RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter asiaticus str. psy62] (737 letters) >1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A* Length = 615 Score = 437 bits (1125), Expect = e-123 Identities = 206/664 (31%), Positives = 311/664 (46%), Gaps = 69/664 (10%) Query: 19 DECDQIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTLPTTGKHVIQGPGENAGVV 78 + + L R+PT E+ S MW+EHC Y +KK++R LP TG NAGVV Sbjct: 16 RYLNILKEKLGREPTFVELQAFSVMWSEHCGYSHTKKYIRRLPKTG------FEGNAGVV 69 Query: 79 DIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHP 138 ++ V FK+ESHNHPS IEPY GAATGVGGI+RD+ MGARP A +SL Sbjct: 70 NLDDYYSVAFKIESHNHPSAIEPYNGAATGVGGIIRDVLAMGARPTAIFDSLHMS----- 124 Query: 139 KTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKAR 198 ++ G++ GIA Y NS GVPTVGGE+ Y +N +VN AAG+ + + + SKA Sbjct: 125 ---RIIDGIIEGIADYGNSIGVPTVGGELRISSLYAHNPLVNVLAAGVVRNDMLVDSKAS 181 Query: 199 GIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNT 258 G +V G TGRDGI GAS ASE+ + A K +QVGDPF K L+EA LE++ Sbjct: 182 RPGQVIVIFGGATGRDGIHGASFASEDLTGDKATKLS-IQVGDPFAEKMLIEAFLEMVEE 240 Query: 259 DAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTAYEMMLSESQERMLMI 318 V QD+GA G+ + E+ +GNLG + LD+VP E M +E+++SESQERM ++ Sbjct: 241 GLVEGAQDLGAGGVLSATSELVAKGNLGAIVHLDRVPLREPDMEPWEILISESQERMAVV 300 Query: 319 LNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVANLPIKALSDEAPEYDRAW 378 +P+K + EI K L ++ + ++RV++R + V +P++ L++ APE D Sbjct: 301 TSPQKASRILEIARKHLLFGDVVAEVIEEPVYRVMYRNDLVMEVPVQLLAN-APEEDIVE 359 Query: 379 CEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQYDTMIQSNSIQLPGGDAG 438 P IP R V+EQYD M+ ++ + G Sbjct: 360 YTPGKIPEFKRVEFEEVN-----------------AREVFEQYDHMVGTD--TVVPPGFG 400 Query: 439 VIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGN 498 + + + D + GT AV E R ++ GA+PLAIT+ +N+G+ Sbjct: 401 AAVMRIKRDGGYSLVTHSRADLALQDTYWGTLIAVLESVRKTLSVGAEPLAITNCVNYGD 460 Query: 499 PEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYS 558 P+ + + + ++ AC+ P+ SGN S YN G+ I PT + +G + Sbjct: 461 PDVDPV--GLSAMMTALKNACEFSGVPVASGNASLYNTYQGKPIPPTLVVGMLGKVNPQK 518 Query: 559 LMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMI 618 + + + +G + L+ EK + + Sbjct: 519 VAKP-----KPSKVFAVGWNDFELE----------------------REKELWRAIRKLS 551 Query: 619 NAKKITACHDISTGGLIITLAEMTISSAK-GMDIILPIEIEKDPKPFLFGEDQGRYVVCI 677 +S+ L+ T +++ LP +F E V + Sbjct: 552 EE----GAFILSSSQLLTRTHVETFREYGLKIEVKLPEVRPAHQMVLVFSERTPVVDVPV 607 Query: 678 SPEN 681 Sbjct: 608 KEIG 611 >1t3t_A Phosphoribosylformylglycinamidine synthase; PURL, FGAM synthetase, PURS, PURQ, formyl glycinamide, ligase; HET: CYG ADP; 1.90A {Salmonella typhimurium} SCOP: a.5.10.1 c.23.16.1 d.284.1.2 d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 Length = 1303 Score = 430 bits (1107), Expect = e-121 Identities = 159/777 (20%), Positives = 286/777 (36%), Gaps = 104/777 (13%) Query: 15 GLTKDECDQIIHI---LKRQPTLTEIGIISAMWNEHCSYKSS----------------KK 55 L +DE D + L R P E+ + + +EHC +K K Sbjct: 189 ALAEDEIDYLQEAFTKLGRNPNDIELYMFAQANSEHCRHKIFNADWIIDGKPQPKSLFKM 248 Query: 56 WLRTLPTTGKHVIQGPGENAGVVDIGGGD------------------CVVFKMESHNHPS 97 T TT +V+ +NA V++ ++ K+E+HNHP+ Sbjct: 249 IKNTFETTPDYVLSAYKDNAAVMEGSAVGRYFADHNTGRYDFHQEPAHILMKVETHNHPT 308 Query: 98 YIEPYQGAATGVGGILRD--IFTMGARPVAAMNSLRFGAIHHPKTK-------------- 141 I P+ GAATG GG +RD GA+P A + + P + Sbjct: 309 AISPWPGAATGSGGEIRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEEDFGKPERIV 368 Query: 142 ---HLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNN-----------IIVNTFAAGIA 187 +++ G A ++N FG P + G N+ I+ G Sbjct: 369 TALDIMTEGPLGGAAFNNEFGRPALTGYFRTYEEKVNSHNGEELRGYHKPIMLAGGIGNI 428 Query: 188 KTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGEN-IAKKRPTVQVGDPFTGK 246 + + + +G L+ LG G+GG + +S G++ +VQ +P + Sbjct: 429 RADHVQK-GEIVVGAKLIVLGGPAMNIGLGGGAASSMASGQSDADLDFASVQRDNPEMER 487 Query: 247 CLLEAC---LELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMTA 303 E +L + + ++ I D+GA GL+ + E+ + G G +L + + E GM+ Sbjct: 488 RCQEVIDRCWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELRDILSDEPGMSP 547 Query: 304 YEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVI--HRGEEVAN 361 E+ +ESQER ++ + ++ E+ + +++IG T ++ + H + + Sbjct: 548 LEIWCNESQERYVLAVAADQLPLFDELCKRERAPYAVIGDATEEQHLSLHDNHFDNQPID 607 Query: 362 LPIKALSDEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQY 421 LP+ L + P+ R L +D ++ ++L P ++ + ++ Sbjct: 608 LPLDVLLGKTPKMTRDVQTL---KAKGDALNRADITIADAVKRVLHLPTVAEKTFLVTIG 664 Query: 422 DTMIQSNS--------IQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAV 473 D + Q+P D V A S D + AV Sbjct: 665 DRTVTGMVARDQMVGPWQVPVADCAVTTASLDSYYGEAMSIGERAPVALLDFAASARLAV 724 Query: 474 AECWRNIIATGAK-----PLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVS 528 E NI AT L+ G+P ++ + V +V E C L I Sbjct: 725 GEALTNIAATQIGDIKRIKLSANWMAAAGHPGEDAGLYDAVKAVGE--ELCPQLGLTIPV 782 Query: 529 GNVSFY--------NETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIG--ND 578 G S NE + + I+ + D + E + +L+I Sbjct: 783 GKDSMSMKTRWQEGNEQREMTSPLSLVISAFARVEDVRHTLTPQLSTEDNALLLIDLGKG 842 Query: 579 GCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITL 638 L + + P D K + +++ A+K+ A HD S GGL++TL Sbjct: 843 HNALGATALAQVYRQLGDKPADVRDVAQLKGFYDAMQALVAARKLLAWHDRSDGGLLVTL 902 Query: 639 AEMTISSAKGMDIILPIEIEKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIP 695 AEM + G+ + + + D LF E+ G + + E++D V + + Sbjct: 903 AEMAFAGHCGVQVDIA-ALGDDHLAALFNEELGGV-IQVRAEDRDAVEALLAQYGLA 957 >3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A* Length = 394 Score = 117 bits (292), Expect = 1e-26 Identities = 46/326 (14%), Positives = 94/326 (28%), Gaps = 25/326 (7%) Query: 70 GPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNS 129 G G + V+ + G + + + +P +PY +L D++ MG M Sbjct: 67 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLM 126 Query: 130 --LRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIA 187 + + ++ ++ G + G GG+ P + T Sbjct: 127 LLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTV---CQ 183 Query: 188 KTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPF---- 243 I A + ++ T + E I V + Sbjct: 184 PNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAM 243 Query: 244 -TGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMT 302 L LM+T A D+ G+ A + Q ++ + +P + Sbjct: 244 MNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAA 303 Query: 303 AYEMMLSESQER----------MLMILNPEKQHKAQEILNK----WGLHFSIIG-ITTND 347 + + +L+ L E+ + + G IIG + + Sbjct: 304 VSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGN 363 Query: 348 KLFRVIHRGEEVANLPIKALSDEAPE 373 + R+I + + P A + P Sbjct: 364 RTARIIDKPRIIEVAPQVATQNVNPT 389 Score = 80.8 bits (198), Expect = 1e-15 Identities = 40/314 (12%), Positives = 90/314 (28%), Gaps = 25/314 (7%) Query: 402 LLKLLSSPNLSSRRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYV 461 L KLL S + + + ++ I G D VI + H +L ++D V Sbjct: 40 LQKLLESLQENHFQEDEQFLGAVMPRLGI---GMDTCVIPL-RHGGLSLVQTTDYIYPIV 95 Query: 462 KADPFEGTKQAVAECWRNIIATGAKPL--AITDNLNFGNPEKEEIMGQFVHSVKGIREAC 519 DP+ + A A ++ A G + E ++G ++A Sbjct: 96 -DDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAA 154 Query: 520 QILDFPIVSGNVSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHE----GDLILMI 575 + + G + T I+PD ++ + + + + Sbjct: 155 EEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVH 214 Query: 576 GNDGCHLDCSMYSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLI 635 + L ++ + +++ A DI+ G++ Sbjct: 215 QWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGIL 274 Query: 636 ITLAEMTISSAKGMDII---LPI--------EIEKDPKPFLFGED---QGRYVVCISPEN 681 + + + LP+ + + + G G ++C+ E Sbjct: 275 GHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQ 334 Query: 682 QDLVMSEANNKNIP 695 +E + Sbjct: 335 AARFCAEIKSPKYG 348 >2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A* Length = 343 Score = 111 bits (278), Expect = 6e-25 Identities = 55/309 (17%), Positives = 106/309 (34%), Gaps = 24/309 (7%) Query: 65 KHVIQGPGENAGVVDIGGGDCVVFKMESHN-HPSYIEPYQGAATGVGGILRDIFTMGARP 123 + I G +A +D+ G + +S+ P + V G + D+ +GARP Sbjct: 32 DNPILGTLNDAARLDLTGP--LAMSTDSYTVDPIFFPGGDIGTLAVHGTVNDVSMLGARP 89 Query: 124 VAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYN-NNIIVNTF 182 + +L VVA + + GV V G+ + +P + + +NT Sbjct: 90 RYLSCGF---ILEEGLDMDILERVVASMGKAAREAGVFIVTGDTKVVPRGACDKMFINTT 146 Query: 183 AAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDP 242 G + S G ++ +G G G ++ S+ G N A + Sbjct: 147 GIGEILVDPAPSGDRARPGDAILI----SGSMGDHGLTILSQRQGLNFAADVCSDSASLN 202 Query: 243 FTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEGMT 302 + L+ + ++D GL + E+ Q + VP E Sbjct: 203 RVVEKLVLEV------GDIHVLRDPTRGGLATTLNEIAGQSQAVCHVLETAVPVRESVRN 256 Query: 303 AYEMMLSE-----SQERMLMILNPEKQHKAQEILNKW--GLHFSIIGITTNDKLFRVIHR 355 + + ++ +++ IL E+ A +L + G H + IG + Sbjct: 257 GCSFLGLDPLYLANEGKLICILPEERAEAALAVLREGPHGEHAARIGSVKSVGELGAARA 316 Query: 356 GEEVANLPI 364 G+ V + Sbjct: 317 GQVVMETAL 325 Score = 89.9 bits (222), Expect = 2e-18 Identities = 49/290 (16%), Positives = 91/290 (31%), Gaps = 30/290 (10%) Query: 427 SNSIQLPGGDAGVIRVEGHETKALAFSSD---VTPRYVKADPFEGTKQAVAECWRNIIAT 483 N I DA + + G LA S+D V P + + AV ++ Sbjct: 32 DNPILGTLNDAARLDLTGP----LAMSTDSYTVDPIF--FPGGDIGTLAVHGTVNDVSML 85 Query: 484 GAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIF 543 GA+P ++ +I+ + V + +A + IV+G+ +F Sbjct: 86 GARPRYLSCGFILEEGLDMDILERV---VASMGKAAREAGVFIVTGDTKVVPRGACDKMF 142 Query: 544 PTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVD 603 T G D A GD IL+ G+ G H ++ + V Sbjct: 143 INTTGIGEI---LVDPAPSGDRARPGDAILISGSMGDHG----LTILSQRQGLNFAADVC 195 Query: 604 CHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDI-----ILPIEIE 658 + ++ I D + GGL TL E+ S + + + Sbjct: 196 SDSASLNRVVEKLVLEVGDIHVLRDPTRGGLATTLNEIAGQSQAVCHVLETAVPVRESVR 255 Query: 659 KDPKPF----LFGEDQGRYVVCISPENQDLVMS--EANNKNIPLRYLGKV 702 L+ ++G+ + + E + ++ +G V Sbjct: 256 NGCSFLGLDPLYLANEGKLICILPEERAEAALAVLREGPHGEHAARIGSV 305 >3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus} Length = 319 Score = 110 bits (275), Expect = 1e-24 Identities = 41/313 (13%), Positives = 103/313 (32%), Gaps = 15/313 (4%) Query: 58 RTLPTTGKHVIQGPGENAGVVDIGGGDCVVFK----MESHNHPSYIEPYQGAATGVGGIL 113 R + G G++A ++ G + + + + I+P+ + + Sbjct: 11 RYFRRAHPSAVLGVGDDAALIQPSPGMELAVSADMLVANTHFYPNIDPWLIGWKSLAVNI 70 Query: 114 RDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCY 173 D+ MGA+P A + + +S AG + F + +GG+ Sbjct: 71 SDMAAMGAQPRWATLT----IALPEADEDWISKFAAGFFACAAQFDIALIGGD-----TT 121 Query: 174 NNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKK 233 + ++ G A ++ +++ G + A++ + Sbjct: 122 RGPLTISVQIMGETPPGASL-LRSTARADDDIWVSGPLGDAALALAAIQGRYPLSDTELA 180 Query: 234 RPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDK 293 + P L +A L ++ I+ + G ++G + L + Sbjct: 181 ACGKALHQPQPRVVLGQALRGLAHSALDISDGLLADLGHILEHSQVGAEVWLKAIPKSEV 240 Query: 294 VPTCEEGMTAYEMMLSESQE-RMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRV 352 V + + +M+LS + + + + + + +I + L ++IG T+ + + Sbjct: 241 VSAHSQEVAIQKMILSGGDDYELCFTASTQHRQQIADIGRQLSLDMAVIGRITDTQQLVI 300 Query: 353 IHRGEEVANLPIK 365 + L Sbjct: 301 HGLDDAPLTLKEH 313 Score = 85.3 bits (210), Expect = 5e-17 Identities = 55/315 (17%), Positives = 105/315 (33%), Gaps = 32/315 (10%) Query: 419 EQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDV----TPRYVKADPFEGTKQAVA 474 ++Y +++ G DA +I+ LA S+D+ T Y DP+ +++A Sbjct: 10 QRYFRRAHPSAVLGVGDDAALIQPS--PGMELAVSADMLVANTHFYPNIDPWLIGWKSLA 67 Query: 475 ECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFY 534 ++ A GA+P T + +++ I G D ++ G+ + Sbjct: 68 VNISDMAAMGAQPRWATLTIALPEADEDWIS----KFAAGFFACAAQFDIALIGGDTTRG 123 Query: 535 NETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASS 594 T I +G P + + R +A D I + G G Sbjct: 124 PLTISVQI--------MGETPPGASLLR-STARADDDIWVSGPLGDAALALAAIQGRYPL 174 Query: 595 NIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILP 654 + L + VL + DIS GL+ L + S G ++ L Sbjct: 175 SDTELAACGKALHQPQPRVVLGQALRGLAHSALDIS-DGLLADLGHILEHSQVGAEVWLK 233 Query: 655 -----------IEIEKDPKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKV- 702 + K L G D S +++ + ++ + +G++ Sbjct: 234 AIPKSEVVSAHSQEVAIQKMILSGGDDYELCFTASTQHRQQIADIGRQLSLDMAVIGRIT 293 Query: 703 SGSTLSIHNILNIPV 717 L IH + + P+ Sbjct: 294 DTQQLVIHGLDDAPL 308 >2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis KOD1} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A Length = 338 Score = 110 bits (274), Expect = 2e-24 Identities = 55/317 (17%), Positives = 109/317 (34%), Gaps = 21/317 (6%) Query: 61 PTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG 120 + + ++ + G V P + V G + D+ MG Sbjct: 30 LKSAGGIGLDALDDGATIPFGDKHIVFTIDGHTVKPLFFPGGDIGRLAVSGTVNDLAVMG 89 Query: 121 ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN 180 A P+A NS+ I +L V+ + + VP V G+ + + ++ Sbjct: 90 AEPIALANSM---IIGEGLDMEVLKRVLKSMDETAREVPVPIVTGDTKVVEDKIEMFVIT 146 Query: 181 TFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG 240 + +K V + G GI S E K Sbjct: 147 AGIGIAEHPVSDAGAKVGDA----VLVSGTIGDHGIALMSHREGIAFETELKSDVAPI-- 200 Query: 241 DPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEG 300 +++A E + + + A++D AGL+ + E+ + N+GI + +P E Sbjct: 201 -----WDVVKAVAETIGWENIHAMKDPTRAGLSNALNEIARKSNVGILVREADIPIRPEV 255 Query: 301 MTAYEMML-----SESQERMLMILNPEKQHKAQEILNKW--GLHFSIIGITTNDKLFRVI 353 A EM+ ++ +++M++ E +A E + K G + +IIG D +V+ Sbjct: 256 RAASEMLGISPYDVANEGKVVMVVAREYAEEALEAMRKTEKGRNAAIIGEVIADYRGKVL 315 Query: 354 HRGEEVANLPIKALSDE 370 ++ + Sbjct: 316 LETGIGGKRFMEPPEGD 332 Score = 78.9 bits (193), Expect = 4e-15 Identities = 52/301 (17%), Positives = 100/301 (33%), Gaps = 27/301 (8%) Query: 414 RRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSD-VTPRYVKADPFEGTKQA 472 R + + D I K + F+ D T + + + + A Sbjct: 21 RDVILKTLTLKSAGGIGLDALDDGATIPFGD---KHIVFTIDGHTVKPLFFPGGDIGRLA 77 Query: 473 VAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVS 532 V+ ++ GA+P+A+ +++ G E++ + + K + E + + PIV+G+ Sbjct: 78 VSGTVNDLAVMGAEPIALANSMIIGEGLDMEVLKRVL---KSMDETAREVPVPIVTGDTK 134 Query: 533 FYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECA 592 + +F G+ P A GD +L+ G G H M E Sbjct: 135 VVE--DKIEMFVITAGIGIAEHPVSD-----AGAKVGDAVLVSGTIGDHGIALMSHREGI 187 Query: 593 SSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDII 652 + V + V I + I A D + GL L E+ S G+ + Sbjct: 188 AFETELKSDVAPIWDVVK--AVAETIGWENIHAMKDPTRAGLSNALNEIARKSNVGILVR 245 Query: 653 LP---------IEIEKDPKPFLFGEDQGRYVVCISPENQDLVMS--EANNKNIPLRYLGK 701 E ++G+ V+ ++ E + + K +G+ Sbjct: 246 EADIPIRPEVRAASEMLGISPYDVANEGKVVMVVAREYAEEALEAMRKTEKGRNAAIIGE 305 Query: 702 V 702 V Sbjct: 306 V 306 >2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A Length = 334 Score = 101 bits (251), Expect = 8e-22 Identities = 49/315 (15%), Positives = 102/315 (32%), Gaps = 29/315 (9%) Query: 65 KHVIQGPGENAGVVDIG----GGDCVVFKMESHN-HPSYIEPYQGAATGVGGILRDIFTM 119 + E+ +D+ GD + F +S+ P + + G D+ Sbjct: 26 ANPWLAEQEDQARLDLAQLVAEGDRLAFSTDSYVIDPLFFPGGNIGKLAICGTANDVAVS 85 Query: 120 GARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYN-NNII 178 GA P + L VV +A + + G+ V G+ + + + + Sbjct: 86 GAIPRYLSCGF---ILEEGLPMETLKAVVTSMAETARTAGIAIVTGDTKVVQRGAADKLF 142 Query: 179 VNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQ 238 +NT G TN + ++ G L+ +G G GA++ + + + + Sbjct: 143 INTAGMGAIPTNIHWGAQTLTAGDILLV----SGTLGDHGATILNLREQLGLDGELVSDC 198 Query: 239 VGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCE 298 L L + V A++D G+ E GI + +P Sbjct: 199 -------AVLTPLIQTLRDIPGVKALRDATRGGVNAVVHEFAAACGCGIEISESALPVKP 251 Query: 299 EGMTAYE-----MMLSESQERMLMILNPEKQHKAQEIL--NKWGLHFSIIGITTNDKLFR 351 E + ++ ++++ + + L + G ++IG K R Sbjct: 252 AVRGVCELLGLDALNFANEGKLVIAVERNAAEQVLAALHSHPLGKDAALIGEVVERKGVR 311 Query: 352 VIHR--GEEVANLPI 364 + + +LP Sbjct: 312 LAGLYGVKRTLDLPH 326 >1cli_A Protein (phosphoribosyl-aminoimidazole synthetase); AIR synthetase, PURM, purine biosynthesis, trifunctional enzyme, PURL; 2.50A {Escherichia coli} SCOP: d.79.4.1 d.139.1.1 Length = 345 Score = 96.4 bits (239), Expect = 2e-20 Identities = 59/319 (18%), Positives = 98/319 (30%), Gaps = 35/319 (10%) Query: 62 TTGKHVIQGPGENAGVVDIGGG----------DCVVFKMESHNHPSYIEPYQGAATGVGG 