HHsearch alignment for GI: 254780971 and conserved domain: COG0505
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism].
Probab=97.58 E-value=0.0017 Score=43.15 Aligned_cols=163 Identities=23% Similarity=0.339 Sum_probs=88.0
Q ss_pred HHHHHHHHHHCCCCEEEEECC-C-CC--CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Q ss_conf 999999998549963998215-4-64--4564789972873454311406775200212122332205971786064031
Q gi|254780971|r 15 NDMIKAITKIIGQSPILVWQS-D-TD--IPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQ 90 (219)
Q Consensus 15 ~e~~~A~~~~~~~~~~~v~~~-~-~~--l~~~d~lvipGGFSygD~l~aG~i~~~~~~~~~i~~~~~~g~~vLGICNGfQ 90 (219)
T Consensus 191 ~nIlr~L~~-rg~~vtVVP~~t~~eeIl~~~pDGiflSNGP--GDP------~~~~~~i~~ik~l~~~~iPifGICLGHQ 261 (368)
T COG0505 191 RNILRELVK-RGCRVTVVPADTSAEEILALNPDGIFLSNGP--GDP------APLDYAIETIKELLGTKIPIFGICLGHQ 261 (368)
T ss_pred HHHHHHHHH-CCCEEEEECCCCCHHHHHHHCCCEEEEECCC--CCH------HHHHHHHHHHHHHHCCCCCEEEECHHHH
T ss_conf 779999997-7984999769899999985189979974899--880------6778999999998646898378868889
Q ss_pred HHEEC-CCHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHCCCCCEEEEEEECCCEEEEECHHHHHHHHHCCEEEEECCC
Q ss_conf 01000-00101101244332454225767525235776413799689986201330233086774115422503653168
Q gi|254780971|r 91 ILVEL-NLLPGILMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYAS 169 (219)
Q Consensus 91 iL~el-GLlPg~l~~N~s~rf~~r~~~~~v~~~~s~~~~~~~~~~~l~~piaHgEGrf~~~~~~l~~l~~~~~i~~~Y~d 169 (219)
T Consensus 262 llalA~Ga~------T~KmkFGHrG~NhPV--------~dl~tgrv~-IT-SQNHG-yaVd~~---s~~~~~-~vth~-- 318 (368)
T COG0505 262 LLALALGAK------TYKMKFGHRGANHPV--------KDLDTGRVY-IT-SQNHG-YAVDED---SLVETL-KVTHV-- 318 (368)
T ss_pred HHHHHCCCC------EEECCCCCCCCCCCC--------CCCCCCEEE-EE-ECCCC-EECCHH---HCCCCC-EEEEE--
T ss_conf 999866786------432036887789676--------316588089-99-46886-013822---327776-05898--
Q ss_pred CCCCC-CCCCCEEEEECCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHC
Q ss_conf 88889-88112668886999899984884343221006776289998642
Q gi|254780971|r 170 GTNPN-GSLHDIAGVINRRGNVLGMMPHPENIIEKFHGGIDGRGLFASLL 218 (219)
Q Consensus 170 ~~NPN-GS~~~IAgi~s~~G~vlgmMPHPER~~~~~~~~~dG~~~f~~~~ 218 (219)
T Consensus 319 --nlnDgT---vEGi~h~~~P~fSVQ~HPEAsPG----PhDt~ylFd~Fi 359 (368)
T COG0505 319 --NLNDGT---VEGIRHKDLPAFSVQYHPEASPG----PHDTRYLFDEFI 359 (368)
T ss_pred --ECCCCC---CCCEECCCCCEEEECCCCCCCCC----CCCCHHHHHHHH
T ss_conf --179997---00245279863787148999989----864477999999