLLSL---GLPPDTDEEWLEEFYRGLAEAADRYGVPLVGGDT--- 119

Query: 171 PCYNNNIIVNTFAAGIA-KTNAIFSSKARGIGLP--LVYLGAKTGRDGIGGASMA----- 222
               + ++++  A G   K   +  S A+    P  L+Y+   TG   +G A+       
Sbjct: 120 -TSGSELVISVTALGEVEKGKPLRRSGAK----PGDLLYV---TGT--LGDAAAGLALLL 169

Query: 223 ------SEEFGENIAK-KRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCS 275
                  E + E I +  RP  ++     G+ L E     M  D    I D    GL   
Sbjct: 170 GGLKLPEELYEELIERHLRPEPRLE---LGRALAEGLATAM-ID----ISD----GLLAD 217

Query: 276 AIEMGNQGNLGITLDLDKVP------TCEEGMTAYEMMLS--ESQERMLMILNPEKQHKA 327
              +     +G  +DLDK+P        E G  A E+ LS  E  E +L  + PE    A
Sbjct: 218 LGHIAEASGVGAVIDLDKLPLSPALRAAELGEDALELALSGGEDYE-LLFTVPPENAEAA 276

Query: 328 QEILNKWGLHFSIIG 342
              L   G+  ++IG
Sbjct: 277 AAKL---GVPVTVIG 288


>gnl|CDD|100037 cd06061, PurM-like1, AIR synthase (PurM) related protein, subgroup
           1 of unknown function. The family of PurM related
           proteins includes Hydrogen expression/formation protein
           HypE, AIR synthases, FGAM synthase and Selenophosphate
           synthetase (SelD). They all contain two conserved
           domains and seem to dimerize. The N-terminal domain
           forms the dimer interface and is a putative ATP binding
           domain..
          Length = 298

 Score = 59.5 bits (145), Expect = 4e-09
 Identities = 76/308 (24%), Positives = 123/308 (39%), Gaps = 48/308 (15%)

Query: 57  LRTLPTTGKHVIQGP--GENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILR 114
           L+ L      V+ GP  GE+A VVD GG   VV        P            V     
Sbjct: 15  LKNLGADRDEVLVGPGGGEDAAVVDFGGKVLVV-----STDPITGAGKDAGWLAVHIAAN 69

Query: 115 DIFTMGARPVAAMNSLRFGAIHHPKTKH-LLSGVVAGIAGYSNSFGVPTVGGEVEFLPCY 173
           DI T GARP   + +L       P T    L  ++  I   +   GV  VGG  E  P  
Sbjct: 70  DIATSGARPRWLLVTLLL----PPGTDEEELKAIMREINEAAKELGVSIVGGHTEVTPGV 125

Query: 174 NNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKK 233
              II  T A G  + + + +      G  +V     T   GI G ++ + +F E + K+
Sbjct: 126 TRPIISVT-AIGKGEKDKLVTPSGAKPGDDIVM----TKGAGIEGTAILANDFEEELKKR 180

Query: 234 RPTVQVGDPFTGKCLLEAC--LELMNT--DAVIAIQD----MGAA---GLTCSAIEMGNQ 282
                     + + L EA      ++   +A+IA +     M  A   G+  +  E+   
Sbjct: 181 ---------LSEEELREAAKLFYKISVVKEALIAAEAGVTAMHDATEGGILGALWEVAEA 231

Query: 283 GNLGITLDLDKVPTCEE--------GMTAYEMMLSESQERMLMILNPEKQHKAQEILNKW 334
             +G+ ++ DK+P  +E        G+    ++ S +   +L+ + PEK  +  + L + 
Sbjct: 232 SGVGLRIEKDKIPIRQETKEICEALGIDPLRLISSGT---LLITVPPEKGDELVDALEEA 288

Query: 335 GLHFSIIG 342
           G+  S+IG
Sbjct: 289 GIPASVIG 296



 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 54/232 (23%), Positives = 85/232 (36%), Gaps = 39/232 (16%)

Query: 434 GGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDN 493
           G DA V+   G   K L  S+D     +     +    AV     +I  +GA+P  +   
Sbjct: 32  GEDAAVVDFGG---KVLVVSTDP----ITGAGKDAGWLAVHIAANDIATSGARPRWLLVT 84

Query: 494 LNF--GNPEKE--EIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIA 549
           L    G  E+E   IM +       I EA + L   IV G+             P  ++ 
Sbjct: 85  LLLPPGTDEEELKAIMRE-------INEAAKELGVSIVGGHTEVTPGVT----RPIISVT 133

Query: 550 GVGILPDYSLMTRIDSAHEGDLILM---IGNDGCHLDCSMYSLECASSNIGPPPKVDCHL 606
            +G      L      A  GD I+M    G +G  +  + +  E     +         L
Sbjct: 134 AIGKGEKDKL-VTPSGAKPGDDIVMTKGAGIEGTAILANDFEEEL-KKRLSEE-----EL 186

Query: 607 EKNHGFFV-LSMINAKKI------TACHDISTGGLIITLAEMTISSAKGMDI 651
            +    F  +S++    I      TA HD + GG++  L E+  +S  G+ I
Sbjct: 187 REAAKLFYKISVVKEALIAAEAGVTAMHDATEGGILGALWEVAEASGVGLRI 238