111 T V+ G G + + D V K+ + V Sbjct: 33 TRRPEVMGGLGGFGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGI--DLVAM 90 Query: 112 ILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLP 171 + D+ GA P+ ++ S V++GIA G VGGE +P Sbjct: 91 CVNDLVVQGAEPLFFLDY----YATGKLDVDTASAVISGIAEGCLQSGCSLVGGETAEMP 146 Query: 172 --CYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGEN 229 + + V F G+ + + I G L+ LG+ G S+ + + Sbjct: 147 GMYHGEDYDVAGFCVGVVEKSEIIDGSKVSDGDVLIALGSSGPHS--NGYSLVRKILEVS 204 Query: 230 IAKKRPTVQVGDPFTGKCLLEACL------ELMNTDAVIAIQDMGAAGLTCSAIEMGNQG 283 + T G P L + EL+ V AI + G + + Sbjct: 205 GCDPQTTELDGKPLADHLLAPTRIYVKSVLELIEKVDVHAIAHLTGGGFWENIPRVLPDN 264 Query: 284 NLGIT-LDLDKVPT-----CEEGMTAYEMMLSESQE--RMLMILNPEKQHKAQEILNKWG 335 + + P G + M M++ L + KA +LN G Sbjct: 265 TQAVIDESSWQWPEVFNWLQTAGNVEHHEMYRTFNCGVGMIIALPAPEVDKALALLNANG 324 Query: 336 LHFSIIG-ITTNDKLFRVI 353 + IG I +D RV+ Sbjct: 325 ENAWKIGIIKASDSEQRVV 343 Score = 43.6 bits (102), Expect = 2e-04 Identities = 41/306 (13%), Positives = 92/306 (30%), Gaps = 38/306 (12%) Query: 427 SNSIQLPGGDAGVIRV-EGHETKALAFSSD-----VTPRYVKADPFEGTKQAVAECWRNI 480 + GG + + + + L +D + VA C ++ Sbjct: 36 PEVMGGLGGFGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDL 95 Query: 481 IATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQ 540 + GA+PL D G + + + GI E C +V G + Sbjct: 96 VVQGAEPLFFLDYYATGKLDVD----TASAVISGIAEGCLQSGCSLVGGETAEMPGMYHG 151 Query: 541 SIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPP 600 + VG++ ++ +GD+++ +G+ G H + YSL + Sbjct: 152 EDY-DVAGFCVGVVEKSEIIDG-SKVSDGDVLIALGSSGPH--SNGYSLVRKILEVSGCD 207 Query: 601 KVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMT-ISSAKGMDIILPIEI-- 657 L+ L + + ++ + +A +T + + +LP Sbjct: 208 PQTTELDGKPLADHLLAPTRIYVKSVLELIEKVDVHAIAHLTGGGFWENIPRVLPDNTQA 267 Query: 658 ------EKDPKPFLFGEDQG---------------RYVVCISPENQDLVMSEANNKNIPL 696 + P+ F + + G ++ + D ++ N Sbjct: 268 VIDESSWQWPEVFNWLQTAGNVEHHEMYRTFNCGVGMIIALPAPEVDKALALLNANGENA 327 Query: 697 RYLGKV 702 +G + Sbjct: 328 WKIGII 333 >2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase, structural genomics, NPPSFA; 1.98A {Aquifex aeolicus} PDB: 2yye_A* 2zod_A 2zau_A Length = 345 Score = 94.3 bits (233), Expect = 8e-20 Identities = 58/353 (16%), Positives = 106/353 (30%), Gaps = 52/353 (14%) Query: 36 EIGIISAMWNEHCSYKSSKKWLRTL-----PTTGKHVIQGPGENAGVVDIGGGDCVVFKM 90 + ++ + + C+ K L+ + T + + G++AGV + G V Sbjct: 10 MVELLKLVRSSGCAAKVGPGDLQEILKGFNIYTDESTLVSIGDDAGVYEHNGIIWVY--T 67 Query: 91 ESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAG 150 P +PY A L D++ MG PV A+ F + + V+ G Sbjct: 68 VDIITPVVNDPYLWGAISTANALSDVYAMGGIPVNALAISCF--NNCELDIEIFREVIRG 125 Query: 151 IAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAK 210 +GG + AGI + +G L+ Sbjct: 126 ALDKLREAKTVLLGGHT----IDDKEPKFGLSVAGICPEGKYITQSGAQVGQLLILTKPI 181 Query: 211 TGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAA 270 I G + + + + D L A D+ Sbjct: 182 GTGILIKGLKEGILKEEDINEAIENMLALNDKARNLMLSLDA---------TACTDVTGF 232 Query: 271 GLTCSAIEMGNQGNLGITLDLDKVPTCE----------------EGMTAYEMMLSESQER 314 GL A + N+G + +KVP + E + + L + + Sbjct: 233 GLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVKKKIYPKGAIENLNFVKNYLKSNLDN 292 Query: 315 --------------MLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVI 353 +L +N EK K E + +++ IIG T + + V+ Sbjct: 293 WKLILLSDPVTSGGLLFTINKEKLEKIDETAKELEVNYWIIGETIAENVLEVL 345 Score = 73.1 bits (178), Expect = 2e-13 Identities = 46/309 (14%), Positives = 88/309 (28%), Gaps = 51/309 (16%) Query: 428 NSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNIIATGAKP 487 +++ G DAGV G ++ D+ V DP+ + A ++ A G P Sbjct: 45 STLVSIGDDAGVYEHNG---IIWVYTVDIITPVV-NDPYLWGAISTANALSDVYAMGGIP 100 Query: 488 LAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPT 547 + F E + F ++G + + ++ G+ E P Sbjct: 101 VNALAISCF--NNCELDIEIFREVIRGALDKLREAKTVLLGGHTIDDKE-------PKFG 151 Query: 548 IAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHLE 607 ++ GI P+ +T+ + LIL L + +I + L Sbjct: 152 LSVAGICPEGKYITQSGAQVGQLLILTKPIGTGILIKGLKEGILKEEDINEAIENMLALN 211 Query: 608 KNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKP---- 663 +LS+ C D++ GL+ + +S G I Sbjct: 212 DKARNLMLSLDATA----CTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVK 267 Query: 664 ------------------FLFGEDQ------------GRYVVCISPENQDLVMSEANNKN 693 D G + I+ E + + A Sbjct: 268 KKIYPKGAIENLNFVKNYLKSNLDNWKLILLSDPVTSGGLLFTINKEKLEKIDETAKELE 327 Query: 694 IPLRYLGKV 702 + +G+ Sbjct: 328 VNYWIIGET 336 >3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A Length = 349 Score = 89.0 bits (220), Expect = 4e-18 Identities = 43/303 (14%), Positives = 91/303 (30%), Gaps = 27/303 (8%) Query: 62 TTGKHVIQGPGENAGVVDIGGG----------DCVVFKMESHNHPSYIEPYQGAATGVGG 111 T V+ G G + ++ D V K+ + V Sbjct: 37 TRRPEVMGGLGGFGALCELPTKYKHPVLVSGTDGVGTKLRLALDMKKHDTI--GIDLVAM 94 Query: 112 ILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLP 171 + D+ GA P+ ++ G + ++SG+ G + Sbjct: 95 CVNDLIVQGAEPLFFLDYYATGKLDVDTAAEVISGIADGCLQAGCALIGGETAEMPGM-- 152 Query: 172 CYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRD-GIGGASMASEEFGENI 230 + V F G+ + I +G L+ +G+ G E + Sbjct: 153 YEGEDYDVAGFCVGVVEKEEIIDGSKVQVGDALIAVGSSGPHSNGYSLVRKILEVSKADK 212 Query: 231 AKKRPTVQVGDPFTG--KCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGIT 288 ++ +G+ K +++ L+L+ + AI + G + + +G Sbjct: 213 NERLAGKTIGEHLLAPTKIYIKSGLKLIAEHDIHAISHITGGGFWENIPRVLPEG-TKAV 271 Query: 289 LDLDKVPTC-------EEGMTAYEMMLSE--SQERMLMILNPEKQHKAQEILNKWGLHFS 339 +D E+G M +++ L ++ + A +L G Sbjct: 272 IDGKSWEWPVIFQWLQEKGNVTTHEMYRTFNCGVGLIIALPKDQANAAVALLQAEGETAW 331 Query: 340 IIG 342 +IG Sbjct: 332 VIG 334 Score = 51.3 bits (122), Expect = 8e-07 Identities = 41/317 (12%), Positives = 97/317 (30%), Gaps = 59/317 (18%) Query: 427 SNSIQLPGGDAGVIRV-EGHETKALAFSSDVTPRYVKADPFEGTKQAVAE---------- 475 + GG + + ++ L +D GTK +A Sbjct: 40 PEVMGGLGGFGALCELPTKYKHPVLVSGTDGV----------GTKLRLALDMKKHDTIGI 89 Query: 476 -----CWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGN 530 C ++I GA+PL D G + + + GI + C ++ G Sbjct: 90 DLVAMCVNDLIVQGAEPLFFLDYYATGKLDVDTA----AEVISGIADGCLQAGCALIGGE 145 Query: 531 VSFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLE 590 + + VG++ ++ GD ++ +G+ G H + + Sbjct: 146 TAEMPGMYEGEDYDV-AGFCVGVVEKEEIIDG-SKVQVGDALIAVGSSGPHSNGYSLVRK 203 Query: 591 CASSNIGPPPK-------VDCHLE--KNHGFFVLSMINAKKITACHDISTGGLIITLAEM 641 + + + L K + L +I I A I+ GG + Sbjct: 204 ILEVSKADKNERLAGKTIGEHLLAPTKIYIKSGLKLIAEHDIHAISHITGGGF---WENI 260 Query: 642 TISSAKGMDIILPIEIEKDPKPFLFGEDQG---------------RYVVCISPENQDLVM 686 +G ++ + + P F + +++G ++ + + + + Sbjct: 261 PRVLPEGTKAVIDGKSWEWPVIFQWLQEKGNVTTHEMYRTFNCGVGLIIALPKDQANAAV 320 Query: 687 SEANNKNIPLRYLGKVS 703 + + +G+++ Sbjct: 321 ALLQAEGETAWVIGEIA 337 >2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis} Length = 346 Score = 79.9 bits (196), Expect = 2e-15 Identities = 54/324 (16%), Positives = 96/324 (29%), Gaps = 37/324 (11%) Query: 62 TTGKHVIQGPGENAGVVDIGGG-----------DCVVFKMESHNHPSYIEPYQGAATGVG 110 T K V+ G G G+ D+ D V K+ + A + Sbjct: 29 TMRKEVLGGLGGFGGMFDLSKFALEEPVLVSGTDGVGTKLMLAFMADKHDTIGIDAVAM- 87 Query: 111 GILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFL 170 + DI GA P+ ++ + G K ++++ G+ G G +GGE + Sbjct: 88 -CVNDIVVQGAEPLFFLDYIACGKAEPSKIENIVKGISEGC----RQAGCALIGGETAEM 142 Query: 171 P--CYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGE 228 P + F GI I + + G L+ L + Sbjct: 143 PGMYSTEEYDLAGFTVGIVDKKKIVTGEKIEAGHVLIGLASSGIHSNGYSLVRKVLLEDG 202 Query: 229 NIAKKRPTVQVGDPFTGKCLLEACLE------LMNTDAVIAIQDMGAAGLTCSAIEMGNQ 282 ++ R ++ P + L + L+ V + + G I Sbjct: 203 ELSLDRIYGRLELPLGEELLKPTKIYVKPILELLKNHEVYGMAHITGGGFIE-NIPRMLP 261 Query: 283 GNLGITLDLDKVPTCEEGMTAYEMMLSESQE---------RMLMILNPEKQHKAQEILNK 333 +G ++L E+ E +E M++ + E +L + Sbjct: 262 EGIGAEIELGSWKIQPIFSLLQEVGKLEEKEMFNIFNMGIGMVVAVKEEDAKDIVRLLEE 321 Query: 334 WGLHFSIIGITTNDKLFRVIHRGE 357 G IIG T V G Sbjct: 322 QGETARIIGRTVQGA--GVTFNGG 343 Score = 42.9 bits (100), Expect = 2e-04 Identities = 50/312 (16%), Positives = 99/312 (31%), Gaps = 47/312 (15%) Query: 427 SNSIQLPGGDAGVIRV--EGHETKALAFSSD-------VTPRYVKADPFEGTKQAVAECW 477 + GG G+ + E L +D + K D AVA C Sbjct: 32 KEVLGGLGGFGGMFDLSKFALEEPVLVSGTDGVGTKLMLAFMADKHDTI--GIDAVAMCV 89 Query: 478 RNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNET 537 +I+ GA+PL D + G E +I +G R+A ++ G + Sbjct: 90 NDIVVQGAEPLFFLDYIACGKAEPSKIENIVKGISEGCRQAG----CALIGGETAEMPGM 145 Query: 538 NGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECAS-SNI 596 + VGI+ ++T + G +++ + + G H + + Sbjct: 146 YSTEEY-DLAGFTVGIVDKKKIVTG-EKIEAGHVLIGLASSGIHSNGYSLVRKVLLEDGE 203 Query: 597 GPPPKVDCHLEKNHGFFVLS-----------MINAKKITACHDISTGGLIITLAEMTISS 645 ++ LE G +L ++ ++ I+ GG I + M Sbjct: 204 LSLDRIYGRLELPLGEELLKPTKIYVKPILELLKNHEVYGMAHITGGGFIENIPRMLP-- 261 Query: 646 AKGMDIILPIEIEKDPKPFLFGEDQG---------------RYVVCISPENQDLVMSEAN 690 +G+ + + K F ++ G VV + E+ ++ Sbjct: 262 -EGIGAEIELGSWKIQPIFSLLQEVGKLEEKEMFNIFNMGIGMVVAVKEEDAKDIVRLLE 320 Query: 691 NKNIPLRYLGKV 702 + R +G+ Sbjct: 321 EQGETARIIGRT 332 >2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus HB8} Length = 311 Score = 80.1 bits (196), Expect = 2e-15 Identities = 46/305 (15%), Positives = 80/305 (26%), Gaps = 23/305 (7%) Query: 62 TTGKHVIQGPGENAGVVDIGGGDCVVFK---MESHNHPSYIEPYQGAATGVGGILRDIFT 118 PG++AG V G ++ + + P++ GV D+ Sbjct: 19 GYPPEAPLPPGDDAGGVWAEGRAWLLKTDGFLYREVALKGMGPFEVGFRGVAATASDLLA 78 Query: 119 MGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNII 178 RP+ L +V G A + G +GG+ + Sbjct: 79 KMGRPLGFTLGLFLPEDLEEGFVL---ELVRGAAEAAKRLGAFLLGGDTNRGVEVALTVS 135 Query: 179 VNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQ 238 A A+ G + GR G + E K R Sbjct: 136 GYALAEAPLPRKALPGDLL-------YLAGDRWGRTGAAIRAHYEGRSLEGFPKIREAAF 188 Query: 239 VGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCE 298 P L L + + + +E+ + L D + Sbjct: 189 YPLPRLELLALSGLLRGSLDSSDGLAETLWQLADLGVGVEVEA-----LPLYPDVLAFAG 243 Query: 299 EGMTAYEMMLS--ESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRG 356 A E++L E E ++++ E + GL G + V RG Sbjct: 244 SEEAALELVLYGGEEFE-AVLVVPQEGAAAVEARAKAKGLPLFRAGRVVAGE--GVYLRG 300 Query: 357 EEVAN 361 + Sbjct: 301 APLPR 305 Score = 62.4 bits (150), Expect = 3e-10 Identities = 50/287 (17%), Positives = 98/287 (34%), Gaps = 20/287 (6%) Query: 433 PGGDAGVIRVEGHETKALAFSSDV----TPRYVKADPFEGTKQAVAECWRNIIATGAKPL 488 PG DAG + EG +A +D PFE + VA +++A +PL Sbjct: 28 PGDDAGGVWAEG---RAWLLKTDGFLYREVALKGMGPFEVGFRGVAATASDLLAKMGRPL 84 Query: 489 AITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQSIFPTPTI 548 T L +E + + V +G EA + L ++ G+ + E Sbjct: 85 GFTLGLFLPEDLEEGFVLELV---RGAAEAAKRLGAFLLGGDTNRGVEVALTVSGYALAE 141 Query: 549 AGVGILPDYSLMTRIDSAHEGD--LILMIGNDGCHLDCSMYSLECASSNIGPPPKVDCHL 