RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780971|ref|YP_003065384.1|
phosphoribosylformylglycinamidine synthase subunit I [Candidatus
Liberibacter asiaticus str. psy62]
(219 letters)
>1t3t_A Phosphoribosylformylglycinamidine synthase; PURL, FGAM synthetase,
PURS, PURQ, formyl glycinamide, ligase; HET: CYG ADP;
1.90A {Salmonella typhimurium} SCOP: a.5.10.1 c.23.16.1
d.284.1.2 d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1
Length = 1303
Score = 131 bits (329), Expect = 1e-31
Identities = 64/224 (28%), Positives = 93/224 (41%), Gaps = 29/224 (12%)
Query: 2 KTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSD-----TDIPDVDLIVIPGGFSYGDY 56
K A+++ G+N +M A + G I V SD + + +V GGFSYGD
Sbjct: 1049 KVAVLREQGVNSHVEMAAAFHRA-GFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDV 1107
Query: 57 LRCGAIAART-----PVMQAIKK-KAQQGIKVMGICNGFQILVELNLL-PG-----ILMR 104
L G A++ V + + +G+CNG Q++ L L PG +R
Sbjct: 1108 LGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVR 1167
Query: 105 NCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGN-YFIDAKGLAEIEKNNQI 163
N S +F + L+EV S + + + V+H +G D LA +E +
Sbjct: 1168 NHSDRFEARFSLVEVTQSPSLLLQGMV-GSQMPIAVSHGEGRVEVRDDAHLAALESKGLV 1226
Query: 164 VFRYASGT---------NPNGSLHDIAGVINRRGNVLGMMPHPE 198
RY NPNGS + I V G V MMPHPE
Sbjct: 1227 ALRYVDNFGKVTETYPANPNGSPNGITAVTTENGRVTIMMPHPE 1270
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure,
ATP-binding, cytoplasm, ligase, nucleotide-binding,
purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga
maritima}
Length = 213
Score = 125 bits (314), Expect = 7e-30
Identities = 97/218 (44%), Positives = 133/218 (61%), Gaps = 12/218 (5%)
Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60
+ +V PG N D D A+ +I G P V D + D +LI++PGGFSYGDYLR G
Sbjct: 3 PRACVVVYPGSNCDRDAYHAL-EINGFEPSYVGLDD-KLDDYELIILPGGFSYGDYLRPG 60
Query: 61 AIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120
A+AAR + I K A++G +MGICNGFQIL+E+ LL G L++N S KF+CK V L V
Sbjct: 61 AVAAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWVDLIVE 120
Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDI 180
N++T FT +++ + I+ P+AH G Y + +V RY + NGS I
Sbjct: 121 NNDTPFTNAFEKGEKIRIPIAHGFGRYVKI--------DDVNVVLRYV--KDVNGSDERI 170
Query: 181 AGVINRRGNVLGMMPHPENIIEKFHGGIDGRGLFASLL 218
AGV+N GNV G+MPHPE +E+ GG DG+ +F S+L
Sbjct: 171 AGVLNESGNVFGLMPHPERAVEELIGGEDGKKVFQSIL 208
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2,
predicted glutamine amidotransferase, PSI; HET: MSE;
1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Length = 219
Score = 79.8 bits (196), Expect = 5e-16
Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 27/198 (13%)
Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60
MK ++ + G R+ ++AI G ++V +S+ + +D +V+PGG S
Sbjct: 24 MKIGVLGLQGAVRE--HVRAIEAC-GAEAVIVKKSE-QLEGLDGLVLPGGEST----TMR 75
Query: 61 AIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120
+ R +M+ +K+ A G + G C G +L + + V +
Sbjct: 76 RLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYDEPHLGLMDITVERN------ 129
Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDI 180
+ + ++ V FI A + E ++ Y I
Sbjct: 130 --SFGRQRESFEAELSIKGVGDGFVGVFIRAPHIVEAGDGVDVLATYN---------DRI 178
Query: 181 AGVINRRGNVLGMMPHPE 198
R+G LG HPE
Sbjct: 179 VAA--RQGQFLGCSFHPE 194
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Length = 315
Score = 55.6 bits (133), Expect = 9e-09
Identities = 29/184 (15%), Positives = 52/184 (28%), Gaps = 16/184 (8%)
Query: 26 GQSPILVWQSDTD------IPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQG 79
G + V T+ ++ I+ PGG +A +
Sbjct: 65 GARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDY 124
Query: 80 IKVMGICNGFQILV-----ELNLLPGILMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQ 134
V G C GF+ L E L + L + N +
Sbjct: 125 FPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAV 184