>gnl|CDD|30956 COG0611, ThiL, Thiamine monophosphate kinase [Coenzyme metabolism].
          Length = 317

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 73/315 (23%), Positives = 122/315 (38%), Gaps = 47/315 (14%)

Query: 65  KHVIQGPGENAGVVDIGGGDCVVFK----MESHNHPSYIEPYQGAATGVGGILRDIFTMG 120
           + V+ G G++A +VD   G  +V      +E  + P  + P       +   L D+  MG
Sbjct: 19  EDVVLGIGDDAALVDAPEGQRLVVTTDMLVEGTHFPPDMTPEDLGWKALAVNLSDLAAMG 78

Query: 121 ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN 180
           ARP A + SL    +     +  L  +  GI   +  +GV  +GG+          + ++
Sbjct: 79  ARPKAFLLSL---GLPPDLDEEWLEALADGIFEAAKKYGVKLIGGDTNR-----GPLSIS 130

Query: 181 TFAAGIAKTN-AIFSSKARGIGLPLVYLGAKTGRDGIGGASMA-------SEEFGENIAK 232
             A G+     A+  S A+  G  +      TG  G   A +         E+  E I +
Sbjct: 131 VTAIGVLPKGRALLRSGAK-PGDLVAV----TGTLGRSAAGLELLLNVLGPEDEEELIER 185

Query: 233 -KRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDL 291
             RPT +V           A  +L +  A + I D    GL      +     +GI +D 
Sbjct: 186 HLRPTPRVELGL-------ALAKLAS--AAMDISD----GLAADLGHIARASGVGIVIDE 232

Query: 292 DKVP-------TCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGIT 344
           D +P         +E     E  LS  ++  L+   PE+  +A     +  L  +IIG  
Sbjct: 233 DLLPLSDAVLEALDELGDPLEWALSGGEDYELVFTVPEENREALLDALR-SLGVTIIGRV 291

Query: 345 TNDKLFRVIHRGEEV 359
           T  +   V+  G+E+
Sbjct: 292 TEGEGVVVLVDGKEL 306


>gnl|CDD|100028 cd02192, PurM-like3, AIR synthase (PurM) related protein, subgroup
           3 of unknown function. The family of PurM related
           proteins includes Hydrogen expression/formation protein
           HypE, AIR synthases, FGAM synthase and Selenophosphate
           synthetase (SelD). They all contain two conserved
           domains and seem to dimerize. The N-terminal domain
           forms the dimer interface and is a putative ATP binding
           domain..
          Length = 283

 Score = 52.6 bits (127), Expect = 4e-07
 Identities = 52/236 (22%), Positives = 97/236 (41%), Gaps = 36/236 (15%)

Query: 433 PGGDAGVIRVEGHETKALAFSSD-VTPRYVKADP-FEGTKQAVAECWRNIIATGAKPLAI 490
            G DA  I         L  ++D + P  V+ADP + G    +     +I A G +PLA+
Sbjct: 34  LGDDAAAIPDGD---GYLLLAADGIWPSLVEADPWWAGYCSVLVNV-SDIAAMGGRPLAM 89

Query: 491 TDNLNFGNPEK-EEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIA 549
            D L   + E   +++       +G+R+A +    PIV G+      T+  S +   ++A
Sbjct: 90  VDALWSPSAEAAAQVL-------EGMRDAAEKFGVPIVGGH------THPDSPYNALSVA 136

Query: 550 GVGILPDYSLMTRIDSAHEGDLILMIGN-DGCHLDCSMYSLECASSNIGPPPKVDCHLEK 608
            +G       +     A  GD +++  + DG        + +  +     P  +   +  
Sbjct: 137 ILGRAR--KDLLISFGAKPGDRLILAIDLDGRVHPSPPPNWDATTMK--SPALLRRQIA- 191

Query: 609 NHGFFVLSMINAKK-ITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKP 663
                +L  +  +  + A  DIS  G+I TL  +  +S  G +    I+++  P+P
Sbjct: 192 -----LLPELAERGLVHAAKDISNPGIIGTLGMLLEASGVGAE----IDLDAIPRP 238



 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 54/237 (22%), Positives = 88/237 (37%), Gaps = 38/237 (16%)

Query: 67  VIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIE--PYQGAATGVGGILRDIFTMGARPV 124
           V    G++A  +  G G  ++   +    PS +E  P+      V   + DI  MG RP+
Sbjct: 30  VAADLGDDAAAIPDGDGY-LLLAADGI-WPSLVEADPWWAGYCSVLVNVSDIAAMGGRPL 87

Query: 125 AAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAA 184
           A +++L       P  +     V+ G+   +  FGVP VGG       YN    ++    
Sbjct: 88  AMVDAL-----WSPSAEAAAQ-VLEGMRDAAEKFGVPIVGGHTHPDSPYNA---LSVAIL 138

Query: 185 GIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFT 244
           G A+ + + S  A+  G  L+      GR               N           D  T
Sbjct: 139 GRARKDLLISFGAK-PGDRLILAIDLDGRVH--------PSPPPNW----------DATT 179

Query: 245 GKC--LLEACLELMNT----DAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVP 295
            K   LL   + L+        V A +D+   G+  +   +     +G  +DLD +P
Sbjct: 180 MKSPALLRRQIALLPELAERGLVHAAKDISNPGIIGTLGMLLEASGVGAEIDLDAIP 236


