RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter asiaticus str. psy62] (737 letters) >gnl|CDD|30395 COG0046, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]. Length = 743 Score = 863 bits (2232), Expect = 0.0 Identities = 334/726 (46%), Positives = 444/726 (61%), Gaps = 15/726 (2%) Query: 13 AHGLTKDECDQIIHIL-KRQPTLTEIGIISAMWNEHCSYKSSKKWLRTLPTT--GKHVIQ 69 L+ DE D I L R+PT TE+G+ + MW+EHCSYKSSK L+ PTT G++V+ Sbjct: 21 GLALSDDEYDYIREFLLGREPTDTELGMFAQMWSEHCSYKSSKSLLKMFPTTHTGEYVLS 80 Query: 70 GPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNS 129 GPG+NAGVVDIG G VVFK+ESHNHPS IEPYQGAATGVGGI+RD+ +MGARP+A ++S Sbjct: 81 GPGDNAGVVDIGDGWAVVFKVESHNHPSAIEPYQGAATGVGGIIRDVLSMGARPIALLDS 140 Query: 130 LRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKT 189 LRFG KT++++ GVVAGIA Y N GVPTVGGE F Y N +VN G+ + Sbjct: 141 LRFGIPDIEKTRYIMKGVVAGIAAYGNEIGVPTVGGEFRFDESYVGNPLVNAGCVGLIRK 200 Query: 190 NAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAK-KRPTVQVGDPFTGKCL 248 I +A G G L+ LG KTGRDGIGGA+ AS E GE + RP+VQVGDPF K L Sbjct: 201 EHIVKGEAIGPGDKLILLGGKTGRDGIGGATFASMELGEESEEEDRPSVQVGDPFMEKRL 260 Query: 249 LEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMML 308 EA LE + T + IQD+GA GL+C+ E+ +G LG +DLDKVP E GM+ YE+ L Sbjct: 261 QEAILECVQTGLIKGIQDLGAGGLSCAISELAAKGGLGAEIDLDKVPLREPGMSPYEIWL 320 Query: 309 SESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANLPIKALS 368 SESQERML+++ PE + EI K L +++G T++ V +GE V +LPI L+ Sbjct: 321 SESQERMLLVVAPEDVEEFLEICEKERLPAAVVGEVTDEPRLVVDWKGEPVVDLPIDVLA 380 Query: 369 DEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQYDTMIQSN 428 +AP+YDR EP + + D ++LLK+LSSPN++S+ W+YEQYD + N Sbjct: 381 GKAPKYDRPVKEPKK-EEAGDVPEPEEPDLEEALLKVLSSPNVASKEWLYEQYDRSVGGN 439 Query: 429 SIQLPG--GDAGVIRVE--GHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATG 484 ++ PG DA V+R+ K LA ++ PRY DP+ G K AVAE RN+ ATG Sbjct: 440 TVVDPGPVADAAVLRISEDSGTGKGLAMTTGENPRYALLDPYAGAKLAVAEALRNLAATG 499 Query: 485 AKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFP 544 AKPLA+TDNLNFGNPEK E+MGQFV +V G+ EAC+ L P+V GNVS YNETNGQ I P Sbjct: 500 AKPLALTDNLNFGNPEKPEVMGQFVAAVAGLAEACRALGIPVVGGNVSLYNETNGQPIPP 559 Query: 545 TPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDC 604 TP I VG++ D + + G L+ ++G L S + GPPP VD Sbjct: 560 TPVIGAVGLVEDVRKVLTPELKKAGLLLYLLGETKDELGGSELAQVYHGLGDGPPPVVDL 619 Query: 605 HLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKPF 664 EK + ++I K+ A HD+S GGL + LAEM + G++I L + Sbjct: 620 AEEKKFFDAIRALIADGKVLAAHDVSDGGLAVALAEMAFAGGIGLEIDLDELGDDRLDAL 679 Query: 665 LFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGSTLSI----HNILNIPVATL 720 LF E GR +V ++ E ++ +EA +PL+ +G V G ++ + V L Sbjct: 680 LFSESLGRVIVVVAEEEAEVEGAEA--VGVPLKVIGLVGGDHEIGAAVNEFLVPVSVEEL 737 Query: 721 QTKYES 726 + +E Sbjct: 738 REAWEG 743 >gnl|CDD|100034 cd02203, PurL_repeat1, PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.. Length = 313 Score = 457 bits (1178), Expect = e-129 Identities = 154/336 (45%), Positives = 204/336 (60%), Gaps = 32/336 (9%) Query: 36 EIGIISAMWNEHCSYKSSKKWLRTLPTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNH 95 E+G+ + MW+EHC +KS K L+ + VVFK+E+HNH Sbjct: 1 ELGMFAQMWSEHCRHKSFKSLLKMI-----------------------WAVVFKVETHNH 37 Query: 96 PSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHP--------KTKHLLSGV 147 PS IEP+ GAATGVGGI+RDI +MGARP+A ++ LRFG + P + +L GV Sbjct: 38 PSAIEPFGGAATGVGGIIRDILSMGARPIALLDGLRFGDLDIPGYEPKGKLSPRRILDGV 97 Query: 148 VAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYL 207 VAGI+ Y N G+PTVGGEV F P Y N +VN GI + I SKA G G +V + Sbjct: 98 VAGISDYGNCIGIPTVGGEVRFDPSYYGNPLVNVGCVGIVPKDHIVKSKAPGPGDLVVLV 157 Query: 208 GAKTGRDGIGGASMASEEFGEN-IAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQD 266 G +TGRDGIGGA+ +S+E EN RP VQVGDPF K L EA LE T ++ IQD Sbjct: 158 GGRTGRDGIGGATFSSKELSENSSELDRPAVQVGDPFMEKKLQEAILEARETGLIVGIQD 217 Query: 267 MGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHK 326 +GA GL+ + EM +G LG +DLDKVP E GM+ +E+ +SESQERML+++ PE + Sbjct: 218 LGAGGLSSAVSEMAAKGGLGAEIDLDKVPLREPGMSPWEIWISESQERMLLVVPPEDLEE 277 Query: 327 AQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANL 362 I K L ++IG T+D R+ ++GE VA+L Sbjct: 278 FLAICKKEDLEAAVIGEVTDDGRLRLYYKGEVVADL 313 Score = 70.2 bits (173), Expect = 2e-12 Identities = 58/259 (22%), Positives = 101/259 (38%), Gaps = 47/259 (18%) Query: 478 RNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGI-REACQ-ILDF------PIVSG 529 R+I++ GA+P+A+ D L FG+ + + S + I I D+ P V G Sbjct: 56 RDILSMGARPIALLDGLRFGDLDIPGYEPKGKLSPRRILDGVVAGISDYGNCIGIPTVGG 115 Query: 530 NVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGN----DGCH---- 581 V F G P + VGI+P + + + GDL++++G DG Sbjct: 116 EVRFDPSYYGN---PLVNVGCVGIVPK-DHIVKSKAPGPGDLVVLVGGRTGRDGIGGATF 171 Query: 582 ----LDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIIT 637 L + L+ + +G P +EK +L I D+ GGL Sbjct: 172 SSKELSENSSELDRPAVQVGDPF-----MEKKLQEAILEARETGLIVGIQDLGAGGLSSA 226 Query: 638 LAEMTISSAKGMDIIL-----------PIEIEKDPKPFLFGEDQGRYVVCISPENQDLVM 686 ++EM G +I L P EI E Q R ++ + PE+ + + Sbjct: 227 VSEMAAKGGLGAEIDLDKVPLREPGMSPWEI-------WISESQERMLLVVPPEDLEEFL 279 Query: 687 SEANNKNIPLRYLGKVSGS 705 + +++ +G+V+ Sbjct: 280 AICKKEDLEAAVIGEVTDD 298 >gnl|CDD|100035 cd02204, PurL_repeat2, PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.. Length = 264 Score = 301 bits (773), Expect = 6e-82 Identities = 110/268 (41%), Positives = 147/268 (54%), Gaps = 5/268 (1%) Query: 436 DAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLN 495 DA V+R+ G K LA S+ PRY DP+ G AVAE RN++A GA PLAITD LN Sbjct: 1 DAAVLRIPGETDKGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAVGADPLAITDCLN 60 Query: 496 FGNPEK-EEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGIL 554 FGNPEK E MGQ V +V G+ +AC+ L P++ G S YNET G +I PT I VG++ Sbjct: 61 FGNPEKPEGEMGQLVEAVLGLGDACRALGTPVIGGKDSLYNETEGVAIPPTLVIGAVGVV 120 Query: 555 PDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFV 614 D + +D EGDL+ +IG L S Y+L G PP VD EK V Sbjct: 121 DDVRKIVTLDFKKEGDLLYLIGETKDELGGSEYALAYHGLGGGAPPLVDLEREKALFDAV 180 Query: 615 LSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKPFLFGEDQGRYV 674 +I + + HD+S GGL + LAEM + G ++ L + +D LF E GR + Sbjct: 181 QELIKEGLVLSAHDVSDGGLAVALAEMAFAGGLGAEVDLSKDDAED--ELLFSESLGRVL 238 Query: 675 VCISPENQDLVMSEANNKNIPLRYLGKV 702 V + PEN+++ EA +P +G V Sbjct: 239 VEVKPENEEVF--EAEEAGVPATVIGTV 264 Score = 74.1 bits (183), Expect = 1e-13 Identities = 70/280 (25%), Positives = 111/280 (39%), Gaps = 27/280 (9%) Query: 75 AGVVDIGGGD--CVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRF 132 A V+ I G + + S ++PY GAA V +R++ +GA P+A + L F Sbjct: 2 AAVLRIPGETDKGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAVGADPLAITDCLNF 61 Query: 133 GAIHHPKTK-HLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN------TFAAG 185 G P+ + L V G+ + G P +GG+ YN V A G Sbjct: 62 GNPEKPEGEMGQLVEAVLGLGDACRALGTPVIGGKDSL---YNETEGVAIPPTLVIGAVG 118 Query: 186 IAK-TNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFT 244 + I + + G L +G G ++A G P V D Sbjct: 119 VVDDVRKIVTLDFKKEGDLLYLIGETKDELGGSEYALAYHGLGGGAP---PLV---DLER 172 Query: 245 GKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAY 304 K L +A EL+ V++ D+ GL + EM G LG +DL K Sbjct: 173 EKALFDAVQELIKEGLVLSAHDVSDGGLAVALAEMAFAGGLGAEVDLSKDD------AED 226 Query: 305 EMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGIT 344 E++ SES R+L+ + PE ++ + G+ ++IG Sbjct: 227 ELLFSESLGRVLVEVKPE--NEEVFEAEEAGVPATVIGTV 264 >gnl|CDD|37118 KOG1907, KOG1907, KOG1907, Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]. Length = 1320 Score = 177 bits (450), Expect = 1e-44 Identities = 161/713 (22%), Positives = 282/713 (39%), Gaps = 84/713 (11%) Query: 86 VVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG--ARPVAAMNSLRFGAIHHPKTKH- 142 ++FK E+HNHP+ + P+ GA TG GG +RD G + +A G ++ P K Sbjct: 306 LLFKAETHNHPTAVSPFPGATTGTGGRIRDEGATGRGSYEIAGTAGYSVGDLNIPGYKQP 365 Query: 143 -----------------LLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNT---- 181 ++ G + Y N FG P + G + + +++ Sbjct: 366 WEDLDFGYPYHIASPLDIMIEASNGASDYGNKFGEPVISG---YARTFGMRVLLENGERR 422 Query: 182 -------FAAGIAKTNAIFSSKAR-GIGLPLVYLGAKTGRDGIGGASMASEEFGENIAK- 232 F+ GI + K G L+ +G R G+GG + +S GE A+ Sbjct: 423 EYHKPIMFSGGIGTIRKQHARKEPIAPGQLLIKIGGPVYRIGVGGGAASSVVQGEGSAEL 482 Query: 233 KRPTVQVGDP-FTGKC--LLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITL 289 VQ GD K ++ AC EL + + +I D GA G E+ +LG T Sbjct: 483 DFAAVQRGDAEMERKLQRVVRACAELGENNPIQSIHDQGAGGNGNVLKELVEDNDLGATF 542 Query: 290 DLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKL 349 D + M+ E+ +E QE +++ E + I + S++G T ++ Sbjct: 543 DSRTFQLGDPSMSPMEIWCAEYQENYALLVKAEDLDILESICKRERCPVSVVGEVTGEQR 602 Query: 350 FRVIHR--GEEVANLPIKALSDEAPEYDRAWCEPITIPPSN--PQLLCSDEDCTKSLLKL 405 ++ + E +L ++ L + P+ R + P L S +L ++ Sbjct: 603 VILLDKLAKETAIDLEMRQLLGKPPKMSR----KLKRAPRVLKKLELPSGLTLRDALERV 658 Query: 406 LSSPNLSSRRWVYEQYDTMIQS--------NSIQLPGGDAGVIRVEGHETKALAFSSDVT 457 L P+++S+R++ + D + +Q+P D V +T A + Sbjct: 659 LRLPSVASKRFLTTKVDRSVTGLIAQQQCVGPLQVPLADVAVTATSHFDTTGEAVAMGEQ 718 Query: 458 PRYVKADPFEGTKQAVAECWRNIIATGAKPLA-ITDNLNFGNPEKEEIMG-QFVHSVKGI 515 P D + VAE N++A L + + N+ K G + +V+ + Sbjct: 719 PIKALIDAAASARMCVAEALMNLVAAKITSLKDVKLSGNWMWAAKHPGEGARLYDAVQAL 778 Query: 516 REACQILDFPIVSG--NVSFYNETNGQSIFP--TPTIAGVGILPDYSLMTRIDSAHEGD- 570 L I G ++S + +G+ + T I+ PD + D D Sbjct: 779 CLGLCELGIAIDGGKDSLSMAMKWDGEVVKAPGTLVISAYAPCPDVTKTVTPDLKANVDG 838 Query: 571 -----LILMIGNDGCHLDCSMYSLECASSNIGPP-PKVDCHLEKNHGFF--VLSMINAKK 622 L + + N L S +L S IG P +D + ++ FF V ++N Sbjct: 839 SKTSLLWIDLANSKMRLGGS--ALAQVYSQIGDDCPDLD-NFDELKKFFSVVQQLLNEGI 895 Query: 623 ITACHDISTGGLIITLAEMTISSAKGMDI-ILPIEIEKDPKPFLFGEDQGRYVVCISPEN 681 I A HDIS GGL++TL EM + G++I + LF E+ G V+ +S + Sbjct: 896 ILAGHDISDGGLLVTLLEMAFAGNVGIEIDLDSPNQNIKLFDILFAEELG-AVLEVSDTD 954 Query: 682 QDLVMSEANNKNIPLRYLGKVSG-----STLSIHN----ILNIPVATLQTKYE 725 + V+ + + Y+GK S + + I ILN ++ L+ ++E Sbjct: 955 LEKVLEIFSEAGVKCEYIGKASAVFGQDAHIKISVNGHLILNEKLSDLREEWE 1007 >gnl|CDD|100029 cd02193, PurL, Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.. Length = 272 Score = 166 bits (422), Expect = 2e-41 Identities = 76/270 (28%), Positives = 115/270 (42%), Gaps = 15/270 (5%) Query: 86 VVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG--ARPVAAMNSLRFGAIHHPKTKHL 143 K+E HNHP+ I+P GAATGVGG +RDI G A+P+A + A H P + Sbjct: 3 EAMKIEEHNHPAAIDPAAGAATGVGGAIRDIAATGIDAKPIALSANWMASAGH-PGEDAI 61 Query: 144 LSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNN-----------NIIVNTFAAGIAKTNAI 192 L V G+A N G+P G+ + A G + + Sbjct: 62 LYDAVKGVAELCNQLGLPIPVGKDRMSMKTRWQEGNEQREMTHPPSLVISAFGRVRDDRH 121 Query: 193 FSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEAC 252 + G L+ +G G +G+GG ++AS + QV DP K EA Sbjct: 122 TLPQLSTEGNALLLIGGGKGHNGLGGTALASVALSYRQLGDKS-AQVRDPAQEKGFYEAM 180 Query: 253 LELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQ 312 L+ ++A D GA GL + E+ G+ G+ +DL + E M E+ L ESQ Sbjct: 181 QALVAAGKLLAWHDRGAGGLLVALAELVFAGHCGVQVDLAALGDDEPDMEPLEIALFESQ 240 Query: 313 ERMLMILNPEKQHKAQEILNKWGLHFSIIG 342 ER ++ + E + +E ++G Sbjct: 241 ERGVIQVRAEDRDAVEEAQYGLADCVHVLG 270 Score = 71.9 bits (176), Expect = 5e-13 Identities = 66/263 (25%), Positives = 105/263 (39%), Gaps = 31/263 (11%) Query: 464 DPFEGTKQAVAECWRNIIATG--AKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQI 521 DP G V R+I ATG AKP+A++ N E + +VKG+ E C Sbjct: 17 DPAAGAATGVGGAIRDIAATGIDAKPIALSANWMASAGHPGEDAILY-DAVKGVAELCNQ 75 Query: 522 