606 A + + + G + +G L+ E A P P+++ L Sbjct: 142 APLPRKALPGDLLYLAGDRWGRTGAAIRAHYEGRSLEGFPKIREAA---FYPLPRLEL-L 197 Query: 607 EKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKDPKPFLF 666 + + ++ G+ + + + + + E + L+ Sbjct: 198 ALSGLLRGSLDSSDGLAETLWQLADLGVGVEVEALPLYPD---VLAFAGSEEAALELVLY 254 Query: 667 GEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKV-SGSTLSIHNI 712 G ++ V+ + E V + A K +PL G+V +G + + Sbjct: 255 GGEEFEAVLVVPQEGAAAVEARAKAKGLPLFRAGRVVAGEGVYLRGA 301 >2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus} Length = 348 Score = 71.8 bits (175), Expect = 5e-13 Identities = 52/330 (15%), Positives = 87/330 (26%), Gaps = 47/330 (14%) Query: 62 TTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAAT-------------- 107 T V+ G G G+ D+ + P I G T Sbjct: 31 TMRPEVLGGIGGFGGLFDLSA--------LGYRQPVLISGTDGVGTKLKLAFLLDRHDTI 82 Query: 108 ---GVGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVG 164 V + DI GA P+ ++ + G K ++ GV G G +G Sbjct: 83 GIDCVAMCVNDIIVQGAEPLFFLDYIACGKAVPEKIAAIVKGVADGC----VEAGCALIG 138 Query: 165 GEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASE 224 GE +P + + + I +G + G S+ Sbjct: 139 GETAEMPGMYDEDEYDLAGFAVGVAEKERLITGETIQAGDALVGLPSSGLHSNGYSLVRR 198 Query: 225 EFGENIAKKRPTVQVGDPFTGK--------CLLEACLELMNTDAVIAIQDMGAAGLTCSA 276 E + + + + + + GL + Sbjct: 199 IVFEQAKLSLDEIYEPLDVPLGEELLKPTRIYAKLLRSVRERFTIKGMAHITGGGLIENI 258 Query: 277 IEMGNQG-NLGITLDLDKVP-----TCEEGMTAYEMMLSESQE--RMLMILNPEKQHKAQ 328 M G I L + E+G E M S +++ ++PE Sbjct: 259 PRMLPPGIGARIQLGSWPILPIFDFLREKGSLEEEEMFSVFNMGIGLVLAVSPETAAPLV 318 Query: 329 EILNKWGLHFSIIGITTNDKLFRVIHRGEE 358 E L++ G IIG V G Sbjct: 319 EWLSERGEPAYIIGEVAKGA--GVSFAGGG 346 Score = 43.3 bits (101), Expect = 2e-04 Identities = 42/309 (13%), Positives = 93/309 (30%), Gaps = 39/309 (12%) Query: 427 SNSIQLPGGDAGVIRV--EGHETKALAFSSD-----VTPRYVKADPFEGTKQAVAECWRN 479 + GG G+ + G+ L +D + ++ VA C + Sbjct: 34 PEVLGGIGGFGGLFDLSALGYRQPVLISGTDGVGTKLKLAFLLDRHDTIGIDCVAMCVND 93 Query: 480 IIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNG 539 II GA+PL D + G + VKG+ + C ++ G + Sbjct: 94 IIVQGAEPLFFLDYIACGKAV----PEKIAAIVKGVADGCVEAGCALIGGETAEMPGMYD 149 Query: 540 QSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIG-- 597 + + A + + ++ GD ++ + + G H + Sbjct: 150 EDEYDLAGFAVGVAEKERLI--TGETIQAGDALVGLPSSGLHSNGYSLVRRIVFEQAKLS 207 Query: 598 --------PPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGM 649 P + L+ + L ++ T ++ + + G+ Sbjct: 208 LDEIYEPLDVPLGEELLKPTRIYAKLLRSVRERFT-IKGMAHITGGGLIENIPRMLPPGI 266 Query: 650 DIILPIEIEKDPKPFLFGEDQG---------------RYVVCISPENQDLVMSEANNKNI 694 + + F F ++G V+ +SPE ++ + + Sbjct: 267 GARIQLGSWPILPIFDFLREKGSLEEEEMFSVFNMGIGLVLAVSPETAAPLVEWLSERGE 326 Query: 695 PLRYLGKVS 703 P +G+V+ Sbjct: 327 PAYIIGEVA 335 >2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens} Length = 334 Score = 65.6 bits (159), Expect = 3e-11 Identities = 46/321 (14%), Positives = 96/321 (29%), Gaps = 50/321 (15%) Query: 78 VDIGGGDCVVFKMESHNHPSYIEPYQGAAT-GVG---------------GI------LRD 115 VD+GG +F +++ + +P + T GVG G + D Sbjct: 8 VDLGG-FAGLFDLKAAG---FKDPLLASGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVND 63 Query: 116 IFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNN 175 I GA P+ ++ G + T+ +++G+ + + P Sbjct: 64 ILAQGAEPLFFLDYFSCGKLDLSVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEY 123 Query: 176 NIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGEN--IAKK 233 ++ A + I V +G + G S+ + ++ Sbjct: 124 DLAGFAVGAMERDQKLPHLER---ITEGDVVVGIASSGLHSNGFSLVRKIVAKSSLQYSS 180 Query: 234 RPTVQVGDPFTGKCLLEACLE-------LMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLG 286 GD G LL ++ + V A + GL + I LG Sbjct: 181 PAPDGCGDQTLGDLLLTPTRIYSHSLLPVLRSGHVKAFAHITGGGLLEN-IPRVLPEKLG 239 Query: 287 ITLDLDKVPTCEEGMTAYEMMLSESQE---------RMLMILNPEKQHKAQEILNKWGLH 337 + LD + +E +++++ E+ + + + Sbjct: 240 VDLDAQTWRIPRVFSWLQQEGHLSEEEMARTFNCGVGAVLVVSKEQTEQILRGIQQHKEE 299 Query: 338 FSIIG--ITTNDKLFRVIHRG 356 +IG + + RV + Sbjct: 300 AWVIGSVVARAEGSPRVKVKN 320 Score = 51.0 bits (121), Expect = 1e-06 Identities = 34/256 (13%), Positives = 78/256 (30%), Gaps = 30/256 (11%) Query: 472 AVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNV 531 VA C +I+A GA+PL D + G + K +A ++ G Sbjct: 56 LVAMCVNDILAQGAEPLFFLDYFSCGKLDLSVTEAVVAGIAKACGKAG----CALLGGET 111 Query: 532 SFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSM----- 586 + + + A + D + ++ EGD+++ I + G H + Sbjct: 112 AEMPDMYPPGEYDLAGFAVGAMERDQK-LPHLERITEGDVVVGIASSGLHSNGFSLVRKI 170 Query: 587 -----YSLECASSNIGPPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEM 641 + + + L + S++ + + L + Sbjct: 171 VAKSSLQYSSPAPDGCGDQTLGDLLLTPTRIYSHSLLPVLRSGHVKAFAHITGGGLLENI 230 Query: 642 TISSAKGMDIILPIEIEKDPKPFLFGEDQG---------------RYVVCISPENQDLVM 686 + + + L + + P+ F + + +G V+ +S E + ++ Sbjct: 231 PRVLPEKLGVDLDAQTWRIPRVFSWLQQEGHLSEEEMARTFNCGVGAVLVVSKEQTEQIL 290 Query: 687 SEANNKNIPLRYLGKV 702 +G V Sbjct: 291 RGIQQHKEEAWVIGSV 306 >3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold, csgid, ATP-binding, nucleotide-BIND purine biosynthesis; HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp} Length = 350 Score = 59.3 bits (143), Expect = 3e-09 Identities = 56/329 (17%), Positives = 95/329 (28%), Gaps = 48/329 (14%) Query: 62 TTGKHVIQGPGENAGVVDIGGG-------------DCVVFKMESHNHPSYIEPYQGAATG 108 T + V+ G G + + D V K + + Sbjct: 