BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780970|ref|YP_003065383.1|
phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter
asiaticus str. psy62]
(737 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus
Liberibacter asiaticus str. psy62]
Length = 737
Score = 1525 bits (3948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 737/737 (100%), Positives = 737/737 (100%)
Query: 1 MSKPSPILEILTAHGLTKDECDQIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTL 60
MSKPSPILEILTAHGLTKDECDQIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTL
Sbjct: 1 MSKPSPILEILTAHGLTKDECDQIIHILKRQPTLTEIGIISAMWNEHCSYKSSKKWLRTL 60
Query: 61 PTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG 120
PTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG
Sbjct: 61 PTTGKHVIQGPGENAGVVDIGGGDCVVFKMESHNHPSYIEPYQGAATGVGGILRDIFTMG 120
Query: 121 ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN 180
ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN
Sbjct: 121 ARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPTVGGEVEFLPCYNNNIIVN 180
Query: 181 TFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG 240
TFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG
Sbjct: 181 TFAAGIAKTNAIFSSKARGIGLPLVYLGAKTGRDGIGGASMASEEFGENIAKKRPTVQVG 240
Query: 241 DPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEG 300
DPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEG
Sbjct: 241 DPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMGNQGNLGITLDLDKVPTCEEG 300
Query: 301 MTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVA 360
MTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVA
Sbjct: 301 MTAYEMMLSESQERMLMILNPEKQHKAQEILNKWGLHFSIIGITTNDKLFRVIHRGEEVA 360
Query: 361 NLPIKALSDEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQ 420
NLPIKALSDEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQ
Sbjct: 361 NLPIKALSDEAPEYDRAWCEPITIPPSNPQLLCSDEDCTKSLLKLLSSPNLSSRRWVYEQ 420
Query: 421 YDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNI 480
YDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNI
Sbjct: 421 YDTMIQSNSIQLPGGDAGVIRVEGHETKALAFSSDVTPRYVKADPFEGTKQAVAECWRNI 480
Query: 481 IATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQ 540
IATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQ
Sbjct: 481 IATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDFPIVSGNVSFYNETNGQ 540
Query: 541 SIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPP 600
SIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPP
Sbjct: 541 SIFPTPTIAGVGILPDYSLMTRIDSAHEGDLILMIGNDGCHLDCSMYSLECASSNIGPPP 600
Query: 601 KVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKD 660
KVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKD
Sbjct: 601 KVDCHLEKNHGFFVLSMINAKKITACHDISTGGLIITLAEMTISSAKGMDIILPIEIEKD 660
Query: 661 PKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGSTLSIHNILNIPVATL 720
PKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGSTLSIHNILNIPVATL
Sbjct: 661 PKPFLFGEDQGRYVVCISPENQDLVMSEANNKNIPLRYLGKVSGSTLSIHNILNIPVATL 720
Query: 721 QTKYESWFPEFISESTV 737
QTKYESWFPEFISESTV
Sbjct: 721 QTKYESWFPEFISESTV 737
>gi|254780887|ref|YP_003065300.1| hypothetical protein CLIBASIA_03920 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 86
Score = 26.9 bits (58), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 342 GITTNDKLFRVIHRGEEVANLPIKAL 367
++TNDK F RG ++LPIK L
Sbjct: 60 SVSTNDKPFTYPSRGASSSDLPIKGL 85
>gi|254780446|ref|YP_003064859.1| hypothetical protein CLIBASIA_01655 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 171
Score = 26.9 bits (58), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 12/48 (25%)
Query: 663 PFLFGEDQGRYVVCISPENQDLVMSE----------ANNKNIPLRYLG 700
P L+ EDQ + V+C S E + VMS N KN+P +LG
Sbjct: 73 PCLYKEDQEQVVLCSSSE--ECVMSRWNAAVHTKEILNEKNMPYPFLG 118
>gi|254780233|ref|YP_003064646.1| GTP-binding protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 624
Score = 26.6 bits (57), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 465 PFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREACQILDF 524
P TK V + + G +P+ + + ++ + +E++ + + LDF
Sbjct: 119 PMPQTKFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174
Query: 525 PIVSGNVSF 533
PI+ G+ F
Sbjct: 175 PILYGSGRF 183
>gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 424
Score = 25.4 bits (54), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 464 DPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREAC 519
+PF+G + ++ T P I N+ FG+PE + +M + + I +C
Sbjct: 257 NPFQGV------LFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDILEILNSC 306
>gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus Liberibacter asiaticus str. psy62]
Length = 469
Score = 25.4 bits (54), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 109 VGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPT 162
V + D+F + ++ +NS+ + I + +S + G + SF VPT
Sbjct: 201 VKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPT 254
>gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 430
Score = 24.6 bits (52), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 327 AQEILNKWGLHFSIIGITTND 347
A+EIL + LH+ ++ + T D
Sbjct: 306 AEEILKRLDLHYRVVSLCTGD 326
>gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 357
Score = 24.6 bits (52), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 14/113 (12%)
Query: 473 VAECWRNIIATGAKPLAITDNLNFG--NPEKEEIMGQFVHSVKGIREACQILDFPIVSGN 530
VA C +I+ GA+PL D L NP+ Q +KGI C ++ G
Sbjct: 91 VAMCVNDILTHGAEPLFFLDYLATSQLNPD------QATSIIKGIAAGCCQAGCALIGGE 144
Query: 531 VSFYNETNGQSIFPTPTIAG--VGILPDYSLMTRIDSAHEGDLILMIGNDGCH 581
+ E G +AG VG + L++ ++ GDLIL + + G H
Sbjct: 145 TA---EMPGLYHDRDYDLAGFAVGAVERKELLSP-ENVCAGDLILGLPSSGLH 193
>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 24.3 bits (51), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 227 GENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMG-----N 281
G + KKRP++ +GD L E++ D I G A + + M +
Sbjct: 20 GLDAVKKRPSMYIGDTDGESGLHHMIYEVL--DNAIDESLEGYADIITVTLNMDGSCTVS 77
Query: 282 QGNLGITLDLDKVPTCEEGMTAYEMMLSE 310
GI DL K EEG++A E++++
Sbjct: 78 DNGRGIPTDLHK----EEGISAAEVIMTR 102
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,349
Number of Sequences: 1233
Number of extensions: 20802
Number of successful extensions: 57
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 11
length of query: 737
length of database: 328,796
effective HSP length: 81
effective length of query: 656
effective length of database: 228,923
effective search space: 150173488
effective search space used: 150173488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)