RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780970|ref|YP_003065383.1|
phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter
asiaticus str. psy62]
         (737 letters)



>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural
           genomics, JCSG, PSI, protein structure initiative; 2.15A
           {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1
           d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A*
           2hry_A*
          Length = 615

 Score =  437 bits (1125), Expect = e-123
 Identities = 206/664 (31%), Positives = 311/664 (46%), Gaps = 69/664 (10%)

Query: 19  DECDQIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTLPTTGKHVIQGPGENAGVV 78
              + +   L R+PT  E+   S MW+EHC Y  +KK++R LP TG         NAGVV
Sbjct: 16  RYLNILKEKLGREPTFVELQAFSVMWSEHCGYSHTKKYIRRLPKTG------FEGNAGVV 69

Query: 79  DIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHP 138
           ++     V FK+ESHNHPS IEPY GAATGVGGI+RD+  MGARP A  +SL        
Sbjct: 70  NLDDYYSVAFKIESHNHPSAIEPYNGAATGVGGIIRDVLAMGARPTAIFDSLHMS----- 124

Query: 139 KTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKAR 198
               ++ G++ GIA Y NS GVPTVGGE+     Y +N +VN  AAG+ + + +  SKA 
Sbjct: 125 ---RIIDGIIEGIADYGNSIGVPTVGGELRISSLYAHNPLVNVLAAGVVRNDMLVDSKAS 181

Query: 199 GIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNT 258
             G  +V  G  TGRDGI GAS ASE+   + A K   +QVGDPF  K L+EA LE++  
Sbjct: 182 RPGQVIVIFGGATGRDGIHGASFASEDLTGDKATKLS-IQVGDPFAEKMLIEAFLEMVEE 240

Query: 259 DAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMI 318
             V   QD+GA G+  +  E+  +GNLG  + LD+VP  E  M  +E+++SESQERM ++
Sbjct: 241 GLVEGAQDLGAGGVLSATSELVAKGNLGAIVHLDRVPLREPDMEPWEILISESQERMAVV 300

Query: 319 LNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANLPIKALSDEAPEYDRAW 378
            +P+K  +  EI  K  L   ++     + ++RV++R + V  +P++ L++ APE D   
Sbjct: 301 TSPQKASRILEIARKHLLFGDVVAEVIEEPVYRVMYRNDLVMEVPVQLLAN-APEEDIVE 359

Query: 379 CEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQYDTMIQSNSIQLPGGDAG 438
             P  IP                             R V+EQYD M+ ++   +     G
Sbjct: 360 YTPGKIPEFKRVEFEEVN-----------------AREVFEQYDHMVGTD--TVVPPGFG 400

Query: 439 VIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGN 498
              +        +  +         D + GT  AV E  R  ++ GA+PLAIT+ +N+G+
Sbjct: 401 AAVMRIKRDGGYSLVTHSRADLALQDTYWGTLIAVLESVRKTLSVGAEPLAITNCVNYGD 460

Query: 499 PEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYS 558
           P+ + +       +  ++ AC+    P+ SGN S YN   G+ I PT  +  +G +    
Sbjct: 461 PDVDPV--GLSAMMTALKNACEFSGVPVASGNASLYNTYQGKPIPPTLVVGMLGKVNPQK 518

Query: 559 LMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMI 618
           +        +   +  +G +   L+                       EK     +  + 
Sbjct: 519 VAKP-----KPSKVFAVGWNDFELE----------------------REKELWRAIRKLS 551

Query: 619 NAKKITACHDISTGGLIITLAEMTISSAK-GMDIILPIEIEKDPKPFLFGEDQGRYVVCI 677
                     +S+  L+      T       +++ LP          +F E      V +
Sbjct: 552 EE----GAFILSSSQLLTRTHVETFREYGLKIEVKLPEVRPAHQMVLVFSERTPVVDVPV 607

Query: 678 SPEN 681
               
Sbjct: 608 KEIG 611


>1t3t_A Phosphoribosylformylglycinamidine synthase; PURL, FGAM synthetase,
           PURS, PURQ, formyl glycinamide, ligase; HET: CYG ADP;
           1.90A {Salmonella typhimurium} SCOP: a.5.10.1 c.23.16.1
           d.284.1.2 d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1
          Length = 1303

 Score =  430 bits (1107), Expect = e-121
 Identities = 159/777 (20%), Positives = 286/777 (36%), Gaps = 104/777 (13%)

Query: 15  GLTKDECDQIIHI---LKRQPTLTEIGIISAMWNEHCSYKSS----------------KK 55
            L +DE D +      L R P   E+ + +   +EHC +K                  K 
Sbjct: 189 ALAEDEIDYLQEAFTKLGRNPNDIELYMFAQANSEHCRHKIFNADWIIDGKPQPKSLFKM 248

Query: 56  WLRTLPTTGKHVIQGPGENAGVVDIGGGD------------------CVVFKMESHNHPS 97
              T  TT  +V+    +NA V++                        ++ K+E+HNHP+
Sbjct: 249 IKNTFETTPDYVLSAYKDNAAVMEGSAVGRYFADHNTGRYDFHQEPAHILMKVETHNHPT 308

Query: 98  YIEPYQGAATGVGGILRD--IFTMGARPVAAMNSLRFGAIHHPKTK-------------- 141
            I P+ GAATG GG +RD      GA+P A +       +  P  +              
Sbjct: 309 AISPWPGAATGSGGEIRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEEDFGKPERIV 368

Query: 142 ---HLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNN-----------IIVNTFAAGIA 187
               +++    G A ++N FG P + G         N+            I+     G  
Sbjct: 369 TALDIMTEGPLGGAAFNNEFGRPALTGYFRTYEEKVNSHNGEELRGYHKPIMLAGGIGNI 428

Query: 188 KTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGEN-IAKKRPTVQVGDPFTGK 246
           + + +       +G  L+ LG      G+GG + +S   G++       +VQ  +P   +
Sbjct: 429 RADHVQK-GEIVVGAKLIVLGGPAMNIGLGGGAASSMASGQSDADLDFASVQRDNPEMER 487

Query: 247 CLLEAC---LELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTA 303
              E      +L + + ++ I D+GA GL+ +  E+ + G  G   +L  + + E GM+ 
Sbjct: 488 RCQEVIDRCWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELRDILSDEPGMSP 547

Query: 304 YEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVI--HRGEEVAN 361
            E+  +ESQER ++ +  ++     E+  +    +++IG  T ++   +   H   +  +
Sbjct: 548 LEIWCNESQERYVLAVAADQLPLFDELCKRERAPYAVIGDATEEQHLSLHDNHFDNQPID 607

Query: 362 LPIKALSDEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQY 421
           LP+  L  + P+  R              L  +D     ++ ++L  P ++ + ++    
Sbjct: 608 LPLDVLLGKTPKMTRDVQTL---KAKGDALNRADITIADAVKRVLHLPTVAEKTFLVTIG 664

Query: 422 DTMIQSNS--------IQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAV 473
           D  +             Q+P  D  V           A S          D     + AV
Sbjct: 665 DRTVTGMVARDQMVGPWQVPVADCAVTTASLDSYYGEAMSIGERAPVALLDFAASARLAV 724

Query: 474 AECWRNIIATGAK-----PLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVS 528
            E   NI AT         L+       G+P ++  +   V +V    E C  L   I  
Sbjct: 725 GEALTNIAATQIGDIKRIKLSANWMAAAGHPGEDAGLYDAVKAVGE--ELCPQLGLTIPV 782

Query: 529 GNVSFY--------NETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIG--ND 578
           G  S          NE    +   +  I+    + D         + E + +L+I     
Sbjct: 783 GKDSMSMKTRWQEGNEQREMTSPLSLVISAFARVEDVRHTLTPQLSTEDNALLLIDLGKG 842

Query: 579 GCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITL 638
              L  +  +         P    D    K     + +++ A+K+ A HD S GGL++TL
Sbjct: 843 HNALGATALAQVYRQLGDKPADVRDVAQLKGFYDAMQALVAARKLLAWHDRSDGGLLVTL 902

Query: 639 AEMTISSAKGMDIILPIEIEKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIP 695
           AEM  +   G+ + +   +  D    LF E+ G   + +  E++D V +      + 
Sbjct: 903 AEMAFAGHCGVQVDIA-ALGDDHLAALFNEELGGV-IQVRAEDRDAVEALLAQYGLA 957