33 TFTQDVLTGLGSFGSLYSLKNIINNYDDPVLVQSIDGVGTKTKVAVM--CGKFENLGYDL 90 Query: 109 VGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVE 168 DI MGA+P+ ++ + + + +V G++ GV VGGE Sbjct: 91 FSAATNDIVVMGAKPITFLDYVAHDKLDPAIMEE----LVKGMSKACAECGVSLVGGETA 146 Query: 169 FLP--CYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEF 226 +P I + GI I + + G + L + G+ + Sbjct: 147 EMPGVYQAGEIDMVGVITGIVDRKRIINGENIKEGDIVFGLSS----SGLHTNGYSFARK 202 Query: 227 GENIAKKRPTVQVGDPFTGKCLLEACLE------------LMNTDAVIAIQDMGAAGLTC 274 GK + + LE L N + + + G Sbjct: 203 LFFDVAGNKHTDTYPELEGKTIGDVLLEPHINYTNIIHDFLDNGVDIKGMAHITGGGFIE 262 Query: 275 SAIEMGNQGNLGITLDLDKVPT-------CEEGMTAYEMMLSESQE--RMLMILNPEKQH 325 + + QG LG +D D T G + M M +I + ++ Sbjct: 263 NIPRVLPQG-LGAQIDKDSFATPAIFKLMQRIGDISEFEMYRSFNMGIGMTIIASQDQFD 321 Query: 326 KAQEILNK-WGLHFSIIGITTNDKLFRVI 353 K QE+ K IG TN +I Sbjct: 322 KMQELAKKHTNTKLYQIGKITNSGKVEII 350 Score = 50.5 bits (120), Expect = 1e-06 Identities = 40/265 (15%), Positives = 77/265 (29%), Gaps = 41/265 (15%) Query: 472 AVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNV 531 + +I+ GAKP+ D + + VKG+ +AC +V G Sbjct: 90 LFSAATNDIVVMGAKPITFLDYVAHDKLDPA----IMEELVKGMSKACAECGVSLVGGET 145 Query: 532 SFYNETNGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLEC 591 + GI+ ++ ++ EGD++ + + G H + ++ + Sbjct: 146 AEMPGVYQAGEIDM-VGVITGIVDRKRIING-ENIKEGDIVFGLSSSGLHTNGYSFARKL 203 Query: 592 ASSNIGPPPKVDCHLEKNHGFFVLSMI---------------NAKKITACHDISTGGLII 636 G D + E ++ N I I+ GG I Sbjct: 204 FFDVAGNKHT-DTYPELEGKTIGDVLLEPHINYTNIIHDFLDNGVDIKGMAHITGGGFIE 262 Query: 637 TLAEMTISSAKGMDIILPIEIEKDPKPFLFGEDQG---------------RYVVCISPEN 681 + + P F + G + S + Sbjct: 263 NIPRVLPQGLGAQIDKDSFAT---PAIFKLMQRIGDISEFEMYRSFNMGIGMTIIASQDQ 319 Query: 682 QDLVMSEAN-NKNIPLRYLGKVSGS 705 D + A + N L +GK++ S Sbjct: 320 FDKMQELAKKHTNTKLYQIGKITNS 344 >3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A Length = 342 Score = 48.4 bits (114), Expect = 6e-06 Identities = 41/300 (13%), Positives = 87/300 (29%), Gaps = 44/300 (14%) Query: 422 DTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVK----ADPFEGTKQAVAECW 477 D + ++ ++ G D + K L ++DV V P +A++ Sbjct: 49 DLIKKTLESKVIGDDTAPVEYCS---KKLLLTTDVLNEGVHFLRSYIPEAVGWKAISVNV 105 Query: 478 RNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNET 537 ++IA G P +LN + + +F VK E + Sbjct: 106 SDVIANGGLPKWALISLNLPEDLEVSYVERFYIGVKRACEFYK------------CEVVG 153 Query: 538 NGQSIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIG 597 S I+ + + R + + + + +E Sbjct: 154 GNISKSEKIGISVFLVGETERFVGRDGARLGDSVFVSGTLGDSRAGLELLLMEKEEYEPF 213 Query: 598 PPPKVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPI-- 655 + HL + + + +K + GL+ + S ++I+ Sbjct: 214 ELALIQRHLRPTA--RIDYVKHIQKYANASMDISDGLVADANHLAQRSGVKIEILSEKLP 271 Query: 656 ----------EIEKDPKPFLF--GEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVS 703 + K+P + GED Y + + E N + + +G+V Sbjct: 272 LSNELKMYCEKYGKNPIEYALFGGED---YQLLFT------HPKERWNPFLDMTEIGRVE 322 Score = 41.1 bits (95), Expect = 0.001 Identities = 35/304 (11%), Positives = 81/304 (26%), Gaps = 36/304 (11%) Query: 69 QGPGENAGVVDIGGGDCVV---FKMESHNHPSYIEPYQGAATGVGGILRDIFTMGARPVA 125 + G++ V+ ++ E + P + + D+ G P Sbjct: 58 KVIGDDTAPVEYCSKKLLLTTDVLNEGVHFLRSYIPEAVGWKAISVNVSDVIANGGLPKW 117 Query: 126 AMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFAAG 185 A+ SL G+ + VGG + ++ + Sbjct: 118 ALISLNLPEDLEVSYVE---RFYIGVKRACEFYKCEVVGGNISKSEKIGISVFLVGETER 174 Query: 186 IAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVGDPFTG 245 + + + +G G A + + + + Sbjct: 175 FVGRDGARLGDSVFV----------SGTLGDSRAGLELLLMEKEEYEPFELALIQRHLRP 224 Query: 246 KCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEE------ 299 ++ + + GL A + + + I + +K+P E Sbjct: 225 TARIDYVKHIQK---YANASMDISDGLVADANHLAQRSGVKIEILSEKLPLSNELKMYCE 281 Query: 300 --GMTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGE 357 G E L ++ L+ +P+++ L + IG + V G+ Sbjct: 282 KYGKNPIEYALFGGEDYQLLFTHPKERWNP-------FLDMTEIGRVEEGE--GVFVDGK 332 Query: 358 EVAN 361 +V Sbjct: 333 KVEP 336 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 41.1 bits (96), Expect = 9e-04 Identities = 53/285 (18%), Positives = 78/285 (27%), Gaps = 138/285 (48%) Query: 4 PSPILEILTAHGLTKDECDQIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTLPTT 63 PSP+L I LT+++ ++ N H LP Sbjct: 335 PSPMLSI---SNLTQEQVQDYVNKT----------------NSH------------LPAG 363 Query: 64 GKHV----IQGPGENAGVVDIGGGDCVVFKMESHNHPS--YIEPYQGAATGVGGILRDI- 116 K V + G +N VV G P Y G+ LR Sbjct: 364 -KQVEISLVNGA-KNL-VV--SG------------PPQSLY---------GLNLTLRKAK 397 Query: 117 -----------FTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGI----AGYS-----N 156 F+ R + N RF + P HLL I + Sbjct: 398 APSGLDQSRIPFS--ERKLKFSN--RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453 Query: 157 SFGVP---TVGGEVEFLPCYNNNII-----------VN-----TFAAGIAKTNAI-F--- 193 +P T G L + +I V F A T+ + F Sbjct: 454 DIQIPVYDTFDGSD--LRVLSGSISERIVDCIIRLPVKWETTTQFKA----THILDFGPG 507 Query: 194 -SSKARGIGLPLVYLGAKTGR--DGIG-----GASM---ASEEFG 227 +S G+G L T R DG G ++ +++G Sbjct: 508 GAS---GLG-VL------THRNKDGTGVRVIVAGTLDINPDDDYG 542 Score = 32.2 bits (73), Expect = 0.39 Identities = 86/551 (15%), Positives = 159/551 (28%), Gaps = 240/551 (43%) Query: 113 LRDIFTMGARPVAAMNS------------LRFGAIHHPKTKHLLSGVVAGIAGYS----- 155 L++ F + +F ++ S V G Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKF-------LGYVSSLVEPSKVGQFDQVLN 