>gnl|CDD|30499 COG0150, PurM, Phosphoribosylaminoimidazole (AIR) synthetase
           [Nucleotide transport and metabolism].
          Length = 345

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 50/265 (18%), Positives = 93/265 (35%), Gaps = 52/265 (19%)

Query: 473 VAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVS 532
           VA C  +++  GA+PL   D L  G  +  E+  Q    VKGI E C+     +V G   
Sbjct: 85  VAMCVNDLVVQGAEPLFFLDYLATGKLD-PEVAAQI---VKGIAEGCKQAGCALVGG--- 137

Query: 533 FYNETNGQSIFPTPTIAG--------VGILPDYSLMTRIDSAHEGDLILMIGNDGCH--- 581
              ET   +  P     G        VG++    ++       EGD+I+ + + G H   
Sbjct: 138 ---ET---AEMPGMYRGGDYDLAGFAVGVVEKDEIIDGSKVK-EGDVIIGLASSGLHSNG 190

Query: 582 -------LDCSMYSLECASSNIGPPPKVDCHLEKNHGFF--VLSMINAKKITACHDISTG 632
                  ++ S    +            +  LE    +   VL++I    +     I+ G
Sbjct: 191 YSLVRKIIEESGLDYDDELPEELGKTLGEELLEPTRIYVKPVLALIKEGDVKGMAHITGG 250

Query: 633 GLIITLAEMTISSAKGMDIILPIEIEKDPKPFLFGEDQGR---------------YVVCI 677
           G +  L  +     +G+  ++       P  F + +  G                 V+ +
Sbjct: 251 GFVENLPRVL---PEGLGAVIDKPSWPPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIV 307

Query: 678 SPENQDLVMSEANNKNIPLRYLGKV 702
             E+ +  ++    +      +G+V
Sbjct: 308 PEEDAEKALALLKEQGETAYVIGRV 332



 Score = 38.6 bits (90), Expect = 0.005
 Identities = 69/358 (19%), Positives = 115/358 (32%), Gaps = 96/358 (26%)

Query: 62  TTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAAT-GVGGILR------ 114
           T    V+ G G  AG+ D+G                Y +P   + T GVG  L       
Sbjct: 30  TRRPEVMGGLGGFAGLFDLGQA--------------YYKPVLVSGTDGVGTKLLLAEDAG 75

Query: 115 ---------------DIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFG 159
                          D+   GA P+  ++ L  G +       ++ G+  G        G
Sbjct: 76  KHDTIGIDLVAMCVNDLVVQGAEPLFFLDYLATGKLDPEVAAQIVKGIAEG----CKQAG 131

Query: 160 VPTVGGEVEFLP-CYNNNII-VNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTG----- 212
              VGGE   +P  Y      +  FA G+ + + I        G  ++ L + +G     
Sbjct: 132 CALVGGETAEMPGMYRGGDYDLAGFAVGVVEKDEIIDGSKVKEGDVIIGLAS-SGLHSNG 190

Query: 213 ---------RDGIGGASMASEEFGENIAKK--RPTVQVGDPFTGKCLLEACLELMNTDAV 261
                      G+       EE G+ + ++   PT         +  ++  L L+    V
Sbjct: 191 YSLVRKIIEESGLDYDDELPEELGKTLGEELLEPT---------RIYVKPVLALIKEGDV 241

Query: 262 IAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPT-------CEEGMTAYEMMLSESQER 314
             +  +   G   +   +  +G LG  +D    P         + G    E M      R
Sbjct: 242 KGMAHITGGGFVENLPRVLPEG-LGAVIDKPSWPPPPIFKWLQKAGNVEREEMY-----R 295

Query: 315 -------MLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANLPIK 365
                  M++I+  E   KA  +L + G    +IG        RV     EV  + + 
Sbjct: 296 TFNMGVGMVLIVPEEDAEKALALLKEQGETAYVIG--------RVEAGEGEVVGVKLN 345


>gnl|CDD|100031 cd02195, SelD, Selenophosphate synthetase  (SelD) catalyzes the
           conversion of selenium to selenophosphate which is
           required by a number of bacterial, archaeal and
           eukaryotic organisms for synthesis of Secys-tRNA, the
           precursor of selenocysteine in selenoenzymes. The
           N-terminal domain of SelD is related to the ATP-binding
           domains of hydrogen expression/formation protein HypE,
           the AIR synthases, and FGAM synthase and is thought to
           bind ATP..
          Length = 287

 Score = 42.5 bits (101), Expect = 4e-04
 Identities = 71/314 (22%), Positives = 108/314 (34%), Gaps = 102/314 (32%)

Query: 67  VIQGPGENAGVVDIGGGDCVV-----FKMESHNHPSYIE-PY-QG--AATGVGGILRDIF 117
           V  G G++A V  + GG  +V     F       P  ++ PY  G  AA      L DI+
Sbjct: 36  VGLGTGDDAAVYRLPGGLALVQTTDFF-------PPIVDDPYLFGRIAAANA---LSDIY 85

Query: 118 TMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGG------EVEFLP 171
            MGA+P++A+  +          + +L  ++AG        G   VGG      E ++  
Sbjct: 86  AMGAKPLSALAIVTLPRKLPALQEEVLREILAGGKDKLREAGAVLVGGHTIEGPEPKY-- 143