>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD,
           ATP-binding, nucleotide-binding, selenium, transferase;
           HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
          Length = 394

 Score =  117 bits (292), Expect = 1e-26
 Identities = 46/326 (14%), Positives = 94/326 (28%), Gaps = 25/326 (7%)

Query: 70  GPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNS 129
           G G +  V+ +  G   + +   + +P   +PY         +L D++ MG      M  
Sbjct: 67  GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLM 126

Query: 130 --LRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIA 187
                  +   +   ++  ++ G    +   G    GG+    P      +  T      
Sbjct: 127 LLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTV---CQ 183

Query: 188 KTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPF---- 243
               I    A    + ++     T         +   E    I        V   +    
Sbjct: 184 PNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAM 243

Query: 244 -TGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMT 302
                L      LM+T    A  D+   G+   A  +  Q    ++  +  +P   +   
Sbjct: 244 MNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAA 303

Query: 303 AYEMMLSESQER----------MLMILNPEKQHKAQEILNK----WGLHFSIIG-ITTND 347
             +   +               +L+ L  E+  +    +       G    IIG +   +
Sbjct: 304 VSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGN 363

Query: 348 KLFRVIHRGEEVANLPIKALSDEAPE 373
           +  R+I +   +   P  A  +  P 
Sbjct: 364 RTARIIDKPRIIEVAPQVATQNVNPT 389



 Score = 80.8 bits (198), Expect = 1e-15
 Identities = 40/314 (12%), Positives = 90/314 (28%), Gaps = 25/314 (7%)

Query: 402 LLKLLSSPNLSSRRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYV 461
           L KLL S   +  +   +    ++    I   G D  VI +  H   +L  ++D     V
Sbjct: 40  LQKLLESLQENHFQEDEQFLGAVMPRLGI---GMDTCVIPL-RHGGLSLVQTTDYIYPIV 95

Query: 462 KADPFEGTKQAVAECWRNIIATGAKPL--AITDNLNFGNPEKEEIMGQFVHSVKGIREAC 519
             DP+   + A A    ++ A G       +            E        ++G ++A 
Sbjct: 96  -DDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAA 154

Query: 520 QILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHE----GDLILMI 575
           +     +  G            +  T       I+PD ++   +    +       + + 
Sbjct: 155 EEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVH 214

Query: 576 GNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLI 635
                    +   L     ++    +               +++     A  DI+  G++
Sbjct: 215 QWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGIL 274

Query: 636 ITLAEMTISSAKGMDII---LPI--------EIEKDPKPFLFGED---QGRYVVCISPEN 681
                +       +  +   LP+        +   +    + G      G  ++C+  E 
Sbjct: 275 GHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQ 334

Query: 682 QDLVMSEANNKNIP 695
                +E  +    
Sbjct: 335 AARFCAEIKSPKYG 348


>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold,
           beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio
           vulgaris subsp} PDB: 2z1t_A*
          Length = 343

 Score =  111 bits (278), Expect = 6e-25
 Identities = 55/309 (17%), Positives = 106/309 (34%), Gaps = 24/309 (7%)

Query: 65  KHVIQGPGENAGVVDIGGGDCVVFKMESHN-HPSYIEPYQGAATGVGGILRDIFTMGARP 123
            + I G   +A  +D+ G   +    +S+   P +          V G + D+  +GARP
Sbjct: 32  DNPILGTLNDAARLDLTGP--LAMSTDSYTVDPIFFPGGDIGTLAVHGTVNDVSMLGARP 89

Query: 124 VAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYN-NNIIVNTF 182
                      +       +L  VVA +   +   GV  V G+ + +P    + + +NT 
Sbjct: 90  RYLSCGF---ILEEGLDMDILERVVASMGKAAREAGVFIVTGDTKVVPRGACDKMFINTT 146

Query: 183 AAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDP 242
             G    +   S      G  ++     +G  G  G ++ S+  G N A    +      
Sbjct: 147 GIGEILVDPAPSGDRARPGDAILI----SGSMGDHGLTILSQRQGLNFAADVCSDSASLN 202

Query: 243 FTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMT 302
              + L+           +  ++D    GL  +  E+  Q      +    VP  E    
Sbjct: 203 RVVEKLVLEV------GDIHVLRDPTRGGLATTLNEIAGQSQAVCHVLETAVPVRESVRN 256

Query: 303 AYEMMLSE-----SQERMLMILNPEKQHKAQEILNKW--GLHFSIIGITTNDKLFRVIHR 355
               +  +     ++ +++ IL  E+   A  +L +   G H + IG   +         
Sbjct: 257 GCSFLGLDPLYLANEGKLICILPEERAEAALAVLREGPHGEHAARIGSVKSVGELGAARA 316

Query: 356 GEEVANLPI 364
           G+ V    +
Sbjct: 317 GQVVMETAL 325



 Score = 89.9 bits (222), Expect = 2e-18
 Identities = 49/290 (16%), Positives = 91/290 (31%), Gaps = 30/290 (10%)

Query: 427 SNSIQLPGGDAGVIRVEGHETKALAFSSD---VTPRYVKADPFEGTKQAVAECWRNIIAT 483
            N I     DA  + + G     LA S+D   V P +      +    AV     ++   
Sbjct: 32  DNPILGTLNDAARLDLTGP----LAMSTDSYTVDPIF--FPGGDIGTLAVHGTVNDVSML 85

Query: 484 GAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIF 543
           GA+P  ++           +I+ +    V  + +A +     IV+G+           +F
Sbjct: 86  GARPRYLSCGFILEEGLDMDILERV---VASMGKAAREAGVFIVTGDTKVVPRGACDKMF 142

Query: 544 PTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVD 603
              T  G             D A  GD IL+ G+ G H      ++      +     V 
Sbjct: 143 INTTGIGEI---LVDPAPSGDRARPGDAILISGSMGDHG----LTILSQRQGLNFAADVC 195

Query: 604 CHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDI-----ILPIEIE 658
                 +      ++    I    D + GGL  TL E+   S     +      +   + 
Sbjct: 196 SDSASLNRVVEKLVLEVGDIHVLRDPTRGGLATTLNEIAGQSQAVCHVLETAVPVRESVR 255

Query: 659 KDPKPF----LFGEDQGRYVVCISPENQDLVMS--EANNKNIPLRYLGKV 702
                     L+  ++G+ +  +  E  +  ++             +G V
Sbjct: 256 NGCSFLGLDPLYLANEGKLICILPEERAEAALAVLREGPHGEHAARIGSV 305


>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center
           for structural genomics, J protein structure initiative,
           PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus
           flagellatus}
          Length = 319

 Score =  110 bits (275), Expect = 1e-24
 Identities = 41/313 (13%), Positives = 103/313 (32%), Gaps = 15/313 (4%)

Query: 58  RTLPTTGKHVIQGPGENAGVVDIGGGDCVVFK----MESHNHPSYIEPYQGAATGVGGIL 113
           R         + G G++A ++    G  +       + + +    I+P+      +   +
Sbjct: 11  RYFRRAHPSAVLGVGDDAALIQPSPGMELAVSADMLVANTHFYPNIDPWLIGWKSLAVNI 70

Query: 114 RDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCY 173
            D+  MGA+P  A  +           +  +S   AG    +  F +  +GG+       
Sbjct: 71  SDMAAMGAQPRWATLT----IALPEADEDWISKFAAGFFACAAQFDIALIGGD-----TT 121

Query: 174 NNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKK 233
              + ++    G     A    ++       +++    G   +  A++       +    
Sbjct: 122 RGPLTISVQIMGETPPGASL-LRSTARADDDIWVSGPLGDAALALAAIQGRYPLSDTELA 180

Query: 234 RPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDK 293
                +  P     L +A   L ++   I+   +   G      ++G +  L      + 
Sbjct: 181 ACGKALHQPQPRVVLGQALRGLAHSALDISDGLLADLGHILEHSQVGAEVWLKAIPKSEV 240

Query: 294 VPTCEEGMTAYEMMLSESQE-RMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRV 352
           V    + +   +M+LS   +  +    + + + +  +I  +  L  ++IG  T+ +   +
Sbjct: 241 VSAHSQEVAIQKMILSGGDDYELCFTASTQHRQQIADIGRQLSLDMAVIGRITDTQQLVI 300

