HHsearch results for GI: 254780971 and protein with PDBid: 3fij_A
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.37 E-value=5.1e-12 Score=96.31 Aligned_cols=177 Identities=23% Similarity=0.343 Sum_probs=98.0
Q ss_pred HHHHHHHHCCCCEEEEECCC-C----CCCCCCEEEECCCCC-----CCCCCCH--HHH-HHHHH-HHHHHHHHHHCCCEE
Q ss_conf 99999985499639982154-6----445647899728734-----5431140--677-52002-121223322059717
Q gi|254780971|r 17 MIKAITKIIGQSPILVWQSD-T----DIPDVDLIVIPGGFS-----YGDYLRC--GAI-AARTP-VMQAIKKKAQQGIKV 82 (219)
Q Consensus 17 ~~~A~~~~~~~~~~~v~~~~-~----~l~~~d~lvipGGFS-----ygD~l~a--G~i-~~~~~-~~~~i~~~~~~g~~v 82 (219)
-.+|++++ |..++++...+ . .++.+|+|+||||-. ||+.... +.+ ..+.. -...++...++++|+
T Consensus 33 yv~~l~~a-Ga~pv~ip~~~~~~~~~~l~~~DGvll~GG~dv~p~~yg~~~~~~~~~~~~~Rd~~e~~li~~a~~~~~Pi 111 (254)
T 3fij_A 33 YVDAIQKV-GGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPI 111 (254)
T ss_dssp HHHHHHHH-TCEEEEECCCCGGGHHHHHHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHC-CCEEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999986-99899975898588998886569499658877875546877875458876556899999999999859988
Q ss_pred EEECCCHHHHEECCCHHHHHCCCCCC------------CEEEEEEEEEECCCHHHHHHHCCCCCEEEEEEECCCEEEEEC
Q ss_conf 86064031010000010110124433------------245422576752523577641379968998620133023308
Q gi|254780971|r 83 MGICNGFQILVELNLLPGILMRNCSL------------KFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGNYFID 150 (219)
Q Consensus 83 LGICNGfQiL~elGLlPg~l~~N~s~------------rf~~r~~~~~v~~~~s~~~~~~~~~~~l~~piaHgEGrf~~~ 150 (219)
||||-|||+|... +.|.+.++... ...-.|..+.+. ..|.+...+. + ...++..|..+
T Consensus 112 lGIC~G~Qll~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~-~~s~l~~~~~-~-~~~v~s~h~~~----- 181 (254)
T 3fij_A 112 FAICRGMQLVNVA--LGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIE-PTSELAKHHP-N-KKLVNSLHHQF----- 181 (254)
T ss_dssp EEETHHHHHHHHH--TTCCEESSGGGSSSCCCCCBCCSCTTSCCEEEEEC-TTSSGGGTCC-T-TEEECCBCSCE-----
T ss_pred EEECHHHHHHHHH--HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE-CCCHHHCCCC-C-CEEEEECCHHH-----
T ss_conf 9987518999999--58874234334567642346777622562489980-4750110478-7-43786122032-----
Q ss_pred HHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEECCCCC--EEEECCCCHHHCCCCCCCCCHHHHHHHHC
Q ss_conf 677411542250365316888889881126688869998--99984884343221006776289998642
Q gi|254780971|r 151 AKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVINRRGN--VLGMMPHPENIIEKFHGGIDGRGLFASLL 218 (219)
Q Consensus 151 ~~~l~~l~~~~~i~~~Y~d~~NPNGS~~~IAgi~s~~G~--vlgmMPHPER~~~~~~~~~dG~~~f~~~~ 218 (219)
.+++-+.-+|.... +.|. |++|-.++.. ++|.|.|||+... ...++.+||+++|
T Consensus 182 ---v~~l~~~~~v~A~s-----~dg~---ieaie~~~~p~f~~GvQfHPE~~~~---~~~~~~~lf~~FV 237 (254)
T 3fij_A 182 ---IKKLAPSFKVTART-----ADGM---IEAVEGDNLPSWYLGVQWHPELMFQ---TDPESEQLFQALV 237 (254)
T ss_dssp ---ESSCCSSEEEEEEE-----TTCC---EEEEEESSCSSCEEEESSCGGGTGG---GCHHHHHHHHHHH
T ss_pred ---HHCCCCCEEEEEEE-----CCCC---EEEEEECCCCCCEEEEECCCCCCCC---CCHHHHHHHHHHH
T ss_conf ---12057851899991-----8986---8999988999877999828813788---8813769999999