HHsearch alignment for GI: 254780971 and conserved domain: COG0693

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only].
Probab=97.86  E-value=9.4e-05  Score=51.26  Aligned_cols=94  Identities=28%  Similarity=0.440  Sum_probs=65.1

Q ss_pred             CEEEEEECCCCCCHHHH---HHHHHHHCCCCEEEEECCC----------------------CCCCCCCEEEECCCCCCCC
Q ss_conf             96899844970647999---9999985499639982154----------------------6445647899728734543
Q gi|254780971|r    1 MKTAIVQIPGLNRDNDM---IKAITKIIGQSPILVWQSD----------------------TDIPDVDLIVIPGGFSYGD   55 (219)
Q Consensus         1 mkvaVl~~pGsNcd~e~---~~A~~~~~~~~~~~v~~~~----------------------~~l~~~d~lvipGGFSygD   55 (219)
T Consensus         3 ~~i~i~~~~g~e-~~E~~~p~~~l~~-ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~   80 (188)
T COG0693           3 KKIAILLADGFE-DLELIVPYDVLRR-AGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPE   80 (188)
T ss_pred             CEEEEEECCCCC-HHHHHHHHHHHHH-CCCEEEEEEECCCCCCEEECCCCEEEECCHHCCCCCCCCCCEEEECCCCCCHH
T ss_conf             327998348953-5443029999997-79707999752676541644786078321211657813598999889975232


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHEECC-CHHHH
Q ss_conf             11406775200212122332205971786064031010000-01011
Q gi|254780971|r   56 YLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELN-LLPGI  101 (219)
Q Consensus        56 ~l~aG~i~~~~~~~~~i~~~~~~g~~vLGICNGfQiL~elG-LlPg~  101 (219)
T Consensus        81 ~~~-----~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ll~g~  122 (188)
T COG0693          81 YLR-----PDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGR  122 (188)
T ss_pred             HCC-----CCHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCC
T ss_conf             213-----517899999999976998999846889987476831484