Query: 353 IHRGEEVANLPIK 365
               +    L   
Sbjct: 301 HGLDDAPLTLKEH 313



 Score = 85.3 bits (210), Expect = 5e-17
 Identities = 55/315 (17%), Positives = 105/315 (33%), Gaps = 32/315 (10%)

Query: 419 EQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDV----TPRYVKADPFEGTKQAVA 474
           ++Y      +++   G DA +I+        LA S+D+    T  Y   DP+    +++A
Sbjct: 10  QRYFRRAHPSAVLGVGDDAALIQPS--PGMELAVSADMLVANTHFYPNIDPWLIGWKSLA 67

Query: 475 ECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFY 534
               ++ A GA+P   T  +     +++ I         G        D  ++ G+ +  
Sbjct: 68  VNISDMAAMGAQPRWATLTIALPEADEDWIS----KFAAGFFACAAQFDIALIGGDTTRG 123

Query: 535 NETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASS 594
             T    I        +G  P  + + R  +A   D I + G  G               
Sbjct: 124 PLTISVQI--------MGETPPGASLLR-STARADDDIWVSGPLGDAALALAAIQGRYPL 174

Query: 595 NIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILP 654
           +          L +     VL         +  DIS  GL+  L  +   S  G ++ L 
Sbjct: 175 SDTELAACGKALHQPQPRVVLGQALRGLAHSALDIS-DGLLADLGHILEHSQVGAEVWLK 233

Query: 655 -----------IEIEKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKV- 702
                       +     K  L G D        S +++  +       ++ +  +G++ 
Sbjct: 234 AIPKSEVVSAHSQEVAIQKMILSGGDDYELCFTASTQHRQQIADIGRQLSLDMAVIGRIT 293

Query: 703 SGSTLSIHNILNIPV 717
               L IH + + P+
Sbjct: 294 DTQQLVIHGLDDAPL 308


>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase
           maturation, ATPase, transferase; 1.55A {Thermococcus
           kodakarensis KOD1} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
          Length = 338

 Score =  110 bits (274), Expect = 2e-24
 Identities = 55/317 (17%), Positives = 109/317 (34%), Gaps = 21/317 (6%)

Query: 61  PTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG 120
             +   +     ++   +  G    V         P +          V G + D+  MG
Sbjct: 30  LKSAGGIGLDALDDGATIPFGDKHIVFTIDGHTVKPLFFPGGDIGRLAVSGTVNDLAVMG 89

Query: 121 ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN 180
           A P+A  NS+    I       +L  V+  +   +    VP V G+ + +       ++ 
Sbjct: 90  AEPIALANSM---IIGEGLDMEVLKRVLKSMDETAREVPVPIVTGDTKVVEDKIEMFVIT 146

Query: 181 TFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG 240
                     +   +K        V +    G  GI   S       E   K        
Sbjct: 147 AGIGIAEHPVSDAGAKVGDA----VLVSGTIGDHGIALMSHREGIAFETELKSDVAPI-- 200

Query: 241 DPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEG 300
                  +++A  E +  + + A++D   AGL+ +  E+  + N+GI +    +P   E 
Sbjct: 201 -----WDVVKAVAETIGWENIHAMKDPTRAGLSNALNEIARKSNVGILVREADIPIRPEV 255

Query: 301 MTAYEMML-----SESQERMLMILNPEKQHKAQEILNKW--GLHFSIIGITTNDKLFRVI 353
             A EM+        ++ +++M++  E   +A E + K   G + +IIG    D   +V+
Sbjct: 256 RAASEMLGISPYDVANEGKVVMVVAREYAEEALEAMRKTEKGRNAAIIGEVIADYRGKVL 315

Query: 354 HRGEEVANLPIKALSDE 370
                     ++    +
Sbjct: 316 LETGIGGKRFMEPPEGD 332



 Score = 78.9 bits (193), Expect = 4e-15
 Identities = 52/301 (17%), Positives = 100/301 (33%), Gaps = 27/301 (8%)

Query: 414 RRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSD-VTPRYVKADPFEGTKQA 472
           R  + +                D   I       K + F+ D  T + +     +  + A
Sbjct: 21  RDVILKTLTLKSAGGIGLDALDDGATIPFGD---KHIVFTIDGHTVKPLFFPGGDIGRLA 77

Query: 473 VAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVS 532
           V+    ++   GA+P+A+ +++  G     E++ + +   K + E  + +  PIV+G+  
Sbjct: 78  VSGTVNDLAVMGAEPIALANSMIIGEGLDMEVLKRVL---KSMDETAREVPVPIVTGDTK 134

Query: 533 FYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECA 592
                +   +F      G+   P          A  GD +L+ G  G H    M   E  
Sbjct: 135 VVE--DKIEMFVITAGIGIAEHPVSD-----AGAKVGDAVLVSGTIGDHGIALMSHREGI 187

Query: 593 SSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDII 652
           +        V    +      V   I  + I A  D +  GL   L E+   S  G+ + 
Sbjct: 188 AFETELKSDVAPIWDVVK--AVAETIGWENIHAMKDPTRAGLSNALNEIARKSNVGILVR 245

Query: 653 LP---------IEIEKDPKPFLFGEDQGRYVVCISPENQDLVMS--EANNKNIPLRYLGK 701
                         E          ++G+ V+ ++ E  +  +       K      +G+
Sbjct: 246 EADIPIRPEVRAASEMLGISPYDVANEGKVVMVVAREYAEEALEAMRKTEKGRNAAIIGE 305

Query: 702 V 702
           V
Sbjct: 306 V 306


>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY
           crystallography, structural genomics, BSGI; 2.00A
           {Escherichia coli O157} PDB: 2i6r_A
          Length = 334

 Score =  101 bits (251), Expect = 8e-22
 Identities = 49/315 (15%), Positives = 102/315 (32%), Gaps = 29/315 (9%)

Query: 65  KHVIQGPGENAGVVDIG----GGDCVVFKMESHN-HPSYIEPYQGAATGVGGILRDIFTM 119
            +      E+   +D+      GD + F  +S+   P +          + G   D+   
Sbjct: 26  ANPWLAEQEDQARLDLAQLVAEGDRLAFSTDSYVIDPLFFPGGNIGKLAICGTANDVAVS 85

Query: 120 GARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYN-NNII 178
           GA P           +        L  VV  +A  + + G+  V G+ + +     + + 
Sbjct: 86  GAIPRYLSCGF---ILEEGLPMETLKAVVTSMAETARTAGIAIVTGDTKVVQRGAADKLF 142

Query: 179 VNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQ 238
           +NT   G   TN  + ++    G  L+     +G  G  GA++ +      +  +  +  
Sbjct: 143 INTAGMGAIPTNIHWGAQTLTAGDILLV----SGTLGDHGATILNLREQLGLDGELVSDC 198

Query: 239 VGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCE 298
                    L      L +   V A++D    G+     E       GI +    +P   
Sbjct: 199 -------AVLTPLIQTLRDIPGVKALRDATRGGVNAVVHEFAAACGCGIEISESALPVKP 251

Query: 299 EGMTAYE-----MMLSESQERMLMILNPEKQHKAQEIL--NKWGLHFSIIGITTNDKLFR 351
                 E      +   ++ ++++ +      +    L  +  G   ++IG     K  R
Sbjct: 252 AVRGVCELLGLDALNFANEGKLVIAVERNAAEQVLAALHSHPLGKDAALIGEVVERKGVR 311

Query: 352 VIHR--GEEVANLPI 364
           +      +   +LP 
Sbjct: 312 LAGLYGVKRTLDLPH 326


>1cli_A Protein (phosphoribosyl-aminoimidazole synthetase); AIR synthetase,
           PURM, purine biosynthesis, trifunctional enzyme, PURL;
           2.50A {Escherichia coli} SCOP: d.79.4.1 d.139.1.1
          Length = 345

 Score = 96.4 bits (239), Expect = 2e-20
 Identities = 59/319 (18%), Positives = 98/319 (30%), Gaps = 35/319 (10%)

Query: 62  TTGKHVIQGPGENAGVVDIGGG----------DCVVFKMESHNHPSYIEPYQGAATGVGG 111
           T    V+ G G    +  +             D V  K+         +        V  
Sbjct: 33  TRRPEVMGGLGGFGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGI--DLVAM 90