Query: 172 CYNNNIIVNTFAA-GIAKTNAIFSSKARGIGLPLVYLGAKTGRD--------GIG---GA 219
                      +  G+   N I  +            GAK G D        G G    A
Sbjct: 144 ---------GLSVTGLVHPNKILRNS-----------GAKPG-DVLILTKPLGTGILFAA 182

Query: 220 SMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELM---NTDAVIAIQDMGAA------ 270
            MA    GE                    ++A LE M   N  A   ++  GA       
Sbjct: 183 EMAGLARGE-------------------DIDAALESMARLNRAAAELLRKYGAHACTDVT 223

Query: 271 --GLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQ 328
             GL    +EM     +   +DLDK+P  +   T+  ++ +         + PE      
Sbjct: 224 GFGLLGHLLEMARASGVSAEIDLDKLPLLQ---TSGGLLAA---------VPPEDAAALL 271

Query: 329 EILNKWGLHFSIIG 342
            +L   G   +IIG
Sbjct: 272 ALLKAGGPPAAIIG 285



 Score = 31.7 bits (73), Expect = 0.77
 Identities = 69/291 (23%), Positives = 110/291 (37%), Gaps = 64/291 (21%)

Query: 433 PGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITD 492
            G DA V R+      AL  ++D  P  V  DP+   + A A    +I A GAKPL+   
Sbjct: 40  TGDDAAVYRL--PGGLALVQTTDFFPPIV-DDPYLFGRIAAANALSDIYAMGAKPLSALA 96

Query: 493 NLNFGNPEKEEIMGQFV--HSVKGIREACQILDFPIVSGNVSFYNETNGQSIF-PTPTIA 549
            +    P K   + + V    + G ++  +     +V G         G +I  P P   
Sbjct: 97  IVTL--PRKLPALQEEVLREILAGGKDKLREAGAVLV-G---------GHTIEGPEPKYG 144

Query: 550 GV--GILPDYSLMTRIDSAHEGD-LIL-------------MIG-NDGCHLDCSMYSLECA 592
               G++    ++     A  GD LIL             M G   G  +D ++ S+  A
Sbjct: 145 LSVTGLVHPNKILRN-SGAKPGDVLILTKPLGTGILFAAEMAGLARGEDIDAALESM--A 201

Query: 593 SSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTG-GLIITLAEMTISSAKGMDI 651
             N     +    L + +G             AC D+ TG GL+  L EM  +S      
Sbjct: 202 RLN-----RAAAELLRKYG-----------AHACTDV-TGFGLLGHLLEMARASG----- 239

Query: 652 ILPIEIEKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKV 702
            +  EI+ D  P L  +  G  +  + PE+   +++       P   +G+V
Sbjct: 240 -VSAEIDLDKLPLL--QTSGGLLAAVPPEDAAALLALLKAGGPPAAIIGEV 287


>gnl|CDD|32156 COG1973, HypE, Hydrogenase maturation factor [Posttranslational
           modification, protein turnover, chaperones].
          Length = 449

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 68/340 (20%), Positives = 124/340 (36%), Gaps = 49/340 (14%)

Query: 54  KKWLRTLPTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGIL 113
           +K       TG  V     ++AGVV I     VV     H+  S   P+          L
Sbjct: 93  EKLAELAGKTGAVVSPEELDDAGVVRIENDYIVVAIDGIHSRLSEF-PFLAGFHVTRAAL 151

Query: 114 RDIFTMGARPVAAMNSLRFGAIHHPKTKHL--------LSGVVAGIAGYSNSFGVPTVGG 165
           RD++ MGARPVA ++ +           HL        L    AG+   S + GVP + G
Sbjct: 152 RDVYVMGARPVALISDI-----------HLADDGDVGKLFDFTAGVTAVSEAVGVPLLAG 200

Query: 166 EVEFLP---CYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMA 222
               +       + ++    A GI+K+      +A    + L+  GA       GG ++A
Sbjct: 201 STLRIGGDMVLGDRLVGAVGAIGISKSELTPRRRAEPGDVILMTEGA-------GGGTIA 253

Query: 223 SEEFGENIAKK-RPTVQVGDPFTGKCLLEACLELMNTD---AVIAIQDMGAAGLTCSAIE 278
           +      +      T+ V         + AC  ++ +     V ++ D+   G+   A+E
Sbjct: 254 TTAIYHGMHDVVEETLNVDF-------IRACEAIVRSGLLSDVHSMTDVTNGGIRGDALE 306

Query: 279 MGNQGNLGITLDLDKV-----PTCEEGMTAYEM-MLSESQERMLMILNPEKQHKAQEILN 332
           +     + +  D +KV     P   + +    +  L  S + +++I   +     ++ L 
Sbjct: 307 ISKTAGVSLVFDEEKVRSLINPKVLKMLEELNIDPLGVSIDSLMIIAPEDVADLVKKALR 366

Query: 333 KWGLHFSIIGITTNDKLFRVIHRGEEVANLPIKALSDEAP 372
             G+    +G         ++  G E     +K    E+ 
Sbjct: 367 GAGVRAEEVGRVEEGGQGVILVDGGE--ERELKPRFRESA 404



 Score = 34.5 bits (79), Expect = 0.096
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 10/145 (6%)