LDFPIVSGNVSFYNETNGQSIF--------PTPTIAGVGILPDYSLMTRIDSAHEGDLIL 573 L PI G +T Q P+ I+ G + D T + EG+ +L Sbjct: 76 LGLPIPVGKDRMSMKTRWQEGNEQREMTHPPSLVISAFGRVRDDRH-TLPQLSTEGNALL 134 Query: 574 MI----GNDGCH------LDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKI 623 +I G++G + S L S+ + P EK + +++ A K+ Sbjct: 135 LIGGGKGHNGLGGTALASVALSYRQLGDKSAQVRDP-----AQEKGFYEAMQALVAAGKL 189 Query: 624 TACHDISTGGLIITLAEMTISSAKG----MDIILPIEIEKDPKPFLFGEDQGRYVVCISP 679 A HD GGL++ LAE+ + G + + E + +P E Q R V+ + Sbjct: 190 LAWHDRGAGGLLVALAELVFAGHCGVQVDLAALGDDEPDMEPLEIALFESQERGVIQVRA 249 Query: 680 ENQDLVMSEANNKNIPLRYLGKV 702 E++D V + LG+ Sbjct: 250 EDRDAVEEAQYGLADCVHVLGQA 272 >gnl|CDD|145754 pfam02769, AIRS_C, AIR synthase related protein, C-terminal domain. This family includes Hydrogen expression/formation protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The function of the C-terminal domain of AIR synthase is unclear, but the cleft formed between N and C domains is postulated as a sulphate binding site. Length = 150 Score = 114 bits (288), Expect = 8e-26 Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 9/155 (5%) Query: 201 GLPLVYLGAKTGRDGIGGAS-MASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTD 259 G L+ LG+ G+GG+ + E V +GDP L+ L L Sbjct: 3 GDVLILLGS----SGLGGSGLSLVRKGLEE----DGAVPLGDPLLEPTLIYVVLLLAALG 54 Query: 260 AVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMIL 319 V A D+ GL + EM +G +DLDKVP +E + EM+ SE+Q R L+++ Sbjct: 55 LVKAAHDITGGGLAGALAEMAPASGVGAEIDLDKVPIFDELLLPLEMLFSENQGRGLVVV 114 Query: 320 NPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIH 354 PE+ IL + GL ++IG T ++ Sbjct: 115 VPEEAEAVLAILEEEGLPAAVIGEVTAGGGLELVV 149 Score = 88.6 bits (220), Expect = 5e-18 Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 7/140 (5%) Query: 568 EGDLILMIGNDGCHLDCSMYSL-ECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITAC 626 GD+++++G+ G S SL G P D LE + VL + + A Sbjct: 2 PGDVLILLGSSGLG--GSGLSLVRKGLEEDGAVPLGDPLLEPTLIYVVLLLAALGLVKAA 59 Query: 627 HDISTGGLIITLAEMTISSAKGMDIILP----IEIEKDPKPFLFGEDQGRYVVCISPENQ 682 HDI+ GGL LAEM +S G +I L + P LF E+QGR +V + PE Sbjct: 60 HDITGGGLAGALAEMAPASGVGAEIDLDKVPIFDELLLPLEMLFSENQGRGLVVVVPEEA 119 Query: 683 DLVMSEANNKNIPLRYLGKV 702 + V++ + +P +G+V Sbjct: 120 EAVLAILEEEGLPAAVIGEV 139 >gnl|CDD|100027 cd00396, PurM-like, AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.. Length = 222 Score = 109 bits (275), Expect = 2e-24 Identities = 63/264 (23%), Positives = 98/264 (37%), Gaps = 49/264 (18%) Query: 86 VVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLS 145 + + N P I P+ G VGG + DI MGARP+A + SL L Sbjct: 2 LAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAMGARPIALLASLSLSNGLEVDI---LE 58 Query: 146 GVVAGIAGYSNSFGVPTVGGEVEFLPCYN-NNIIVNTFAAGIAKTNAIFSSKARGIGLPL 204 VV G+A N GVP VGG P + + + FA G+ + + + S G L Sbjct: 59 DVVDGVAEACNQLGVPIVGGHTSVSPGTMGHKLSLAVFAIGVVEKDRVIDSSGARPGDVL 118 Query: 205 VYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAI 264 + G ++A LEL+ V A+ Sbjct: 119 ILTG----------------------------------------VDAVLELVAAGDVHAM 138 Query: 265 QDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAY-----EMMLSESQERMLMIL 319 D+ GL + E+ +G +DL+ +P E E +L S +L+ + Sbjct: 139 HDITDGGLLGTLPELAQASGVGAEIDLEAIPLDEVVRWLCVEHIEEALLFNSSGGLLIAV 198 Query: 320 NPEKQHKAQEILNKWGLHFSIIGI 343 E+ +LN G+ ++IG Sbjct: 199 PAEEADAVLLLLNGNGIDAAVIGR 222 Score = 86.7 bits (215), Expect = 2e-17 Identities = 62/266 (23%), Positives = 105/266 (39%), Gaps = 57/266 (21%) Query: 449 ALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQF 508 +LA S+D + +P+ G + AV +I A GA+P+A+ +L+ N + +I+ Sbjct: 1 SLAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAMGARPIALLASLSLSNGLEVDILEDV 60 Query: 509 VHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHE 568 V G+ EAC L PIV G+ S T G + + +G++ + A Sbjct: 61 ---VDGVAEACNQLGVPIVGGHTSVSPGTMG--HKLSLAVFAIGVVEK-DRVIDSSGARP 114 Query: 569 GDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHD 628 GD++++ G D VL ++ A + A HD Sbjct: 115 GDVLILTGVD----------------------------------AVLELVAAGDVHAMHD 140 Query: 629 ISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKP-------------FLFGEDQGRYVV 675 I+ GGL+ TL E+ + A G+ I++E P L G ++ Sbjct: 141 ITDGGLLGTLPEL--AQASGVGAE--IDLEAIPLDEVVRWLCVEHIEEALLFNSSGGLLI 196 Query: 676 CISPENQDLVMSEANNKNIPLRYLGK 701 + E D V+ N I +G+ Sbjct: 197 AVPAEEADAVLLLLNGNGIDAAVIGR 222 >gnl|CDD|144251 pfam00586, AIRS, AIR synthase related protein, N-terminal domain. This family includes Hydrogen expression/formation protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain. Length = 95 Score = 102 bits (257), Expect = 3e-22 Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 7/99 (7%) Query: 72 GENAGVVDIGGGDCVVF---KMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMN 128 G++A V+ +G G +V + +H H + +PY G AT V G L D+ MGA+P+A ++ Sbjct: 1 GDDAAVIRLGEGPALVVTTDGVVTHVHFAA-DPYDGGATAVAGNLSDLAAMGAKPLAFLD 59 Query: 129 SLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEV 167 L G P+ L +V GIA +N FGVP VGG+ Sbjct: 60 GLALGEGLDPEW---LEEIVRGIAEAANEFGVPLVGGDT 95 Score = 93.7 bits (234), Expect = 2e-19 Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 7/100 (7%) Query: 434 GGDAGVIRVEGHETKALAFSSDVTPRYVK--ADPFEGTKQAVAECWRNIIATGAKPLAIT 491 G DA VIR+ AL ++D +V ADP++G AVA ++ A GAKPLA Sbjct: 1 GDDAAVIRLGEG--PALVVTTDGVVTHVHFAADPYDGGATAVAGNLSDLAAMGAKPLAFL 58 Query: 492 DNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNV 531 D L G E + + V+GI EA P+V G+ Sbjct: 59 DGLALGEGLDPEWLEEI---VRGIAEAANEFGVPLVGGDT 95 >gnl|CDD|32327 COG2144, COG2144, Selenophosphate synthetase-related proteins [General function prediction only]. Length = 324 Score = 75.3 bits (185), Expect = 6e-14 Identities = 63/299 (21%), Positives = 121/299 (40%), Gaps = 40/299 (13%) Query: 