Query: 112 ILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLP 171
            + D+   GA P+  ++                S V++GIA      G   VGGE   +P
Sbjct: 91  CVNDLVVQGAEPLFFLDY----YATGKLDVDTASAVISGIAEGCLQSGCSLVGGETAEMP 146

Query: 172 --CYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGEN 229
              +  +  V  F  G+ + + I        G  L+ LG+        G S+  +    +
Sbjct: 147 GMYHGEDYDVAGFCVGVVEKSEIIDGSKVSDGDVLIALGSSGPHS--NGYSLVRKILEVS 204

Query: 230 IAKKRPTVQVGDPFTGKCLLEACL------ELMNTDAVIAIQDMGAAGLTCSAIEMGNQG 283
               + T   G P     L    +      EL+    V AI  +   G   +   +    
Sbjct: 205 GCDPQTTELDGKPLADHLLAPTRIYVKSVLELIEKVDVHAIAHLTGGGFWENIPRVLPDN 264

Query: 284 NLGIT-LDLDKVPT-----CEEGMTAYEMMLSESQE--RMLMILNPEKQHKAQEILNKWG 335
              +      + P         G   +  M         M++ L   +  KA  +LN  G
Sbjct: 265 TQAVIDESSWQWPEVFNWLQTAGNVEHHEMYRTFNCGVGMIIALPAPEVDKALALLNANG 324

Query: 336 LHFSIIG-ITTNDKLFRVI 353
            +   IG I  +D   RV+
Sbjct: 325 ENAWKIGIIKASDSEQRVV 343



 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 41/306 (13%), Positives = 92/306 (30%), Gaps = 38/306 (12%)

Query: 427 SNSIQLPGGDAGVIRV-EGHETKALAFSSD-----VTPRYVKADPFEGTKQAVAECWRNI 480
              +   GG   +  + + +    L   +D     +                VA C  ++
Sbjct: 36  PEVMGGLGGFGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDL 95

Query: 481 IATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQ 540
           +  GA+PL   D    G  + +         + GI E C      +V G  +        
Sbjct: 96  VVQGAEPLFFLDYYATGKLDVD----TASAVISGIAEGCLQSGCSLVGGETAEMPGMYHG 151

Query: 541 SIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPP 600
             +       VG++    ++       +GD+++ +G+ G H   + YSL      +    
Sbjct: 152 EDY-DVAGFCVGVVEKSEIIDG-SKVSDGDVLIALGSSGPH--SNGYSLVRKILEVSGCD 207

Query: 601 KVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMT-ISSAKGMDIILPIEI-- 657
                L+       L       + +  ++     +  +A +T     + +  +LP     
Sbjct: 208 PQTTELDGKPLADHLLAPTRIYVKSVLELIEKVDVHAIAHLTGGGFWENIPRVLPDNTQA 267

Query: 658 ------EKDPKPFLFGEDQG---------------RYVVCISPENQDLVMSEANNKNIPL 696
                  + P+ F + +  G                 ++ +     D  ++  N      
Sbjct: 268 VIDESSWQWPEVFNWLQTAGNVEHHEMYRTFNCGVGMIIALPAPEVDKALALLNANGENA 327

Query: 697 RYLGKV 702
             +G +
Sbjct: 328 WKIGII 333


>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase,
           structural genomics, NPPSFA; 1.98A {Aquifex aeolicus}
           PDB: 2yye_A* 2zod_A 2zau_A
          Length = 345

 Score = 94.3 bits (233), Expect = 8e-20
 Identities = 58/353 (16%), Positives = 106/353 (30%), Gaps = 52/353 (14%)

Query: 36  EIGIISAMWNEHCSYKSSKKWLRTL-----PTTGKHVIQGPGENAGVVDIGGGDCVVFKM 90
            + ++  + +  C+ K     L+ +       T +  +   G++AGV +  G   V    
Sbjct: 10  MVELLKLVRSSGCAAKVGPGDLQEILKGFNIYTDESTLVSIGDDAGVYEHNGIIWVY--T 67

Query: 91  ESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAG 150
                P   +PY   A      L D++ MG  PV A+    F   +      +   V+ G
Sbjct: 68  VDIITPVVNDPYLWGAISTANALSDVYAMGGIPVNALAISCF--NNCELDIEIFREVIRG 125

Query: 151 IAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAK 210
                       +GG        +         AGI       +     +G  L+     
Sbjct: 126 ALDKLREAKTVLLGGHT----IDDKEPKFGLSVAGICPEGKYITQSGAQVGQLLILTKPI 181

Query: 211 TGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAA 270
                I G      +  +        + + D      L              A  D+   
Sbjct: 182 GTGILIKGLKEGILKEEDINEAIENMLALNDKARNLMLSLDA---------TACTDVTGF 232

Query: 271 GLTCSAIEMGNQGNLGITLDLDKVPTCE----------------EGMTAYEMMLSESQER 314
           GL   A  +    N+G  +  +KVP  +                E +   +  L  + + 
Sbjct: 233 GLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVKKKIYPKGAIENLNFVKNYLKSNLDN 292

Query: 315 --------------MLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVI 353
                         +L  +N EK  K  E   +  +++ IIG T  + +  V+
Sbjct: 293 WKLILLSDPVTSGGLLFTINKEKLEKIDETAKELEVNYWIIGETIAENVLEVL 345



 Score = 73.1 bits (178), Expect = 2e-13
 Identities = 46/309 (14%), Positives = 88/309 (28%), Gaps = 51/309 (16%)

Query: 428 NSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKP 487
           +++   G DAGV    G       ++ D+    V  DP+     + A    ++ A G  P
Sbjct: 45  STLVSIGDDAGVYEHNG---IIWVYTVDIITPVV-NDPYLWGAISTANALSDVYAMGGIP 100

Query: 488 LAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPT 547
           +       F     E  +  F   ++G  +  +     ++ G+     E       P   
Sbjct: 101 VNALAISCF--NNCELDIEIFREVIRGALDKLREAKTVLLGGHTIDDKE-------PKFG 151

Query: 548 IAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLE 607
           ++  GI P+   +T+  +     LIL        L   +        +I    +    L 
Sbjct: 152 LSVAGICPEGKYITQSGAQVGQLLILTKPIGTGILIKGLKEGILKEEDINEAIENMLALN 211

Query: 608 KNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKP---- 663
                 +LS+        C D++  GL+     +  +S  G  I                
Sbjct: 212 DKARNLMLSLDATA----CTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVK 267

Query: 664 ------------------FLFGEDQ------------GRYVVCISPENQDLVMSEANNKN 693
                                  D             G  +  I+ E  + +   A    
Sbjct: 268 KKIYPKGAIENLNFVKNYLKSNLDNWKLILLSDPVTSGGLLFTINKEKLEKIDETAKELE 327

Query: 694 IPLRYLGKV 702
           +    +G+ 
Sbjct: 328 VNYWIIGET 336


>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural
           genomics, center for structural genomics of infec
           diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae}
           PDB: 1cli_A
          Length = 349

 Score = 89.0 bits (220), Expect = 4e-18
 Identities = 43/303 (14%), Positives = 91/303 (30%), Gaps = 27/303 (8%)

Query: 62  TTGKHVIQGPGENAGVVDIGGG----------DCVVFKMESHNHPSYIEPYQGAATGVGG 111
           T    V+ G G    + ++             D V  K+         +        V  
Sbjct: 37  TRRPEVMGGLGGFGALCELPTKYKHPVLVSGTDGVGTKLRLALDMKKHDTI--GIDLVAM 94

Query: 112 ILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLP 171
            + D+   GA P+  ++    G +       ++SG+  G      +              
Sbjct: 95  CVNDLIVQGAEPLFFLDYYATGKLDVDTAAEVISGIADGCLQAGCALIGGETAEMPGM-- 152

Query: 172 CYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRD-GIGGASMASEEFGENI 230
               +  V  F  G+ +   I       +G  L+ +G+      G        E    + 
Sbjct: 153 YEGEDYDVAGFCVGVVEKEEIIDGSKVQVGDALIAVGSSGPHSNGYSLVRKILEVSKADK 212

Query: 231 AKKRPTVQVGDPFTG--KCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGIT 288
            ++     +G+      K  +++ L+L+    + AI  +   G   +   +  +G     
Sbjct: 213 NERLAGKTIGEHLLAPTKIYIKSGLKLIAEHDIHAISHITGGGFWENIPRVLPEG-TKAV 271