Query: 135 IIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVINRRGNVLGMM 194
H + +++K ++ TN +G + I+ + + V G+
Sbjct: 185 EPLTANFHKWSLSVKNFTMNEKLKKFFNVL-----TTNTDGKIEFISTMEGYKYPVYGVQ 239
Query: 195 PHPE 198
HPE
Sbjct: 240 WHPE 243
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich,
rossmann fold, glutaminase; 1.73A {Bacillus subtilis}
SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Length = 196
Score = 53.7 bits (128), Expect = 3e-08
Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 27/198 (13%)
Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60
+ ++ + G R++ I AI G + ++V + + + +VD +++PGG S
Sbjct: 2 LTIGVLGLQGAVREH--IHAIEAC-GAAGLVVKRPE-QLNEVDGLILPGGEST----TMR 53
Query: 61 AIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120
+ M+ +++ A QG + G C G IL + V + V
Sbjct: 54 RLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGSDNPHLGLLNVVVERNSFGRQV 113
Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDI 180
+S A +++ E N +IV
Sbjct: 114 DSFEADLTIKGLDEPFTGVFIRAPHILEAGENVEVLSEHNGRIV---------------- 157
Query: 181 AGVINRRGNVLGMMPHPE 198
++G LG HPE
Sbjct: 158 ---AAKQGQFLGCSFHPE 172
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein
structure initiative, midwest center for structural
genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 175
Score = 45.4 bits (107), Expect = 1e-05
Identities = 14/87 (16%), Positives = 32/87 (36%)
Query: 14 DNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIK 73
D IK + ++ ++ + D +V G + + + +M+ IK
Sbjct: 39 DTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIK 98
Query: 74 KKAQQGIKVMGICNGFQILVELNLLPG 100
++G ++G C G + + G
Sbjct: 99 TFGEKGKMMIGHCAGAMMFDFTGITKG 125
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
substrate tunnel; HET: 143; 2.10A {Saccharomyces
cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A*
1ox6_A 1ox4_A
Length = 555
Score = 44.6 bits (105), Expect = 2e-05
Identities = 37/206 (17%), Positives = 68/206 (33%), Gaps = 34/206 (16%)
Query: 18 IKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQ 77
AI + + ++ D +I +++PG +YG + I++ +
Sbjct: 21 TNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGH---FVDNLFNRGFEKPIREYIE 77
Query: 78 QGIKVMGICNGFQILVE----------LNLLPGILMRNCSLKFVCKQVLLEVVNSNTAFT 127
G +MGI G Q L LN + L R F + + + N+
Sbjct: 78 SGKPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSR-----FDDSEKPVPEIGWNSCIP 132
Query: 128 KSYKMNQIIKCPVAH--HDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVIN 185
+ + H ++++ +E + + GS IA V
Sbjct: 133 SENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGWKI-----AKAKYGSEEFIAAV-- 185
Query: 186 RRGNVLGMMPHPE-------NIIEKF 204
+ N+ HPE N+IE F
Sbjct: 186 NKNNIFATQFHPEKSGKAGLNVIENF 211
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel,
alpha/beta three layer sandwich, lyase; HET: 5RP; 2.90A
{Thermotoga maritima}
Length = 208
Score = 44.8 bits (105), Expect = 2e-05
Identities = 40/198 (20%), Positives = 75/198 (37%), Gaps = 26/198 (13%)
Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60
MK ++ + G R++ ++A+ K+ G ++V + + VD +++PGG S
Sbjct: 21 MKIGVLGVQGDVREH--VEALHKL-GVETLIVKLPE-QLDMVDGLILPGGEST----TMI 72
Query: 61 AIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120
I + + + ++ G+ V C G +L + V +
Sbjct: 73 RILKEMDMDEKLVERINNGLPVFATCAGVILLAKRIKNYSQEKLGVLDITVER---NAYG 129
Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDI 180
+F ++ + K P FI A + E KN +I+ Y +D
Sbjct: 130 RQVESFETFVEIPAVGKDPFRA----IFIRAPRIVETGKNVEILATYD---------YDP 176
Query: 181 AGVINRRGNVLGMMPHPE 198
V + GN+L HPE
Sbjct: 177 VLV--KEGNILACTFHPE 192
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.23.16.1
Length = 200
Score = 42.8 bits (100), Expect = 6e-05
Identities = 31/202 (15%), Positives = 69/202 (34%), Gaps = 28/202 (13%)
Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60
MK ++ N + KA+ G S + Q + DL+V+PG +G
Sbjct: 3 MKALLIDYGSGNLRS-AAKALEAA-GFSVAVA-QDPKAHEEADLLVLPGQGHFGQ---VM 56