414 RRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSD-VTPRYVKADPFE-GTKQ 471 + V E D + I G DA VIRV L ++D + + + ADP+ G Sbjct: 23 KDAVREFLDEFYGAEVILDFGDDAAVIRVGD---GKLLIAADGIWGKLIDADPWWAGYCS 79 Query: 472 AVAECWRNIIATGAKPLAITDNLNFGNPEK-EEIMGQFVHSVKGIREACQILDFPIVSGN 530 + ++ A G +P+ D ++ + ++ EI+ +G+R+ + PIV G Sbjct: 80 VLVNV-NDVAAMGGEPVGAVDAISAKSEDQAREIL-------EGLRKGARKFGVPIVGG- 130 Query: 531 VSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLE 590 T+ + + + G++ + + +A GDL++ +G+ + + L Sbjct: 131 -----HTHPDTPYCVLDVVIGGLIAEEPI-ITSGTAKPGDLLIFVGDLDGKPYPN-FPLN 183 Query: 591 CASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMD 650 ++ + K LE L AK + A D+S GGL+ TL + S G Sbjct: 184 WDTTTMKAKEKFRAQLE-------LLREGAKLVKAGKDVSNGGLLGTLLMLLEKSRVGAG 236 Query: 651 IILPIEIEKDPKPFLFGEDQ-------GRYVVCISPENQDLVMSEANNKNIPLRYLGKV 702 ++++ P P Q +V+ + PE+ + V+ + P +G+V Sbjct: 237 ----VDLDSIPYPADVDFRQWLKRYPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGEV 291 Score = 56.8 bits (137), Expect = 2e-08 Identities = 55/307 (17%), Positives = 112/307 (36%), Gaps = 28/307 (9%) Query: 61 PTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG 120 G VI G++A V+ +G G ++ +P+ V + D+ MG Sbjct: 32 EFYGAEVILDFGDDAAVIRVGDGKLLIAADGIWGKLIDADPWWAGYCSVLVNVNDVAAMG 91 Query: 121 ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN 180 PV A++++ K++ ++ G+ + FGVP VGG Y +++ Sbjct: 92 GEPVGAVDAIS------AKSEDQAREILEGLRKGARKFGVPIVGGHTHPDTPYC---VLD 142 Query: 181 TFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG 240 G+ I +S G L+++G G+ P Sbjct: 143 VVIGGLIAEEPIITSGTAKPGDLLIFVGDLDGK----------------PYPNFPLNWDT 186 Query: 241 DPFTGKCLLEACLELMN--TDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCE 298 K A LEL+ V A +D+ GL + + + + +G +DLD +P Sbjct: 187 TTMKAKEKFRAQLELLREGAKLVKAGKDVSNGGLLGTLLMLLEKSRVGAGVDLDSIP-YP 245 Query: 299 EGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEE 358 + + + ++ ++PE + ++ + G ++IG + + R+ Sbjct: 246 ADVDFRQWLKRYPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGEVIEEPVLRIGDGELV 305 Query: 359 VANLPIK 365 ++ Sbjct: 306 SEVFDLE 312 >gnl|CDD|30657 COG0309, HypE, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]. Length = 339 Score = 67.9 bits (166), Expect = 1e-11 Identities = 70/298 (23%), Positives = 118/298 (39%), Gaps = 34/298 (11%) Query: 72 GENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVG-----GILRDIFTMGARPVAA 126 GE+A ++D+G G + F + I+P +G G D+ GA+P Sbjct: 38 GEDAAIIDLGDGV-LAFTTDPF----VIDPLFFPGGDIGKLAVHGTANDVAVSGAKPRYL 92 Query: 127 MNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGI 186 L + L ++ I + GV V G+ + +P + I++NT GI Sbjct: 93 SVGL---ILPEGLPIEDLERILKSIDEEAEEAGVSIVTGDTKVVPGGKDPIVINTTGIGI 149 Query: 187 AKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAK--KRPTVQVGDPFT 244 + S G ++ TG GI GAS+ + FGE + + Sbjct: 150 IDKEILVSPSGARPGDAVIV----TGTIGIHGASILAHRFGEELETELGSDCAPLAKLV- 204 Query: 245 GKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEE----- 299 K LL E AV A+ D GL + EM +GI+++ +K+P EE Sbjct: 205 -KALLSVVGE-ALAAAVTAMHDATRGGLAGALNEMAEASGVGISIEEEKIPVREEVRGVC 262 Query: 300 ---GMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGL-HFSIIGITTNDKLFRVI 353 G+ E+ ++ ++++ + PE + E L GL +IIG +K + Sbjct: 263 ELLGLDPLELA---NEGKLVIAVPPEHAEEVLEALRSHGLKDAAIIGEVVEEKGGVGL 317 Score = 54.9 bits (132), Expect = 9e-08 Identities = 67/275 (24%), Positives = 104/275 (37%), Gaps = 41/275 (14%) Query: 434 GGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGT---KQAVAECWRNIIATGAKPLAI 490 G DA +I + LAF++D P + F G K AV ++ +GAKP + Sbjct: 38 GEDAAIIDLGDGV---LAFTTD--PFVIDPLFFPGGDIGKLAVHGTANDVAVSGAKPRYL 92 Query: 491 TDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAG 550 + L PE + +K I E + IV+G+ + T G Sbjct: 93 SVGLIL--PEGLP-IEDLERILKSIDEEAEEAGVSIVTGDTKVVPGGKDPIVINT---TG 146 Query: 551 VGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNH 610 +GI+ L A GD +++ G G H + + DC Sbjct: 147 IGIIDKEIL-VSPSGARPGDAVIVTGTIGIHGASILAHRF--GEELETELGSDCAPLAKL 203 Query: 611 GFFVLSM---INAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKPF--- 664 +LS+ A +TA HD + GGL L EM +S G I IE++ P Sbjct: 204 VKALLSVVGEALAAAVTAMHDATRGGLAGALNEMAEASGVG------ISIEEEKIPVREE 257 Query: 665 ------LFGED------QGRYVVCISPENQDLVMS 687 L G D +G+ V+ + PE+ + V+ Sbjct: 258 VRGVCELLGLDPLELANEGKLVIAVPPEHAEEVLE 292 >gnl|CDD|100030 cd02194, ThiL, ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).. Length = 291 Score = 61.0 bits (149), Expect = 1e-09 Identities = 70/300 (23%), Positives = 110/300 (36%), Gaps = 62/300 (20%) Query: 433 PGGDAGVIRVEGHE----TKALA----FSSDVTPRYVKADPFEGTKQAVAECWRN---II 481 G DA V++ G T L F D TP + G K A+A N + Sbjct: 23 IGDDAAVLKPPGGRLVVTTDTLVEGVHFPPDTTPEDI------GWK-ALA---VNLSDLA 72 Query: 482 ATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQS 541 A GA+PL +L EE + +F +G+ EA P+V G+ + Sbjct: 73 AMGARPLGFLLSLGLPPDTDEEWLEEFY---RGLAEAADRYGVPLVGGDT---TSGSELV 126 Query: 542 IFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPK 601 I ++ +G + + R A GDL+ + G G D + L + P + Sbjct: 127 I----SVTALGEVEKGKPLRR-SGAKPGDLLYVTGTLG---D-AAAGLALLLGGLKLPEE 177 Query: 602 VDCHLEKNHGFF-----VLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDII---L 653 + L + H + + TA DIS GL+ L + +S G I L Sbjct: 178 LYEELIERHLRPEPRLELGRALAEGLATAMIDISD-GLLADLGHIAEASGVGAVIDLDKL 236 Query: 654 PIEIE-------KDPKPFLF--GEDQGRY--VVCISPENQDLVMSEANNKNIPLRYLGKV 702 P+ +D GED Y + + PEN + A +P+ +G+V Sbjct: 237 PLSPALRAAELGEDALELALSGGED---YELLFTVPPEN---AEAAAAKLGVPVTVIGRV 290 Score = 41.4 bits (98), Expect = 0.001 Identities = 80/315 (25%), Positives = 121/315 (38%), Gaps = 60/315 (19%) Query: 55 KWLRTLPTTGKHVIQGPGENAGVVDIGGGDCVV----FKMESHNHPSYIEPYQGAATGVG 110 L G V+ G G++A V+ GG VV H P P + Sbjct: 7 DRLFKRLGAGPGVLLGIGDDAAVLKPPGGRLVVTTDTLVEGVHFPPDT-TPEDIGWKALA 