Query: 289 LDLDKVPTC-------EEGMTAYEMMLSE--SQERMLMILNPEKQHKAQEILNKWGLHFS 339
           +D              E+G      M         +++ L  ++ + A  +L   G    
Sbjct: 272 IDGKSWEWPVIFQWLQEKGNVTTHEMYRTFNCGVGLIIALPKDQANAAVALLQAEGETAW 331

Query: 340 IIG 342
           +IG
Sbjct: 332 VIG 334



 Score = 51.3 bits (122), Expect = 8e-07
 Identities = 41/317 (12%), Positives = 97/317 (30%), Gaps = 59/317 (18%)

Query: 427 SNSIQLPGGDAGVIRV-EGHETKALAFSSDVTPRYVKADPFEGTKQAVAE---------- 475
              +   GG   +  +   ++   L   +D            GTK  +A           
Sbjct: 40  PEVMGGLGGFGALCELPTKYKHPVLVSGTDGV----------GTKLRLALDMKKHDTIGI 89

Query: 476 -----CWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGN 530
                C  ++I  GA+PL   D    G  + +         + GI + C      ++ G 
Sbjct: 90  DLVAMCVNDLIVQGAEPLFFLDYYATGKLDVDTA----AEVISGIADGCLQAGCALIGGE 145

Query: 531 VSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLE 590
            +          +       VG++    ++        GD ++ +G+ G H +      +
Sbjct: 146 TAEMPGMYEGEDYDV-AGFCVGVVEKEEIIDG-SKVQVGDALIAVGSSGPHSNGYSLVRK 203

Query: 591 CASSNIGPPPK-------VDCHLE--KNHGFFVLSMINAKKITACHDISTGGLIITLAEM 641
               +     +        +  L   K +    L +I    I A   I+ GG       +
Sbjct: 204 ILEVSKADKNERLAGKTIGEHLLAPTKIYIKSGLKLIAEHDIHAISHITGGGF---WENI 260

Query: 642 TISSAKGMDIILPIEIEKDPKPFLFGEDQG---------------RYVVCISPENQDLVM 686
                +G   ++  +  + P  F + +++G                 ++ +  +  +  +
Sbjct: 261 PRVLPEGTKAVIDGKSWEWPVIFQWLQEKGNVTTHEMYRTFNCGVGLIIALPKDQANAAV 320

Query: 687 SEANNKNIPLRYLGKVS 703
           +    +      +G+++
Sbjct: 321 ALLQAEGETAWVIGEIA 337


>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo
           purine biosynthesis, AIR synthase family, spine, FGAR
           amidotransferase; 2.31A {Bacillus anthracis}
          Length = 346

 Score = 79.9 bits (196), Expect = 2e-15
 Identities = 54/324 (16%), Positives = 96/324 (29%), Gaps = 37/324 (11%)

Query: 62  TTGKHVIQGPGENAGVVDIGGG-----------DCVVFKMESHNHPSYIEPYQGAATGVG 110
           T  K V+ G G   G+ D+              D V  K+         +     A  + 
Sbjct: 29  TMRKEVLGGLGGFGGMFDLSKFALEEPVLVSGTDGVGTKLMLAFMADKHDTIGIDAVAM- 87

Query: 111 GILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFL 170
             + DI   GA P+  ++ +  G     K ++++ G+  G        G   +GGE   +
Sbjct: 88  -CVNDIVVQGAEPLFFLDYIACGKAEPSKIENIVKGISEGC----RQAGCALIGGETAEM 142

Query: 171 P--CYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGE 228
           P         +  F  GI     I + +    G  L+ L +                   
Sbjct: 143 PGMYSTEEYDLAGFTVGIVDKKKIVTGEKIEAGHVLIGLASSGIHSNGYSLVRKVLLEDG 202

Query: 229 NIAKKRPTVQVGDPFTGKCLLEACLE------LMNTDAVIAIQDMGAAGLTCSAIEMGNQ 282
            ++  R   ++  P   + L    +       L+    V  +  +   G     I     
Sbjct: 203 ELSLDRIYGRLELPLGEELLKPTKIYVKPILELLKNHEVYGMAHITGGGFIE-NIPRMLP 261

Query: 283 GNLGITLDLDKVPTCEEGMTAYEMMLSESQE---------RMLMILNPEKQHKAQEILNK 333
             +G  ++L             E+   E +E          M++ +  E       +L +
Sbjct: 262 EGIGAEIELGSWKIQPIFSLLQEVGKLEEKEMFNIFNMGIGMVVAVKEEDAKDIVRLLEE 321

Query: 334 WGLHFSIIGITTNDKLFRVIHRGE 357
            G    IIG T       V   G 
Sbjct: 322 QGETARIIGRTVQGA--GVTFNGG 343



 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 50/312 (16%), Positives = 99/312 (31%), Gaps = 47/312 (15%)

Query: 427 SNSIQLPGGDAGVIRV--EGHETKALAFSSD-------VTPRYVKADPFEGTKQAVAECW 477
              +   GG  G+  +     E   L   +D       +     K D       AVA C 
Sbjct: 32  KEVLGGLGGFGGMFDLSKFALEEPVLVSGTDGVGTKLMLAFMADKHDTI--GIDAVAMCV 89

Query: 478 RNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNET 537
            +I+  GA+PL   D +  G  E  +I        +G R+A       ++ G  +     
Sbjct: 90  NDIVVQGAEPLFFLDYIACGKAEPSKIENIVKGISEGCRQAG----CALIGGETAEMPGM 145

Query: 538 NGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECAS-SNI 596
                +       VGI+    ++T  +    G +++ + + G H +      +       
Sbjct: 146 YSTEEY-DLAGFTVGIVDKKKIVTG-EKIEAGHVLIGLASSGIHSNGYSLVRKVLLEDGE 203

Query: 597 GPPPKVDCHLEKNHGFFVLS-----------MINAKKITACHDISTGGLIITLAEMTISS 645
               ++   LE   G  +L            ++   ++     I+ GG I  +  M    
Sbjct: 204 LSLDRIYGRLELPLGEELLKPTKIYVKPILELLKNHEVYGMAHITGGGFIENIPRMLP-- 261

Query: 646 AKGMDIILPIEIEKDPKPFLFGEDQG---------------RYVVCISPENQDLVMSEAN 690
            +G+   + +   K    F   ++ G                 VV +  E+   ++    
Sbjct: 262 -EGIGAEIELGSWKIQPIFSLLQEVGKLEEKEMFNIFNMGIGMVVAVKEEDAKDIVRLLE 320

Query: 691 NKNIPLRYLGKV 702
            +    R +G+ 
Sbjct: 321 EQGETARIIGRT 332


>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase;
           1.90A {Thermus thermophilus HB8}
          Length = 311

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 46/305 (15%), Positives = 80/305 (26%), Gaps = 23/305 (7%)

Query: 62  TTGKHVIQGPGENAGVVDIGGGDCVVFK---MESHNHPSYIEPYQGAATGVGGILRDIFT 118
                    PG++AG V   G   ++     +        + P++    GV     D+  
Sbjct: 19  GYPPEAPLPPGDDAGGVWAEGRAWLLKTDGFLYREVALKGMGPFEVGFRGVAATASDLLA 78

Query: 119 MGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNII 178
              RP+     L                +V G A  +   G   +GG+          + 
Sbjct: 79  KMGRPLGFTLGLFLPEDLEEGFVL---ELVRGAAEAAKRLGAFLLGGDTNRGVEVALTVS 135

Query: 179 VNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQ 238
               A       A+               G + GR G    +       E   K R    
Sbjct: 136 GYALAEAPLPRKALPGDLL-------YLAGDRWGRTGAAIRAHYEGRSLEGFPKIREAAF 188

Query: 239 VGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCE 298
              P      L   L      +    + +         +E+       + L  D +    
Sbjct: 189 YPLPRLELLALSGLLRGSLDSSDGLAETLWQLADLGVGVEVEA-----LPLYPDVLAFAG 243

Query: 299 EGMTAYEMMLS--ESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRG 356
               A E++L   E  E  ++++  E     +      GL     G     +   V  RG
Sbjct: 244 SEEAALELVLYGGEEFE-AVLVVPQEGAAAVEARAKAKGLPLFRAGRVVAGE--GVYLRG 300

Query: 357 EEVAN 361
             +  
Sbjct: 301 APLPR 305



 Score = 62.4 bits (150), Expect = 3e-10
 Identities = 50/287 (17%), Positives = 98/287 (34%), Gaps = 20/287 (6%)