Query: 61 AIAARTPVMQAIKKKAQQGIKVMGICNGFQILV----ELNLLPGILMRNCSLKFVCKQVL 116
+ ++ +++ ++G+ +GIC G Q+L E + G+ + ++ +
Sbjct: 57 RAFQESGFVERVRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRV 116
Query: 117 LEVVNSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGS 176
++ + F ++ A+ + + Y
Sbjct: 117 PQMGWNALEFGGAFAPLTGRHFYFANSYY---------GPLTPYSLGKGEYEG------- 160
Query: 177 LHDIAGVINRRGNVLGMMPHPE 198
++ + N+L HPE
Sbjct: 161 -TPFTALL-AKENLLAPQFHPE 180
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and
ferritin-like domains; YP_324989.1, structural genomics;
HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Length = 365
Score = 42.6 bits (100), Expect = 6e-05
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 35 SDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVE 94
++ + D +VIPGG + D +R ++ +++ +QG V +C+G Q+L+E
Sbjct: 67 TEAIASEFDAVVIPGGMA-PDKMRRNP-----NTVRFVQEAMEQGKLVAAVCHGPQVLIE 120
Query: 95 LNLLPG 100
+LL G
Sbjct: 121 GDLLRG 126
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria,
transferase; HET: PG4; 1.62A {Plasmodium falciparum}
SCOP: c.23.16.1
Length = 227
Score = 42.2 bits (98), Expect = 9e-05
Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 11/202 (5%)
Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSD-TDIPDVDLIVIPGGFSYGDYLRC 59
+ ++ + G + I K+ S ++ + D+ D +VIPGG S RC
Sbjct: 4 ITIGVLSLQGDFEPH--INHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVR-RC 60
Query: 60 GAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEV 119
A T + + G C G +L + + + +
Sbjct: 61 CAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITIC 120
Query: 120 VNSNTAFTKSYKMNQIIKCPVAHHDG---NYFIDAKGLAEIEKNNQIVFRYASGTNPNGS 176
N + S+ + I + I A + EI + V A+ ++ +
Sbjct: 121 RNFYGSQNDSFICSLNIISDSSAFKKDLTAACIRAPYIREILSDEVKVL--ATFSHESYG 178
Query: 177 LHDIAGVINRRGNVLGMMPHPE 198
+ IA V + N LG + HPE
Sbjct: 179 PNIIAAV--EQNNCLGTVFHPE 198
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II,
structural genomics, protein structure initiative; 2.30A
{Listeria innocua}
Length = 254
Score = 41.4 bits (96), Expect = 1e-04
Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 33/222 (14%)
Query: 15 NDMIKAITKIIGQSPILVWQSDTDIPD-----VDLIVIPGGFSYGDYLRCGAIAARTPV- 68
+ AI K+ G PI + D VD +++ GG L +
Sbjct: 31 QRYVDAIQKV-GGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAY 89
Query: 69 --------MQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120
+ ++ G + IC G Q++ +L QV + +
Sbjct: 90 FPPRDSYEIALVRAALDAGKPIFAICRGMQLVNV--------ALGGTLYQDISQVETKAL 141
Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHD- 179
+ + I P + ++ ++Q + + A D
Sbjct: 142 QHLQRVDEQLGSHTIDIEPTSELAKHHPNKKL---VNSLHHQFIKKLAPSFKVTARTADG 198
Query: 180 -IAGVI--NRRGNVLGMMPHPENIIEKFHGGIDGRGLFASLL 218
I V N LG+ HPE + F + LF +L+
Sbjct: 199 MIEAVEGDNLPSWYLGVQWHPELM---FQTDPESEQLFQALV 237
>1o1y_A Conserved hypothetical protein TM1158; structural genomics, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.70A {Thermotoga maritima} SCOP:
c.23.16.1
Length = 239
Score = 39.7 bits (92), Expect = 6e-04
Identities = 33/188 (17%), Positives = 60/188 (31%), Gaps = 34/188 (18%)
Query: 38 DIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNL 97
+ + L+V+ GG Y Q I++ ++ I +GIC G Q+L ++
Sbjct: 54 PLEEYSLVVLLGG--YMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKVL- 110
Query: 98 LPGILMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEI 157
G + +E V+ N F + ++ + D A +
Sbjct: 111 --GASVYRGKNGEEIGWYFVEKVSDNKFFREFPDRLRVFQWHGDTFDLPR--RATRVFTS 166
Query: 158 EKNNQIVFRYASGTNPNGSLHDIAGVINRRGNVLGMMPHPE-------NIIEKFHGGIDG 210
EK F Y G +G+ H E IE + ++
Sbjct: 167 EKYENQGFVY--------------------GKAVGLQFHIEVGARTMKRWIEAYKDELEK 206
Query: 211 RGLFASLL 218
+ + LL
Sbjct: 207 KKIDPRLL 214
>1gpw_B Amidotransferase HISH; lyase/transferase, complex
(lyase/transferase), histidine biosynthesis,