65 Query: 111 GILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFL 170 L D+ MGARP+ + SL + + L G+A ++ +GVP VGG+ Sbjct: 66 VNLSDLAAMGARPLGFLLSL---GLPPDTDEEWLEEFYRGLAEAADRYGVPLVGGDT--- 119 Query: 171 PCYNNNIIVNTFAAGIA-KTNAIFSSKARGIGLP--LVYLGAKTGRDGIGGASMA----- 222 + ++++ A G K + S A+ P L+Y+ TG +G A+ Sbjct: 120 -TSGSELVISVTALGEVEKGKPLRRSGAK----PGDLLYV---TGT--LGDAAAGLALLL 169 Query: 223 ------SEEFGENIAK-KRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCS 275 E + E I + RP ++ G+ L E M D I D GL Sbjct: 170 GGLKLPEELYEELIERHLRPEPRLE---LGRALAEGLATAM-ID----ISD----GLLAD 217 Query: 276 AIEMGNQGNLGITLDLDKVP------TCEEGMTAYEMMLS--ESQERMLMILNPEKQHKA 327 + +G +DLDK+P E G A E+ LS E E +L + PE A Sbjct: 218 LGHIAEASGVGAVIDLDKLPLSPALRAAELGEDALELALSGGEDYE-LLFTVPPENAEAA 276 Query: 328 QEILNKWGLHFSIIG 342 L G+ ++IG Sbjct: 277 AAKL---GVPVTVIG 288 >gnl|CDD|100037 cd06061, PurM-like1, AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.. Length = 298 Score = 59.5 bits (145), Expect = 4e-09 Identities = 76/308 (24%), Positives = 123/308 (39%), Gaps = 48/308 (15%) Query: 57 LRTLPTTGKHVIQGP--GENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILR 114 L+ L V+ GP GE+A VVD GG VV P V Sbjct: 15 LKNLGADRDEVLVGPGGGEDAAVVDFGGKVLVV-----STDPITGAGKDAGWLAVHIAAN 69 Query: 115 DIFTMGARPVAAMNSLRFGAIHHPKTKH-LLSGVVAGIAGYSNSFGVPTVGGEVEFLPCY 173 DI T GARP + +L P T L ++ I + GV VGG E P Sbjct: 70 DIATSGARPRWLLVTLLL----PPGTDEEELKAIMREINEAAKELGVSIVGGHTEVTPGV 125 Query: 174 NNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKK 233 II T A G + + + + G +V T GI G ++ + +F E + K+ Sbjct: 126 TRPIISVT-AIGKGEKDKLVTPSGAKPGDDIVM----TKGAGIEGTAILANDFEEELKKR 180 Query: 234 RPTVQVGDPFTGKCLLEAC--LELMNT--DAVIAIQD----MGAA---GLTCSAIEMGNQ 282 + + L EA ++ +A+IA + M A G+ + E+ Sbjct: 181 ---------LSEEELREAAKLFYKISVVKEALIAAEAGVTAMHDATEGGILGALWEVAEA 231 Query: 283 GNLGITLDLDKVPTCEE--------GMTAYEMMLSESQERMLMILNPEKQHKAQEILNKW 334 +G+ ++ DK+P +E G+ ++ S + +L+ + PEK + + L + Sbjct: 232 SGVGLRIEKDKIPIRQETKEICEALGIDPLRLISSGT---LLITVPPEKGDELVDALEEA 288 Query: 335 GLHFSIIG 342 G+ S+IG Sbjct: 289 GIPASVIG 296 Score = 51.1 bits (123), Expect = 1e-06 Identities = 54/232 (23%), Positives = 85/232 (36%), Gaps = 39/232 (16%) Query: 434 GGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDN 493 G DA V+ G K L S+D + + AV +I +GA+P + Sbjct: 32 GEDAAVVDFGG---KVLVVSTDP----ITGAGKDAGWLAVHIAANDIATSGARPRWLLVT 84 Query: 494 LNF--GNPEKE--EIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIA 549 L G E+E IM + I EA + L IV G+ P ++ Sbjct: 85 LLLPPGTDEEELKAIMRE-------INEAAKELGVSIVGGHTEVTPGVT----RPIISVT 133 Query: 550 GVGILPDYSLMTRIDSAHEGDLILM---IGNDGCHLDCSMYSLECASSNIGPPPKVDCHL 606 +G L A GD I+M G +G + + + E + L Sbjct: 134 AIGKGEKDKL-VTPSGAKPGDDIVMTKGAGIEGTAILANDFEEEL-KKRLSEE-----EL 186 Query: 607 EKNHGFFV-LSMINAKKI------TACHDISTGGLIITLAEMTISSAKGMDI 651 + F +S++ I TA HD + GG++ L E+ +S G+ I Sbjct: 187 REAAKLFYKISVVKEALIAAEAGVTAMHDATEGGILGALWEVAEASGVGLRI 238 >gnl|CDD|30956 COG0611, ThiL, Thiamine monophosphate kinase [Coenzyme metabolism]. Length = 317 Score = 56.8 bits (137), Expect = 2e-08 Identities = 73/315 (23%), Positives = 122/315 (38%), Gaps = 47/315 (14%) Query: 65 KHVIQGPGENAGVVDIGGGDCVVFK----MESHNHPSYIEPYQGAATGVGGILRDIFTMG 120 + V+ G G++A +VD G +V +E + P + P + L D+ MG Sbjct: 19 EDVVLGIGDDAALVDAPEGQRLVVTTDMLVEGTHFPPDMTPEDLGWKALAVNLSDLAAMG 78 Query: 121 ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN 180 ARP A + SL + + L + GI + +GV +GG+ + ++ Sbjct: 79 ARPKAFLLSL---GLPPDLDEEWLEALADGIFEAAKKYGVKLIGGDTNR-----GPLSIS 130 Query: 181 TFAAGIAKTN-AIFSSKARGIGLPLVYLGAKTGRDGIGGASMA-------SEEFGENIAK 232 A G+ A+ S A+ G + TG G A + E+ E I + Sbjct: 131 VTAIGVLPKGRALLRSGAK-PGDLVAV----TGTLGRSAAGLELLLNVLGPEDEEELIER 185 Query: 233 -KRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDL 291 RPT +V A +L + A + I D GL + +GI +D Sbjct: 186 HLRPTPRVELGL-------ALAKLAS--AAMDISD----GLAADLGHIARASGVGIVIDE 232 Query: 292 DKVP-------TCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGIT 344 D +P +E E LS ++ L+ PE+ +A + L +IIG Sbjct: 233 DLLPLSDAVLEALDELGDPLEWALSGGEDYELVFTVPEENREALLDALR-SLGVTIIGRV 291 Query: 345 TNDKLFRVIHRGEEV 359 T + V+ G+E+ Sbjct: 292 TEGEGVVVLVDGKEL 306 >gnl|CDD|100028 cd02192, PurM-like3, AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.. Length = 283 Score = 52.6 bits (127), Expect = 4e-07 Identities = 52/236 (22%), Positives = 97/236 (41%), Gaps = 36/236 (15%) Query: 433 PGGDAGVIRVEGHETKALAFSSD-VTPRYVKADP-FEGTKQAVAECWRNIIATGAKPLAI 490 G DA I L ++D + P V+ADP + G + +I A G +PLA+ Sbjct: 34 LGDDAAAIPDGD---GYLLLAADGIWPSLVEADPWWAGYCSVLVNV-SDIAAMGGRPLAM 89 Query: 491 TDNLNFGNPEK-EEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIA 549 D L + E +++ +G+R+A + PIV G+ T+ S + ++A Sbjct: 90 VDALWSPSAEAAAQVL-------EGMRDAAEKFGVPIVGGH------THPDSPYNALSVA 136 Query: 550 GVGILPDYSLMTRIDSAHEGDLILMIGN-DGCHLDCSMYSLECASSNIGPPPKVDCHLEK 608 +G + A GD +++ + DG + + + P + + Sbjct: 137 ILGRAR--KDLLISFGAKPGDRLILAIDLDGRVHPSPPPNWDATTMK--SPALLRRQIA- 191 Query: 609 NHGFFVLSMINAKK-ITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKP 663 +L + + + A DIS G+I TL + +S G + I+++ P+P Sbjct: 192 -----LLPELAERGLVHAAKDISNPGIIGTLGMLLEASGVGAE----IDLDAIPRP 238 Score = 46.1 bits (110), Expect = 3e-05 Identities = 54/237 (22%), Positives = 88/237 (37%), Gaps = 38/237 (16%) Query: 67 VIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIE--PYQGAATGVGGILRDIFTMGARPV 124 V G++A + G G ++ + PS +E P+ V + DI MG RP+ Sbjct: 30 VAADLGDDAAAIPDGDGY-LLLAADGI-WPSLVEADPWWAGYCSVLVNVSDIAAMGGRPL 87 Query: 125 AAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAA 184 A +++L P + V+ G+ + FGVP VGG YN ++ Sbjct: 88 AMVDAL-----WSPSAEAAAQ-VLEGMRDAAEKFGVPIVGGHTHPDSPYNA---LSVAIL 138 Query: 185 GIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFT 244 G A+ + + S A+ G L+ GR N D T Sbjct: 139 GRARKDLLISFGAK-PGDRLILAIDLDGRVH--------PSPPPNW----------DATT 179 Query: 245 GKC--LLEACLELMNT----DAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVP 295 K LL + L+ V A +D+ G+ + + +G +DLD +P Sbjct: 180 MKSPALLRRQIALLPELAERGLVHAAKDISNPGIIGTLGMLLEASGVGAEIDLDAIP 236 >gnl|CDD|30499 COG0150, PurM, Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]. Length = 345 Score = 50.2 bits (120), Expect = 2e-06 Identities = 50/265 (18%), Positives = 93/265 (35%), Gaps = 52/265 (19%) Query: 473 VAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVS 532 VA C +++ GA+PL D L G + E+ Q VKGI E C+ +V G Sbjct: 85 VAMCVNDLVVQGAEPLFFLDYLATGKLD-PEVAAQI---VKGIAEGCKQAGCALVGG--- 137 Query: 533 FYNETNGQSIFPTPTIAG--------VGILPDYSLMTRIDSAHEGDLILMIGNDGCH--- 581 ET + P G VG++ ++ EGD+I+ + + G H Sbjct: 138 ---ET---AEMPGMYRGGDYDLAGFAVGVVEKDEIIDGSKVK-EGDVIIGLASSGLHSNG 190 Query: 582 -------LDCSMYSLECASSNIGPPPKVDCHLEKNHGFF--VLSMINAKKITACHDISTG 632 ++ S + + LE + VL++I + I+ G Sbjct: 191 YSLVRKIIEESGLDYDDELPEELGKTLGEELLEPTRIYVKPVLALIKEGDVKGMAHITGG 250 Query: 633 GLIITLAEMTISSAKGMDIILPIEIEKDPKPFLFGEDQGR---------------YVVCI 677 G + L + +G+ ++ P F + + G V+ + Sbjct: 251 GFVENLPRVL---PEGLGAVIDKPSWPPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIV 307 Query: 678 SPENQDLVMSEANNKNIPLRYLGKV 702 E+ + ++ + +G+V Sbjct: 308 PEEDAEKALALLKEQGETAYVIGRV 332 Score = 38.6 bits (90), Expect = 0.005 Identities = 69/358 (19%), Positives = 115/358 (32%), Gaps = 96/358 (26%) Query: 62 TTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAAT-GVGGILR------ 114 T V+ G G AG+ D+G Y +P + T GVG L Sbjct: 30 TRRPEVMGGLGGFAGLFDLGQA--------------YYKPVLVSGTDGVGTKLLLAEDAG 75 Query: 115 ---------------DIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFG 159 D+ GA P+ ++ L G + ++ G+ G G Sbjct: 76 KHDTIGIDLVAMCVNDLVVQGAEPLFFLDYLATGKLDPEVAAQIVKGIAEG----CKQAG 131 Query: 160 VPTVGGEVEFLP-CYNNNII-VNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTG----- 212 VGGE +P Y + FA G+ + + I G ++ L + +G Sbjct: 132 CALVGGETAEMPGMYRGGDYDLAGFAVGVVEKDEIIDGSKVKEGDVIIGLAS-SGLHSNG 190 Query: 213 ---------RDGIGGASMASEEFGENIAKK--RPTVQVGDPFTGKCLLEACLELMNTDAV 261 G+ EE G+ + ++ PT + ++ L L+ V Sbjct: 191 YSLVRKIIEESGLDYDDELPEELGKTLGEELLEPT---------RIYVKPVLALIKEGDV 241 Query: 262 IAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPT-------CEEGMTAYEMMLSESQER 314 + + G + + +G LG +D P + G E M R Sbjct: 242 KGMAHITGGGFVENLPRVLPEG-LGAVIDKPSWPPPPIFKWLQKAGNVEREEMY-----R 295 Query: 315 -------MLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANLPIK 365 M++I+ E KA +L + G +IG RV EV + + Sbjct: 296 TFNMGVGMVLIVPEEDAEKALALLKEQGETAYVIG--------RVEAGEGEVVGVKLN 345 >gnl|CDD|100031 cd02195, SelD, Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.. Length = 287 Score = 42.5 bits (101), Expect = 4e-04 Identities = 71/314 (22%), Positives = 108/314 (34%), Gaps = 102/314 (32%) Query: 67 VIQGPGENAGVVDIGGGDCVV-----FKMESHNHPSYIE-PY-QG--AATGVGGILRDIF 117 V G G++A V + GG +V F P ++ PY G AA L DI+ Sbjct: 36 VGLGTGDDAAVYRLPGGLALVQTTDFF-------PPIVDDPYLFGRIAAANA---LSDIY 85 Query: 118 TMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGG------EVEFLP 171 MGA+P++A+ + + +L ++AG G VGG E ++ Sbjct: 86 AMGAKPLSALAIVTLPRKLPALQEEVLREILAGGKDKLREAGAVLVGGHTIEGPEPKY-- 143 Query: 172 CYNNNIIVNTFAA-GIAKTNAIFSSKARGIGLPLVYLGAKTGRD--------GIG---GA 219 + G+ N I + GAK G D G G A Sbjct: 144 ---------GLSVTGLVHPNKILRNS-----------GAKPG-DVLILTKPLGTGILFAA 182 Query: 220 SMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELM---NTDAVIAIQDMGAA------ 270 MA GE ++A LE M N A ++ GA Sbjct: 183 EMAGLARGE-------------------DIDAALESMARLNRAAAELLRKYGAHACTDVT 223 Query: 271 --GLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQ 328 GL +EM + +DLDK+P + T+ ++ + + PE Sbjct: 224 GFGLLGHLLEMARASGVSAEIDLDKLPLLQ---TSGGLLAA---------VPPEDAAALL 271 Query: 329 EILNKWGLHFSIIG 342 +L G +IIG Sbjct: 272 ALLKAGGPPAAIIG 285 Score = 31.7 bits (73), Expect = 0.77 Identities = 69/291 (23%), Positives = 110/291 (37%), Gaps = 64/291 (21%) Query: 433 PGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITD 492 G DA V R+ AL ++D P V DP+ + A A +I A GAKPL+ Sbjct: 40 TGDDAAVYRL--PGGLALVQTTDFFPPIV-DDPYLFGRIAAANALSDIYAMGAKPLSALA 96 Query: 493 NLNFGNPEKEEIMGQFV--HSVKGIREACQILDFPIVSGNVSFYNETNGQSIF-PTPTIA 549 + P K + + V + G ++ + +V G G +I P P Sbjct: 97 IVTL--PRKLPALQEEVLREILAGGKDKLREAGAVLV-G---------GHTIEGPEPKYG 144 Query: 550 GV--GILPDYSLMTRIDSAHEGD-LIL-------------MIG-NDGCHLDCSMYSLECA 592 G++ ++ A GD LIL M G G +D ++ S+ A Sbjct: 145 LSVTGLVHPNKILRN-SGAKPGDVLILTKPLGTGILFAAEMAGLARGEDIDAALESM--A 201 Query: 593 SSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTG-GLIITLAEMTISSAKGMDI 651 N + L + +G AC D+ TG GL+ L EM +S Sbjct: 202 RLN-----RAAAELLRKYG-----------AHACTDV-TGFGLLGHLLEMARASG----- 239 Query: 652 ILPIEIEKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKV 702 + EI+ D P L + G + + PE+ +++ P +G+V Sbjct: 240 -VSAEIDLDKLPLL--QTSGGLLAAVPPEDAAALLALLKAGGPPAAIIGEV 287 >gnl|CDD|32156 COG1973, HypE, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]. Length = 449 Score = 40.3 bits (94), Expect = 0.002 Identities = 68/340 (20%), Positives = 124/340 (36%), Gaps = 49/340 (14%) Query: 54 KKWLRTLPTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGIL 113 +K TG V ++AGVV I VV H+ S P+ L Sbjct: 93 EKLAELAGKTGAVVSPEELDDAGVVRIENDYIVVAIDGIHSRLSEF-PFLAGFHVTRAAL 151 Query: 114 RDIFTMGARPVAAMNSLRFGAIHHPKTKHL--------LSGVVAGIAGYSNSFGVPTVGG 165 RD++ MGARPVA ++ + HL L AG+ S + GVP + G Sbjct: 152 RDVYVMGARPVALISDI-----------HLADDGDVGKLFDFTAGVTAVSEAVGVPLLAG 200 Query: 166 EVEFLP---CYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMA 222 + + ++ A GI+K+ +A + L+ GA GG ++A Sbjct: 201 STLRIGGDMVLGDRLVGAVGAIGISKSELTPRRRAEPGDVILMTEGA-------GGGTIA 