Query: 433 PGGDAGVIRVEGHETKALAFSSDV----TPRYVKADPFEGTKQAVAECWRNIIATGAKPL 488
           PG DAG +  EG   +A    +D             PFE   + VA    +++A   +PL
Sbjct: 28  PGDDAGGVWAEG---RAWLLKTDGFLYREVALKGMGPFEVGFRGVAATASDLLAKMGRPL 84

Query: 489 AITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTI 548
             T  L      +E  + + V   +G  EA + L   ++ G+ +   E            
Sbjct: 85  GFTLGLFLPEDLEEGFVLELV---RGAAEAAKRLGAFLLGGDTNRGVEVALTVSGYALAE 141

Query: 549 AGVGILPDYSLMTRIDSAHEGD--LILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHL 606
           A +        +  +     G     +    +G  L+      E A     P P+++  L
Sbjct: 142 APLPRKALPGDLLYLAGDRWGRTGAAIRAHYEGRSLEGFPKIREAA---FYPLPRLEL-L 197

Query: 607 EKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKPFLF 666
             +         +         ++  G+ + +  + +       +      E   +  L+
Sbjct: 198 ALSGLLRGSLDSSDGLAETLWQLADLGVGVEVEALPLYPD---VLAFAGSEEAALELVLY 254

Query: 667 GEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKV-SGSTLSIHNI 712
           G ++   V+ +  E    V + A  K +PL   G+V +G  + +   
Sbjct: 255 GGEEFEAVLVVPQEGAAAVEARAKAKGLPLFRAGRVVAGEGVYLRGA 301


>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta
           proteins, cytoplasm, purine biosynthesis, structural
           genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
          Length = 348

 Score = 71.8 bits (175), Expect = 5e-13
 Identities = 52/330 (15%), Positives = 87/330 (26%), Gaps = 47/330 (14%)

Query: 62  TTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAAT-------------- 107
           T    V+ G G   G+ D+            +  P  I    G  T              
Sbjct: 31  TMRPEVLGGIGGFGGLFDLSA--------LGYRQPVLISGTDGVGTKLKLAFLLDRHDTI 82

Query: 108 ---GVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVG 164
               V   + DI   GA P+  ++ +  G     K   ++ GV  G        G   +G
Sbjct: 83  GIDCVAMCVNDIIVQGAEPLFFLDYIACGKAVPEKIAAIVKGVADGC----VEAGCALIG 138

Query: 165 GEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASE 224
           GE   +P   +    +     +             I      +G  +      G S+   
Sbjct: 139 GETAEMPGMYDEDEYDLAGFAVGVAEKERLITGETIQAGDALVGLPSSGLHSNGYSLVRR 198

Query: 225 EFGENIAKKRPTVQVGDPFTGK--------CLLEACLELMNTDAVIAIQDMGAAGLTCSA 276
              E        +                    +    +     +  +  +   GL  + 
Sbjct: 199 IVFEQAKLSLDEIYEPLDVPLGEELLKPTRIYAKLLRSVRERFTIKGMAHITGGGLIENI 258

Query: 277 IEMGNQG-NLGITLDLDKVP-----TCEEGMTAYEMMLSESQE--RMLMILNPEKQHKAQ 328
             M   G    I L    +        E+G    E M S       +++ ++PE      
Sbjct: 259 PRMLPPGIGARIQLGSWPILPIFDFLREKGSLEEEEMFSVFNMGIGLVLAVSPETAAPLV 318

Query: 329 EILNKWGLHFSIIGITTNDKLFRVIHRGEE 358
           E L++ G    IIG         V   G  
Sbjct: 319 EWLSERGEPAYIIGEVAKGA--GVSFAGGG 346



 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 42/309 (13%), Positives = 93/309 (30%), Gaps = 39/309 (12%)

Query: 427 SNSIQLPGGDAGVIRV--EGHETKALAFSSD-----VTPRYVKADPFEGTKQAVAECWRN 479
              +   GG  G+  +   G+    L   +D     +   ++           VA C  +
Sbjct: 34  PEVLGGIGGFGGLFDLSALGYRQPVLISGTDGVGTKLKLAFLLDRHDTIGIDCVAMCVND 93

Query: 480 IIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNG 539
           II  GA+PL   D +  G         +    VKG+ + C      ++ G  +       
Sbjct: 94  IIVQGAEPLFFLDYIACGKAV----PEKIAAIVKGVADGCVEAGCALIGGETAEMPGMYD 149

Query: 540 QSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIG-- 597
           +  +     A      +  +    ++   GD ++ + + G H +                
Sbjct: 150 EDEYDLAGFAVGVAEKERLI--TGETIQAGDALVGLPSSGLHSNGYSLVRRIVFEQAKLS 207

Query: 598 --------PPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGM 649
                     P  +  L+    +  L     ++ T    ++       +  +      G+
Sbjct: 208 LDEIYEPLDVPLGEELLKPTRIYAKLLRSVRERFT-IKGMAHITGGGLIENIPRMLPPGI 266

Query: 650 DIILPIEIEKDPKPFLFGEDQG---------------RYVVCISPENQDLVMSEANNKNI 694
              + +        F F  ++G                 V+ +SPE    ++   + +  
Sbjct: 267 GARIQLGSWPILPIFDFLREKGSLEEEEMFSVFNMGIGLVLAVSPETAAPLVEWLSERGE 326

Query: 695 PLRYLGKVS 703
           P   +G+V+
Sbjct: 327 PAYIIGEVA 335


>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional
           enzyme, structural genomics consortium,
           nucleotide-binding, purine biosynthesis; 2.10A {Homo
           sapiens}
          Length = 334

 Score = 65.6 bits (159), Expect = 3e-11
 Identities = 46/321 (14%), Positives = 96/321 (29%), Gaps = 50/321 (15%)

Query: 78  VDIGGGDCVVFKMESHNHPSYIEPYQGAAT-GVG---------------GI------LRD 115
           VD+GG    +F +++     + +P   + T GVG               G       + D
Sbjct: 8   VDLGG-FAGLFDLKAAG---FKDPLLASGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVND 63

Query: 116 IFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNN 175
           I   GA P+  ++    G +    T+ +++G+         +          +  P    
Sbjct: 64  ILAQGAEPLFFLDYFSCGKLDLSVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEY 123

Query: 176 NIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGEN--IAKK 233
           ++      A           +   I    V +G  +      G S+  +   ++      
Sbjct: 124 DLAGFAVGAMERDQKLPHLER---ITEGDVVVGIASSGLHSNGFSLVRKIVAKSSLQYSS 180

Query: 234 RPTVQVGDPFTGKCLLEACLE-------LMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLG 286
                 GD   G  LL            ++ +  V A   +   GL  + I       LG
Sbjct: 181 PAPDGCGDQTLGDLLLTPTRIYSHSLLPVLRSGHVKAFAHITGGGLLEN-IPRVLPEKLG 239

Query: 287 ITLDLDKVPTCEEGMTAYEMMLSESQE---------RMLMILNPEKQHKAQEILNKWGLH 337
           + LD              +      +E           +++++ E+  +    + +    
Sbjct: 240 VDLDAQTWRIPRVFSWLQQEGHLSEEEMARTFNCGVGAVLVVSKEQTEQILRGIQQHKEE 299

Query: 338 FSIIG--ITTNDKLFRVIHRG 356
             +IG  +   +   RV  + 
Sbjct: 300 AWVIGSVVARAEGSPRVKVKN 320



 Score = 51.0 bits (121), Expect = 1e-06
 Identities = 34/256 (13%), Positives = 78/256 (30%), Gaps = 30/256 (11%)

Query: 472 AVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNV 531
            VA C  +I+A GA+PL   D  + G  +            K   +A       ++ G  
Sbjct: 56  LVAMCVNDILAQGAEPLFFLDYFSCGKLDLSVTEAVVAGIAKACGKAG----CALLGGET 111

Query: 532 SFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSM----- 586
           +   +      +     A   +  D   +  ++   EGD+++ I + G H +        
Sbjct: 112 AEMPDMYPPGEYDLAGFAVGAMERDQK-LPHLERITEGDVVVGIASSGLHSNGFSLVRKI 170