Query: 436 DAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLN 495
           DAGV+R+E      +  + D     +   PF           R++   GA+P+A+  +++
Sbjct: 113 DAGVVRIE---NDYIVVAIDGIHSRLSEFPFLAGFHVTRAALRDVYVMGARPVALISDIH 169

Query: 496 FGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVG-IL 554
             +   +  +G+      G+    + +  P+++G+        G  +     +  VG I 
Sbjct: 170 LAD---DGDVGKLFDFTAGVTAVSEAVGVPLLAGSTL---RIGGDMVLGDRLVGAVGAIG 223

Query: 555 PDYSLMTRIDSAHEGDLILMIGNDG 579
              S +T    A  GD+ILM    G
Sbjct: 224 ISKSELTPRRRAEPGDVILMTEGAG 248


>gnl|CDD|100036 cd02691, PurM-like2, AIR synthase (PurM) related protein, archaeal
           subgroup 2 of unknown function. The family of PurM
           related proteins includes Hydrogen expression/formation
           protein HypE, AIR synthases, FGAM synthase and
           Selenophosphate synthetase (SelD). They all contain two
           conserved domains and seem to dimerize. The N-terminal
           domain forms the dimer interface and is a putative ATP
           binding domain..
          Length = 346

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 75/350 (21%), Positives = 125/350 (35%), Gaps = 70/350 (20%)

Query: 63  TGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGAR 122
           TG+  I    ++AGV        VV     H+  S   P+          LRD+  MGAR
Sbjct: 27  TGEVSIVAQDDDAGVDAADVEYIVVAIDGIHSRLSDF-PFLAGFHATRAALRDVMVMGAR 85

Query: 123 PVAAMNSLRFGAIHHPKTKHL--------LSGVVAGIAGYSNSFGVPTVGGEVEFLPCYN 174
           PVA ++ +           HL        L    AG+   S + GVP V G    L    
Sbjct: 86  PVALLSDI-----------HLADDGDVGKLFDFTAGVTAVSEATGVPLVAGST--LRIGG 132

Query: 175 NNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTG-----RDGIGGASMASEEFGEN 229
           + ++ +    G+    A+  SK      P     A+ G      +G GG ++ +      
Sbjct: 133 DMVLGDRLVGGVG---AVGRSK----SDPSRRKNAEPGDLILMTEGAGGGTITTTA---- 181

Query: 230 IAKKRP-----TVQVGDPFTGKCLLEACLELMNT---DAVIAIQDMGAAGLTCSAIEMGN 281
           I    P     T+ V         ++AC  L ++     V ++ D+   G+   A+E+  
Sbjct: 182 IYHGMPDVVEETLNVDF-------IKACEALRDSGLVSKVHSMTDVTNGGIRGDALEISK 234

Query: 282 QGNLGITLDLDKVPTCEEGMTAYEMM-------LSESQERMLMILNPEKQHKAQEILNKW 334
              + +  D +KV +        +M+       L  S + +++I   E        L + 
Sbjct: 235 TAGVSLVFDEEKVRSLINP-KVLKMLEELGIDPLGVSLDSLMIIAPEEDAVDIIRTLREA 293

Query: 335 GLHFSIIGITTNDKLFRVIHRGE---------EVANLPIKALSDEAPEYD 375
           G+    +G     +   ++  GE         E A  PIK +  E    D
Sbjct: 294 GVRADEVGRVEEGRGVPLVVTGEGRELKPAFRESAYTPIKKVVGEYSPGD 343


>gnl|CDD|100032 cd02196, PurM, PurM (Aminoimidazole Ribonucleotide [AIR]
           synthetase), one of eleven enzymes required for purine
           biosynthesis, catalyzes the conversion of
           formylglycinamide ribonucleotide (FGAM) and ATP to AIR,
           ADP, and Pi, the fifth step in de novo purine
           biosynthesis. The N-terminal domain of PurM is related
           to the ATP-binding domains of hydrogen
           expression/formation protein HypE, the AIR synthases,
           selenophosphate synthetase (SelD), and FGAM synthase and
           is thought to bind ATP..
          Length = 297

 Score = 36.7 bits (86), Expect = 0.022
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 22/117 (18%)

Query: 473 VAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVS 532
           VA C  +I+  GA+PL   D +  G  +  E+  +    VKGI E C+     ++ G   
Sbjct: 50  VAMCVNDILCQGAEPLFFLDYIATGKLD-PEVAAEI---VKGIAEGCRQAGCALLGG--- 102

Query: 533 FYNETNGQSIFP---TPT---IAG--VGILPDYSLMTRIDSAHEGDLILMIGNDGCH 581
              ET   +  P         +AG  VG++    ++        GD+++ + + G H
Sbjct: 103 ---ET---AEMPGVYAEGEYDLAGFAVGVVEKDKIIDG-SKIKPGDVLIGLPSSGLH 152



 Score = 28.2 bits (64), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 315 MLMILNPEKQHKAQEILNKWGLHFSIIG 342
           M++I++ E   +  EIL K G    +IG
Sbjct: 267 MVLIVSEEDADEVLEILEKLGEKAYVIG 294


>gnl|CDD|100033 cd02197, HypE, HypE (Hydrogenase expression/formation protein).
           HypE is involved in Ni-Fe hydrogenase biosynthesis.
           HypE dehydrates its own carbamoyl moiety in an
           ATP-dependent process to yield the enzyme thiocyanate.
           The N-terminal domain of HypE is related to the
           ATP-binding domains of the AIR synthases,
           selenophosphate synthetase (SelD), and FGAM synthase and
           is thought to bind ATP..
          Length = 293