253 Query: 223 SEEFGENIAKK-RPTVQVGDPFTGKCLLEACLELMNTD---AVIAIQDMGAAGLTCSAIE 278 + + T+ V + AC ++ + V ++ D+ G+ A+E Sbjct: 254 TTAIYHGMHDVVEETLNVDF-------IRACEAIVRSGLLSDVHSMTDVTNGGIRGDALE 306 Query: 279 MGNQGNLGITLDLDKV-----PTCEEGMTAYEM-MLSESQERMLMILNPEKQHKAQEILN 332 + + + D +KV P + + + L S + +++I + ++ L Sbjct: 307 ISKTAGVSLVFDEEKVRSLINPKVLKMLEELNIDPLGVSIDSLMIIAPEDVADLVKKALR 366 Query: 333 KWGLHFSIIGITTNDKLFRVIHRGEEVANLPIKALSDEAP 372 G+ +G ++ G E +K E+ Sbjct: 367 GAGVRAEEVGRVEEGGQGVILVDGGE--ERELKPRFRESA 404 Score = 34.5 bits (79), Expect = 0.096 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 10/145 (6%) Query: 436 DAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLN 495 DAGV+R+E + + D + PF R++ GA+P+A+ +++ Sbjct: 113 DAGVVRIE---NDYIVVAIDGIHSRLSEFPFLAGFHVTRAALRDVYVMGARPVALISDIH 169 Query: 496 FGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVG-IL 554 + + +G+ G+ + + P+++G+ G + + VG I Sbjct: 170 LAD---DGDVGKLFDFTAGVTAVSEAVGVPLLAGSTL---RIGGDMVLGDRLVGAVGAIG 223 Query: 555 PDYSLMTRIDSAHEGDLILMIGNDG 579 S +T A GD+ILM G Sbjct: 224 ISKSELTPRRRAEPGDVILMTEGAG 248 >gnl|CDD|100036 cd02691, PurM-like2, AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.. Length = 346 Score = 39.7 bits (93), Expect = 0.003 Identities = 75/350 (21%), Positives = 125/350 (35%), Gaps = 70/350 (20%) Query: 63 TGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGAR 122 TG+ I ++AGV VV H+ S P+ LRD+ MGAR Sbjct: 27 TGEVSIVAQDDDAGVDAADVEYIVVAIDGIHSRLSDF-PFLAGFHATRAALRDVMVMGAR 85 Query: 123 PVAAMNSLRFGAIHHPKTKHL--------LSGVVAGIAGYSNSFGVPTVGGEVEFLPCYN 174 PVA ++ + HL L AG+ S + GVP V G L Sbjct: 86 PVALLSDI-----------HLADDGDVGKLFDFTAGVTAVSEATGVPLVAGST--LRIGG 132 Query: 175 NNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTG-----RDGIGGASMASEEFGEN 229 + ++ + G+ A+ SK P A+ G +G GG ++ + Sbjct: 133 DMVLGDRLVGGVG---AVGRSK----SDPSRRKNAEPGDLILMTEGAGGGTITTTA---- 181 Query: 230 IAKKRP-----TVQVGDPFTGKCLLEACLELMNT---DAVIAIQDMGAAGLTCSAIEMGN 281 I P T+ V ++AC L ++ V ++ D+ G+ A+E+ Sbjct: 182 IYHGMPDVVEETLNVDF-------IKACEALRDSGLVSKVHSMTDVTNGGIRGDALEISK 234 Query: 282 QGNLGITLDLDKVPTCEEGMTAYEMM-------LSESQERMLMILNPEKQHKAQEILNKW 334 + + D +KV + +M+ L S + +++I E L + Sbjct: 235 TAGVSLVFDEEKVRSLINP-KVLKMLEELGIDPLGVSLDSLMIIAPEEDAVDIIRTLREA 293 Query: 335 GLHFSIIGITTNDKLFRVIHRGE---------EVANLPIKALSDEAPEYD 375 G+ +G + ++ GE E A PIK + E D Sbjct: 294 GVRADEVGRVEEGRGVPLVVTGEGRELKPAFRESAYTPIKKVVGEYSPGD 343 >gnl|CDD|100032 cd02196, PurM, PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.. Length = 297 Score = 36.7 bits (86), Expect = 0.022 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 22/117 (18%) Query: 473 VAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVS 532 VA C +I+ GA+PL D + G + E+ + VKGI E C+ ++ G Sbjct: 50 VAMCVNDILCQGAEPLFFLDYIATGKLD-PEVAAEI---VKGIAEGCRQAGCALLGG--- 102 Query: 533 FYNETNGQSIFP---TPT---IAG--VGILPDYSLMTRIDSAHEGDLILMIGNDGCH 581 ET + P +AG VG++ ++ GD+++ + + G H Sbjct: 103 ---ET---AEMPGVYAEGEYDLAGFAVGVVEKDKIIDG-SKIKPGDVLIGLPSSGLH 152 Score = 28.2 bits (64), Expect = 8.7 Identities = 10/28 (35%), Positives = 16/28 (57%) Query: 315 MLMILNPEKQHKAQEILNKWGLHFSIIG 342 M++I++ E + EIL K G +IG Sbjct: 267 MVLIVSEEDADEVLEILEKLGEKAYVIG 294 >gnl|CDD|100033 cd02197, HypE, HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.. Length = 293 Score = 36.3 bits (85), Expect = 0.032 Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 37/190 (19%) Query: 484 GAKPLAITDNL----NFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNG 539 GAKPL ++ F + E I VK + EA + IV+G+ + Sbjct: 74 GAKPLYLSLGFILEEGFPLEDLERI-------VKSMAEAAREAGVKIVTGDTKVVPKGKA 126 Query: 540 QSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILM---IGNDGCHLDCSMYSLECASSNI 596 IF T G+G++P ++ + GD I++ IG+ G + + L Sbjct: 127 DGIFINTT--GIGVIPR-GVIISPSNIRPGDKIIVSGTIGDHGAAILAAREGLG-----F 178 Query: 597 GPPPKVDC----HLEKNHGFFVLSMINAK-KITACHDISTGGLIITLAEMTISSAKGMDI 651 + DC L V +++ A I A D + GGL L E+ +S G++I Sbjct: 179 ETDIESDCAPLNGL-------VEALLEAGPGIHAMRDPTRGGLAAVLNEIARASGVGIEI 231 Query: 652 I---LPIEIE 658 +P+ E Sbjct: 232 EEEAIPVREE 241 Score = 29.0 bits (66), Expect = 5.4 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%) Query: 278 EMGNQGNLGITLDLDKVPTCEEGMTAYEMM----LSESQE-RMLMILNPEKQHKAQEILN 332 E+ +GI ++ + +P EE A EM+ L + E + + I+ PE + E L Sbjct: 220 EIARASGVGIEIEEEAIPVREEVRGACEMLGLDPLYLANEGKFVAIVPPEDAEEVLEALR 279 Query: 333 K--WGLHFSIIG 342 G +IIG Sbjct: 280 SHPLGKEAAIIG 291 >gnl|CDD|35458 KOG0237, KOG0237, KOG0237, Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]. Length = 788 Score = 34.1 bits (78), Expect = 0.13 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 21/117 (17%) Query: 473 VAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVS 532 VA +II GA+PL D G + + Q VKGI E C+ +V G + Sbjct: 519 VAMNVNDIIVQGAEPLFFLDYFATGKLDV-SVAEQV---VKGIAEGCRQAGCALVGGETA 574 Query: 533 ----FYNE----TNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCH 581 Y G + VG + ++ +++ GD++L + + G H Sbjct: 575 EMPGMYAPGEYDLAGFA---------VGAVERTDILPKLNEIVAGDVLLGLPSSGVH 622 >gnl|CDD|32221 COG2038, CobT, NaMN:DMB phosphoribosyltransferase [Coenzyme metabolism]. Length = 347 Score = 31.0 bits (70), Expect = 1.1 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 14/98 (14%) Query: 179 VNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQ 238 V AAG A N + + +P + L + D G +M+ EE I Sbjct: 88 VINRAAGGAAINVLAAGAGAKPKVPDIGLDGRPTGDIAEGPAMSEEEAEAAIEA------ 141 Query: 239 VGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSA 276 GK L N D ++ I + G T +A Sbjct: 142 ------GKEL--GKELAKNGDDLLIIGESGPGNTTTAA 171 >gnl|CDD|35479 KOG0258, KOG0258, KOG0258, Alanine aminotransferase [Amino acid transport and metabolism]. Length = 475 Score = 30.6 bits (69), Expect = 1.5 