Query: 587 -----YSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEM 641
                      + +      +   L      +  S++   +       +       L  +
Sbjct: 171 VAKSSLQYSSPAPDGCGDQTLGDLLLTPTRIYSHSLLPVLRSGHVKAFAHITGGGLLENI 230

Query: 642 TISSAKGMDIILPIEIEKDPKPFLFGEDQG---------------RYVVCISPENQDLVM 686
                + + + L  +  + P+ F + + +G                 V+ +S E  + ++
Sbjct: 231 PRVLPEKLGVDLDAQTWRIPRVFSWLQQEGHLSEEEMARTFNCGVGAVLVVSKEQTEQIL 290

Query: 687 SEANNKNIPLRYLGKV 702
                       +G V
Sbjct: 291 RGIQQHKEEAWVIGSV 306


>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold,
           csgid, ATP-binding, nucleotide-BIND purine biosynthesis;
           HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp}
          Length = 350

 Score = 59.3 bits (143), Expect = 3e-09
 Identities = 56/329 (17%), Positives = 95/329 (28%), Gaps = 48/329 (14%)

Query: 62  TTGKHVIQGPGENAGVVDIGGG-------------DCVVFKMESHNHPSYIEPYQGAATG 108
           T  + V+ G G    +  +                D V  K +        +        
Sbjct: 33  TFTQDVLTGLGSFGSLYSLKNIINNYDDPVLVQSIDGVGTKTKVAVM--CGKFENLGYDL 90

Query: 109 VGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVE 168
                 DI  MGA+P+  ++ +    +     +     +V G++      GV  VGGE  
Sbjct: 91  FSAATNDIVVMGAKPITFLDYVAHDKLDPAIMEE----LVKGMSKACAECGVSLVGGETA 146

Query: 169 FLP--CYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEF 226
            +P       I +     GI     I + +    G  +  L +     G+     +    
Sbjct: 147 EMPGVYQAGEIDMVGVITGIVDRKRIINGENIKEGDIVFGLSS----SGLHTNGYSFARK 202

Query: 227 GENIAKKRPTVQVGDPFTGKCLLEACLE------------LMNTDAVIAIQDMGAAGLTC 274
                             GK + +  LE            L N   +  +  +   G   
Sbjct: 203 LFFDVAGNKHTDTYPELEGKTIGDVLLEPHINYTNIIHDFLDNGVDIKGMAHITGGGFIE 262

Query: 275 SAIEMGNQGNLGITLDLDKVPT-------CEEGMTAYEMMLSESQE--RMLMILNPEKQH 325
           +   +  QG LG  +D D   T          G  +   M         M +I + ++  
Sbjct: 263 NIPRVLPQG-LGAQIDKDSFATPAIFKLMQRIGDISEFEMYRSFNMGIGMTIIASQDQFD 321

Query: 326 KAQEILNK-WGLHFSIIGITTNDKLFRVI 353
           K QE+  K        IG  TN     +I
Sbjct: 322 KMQELAKKHTNTKLYQIGKITNSGKVEII 350



 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 40/265 (15%), Positives = 77/265 (29%), Gaps = 41/265 (15%)

Query: 472 AVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNV 531
             +    +I+  GAKP+   D +     +           VKG+ +AC      +V G  
Sbjct: 90  LFSAATNDIVVMGAKPITFLDYVAHDKLDPA----IMEELVKGMSKACAECGVSLVGGET 145

Query: 532 SFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLEC 591
           +                   GI+    ++   ++  EGD++  + + G H +   ++ + 
Sbjct: 146 AEMPGVYQAGEIDM-VGVITGIVDRKRIING-ENIKEGDIVFGLSSSGLHTNGYSFARKL 203

Query: 592 ASSNIGPPPKVDCHLEKNHGFFVLSMI---------------NAKKITACHDISTGGLII 636
                G     D + E         ++               N   I     I+ GG I 
Sbjct: 204 FFDVAGNKHT-DTYPELEGKTIGDVLLEPHINYTNIIHDFLDNGVDIKGMAHITGGGFIE 262

Query: 637 TLAEMTISSAKGMDIILPIEIEKDPKPFLFGEDQG---------------RYVVCISPEN 681
            +  +                   P  F   +  G                  +  S + 
Sbjct: 263 NIPRVLPQGLGAQIDKDSFAT---PAIFKLMQRIGDISEFEMYRSFNMGIGMTIIASQDQ 319

Query: 682 QDLVMSEAN-NKNIPLRYLGKVSGS 705
            D +   A  + N  L  +GK++ S
Sbjct: 320 FDKMQELAKKHTNTKLYQIGKITNS 344


>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure,
           transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus}
           SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A*
           1vqv_A
          Length = 342

 Score = 48.4 bits (114), Expect = 6e-06
 Identities = 41/300 (13%), Positives = 87/300 (29%), Gaps = 44/300 (14%)

Query: 422 DTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVK----ADPFEGTKQAVAECW 477
           D + ++   ++ G D   +       K L  ++DV    V       P     +A++   
Sbjct: 49  DLIKKTLESKVIGDDTAPVEYCS---KKLLLTTDVLNEGVHFLRSYIPEAVGWKAISVNV 105

Query: 478 RNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNET 537
            ++IA G  P     +LN     +   + +F   VK   E  +                 
Sbjct: 106 SDVIANGGLPKWALISLNLPEDLEVSYVERFYIGVKRACEFYK------------CEVVG 153

Query: 538 NGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIG 597
              S      I+   +      + R  +     + +            +  +E       
Sbjct: 154 GNISKSEKIGISVFLVGETERFVGRDGARLGDSVFVSGTLGDSRAGLELLLMEKEEYEPF 213

Query: 598 PPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPI-- 655
               +  HL       +  + + +K        + GL+     +   S   ++I+     
Sbjct: 214 ELALIQRHLRPTA--RIDYVKHIQKYANASMDISDGLVADANHLAQRSGVKIEILSEKLP 271

Query: 656 ----------EIEKDPKPFLF--GEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVS 703
                     +  K+P  +    GED   Y +  +         E  N  + +  +G+V 
Sbjct: 272 LSNELKMYCEKYGKNPIEYALFGGED---YQLLFT------HPKERWNPFLDMTEIGRVE 322



 Score = 41.1 bits (95), Expect = 0.001
 Identities = 35/304 (11%), Positives = 81/304 (26%), Gaps = 36/304 (11%)

Query: 69  QGPGENAGVVDIGGGDCVV---FKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVA 125
           +  G++   V+      ++      E  +      P       +   + D+   G  P  
Sbjct: 58  KVIGDDTAPVEYCSKKLLLTTDVLNEGVHFLRSYIPEAVGWKAISVNVSDVIANGGLPKW 117

Query: 126 AMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAG 185
           A+ SL                   G+      +    VGG +        ++ +      
Sbjct: 118 ALISLNLPEDLEVSYVE---RFYIGVKRACEFYKCEVVGGNISKSEKIGISVFLVGETER 174

Query: 186 IAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTG 245
               +      +  +          +G  G   A +      +   +      +      
Sbjct: 175 FVGRDGARLGDSVFV----------SGTLGDSRAGLELLLMEKEEYEPFELALIQRHLRP 224

Query: 246 KCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEE------ 299
              ++    +             + GL   A  +  +  + I +  +K+P   E      
Sbjct: 225 TARIDYVKHIQK---YANASMDISDGLVADANHLAQRSGVKIEILSEKLPLSNELKMYCE 281

Query: 300 --GMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGE 357
             G    E  L   ++  L+  +P+++           L  + IG     +   V   G+
Sbjct: 282 KYGKNPIEYALFGGEDYQLLFTHPKERWNP-------FLDMTEIGRVEEGE--GVFVDGK 332

Query: 358 EVAN 361
           +V  
Sbjct: 333 KVEP 336


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 41.1 bits (96), Expect = 9e-04
 Identities = 53/285 (18%), Positives = 78/285 (27%), Gaps = 138/285 (48%)

Query: 4   PSPILEILTAHGLTKDECDQIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTLPTT 63
           PSP+L I     LT+++    ++                  N H            LP  
Sbjct: 335 PSPMLSI---SNLTQEQVQDYVNKT----------------NSH------------LPAG 363

Query: 64  GKHV----IQGPGENAGVVDIGGGDCVVFKMESHNHPS--YIEPYQGAATGVGGILRDI- 116
            K V    + G  +N  VV   G             P   Y         G+   LR   
Sbjct: 364 -KQVEISLVNGA-KNL-VV--SG------------PPQSLY---------GLNLTLRKAK 397