 Score = 36.3 bits (85), Expect = 0.032
 Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 37/190 (19%)

Query: 484 GAKPLAITDNL----NFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNG 539
           GAKPL ++        F   + E I       VK + EA +     IV+G+     +   
Sbjct: 74  GAKPLYLSLGFILEEGFPLEDLERI-------VKSMAEAAREAGVKIVTGDTKVVPKGKA 126

Query: 540 QSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILM---IGNDGCHLDCSMYSLECASSNI 596
             IF   T  G+G++P   ++    +   GD I++   IG+ G  +  +   L       
Sbjct: 127 DGIFINTT--GIGVIPR-GVIISPSNIRPGDKIIVSGTIGDHGAAILAAREGLG-----F 178

Query: 597 GPPPKVDC----HLEKNHGFFVLSMINAK-KITACHDISTGGLIITLAEMTISSAKGMDI 651
               + DC     L       V +++ A   I A  D + GGL   L E+  +S  G++I
Sbjct: 179 ETDIESDCAPLNGL-------VEALLEAGPGIHAMRDPTRGGLAAVLNEIARASGVGIEI 231

Query: 652 I---LPIEIE 658
               +P+  E
Sbjct: 232 EEEAIPVREE 241



 Score = 29.0 bits (66), Expect = 5.4
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 278 EMGNQGNLGITLDLDKVPTCEEGMTAYEMM----LSESQE-RMLMILNPEKQHKAQEILN 332
           E+     +GI ++ + +P  EE   A EM+    L  + E + + I+ PE   +  E L 
Sbjct: 220 EIARASGVGIEIEEEAIPVREEVRGACEMLGLDPLYLANEGKFVAIVPPEDAEEVLEALR 279

Query: 333 K--WGLHFSIIG 342
               G   +IIG
Sbjct: 280 SHPLGKEAAIIG 291


>gnl|CDD|35458 KOG0237, KOG0237, KOG0237, Glycinamide ribonucleotide synthetase
           (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS)
           [Nucleotide transport and metabolism].
          Length = 788

 Score = 34.1 bits (78), Expect = 0.13
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 21/117 (17%)

Query: 473 VAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVS 532
           VA    +II  GA+PL   D    G  +   +  Q    VKGI E C+     +V G  +
Sbjct: 519 VAMNVNDIIVQGAEPLFFLDYFATGKLDV-SVAEQV---VKGIAEGCRQAGCALVGGETA 574

Query: 533 ----FYNE----TNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCH 581
                Y        G +         VG +    ++ +++    GD++L + + G H
Sbjct: 575 EMPGMYAPGEYDLAGFA---------VGAVERTDILPKLNEIVAGDVLLGLPSSGVH 622


>gnl|CDD|32221 COG2038, CobT, NaMN:DMB phosphoribosyltransferase [Coenzyme
           metabolism].
          Length = 347

 Score = 31.0 bits (70), Expect = 1.1
 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 14/98 (14%)

Query: 179 VNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQ 238
           V   AAG A  N + +       +P + L  +   D   G +M+ EE    I        
Sbjct: 88  VINRAAGGAAINVLAAGAGAKPKVPDIGLDGRPTGDIAEGPAMSEEEAEAAIEA------ 141

Query: 239 VGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSA 276
                 GK L        N D ++ I + G    T +A
Sbjct: 142 ------GKEL--GKELAKNGDDLLIIGESGPGNTTTAA 171


>gnl|CDD|35479 KOG0258, KOG0258, KOG0258, Alanine aminotransferase [Amino acid
           transport and metabolism].
          Length = 475

 Score = 30.6 bits (69), Expect = 1.5
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 9/75 (12%)

Query: 139 KTKHLLSGVVAGIAGYSNSFGVPTVGGEV-EFL------PCYNNNIIVNTFAAGIAKT-- 189
           + K +L+     +  YS+S GVP V   V EF+      P    +I + T A+   ++  
Sbjct: 94  RAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSIL 153

Query: 190 NAIFSSKARGIGLPL 204
           + + + K  G+ +P+
Sbjct: 154 SLLIAGKKTGVLIPI 168


>gnl|CDD|33337 COG3535, COG3535, Uncharacterized conserved protein [Function
           unknown].
          Length = 357

 Score = 30.6 bits (69), Expect = 1.7
 Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 240 GDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEE 299
           GDP+ GK +    ++      V+ + ++       +   MG        + ++K+P  +E
Sbjct: 26  GDPYIGKLMALRAMKEGGPIKVLDVDEIAEDDFVATVGMMGAP-----IVGIEKLPNGDE 80

Query: 300 GMTAYEMM 307
            + A+E++
Sbjct: 81  AIRAFEVL 88


>gnl|CDD|37985 KOG2774, KOG2774, KOG2774, NAD dependent epimerase [General
           function prediction only].
          Length = 366

 Score = 30.0 bits (67), Expect = 2.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 395 DEDCTKSLLKLLSSPNLSSRRWVY 418
           D DC  S+++LL++ + S +R  Y
Sbjct: 256 DTDCMASVIQLLAADSQSLKRRTY 279


>gnl|CDD|31053 COG0709, SelD, Selenophosphate synthase [Amino acid transport and
           metabolism].
          Length = 346