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 9/75 (12%) Query: 139 KTKHLLSGVVAGIAGYSNSFGVPTVGGEV-EFL------PCYNNNIIVNTFAAGIAKT-- 189 + K +L+ + YS+S GVP V V EF+ P +I + T A+ ++ Sbjct: 94 RAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSIL 153 Query: 190 NAIFSSKARGIGLPL 204 + + + K G+ +P+ Sbjct: 154 SLLIAGKKTGVLIPI 168 >gnl|CDD|33337 COG3535, COG3535, Uncharacterized conserved protein [Function unknown]. Length = 357 Score = 30.6 bits (69), Expect = 1.7 Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Query: 240 GDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEE 299 GDP+ GK + ++ V+ + ++ + MG + ++K+P +E Sbjct: 26 GDPYIGKLMALRAMKEGGPIKVLDVDEIAEDDFVATVGMMGAP-----IVGIEKLPNGDE 80 Query: 300 GMTAYEMM 307 + A+E++ Sbjct: 81 AIRAFEVL 88 >gnl|CDD|37985 KOG2774, KOG2774, KOG2774, NAD dependent epimerase [General function prediction only]. Length = 366 Score = 30.0 bits (67), Expect = 2.7 Identities = 9/24 (37%), Positives = 16/24 (66%) Query: 395 DEDCTKSLLKLLSSPNLSSRRWVY 418 D DC S+++LL++ + S +R Y Sbjct: 256 DTDCMASVIQLLAADSQSLKRRTY 279 >gnl|CDD|31053 COG0709, SelD, Selenophosphate synthase [Amino acid transport and metabolism]. Length = 346 Score = 29.5 bits (66), Expect = 3.5 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%) Query: 72 GENAGVVDIGGGDCVV----FKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAM 127 G++A V D+G G ++ F M P +P+ + D+F MG +P+ A+ Sbjct: 49 GDDAAVYDLGNGHSIISTTDFFM-----PIVDDPFDFGRIAATNAISDVFAMGGKPIMAI 103 Query: 128 NSLRF 132 L F Sbjct: 104 AILGF 108 >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 Score = 29.6 bits (67), Expect = 3.5 Identities = 11/35 (31%), Positives = 19/35 (54%) Query: 504 IMGQFVHSVKGIREACQILDFPIVSGNVSFYNETN 538 I GQ SV+GI C+ L+ PI + + ++ + Sbjct: 60 IFGQPCSSVEGIAPLCRGLNIPIFAEDRRGCSQLD 94 >gnl|CDD|145564 pfam02491, FtsA, Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains. The FtsA protein contains two structurally related actin-like ATPase domains which are also structurally related to the ATPase domains of HSP70 (see PF00012). Length = 163 Score = 29.1 bits (66), Expect = 4.7 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 12/44 (27%) Query: 77 VVDIGGG--DCVVFKMESHNHPSYIEPYQGAATGVGG--ILRDI 116 ++DIG G D + K S + S I GVGG I DI Sbjct: 3 LIDIGSGKTDIAIAKDGSLGYISVI--------GVGGGHITDDI 38 >gnl|CDD|132919 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. E1-PDHc is an alpha2beta2 dimer-of-heterodimers having two active sites lying between PYR and PP domains of separate subunits, the PYR domains are arranged on the beta subunit, the PP domains on the alpha subunits. PDHc catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate during the breakdown of branched chain amino acids. Length = 167 Score = 29.0 bits (66), Expect = 5.4 Identities = 9/18 (50%), Positives = 13/18 (72%) Query: 656 EIEKDPKPFLFGEDQGRY 673 E+E+DP+ + GED G Y Sbjct: 10 EMERDPRVVVLGEDVGDY 27 >gnl|CDD|145819 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel domain. Length = 516 Score = 28.7 bits (65), Expect = 5.7 Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 10/49 (20%) Query: 97 SYIEPYQGAATGVGGILRDIFTM-------GARPVAAMNSLRFGAIHHP 138 S I G ++GV L+ G R A L + HP Sbjct: 45 SPIRGTGGVSSGVVPFLKVFDDTARYVNQGGKRRGAVAVYLE---VWHP 90 >gnl|CDD|119321 cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.. Length = 263 Score = 28.5 bits (65), Expect = 6.0 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 13/64 (20%) Query: 114 RDIFTMGARPVAAMNSLRFGAIHHPKTK---HLLSGVVAGIAG-----YSNSFGVPTVGG 165 R ++ +G P AA R I+ + K ++LSG++AG+AG S PT G Sbjct: 143 RYLYAVGGNPEAA----RLSGINVRRVKILAYVLSGLLAGLAGILLAARLGS-AQPTAGN 197 Query: 166 EVEF 169 E Sbjct: 198 GYEL 201 >gnl|CDD|58169 cd03522, MoeA_like, MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.. Length = 312 Score = 28.6 bits (64), Expect = 7.4 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 10/71 (14%) Query: 209 AKTGRDGIGGASMASEEFGENIAKKR-------PTVQVGDPFTGKCLLEA---CLELMNT 258 G++ + A + + E+ A R +++ +P G+ L A L ++ Sbjct: 36 LAAGKEHVYVARLEPGDVHEDEAAARLAAALAGDGLRLSEPAEGRVNLFAERAGLLKVDV 95 Query: 259 DAVIAIQDMGA 269 +A+ A+ + A Sbjct: 96 EALDALNAIDA 106 >gnl|CDD|63857 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.. Length = 200 Score = 28.4 bits (63), Expect = 7.6 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 364 IKALSDEAPEYDRAWCEPITIPP------SNPQLLCSDEDCTKSLLKLLSSPNLSSRRWV 417 + AL+D Y P+ P S Q + S ++ + L KL+ SPNL + W+ Sbjct: 66 VAALADALKRYLLDLPNPVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWL 125 Query: 418 YEQY 421 QY Sbjct: 126 TLQY 129 >gnl|CDD|29149 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.. Length = 445 Score = 28.2 bits (63), Expect = 8.3 Identities = 11/29 (37%), Positives = 12/29 (41%) Query: 365 KALSDEAPEYDRAWCEPITIPPSNPQLLC 393 D P YD EP +PP P LL Sbjct: 111 DPTVDFVPNYDGQEVEPEVLPPIFPNLLV 139 >gnl|CDD|177066 CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit; Validated. Length = 327 Score = 28.2 bits (63), Expect = 8.6 Identities = 9/18 (50%), Positives = 13/18 (72%) Query: 656 EIEKDPKPFLFGEDQGRY 673 E+ +DP+ F+ GED G Y Sbjct: 17 EMARDPRVFVIGEDVGHY 34 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.318 0.136 0.407 Gapped Lambda K H 0.267 0.0601 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 9,023,065 Number of extensions: 489466 Number of successful extensions: 1210 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1145 Number of HSP's successfully gapped: 69 Length of query: 737 Length of database: 6,263,737 Length adjustment: 101 Effective length of query: 636 Effective length of database: 4,081,228 Effective search space: 2595661008 Effective search space used: 2595661008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 61 (27.6 bits)