HHsearch alignment for GI: 254780971 and conserved domain: COG4977

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].

Probab=94.42  E-value=0.04  Score=34.45  Aligned_cols=92  Identities=24%  Similarity=0.526  Sum_probs=56.3

Q ss_pred             EEEEEECCC-CCCHHH----HHHHHHHHCCCCEEEEEC---CC------------------CCCCCCCEEEECCCCCCCC
Q ss_conf             689984497-064799----999999854996399821---54------------------6445647899728734543
Q gi|254780971|r    2 KTAIVQIPG-LNRDND----MIKAITKIIGQSPILVWQ---SD------------------TDIPDVDLIVIPGGFSYGD   55 (219)
Q Consensus         2 kvaVl~~pG-sNcd~e----~~~A~~~~~~~~~~~v~~---~~------------------~~l~~~d~lvipGGFSygD   55 (219)
T Consensus        12 ~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~-~w~~~s~~g~~V~ss~G~~i~~d~~~~~~~~~~~v~v~~g~--~~   88 (328)
T COG4977          12 RFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLY-VWSIVSADGGPVRSSSGLSIAPDGGLEAAPPIDILPVCGGL--GP   88 (328)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC-CEEEEECCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCC--CC
T ss_conf             7899982897325655317899986664146533-34886168887636898267168764556763299980687--75


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHEECCCHHH
Q ss_conf             114067752002121223322059717860640310100000101
Q gi|254780971|r   56 YLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPG  100 (219)
Q Consensus        56 ~l~aG~i~~~~~~~~~i~~~~~~g~~vLGICNGfQiL~elGLlPg  100 (219)
T Consensus        89 ----~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aGLLdG  129 (328)
T COG4977          89 ----ERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEAGLLDG  129 (328)
T ss_pred             ----CCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCC
T ss_conf             ----44456499999999998469958886086999997115379