 Score = 29.5 bits (66), Expect = 3.5
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 72  GENAGVVDIGGGDCVV----FKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAM 127
           G++A V D+G G  ++    F M     P   +P+          + D+F MG +P+ A+
Sbjct: 49  GDDAAVYDLGNGHSIISTTDFFM-----PIVDDPFDFGRIAATNAISDVFAMGGKPIMAI 103

Query: 128 NSLRF 132
             L F
Sbjct: 104 AILGF 108


>gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease,
           Peptidase S8 family domain in Thiazoline
           oxidase/subtilisin-like proteases.  Thiazoline
           oxidase/subtilisin-like protease is produced by the
           symbiotic bacteria Prochloron spp. that inhabit didemnid
           family ascidians.  The cyclic peptides of the
           patellamide class found in didemnid extracts are now
           known to be synthesized by the Prochloron spp.  The
           prepatellamide is heterocyclized to form thiazole and
           oxazoline rings and the peptide is cleaved to form the
           two cyclic patellamides A and C.  Subtilases, or
           subtilisin-like serine proteases, have an Asp/His/Ser
           catalytic triad similar to that found in trypsin-like
           proteases, but do not share their three-dimensional
           structure (an example of convergent evolution).
          Length = 267

 Score = 29.6 bits (67), Expect = 3.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 504 IMGQFVHSVKGIREACQILDFPIVSGNVSFYNETN 538
           I GQ   SV+GI   C+ L+ PI + +    ++ +
Sbjct: 60  IFGQPCSSVEGIAPLCRGLNIPIFAEDRRGCSQLD 94


>gnl|CDD|145564 pfam02491, FtsA, Cell division protein FtsA.  FtsA is essential for
           bacterial cell division, and co-localizes to the septal
           ring with FtsZ. It has been suggested that the
           interaction of FtsA-FtsZ has arisen through coevolution
           in different bacterial strains. The FtsA protein
           contains two structurally related actin-like ATPase
           domains which are also structurally related to the
           ATPase domains of HSP70 (see PF00012).
          Length = 163

 Score = 29.1 bits (66), Expect = 4.7
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 12/44 (27%)

Query: 77  VVDIGGG--DCVVFKMESHNHPSYIEPYQGAATGVGG--ILRDI 116
           ++DIG G  D  + K  S  + S I        GVGG  I  DI
Sbjct: 3   LIDIGSGKTDIAIAKDGSLGYISVI--------GVGGGHITDDI 38


>gnl|CDD|132919 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PYR) binding domain
           of the beta subunits of the E1 components of human
           pyruvate dehydrogenase complex (E1- PDHc) and related
           proteins.  Thiamine pyrophosphate (TPP) family,
           pyrimidine (PYR) binding domain of the beta subunits of
           the E1 components of: human pyruvate dehydrogenase
           complex (E1- PDHc), the acetoin dehydrogenase complex
           (ADC), and the branched chain alpha-keto acid
           dehydrogenase/2-oxoisovalerate dehydrogenase complex
           (BCADC), subfamily. The PYR domain is found in many key
           metabolic enzymes which use TPP (also known as thiamine
           diphosphate) as a cofactor. TPP binds in the cleft
           formed by a PYR domain and a PP domain. The PYR domain,
           binds the aminopyrimidine ring of TPP, the PP domain
           binds the diphosphate residue. A polar interaction
           between the conserved glutamate of the PYR domain and
           the N1' of the TPP aminopyrimidine ring is shared by
           most TPP-dependent enzymes, and participates in the
           activation of TPP. The PYR and PP domains have a common
           fold, but do not share strong sequence conservation. The
           PP domain is not included in this sub-family. E1-PDHc is
           an alpha2beta2 dimer-of-heterodimers having two active
           sites lying between PYR and PP domains of separate
           subunits, the PYR domains are arranged on the beta
           subunit, the PP domains on the alpha subunits. PDHc
           catalyzes the irreversible oxidative decarboxylation of
           pyruvate to produce acetyl-CoA in the bridging step
           between glycolysis and the citric acid cycle. ADC
           participates in the breakdown of acetoin. BCADC
           catalyzes the oxidative decarboxylation of
           4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and
           3-methyl-2-oxobutanoate during the breakdown of branched
           chain amino acids.
          Length = 167

 Score = 29.0 bits (66), Expect = 5.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 656 EIEKDPKPFLFGEDQGRY 673
           E+E+DP+  + GED G Y
Sbjct: 10  EMERDPRVVVLGEDVGDY 27


>gnl|CDD|145819 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel
           domain. 
          Length = 516

 Score = 28.7 bits (65), Expect = 5.7
 Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 10/49 (20%)

Query: 97  SYIEPYQGAATGVGGILRDIFTM-------GARPVAAMNSLRFGAIHHP 138
           S I    G ++GV   L+            G R  A    L    + HP
Sbjct: 45  SPIRGTGGVSSGVVPFLKVFDDTARYVNQGGKRRGAVAVYLE---VWHP 90


