HHsearch results for GI: 254780971 and protein with PDBid: 1vco_A

Probab=99.07  E-value=7.6e-09  Score=76.02  Aligned_cols=178  Identities=21%  Similarity=0.318  Sum_probs=105.1

Q ss_pred             HHHHHHHH---CCCCEEEEECCCC---------CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             99999985---4996399821546---------44564789972873454311406775200212122332205971786
Q gi|254780971|r   17 MIKAITKI---IGQSPILVWQSDT---------DIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMG   84 (219)
Q Consensus        17 ~~~A~~~~---~~~~~~~v~~~~~---------~l~~~d~lvipGGFSygD~l~aG~i~~~~~~~~~i~~~~~~g~~vLG   84 (219)
                      ...||..+   .+....+.|.+.+         .|.++|++++||||  |++-.-|+|.|       ++-.-+++.|-||
T Consensus       319 v~EAL~HAg~~~~~kv~i~wIdse~l~~~~~~~~L~~~dGIlVPGGF--G~RGiEGKI~A-------i~yARen~IPfLG  389 (550)
T 1vco_A          319 LLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGF--GVRGIEGKVRA-------AQYARERKIPYLG  389 (550)
T ss_dssp             HHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCC--SSTTHHHHHHH-------HHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHCCCEEEECCCC--CCCCHHHHHHH-------HHHHHHCCCCCCC
T ss_conf             98899887775397058999851033303389986058838941778--76774589999-------9989873998420


Q ss_pred             ECCCHHHHE-E-----CCCH--------HHH------HCCC------CCC--CEEEEEEEEEECCCHHHHHHHCCCCCEE
Q ss_conf             064031010-0-----0001--------011------0124------433--2454225767525235776413799689
Q gi|254780971|r   85 ICNGFQILV-E-----LNLL--------PGI------LMRN------CSL--KFVCKQVLLEVVNSNTAFTKSYKMNQII  136 (219)
Q Consensus        85 ICNGfQiL~-e-----lGLl--------Pg~------l~~N------~s~--rf~~r~~~~~v~~~~s~~~~~~~~~~~l  136 (219)
                      ||-|||+++ |     +||=        |.+      +++.      .-+  |.-...+.++   ..|...+-+....+ 
T Consensus       390 ICLGmQ~avIEfARNVlgl~dAnStEfd~~t~~pVI~lm~eq~~~~~~GGTMRLG~~~~~l~---~gS~a~~iYg~~~I-  465 (550)
T 1vco_A          390 ICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIK---PGTLLHRLYGKEEV-  465 (550)
T ss_dssp             ETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEEC---TTSHHHHHHCCSEE-
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECHHHCCCCCCCCCCCCCCEEEEEC---CCCHHHHHHCCCCC-
T ss_conf             01224699999999844999998557799999977986546321577554316676578856---88868997589856-


Q ss_pred             EEEEECCCEEEEECHHHHHHHHHCCEEEEECCCCCCCCCC--CCC-EEEEECCC-CCEEEECCCCHHHCCCCCCCCCHHH
Q ss_conf             9862013302330867741154225036531688888988--112-66888699-9899984884343221006776289
Q gi|254780971|r  137 KCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGS--LHD-IAGVINRR-GNVLGMMPHPENIIEKFHGGIDGRG  212 (219)
Q Consensus       137 ~~piaHgEGrf~~~~~~l~~l~~~~~i~~~Y~d~~NPNGS--~~~-IAgi~s~~-G~vlgmMPHPER~~~~~~~~~dG~~  212 (219)
                        .=.| --||-++.+..++|+++|.+.--.    +|++.  ..+ +..|=-++ --.+|.+.|||....+..    .-+
T Consensus       466 --~ERH-RHRYEvN~~y~~~le~~Gl~~sG~----spd~r~~~~~lvEiiEl~~HPfFvg~QFHPEf~SrP~~----PhP  534 (550)
T 1vco_A          466 --LERH-RHRYEVNPLYVDGLERAGLVVSAT----TPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMR----PSP  534 (550)
T ss_dssp             --EEEE-EESEEECHHHHHHHHHHTEEEEEE----CCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBTTB----CCH
T ss_pred             --CCCC-CCCCCCCHHHHHHHHHCCCEEEEE----CCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCC----CCC
T ss_conf             --3005-766432989999999789899997----88766567880799983899837886687412489999----881


Q ss_pred             HHHHHC
Q ss_conf             998642
Q gi|254780971|r  213 LFASLL  218 (219)
Q Consensus       213 ~f~~~~  218 (219)
                      +|.++|
T Consensus       535 LF~~fi  540 (550)
T 1vco_A          535 PFVGFV  540 (550)
T ss_dssp             HHHHHH
T ss_pred             CHHHHH
T ss_conf             399999