HHsearch alignment for GI: 254780971 and conserved domain: COG0693
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only].
Probab=97.86 E-value=9.4e-05 Score=51.26 Aligned_cols=94 Identities=28% Similarity=0.440 Sum_probs=65.1
Q ss_pred CEEEEEECCCCCCHHHH---HHHHHHHCCCCEEEEECCC----------------------CCCCCCCEEEECCCCCCCC
Q ss_conf 96899844970647999---9999985499639982154----------------------6445647899728734543
Q gi|254780971|r 1 MKTAIVQIPGLNRDNDM---IKAITKIIGQSPILVWQSD----------------------TDIPDVDLIVIPGGFSYGD 55 (219)
Q Consensus 1 mkvaVl~~pGsNcd~e~---~~A~~~~~~~~~~~v~~~~----------------------~~l~~~d~lvipGGFSygD 55 (219)
T Consensus 3 ~~i~i~~~~g~e-~~E~~~p~~~l~~-ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~ 80 (188)
T COG0693 3 KKIAILLADGFE-DLELIVPYDVLRR-AGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPE 80 (188)
T ss_pred CEEEEEECCCCC-HHHHHHHHHHHHH-CCCEEEEEEECCCCCCEEECCCCEEEECCHHCCCCCCCCCCEEEECCCCCCHH
T ss_conf 327998348953-5443029999997-79707999752676541644786078321211657813598999889975232
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHEECC-CHHHH
Q ss_conf 11406775200212122332205971786064031010000-01011
Q gi|254780971|r 56 YLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELN-LLPGI 101 (219)
Q Consensus 56 ~l~aG~i~~~~~~~~~i~~~~~~g~~vLGICNGfQiL~elG-LlPg~ 101 (219)
T Consensus 81 ~~~-----~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ll~g~ 122 (188)
T COG0693 81 YLR-----PDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGR 122 (188)
T ss_pred HCC-----CCHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCC
T ss_conf 213-----517899999999976998999846889987476831484