>gnl|CDD|119321 cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of
           Escherichia coli AraH and related proteins. E. coli AraH
           is the TM of a Periplasmic Binding Protein
           (PBP)-dependent ATP-Binding Cassette (ABC) transporter
           involved in the uptake of the monosaccharide arabinose.
           This group also contains E. coli RbsC, AlsC, and MglC,
           which are TMs of other monosaccharide transporters, the
           ribose transporter, the D-allose transporter and the
           galactose transporter, respectively. The D-allose
           transporter may also be involved in low affinity ribose
           transport. These transporters generally bind type 1
           PBPs. PBP-dependent ABC transporters consist of a PBP,
           two TMs, and two cytoplasmic ABCs, and are mainly
           involved in importing solutes from the environment. The
           solute is captured by the PBP, which delivers it to a
           gated translocation pathway formed by the two TMs. The
           two ABCs bind and hydrolyze ATP and drive the transport
           reaction. Proteins in this subgroup have a single TM
           which homodimerizes to generate the transmembrane pore..
          Length = 263

 Score = 28.5 bits (65), Expect = 6.0
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 13/64 (20%)

Query: 114 RDIFTMGARPVAAMNSLRFGAIHHPKTK---HLLSGVVAGIAG-----YSNSFGVPTVGG 165
           R ++ +G  P AA    R   I+  + K   ++LSG++AG+AG        S   PT G 
Sbjct: 143 RYLYAVGGNPEAA----RLSGINVRRVKILAYVLSGLLAGLAGILLAARLGS-AQPTAGN 197

Query: 166 EVEF 169
             E 
Sbjct: 198 GYEL 201


>gnl|CDD|58169 cd03522, MoeA_like, MoeA_like. This domain is similar to a domain
           found in a variety of proteins involved in biosynthesis
           of molybdopterin cofactor, like MoaB, MogA, and MoeA.
           There this domain is presumed to bind molybdopterin. The
           exact function of this subgroup is unknown..
          Length = 312

 Score = 28.6 bits (64), Expect = 7.4
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 209 AKTGRDGIGGASMASEEFGENIAKKR-------PTVQVGDPFTGKCLLEA---CLELMNT 258
              G++ +  A +   +  E+ A  R         +++ +P  G+  L A    L  ++ 
Sbjct: 36  LAAGKEHVYVARLEPGDVHEDEAAARLAAALAGDGLRLSEPAEGRVNLFAERAGLLKVDV 95

Query: 259 DAVIAIQDMGA 269
           +A+ A+  + A
Sbjct: 96  EALDALNAIDA 106


>gnl|CDD|63857 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein
           [GAP] for Rho-like small GTPases) domain present in the
           p85 isoforms of the regulatory subunit of the class IA
           PI3K (phosphatidylinositol 3'-kinase). This domain is
           also called Bcr (breakpoint cluster region protein)
           homology (BH) domain. Class IA PI3Ks are heterodimers,
           containing a regulatory subunit (p85) and a catalytic
           subunit (p110) and are activated by growth factor
           receptor tyrosine kinases (RTKs); this activation is
           mediated by the p85 subunit. p85 isoforms, alpha and
           beta, contain a C-terminal p110-binding domain flanked
           by two SH2 domains, an N-terminal SH3 domain, and a
           RhoGAP domain flanked by two proline-rich regions. Small
           GTPases cluster into distinct families, and all act as
           molecular switches, active in their GTP-bound form but
           inactive when GDP-bound. The Rho family of GTPases
           activates effectors involved in a wide variety of
           developmental processes, including regulation of
           cytoskeleton formation, cell proliferation and the JNK
           signaling pathway. GTPases generally have a low
           intrinsic GTPase hydrolytic activity but there are
           family-specific groups of GAPs that enhance the rate of
           GTP hydrolysis by several orders of magnitude..
          Length = 200

 Score = 28.4 bits (63), Expect = 7.6
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 364 IKALSDEAPEYDRAWCEPITIPP------SNPQLLCSDEDCTKSLLKLLSSPNLSSRRWV 417
           + AL+D    Y      P+   P      S  Q + S ++  + L KL+ SPNL  + W+
Sbjct: 66  VAALADALKRYLLDLPNPVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWL 125

Query: 418 YEQY 421
             QY
Sbjct: 126 TLQY 129


>gnl|CDD|29149 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A';
           bacterial DNA topoisomerase IV (C subunit, ParC),
           bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
           toposiomerases II. DNA topoisomerases are essential
           enzymes that regulate the conformational changes in DNA
           topology by catalysing the concerted breakage and
           rejoining of DNA strands during normal cellular growth..
          Length = 445

 Score = 28.2 bits (63), Expect = 8.3
 Identities = 11/29 (37%), Positives = 12/29 (41%)

Query: 365 KALSDEAPEYDRAWCEPITIPPSNPQLLC 393
               D  P YD    EP  +PP  P LL 
Sbjct: 111 DPTVDFVPNYDGQEVEPEVLPPIFPNLLV 139


>gnl|CDD|177066 CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit;
           Validated.
          Length = 327

 Score = 28.2 bits (63), Expect = 8.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 656 EIEKDPKPFLFGEDQGRY 673
           E+ +DP+ F+ GED G Y
Sbjct: 17  EMARDPRVFVIGEDVGHY 34


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.318    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 9,023,065
Number of extensions: 489466
Number of successful extensions: 1210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1145
Number of HSP's successfully gapped: 69
Length of query: 737
Length of database: 6,263,737
Length adjustment: 101
Effective length of query: 636
Effective length of database: 4,081,228
Effective search space: 2595661008
Effective search space used: 2595661008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.6 bits)