Query: 117 -----------FTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGI----AGYS-----N 156
                      F+   R +   N  RF  +  P   HLL      I       +      
Sbjct: 398 APSGLDQSRIPFS--ERKLKFSN--RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453

Query: 157 SFGVP---TVGGEVEFLPCYNNNII-----------VN-----TFAAGIAKTNAI-F--- 193
              +P   T  G    L   + +I            V       F A    T+ + F   
Sbjct: 454 DIQIPVYDTFDGSD--LRVLSGSISERIVDCIIRLPVKWETTTQFKA----THILDFGPG 507

Query: 194 -SSKARGIGLPLVYLGAKTGR--DGIG-----GASM---ASEEFG 227
            +S   G+G  L      T R  DG G       ++     +++G
Sbjct: 508 GAS---GLG-VL------THRNKDGTGVRVIVAGTLDINPDDDYG 542



 Score = 32.2 bits (73), Expect = 0.39
 Identities = 86/551 (15%), Positives = 159/551 (28%), Gaps = 240/551 (43%)

Query: 113 LRDIFTMGARPVAAMNS------------LRFGAIHHPKTKHLLSGVVAGIAGYS----- 155
           L++ F           +             +F         ++ S V     G       
Sbjct: 33  LQEQFNKILPEPTEGFAADDEPTTPAELVGKF-------LGYVSSLVEPSKVGQFDQVLN 85

Query: 156 ---NSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLV-YLGAKT 211
                F       E  +L    N+I  +  AA + + N     K + +   +  Y+ A  
Sbjct: 86  LCLTEF-------ENCYLE--GNDI--HALAAKLLQENDTTLVKTKEL---IKNYITA-- 129

Query: 212 GRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAG 271
                    MA         KK  +           L  A            + + G A 
Sbjct: 130 -------RIMA----KRPFDKKSNSA----------LFRA------------VGE-GNAQ 155

Query: 272 LTCSAIEMGNQGNLGITLDLDKVPTC--E--EGMTAYEMMLSESQERMLMILNPEKQHKA 327
           L   AI  G QGN               E  +    Y +++ +     L+         +
Sbjct: 156 LV--AI-FGGQGN---------TDDYFEELRDLYQTYHVLVGD-----LI-------KFS 191

Query: 328 QEILNKWGLHFSIIGITTN-DKLFRVIHRGEEVANLPIKALSDEAPEYDRAWCEPITIPP 386
            E L+       +I  T + +K+F    +G  +    ++ L + +   D+ +   ++IP 
Sbjct: 192 AETLS------ELIRTTLDAEKVF---TQGLNI----LEWLENPSNTPDKDYL--LSIPI 236

Query: 387 SNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHE 446
           S P L+         +++L               Y  ++               ++ G  
Sbjct: 237 SCP-LIG--------VIQLA-------------HY--VV-------------TAKLLG-- 257

Query: 447 TKALAFSSDVTPRYVKADPFEGT---KQ------AVAEC--WRNIIATGAKPLAITDNLN 495
                     TP  +     +G     Q      A+AE   W +   +  K  AIT  + 
Sbjct: 258 ---------FTPGEL-RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK--AIT--VL 303

Query: 496 FGNPEKEEIMGQFVHSVKGIREACQILDFP-------IVSGNVSFYNETNGQSIFPTP-- 546
           F           F+    G+R  C    +P       I+  ++      N + + P+P  
Sbjct: 304 F-----------FI----GVR--CY-EAYPNTSLPPSILEDSLE-----NNEGV-PSPML 339

Query: 547 TIAGVGILPDYSLMTRIDS--AH--EGD-----LILMIGNDGCHLDC-----SMYSLECA 592
           +I+    L    +   ++   +H   G      L+    N   +L       S+Y L   
Sbjct: 340 SISN---LTQEQVQDYVNKTNSHLPAGKQVEISLV----NGAKNLVVSGPPQSLYGLNLT 392

Query: 593 SSNIGPPPKVD 603
                 P  +D
Sbjct: 393 LRKAKAPSGLD 403



 Score = 31.5 bits (71), Expect = 0.68
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 311  SQERMLMILNPEKQHKA-QEILNKWGLHF------SIIGITTNDKLFRVIHRGEE 358
            SQE+  M ++  K  KA Q++ N+   HF      SI+ I  N+ +   IH G E
Sbjct: 1626 SQEQG-MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679


>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens}
           SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
          Length = 250

 Score = 30.6 bits (69), Expect = 1.3
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 124 VAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNII 178
           VA +N L       PKT+H ++  V  I+  +++    +V G  + +   + + +
Sbjct: 94  VAFLNEL-------PKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSL 141


>3a2s_X Outer membrane protein II; beta barrel, porin, neisseria mening
           cell membrane, cell outer membrane, ION transport,
           membrane transmembrane; HET: SUC LDA; 2.20A {Neisseria
           meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X*
          Length = 355

 Score = 28.8 bits (63), Expect = 3.9
 Identities = 20/177 (11%), Positives = 41/177 (23%), Gaps = 12/177 (6%)

Query: 76  GVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRD------------IFTMGARP 123
           G  D+G G   ++++E     +      G      G+               +   G   
Sbjct: 61  GQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNV 120

Query: 124 VAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFA 183
            A  +      +    T   +      +   S  F   +   +       N+        
Sbjct: 121 NAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTK 180

Query: 184 AGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG 240
           +     +A    +  G         AK          +A      +  K     +V 
Sbjct: 181 SSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVV 237


>2e0g_A Chromosomal replication initiator protein DNAA; domain structure,
           structural genomics, NPPSFA; NMR {Escherichia coli K12}
          Length = 107

 Score = 28.4 bits (63), Expect = 5.6
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 406 LSSPNLSSRRWVYEQYDTMIQSNSIQLPGGDAGVIRVE 443
           L +PN     WV ++Y   I        G DA  +R E
Sbjct: 39  LYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFE 76


>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase,
           multienzyme complex, oxidoreductase; HET: TDP; 2.0A
           {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2
           PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
          Length = 324

 Score = 28.2 bits (62), Expect = 6.7
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 6/37 (16%)

Query: 639 AEMTISSA--KGMDIILPIEIEKDPKPFLFGEDQGRY 673
           A+MT+  A    + I    E++ DP   +FGED G  
Sbjct: 1   AQMTMVQAITDALRI----ELKNDPNVLIFGEDVGVN 33


>3cnc_A Fiber protein; adenovirus fiber KNOB, viral protein; 2.40A {Human
           adenovirus 16}
          Length = 220

 Score = 28.0 bits (62), Expect = 7.1
 Identities = 14/94 (14%), Positives = 24/94 (25%), Gaps = 19/94 (20%)

Query: 404 KLLSSPNLSSRRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAF--SSDVTPRYV 461
           ++++  +       ++    M                      T A  F  S+   P   
Sbjct: 99  QIITYLSSLKSNLNFKDNQNMATGTI-----------------TSAKGFMPSTTAYPFIT 141

Query: 462 KADPFEGTKQAVAECWRNIIATGAKPLAITDNLN 495
            A           EC+         PL +T  LN
Sbjct: 142 YATETLNEDYIYGECYYKSTNGTLFPLKVTVTLN 175


>1o22_A Orphan protein TM0875; structural genomics, JCSG, PSI, protein
           structure initiative, joint center for structural
           genomics, unknown function; 2.00A {Thermotoga maritima}
           SCOP: d.238.1.1
          Length = 170

 Score = 28.1 bits (62), Expect = 7.2
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 324 QHKAQEILNKWGLHFSIIGITTNDKLF---RVIHRGEEVANLPIKALSDE 370
           + K +EI N+ G+    +      ++F    V+  GEEV +  IKAL+ +
Sbjct: 34  EKKMKEIFNETGVSLEPVNSELIGRIFLKISVLEEGEEVPSFAIKALTPK 83


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 6,416,597
Number of extensions: 302647
Number of successful extensions: 930
Number of sequences better than 10.0: 1
Number of HSP's gapped: 873
Number of HSP's successfully gapped: 44
Length of query: 737
Length of database: 5,693,230
Length adjustment: 99
Effective length of query: 638
Effective length of database: 3,293,074
Effective search space: 2100981212
Effective search space used: 2100981212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.4 bits)