85 Query: 156 ---NSFGVPTVGGEVEFLPCYNNNIIVNTFAAGIAKTNAIFSSKARGIGLPLV-YLGAKT 211 F E +L N+I + AA + + N K + + + Y+ A Sbjct: 86 LCLTEF-------ENCYLE--GNDI--HALAAKLLQENDTTLVKTKEL---IKNYITA-- 129 Query: 212 GRDGIGGASMASEEFGENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAG 271 MA KK + L A + + G A Sbjct: 130 -------RIMA----KRPFDKKSNSA----------LFRA------------VGE-GNAQ 155 Query: 272 LTCSAIEMGNQGNLGITLDLDKVPTC--E--EGMTAYEMMLSESQERMLMILNPEKQHKA 327 L AI G QGN E + Y +++ + L+ + Sbjct: 156 LV--AI-FGGQGN---------TDDYFEELRDLYQTYHVLVGD-----LI-------KFS 191 Query: 328 QEILNKWGLHFSIIGITTN-DKLFRVIHRGEEVANLPIKALSDEAPEYDRAWCEPITIPP 386 E L+ +I T + +K+F +G + ++ L + + D+ + ++IP Sbjct: 192 AETLS------ELIRTTLDAEKVF---TQGLNI----LEWLENPSNTPDKDYL--LSIPI 236 Query: 387 SNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHE 446 S P L+ +++L Y ++ ++ G Sbjct: 237 SCP-LIG--------VIQLA-------------HY--VV-------------TAKLLG-- 257 Query: 447 TKALAFSSDVTPRYVKADPFEGT---KQ------AVAEC--WRNIIATGAKPLAITDNLN 495 TP + +G Q A+AE W + + K AIT + Sbjct: 258 ---------FTPGEL-RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK--AIT--VL 303 Query: 496 FGNPEKEEIMGQFVHSVKGIREACQILDFP-------IVSGNVSFYNETNGQSIFPTP-- 546 F F+ G+R C +P I+ ++ N + + P+P Sbjct: 304 F-----------FI----GVR--CY-EAYPNTSLPPSILEDSLE-----NNEGV-PSPML 339 Query: 547 TIAGVGILPDYSLMTRIDS--AH--EGD-----LILMIGNDGCHLDC-----SMYSLECA 592 +I+ L + ++ +H G L+ N +L S+Y L Sbjct: 340 SISN---LTQEQVQDYVNKTNSHLPAGKQVEISLV----NGAKNLVVSGPPQSLYGLNLT 392 Query: 593 SSNIGPPPKVD 603 P +D Sbjct: 393 LRKAKAPSGLD 403 Score = 31.5 bits (71), Expect = 0.68 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 8/55 (14%) Query: 311 SQERMLMILNPEKQHKA-QEILNKWGLHF------SIIGITTNDKLFRVIHRGEE 358 SQE+ M ++ K KA Q++ N+ HF SI+ I N+ + IH G E Sbjct: 1626 SQEQG-MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679 >1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A Length = 250 Score = 30.6 bits (69), Expect = 1.3 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 7/55 (12%) Query: 124 VAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNII 178 VA +N L PKT+H ++ V I+ +++ +V G + + + + + Sbjct: 94 VAFLNEL-------PKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSL 141 >3a2s_X Outer membrane protein II; beta barrel, porin, neisseria mening cell membrane, cell outer membrane, ION transport, membrane transmembrane; HET: SUC LDA; 2.20A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X* Length = 355 Score = 28.8 bits (63), Expect = 3.9 Identities = 20/177 (11%), Positives = 41/177 (23%), Gaps = 12/177 (6%) Query: 76 GVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRD------------IFTMGARP 123 G D+G G ++++E + G G+ + G Sbjct: 61 GQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNV 120 Query: 124 VAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVNTFA 183 A + + T + + S F + + N+ Sbjct: 121 NAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTK 180 Query: 184 AGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG 240 + +A + G AK +A + K +V Sbjct: 181 SSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVV 237 >2e0g_A Chromosomal replication initiator protein DNAA; domain structure, structural genomics, NPPSFA; NMR {Escherichia coli K12} Length = 107 Score = 28.4 bits (63), Expect = 5.6 Identities = 12/38 (31%), Positives = 16/38 (42%) Query: 406 LSSPNLSSRRWVYEQYDTMIQSNSIQLPGGDAGVIRVE 443 L +PN WV ++Y I G DA +R E Sbjct: 39 LYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFE 76 >1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Length = 324 Score = 28.2 bits (62), Expect = 6.7 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 6/37 (16%) Query: 639 AEMTISSA--KGMDIILPIEIEKDPKPFLFGEDQGRY 673 A+MT+ A + I E++ DP +FGED G Sbjct: 1 AQMTMVQAITDALRI----ELKNDPNVLIFGEDVGVN 33 >3cnc_A Fiber protein; adenovirus fiber KNOB, viral protein; 2.40A {Human adenovirus 16} Length = 220 Score = 28.0 bits (62), Expect = 7.1 Identities = 14/94 (14%), Positives = 24/94 (25%), Gaps = 19/94 (20%) Query: 404 KLLSSPNLSSRRWVYEQYDTMIQSNSIQLPGGDAGVIRVEGHETKALAF--SSDVTPRYV 461 ++++ + ++ M T A F S+ P Sbjct: 99 QIITYLSSLKSNLNFKDNQNMATGTI-----------------TSAKGFMPSTTAYPFIT 141 Query: 462 KADPFEGTKQAVAECWRNIIATGAKPLAITDNLN 495 A EC+ PL +T LN Sbjct: 142 YATETLNEDYIYGECYYKSTNGTLFPLKVTVTLN 175 >1o22_A Orphan protein TM0875; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics, unknown function; 2.00A {Thermotoga maritima} SCOP: d.238.1.1 Length = 170 Score = 28.1 bits (62), Expect = 7.2 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Query: 324 QHKAQEILNKWGLHFSIIGITTNDKLF---RVIHRGEEVANLPIKALSDE 370 + K +EI N+ G+ + ++F V+ GEEV + IKAL+ + Sbjct: 34 EKKMKEIFNETGVSLEPVNSELIGRIFLKISVLEEGEEVPSFAIKALTPK 83 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.136 0.407 Gapped Lambda K H 0.267 0.0518 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 6,416,597 Number of extensions: 302647 Number of successful extensions: 930 Number of sequences better than 10.0: 1 Number of HSP's gapped: 873 Number of HSP's successfully gapped: 44 Length of query: 737 Length of database: 5,693,230 Length adjustment: 99 Effective length of query: 638 Effective length of database: 3,293,074 Effective search space: 2100981212 Effective search space used: 2100981212 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (27.4 bits)