glutaminase, glutamine amidotransferase; 2.4A
{Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A
Length = 201
Score = 39.5 bits (91), Expect = 6e-04
Identities = 29/200 (14%), Positives = 66/200 (33%), Gaps = 22/200 (11%)
Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQ--SDTDIPDVDLIVIPGGFSYGDYLR 58
M+ I+ + N N + + + + + + DL+ IPG +G+
Sbjct: 1 MRIGIISVGPGNIMN-LYRGVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGE--- 56
Query: 59 CGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLE 118
++ ++K + V+G+C G Q+L E + + ++ ++
Sbjct: 57 GMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSR 116
Query: 119 VVNSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLH 178
+ +K H + + + + + +F
Sbjct: 117 RLPHMGWNEVIFKDTFPNGYYYFVHTYRAVCEEEHVLGTTEYDGEIF------------- 163
Query: 179 DIAGVINRRGNVLGMMPHPE 198
+ V R+G +LG HPE
Sbjct: 164 -PSAV--RKGRILGFQFHPE 180
>3bhn_A THIJ/PFPI domain protein; YP_001094981.1, DJ-1 like protein,
DJ-1/PFPI family, structural genomics, joint center for
structural genomics; HET: MSE; 1.76A {Shewanella loihica
pv-4}
Length = 236
Score = 38.5 bits (89), Expect = 0.001
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 29 PILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNG 88
+ +++ + D+++I G+ + + K + IC G
Sbjct: 68 TVKTDGHVSEVKEQDVVLITSGYRGIPAAL------QDENFMSALKLDPSRQLIGSICAG 121
Query: 89 FQILVELNLLPGILMRNC 106
+L EL LL G +
Sbjct: 122 SFVLHELGLLKGKKLTTN 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 37.6 bits (87), Expect = 0.002
Identities = 46/217 (21%), Positives = 62/217 (28%), Gaps = 103/217 (47%)
Query: 11 LNRDNDMIKAITKIIGQS-PILVWQSDTD-IPDVD-LIVIP------G------------ 49
L R + K+ Q IL W + PD D L+ IP G
Sbjct: 198 LIRTTLDAE---KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 50 --GFSYGDYLR---CGA--------IAARTPVMQAI---------KKKAQQGIKVMGICN 87
GF+ G+ LR GA A AI ++ I V+
Sbjct: 255 LLGFTPGE-LRSYLKGATGHSQGLVTAV------AIAETDSWESFFVSVRKAITVL---- 303
Query: 88 GFQILVE-------LNLLPGIL-------------M---RNCSLKFV------C------ 112
F I V +L P IL M N + + V
Sbjct: 304 -FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 113 -KQVLLEVVNSNTAF-----TKS-YKMNQI---IKCP 139
KQV + +VN +S Y +N K P
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
>3efe_A THIJ/PFPI family protein; structural genomics, csgid, center for
structural genomics of infectious diseases, chaperone;
2.30A {Bacillus anthracis}
Length = 212
Score = 37.4 bits (86), Expect = 0.003
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 35 SDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVE 94
+ + DL+++PGG + P+++ I + + G V IC L
Sbjct: 68 DECTLESKDLLILPGGT-------TWSEEIHQPILERIGQALKIGTIVAAICGATDALAN 120
Query: 95 LNLLPG 100
+ L
Sbjct: 121 MGYLDT 126
>3l83_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2,
protein structure initiative; 1.50A {Methylobacillus
flagellatus}
Length = 250
Score = 37.1 bits (85), Expect = 0.004
Identities = 21/161 (13%), Positives = 44/161 (27%), Gaps = 27/161 (16%)
Query: 38 DIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNL 97
+I D + + GG + ++ I+ Q + V+G C G Q+L +
Sbjct: 45 EIRDCSGLAMMGG-PMSANDDLPWMP---TLLALIRDAVAQRVPVIGHCLGGQLLAKAM- 99
Query: 98 LPGILMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEI 157
G + + + + + V + + + + F G I
Sbjct: 100 -GGEVTDSPHAEIGWVRAWPQHVPQALEW-----LGTWDELELFEWHYQTFSIPPGAVHI 153
Query: 158 EKNNQIVFRYASGTNPNGSLHDIAGVINRRGNVLGMMPHPE 198
++ H +G H E
Sbjct: 154 LRSE----------------HCANQAYVLDDLHIGFQCHIE 178
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET:
HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Length = 715
Score = 36.9 bits (85), Expect = 0.004
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 5/66 (7%)
Query: 35 SDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVE 94
VD I IPGG + L + I++ + ++ +
Sbjct: 589 EGFRSTMVDAIFIPGGAKAAETLS-----KNGRALHWIREAFGHLKAIGATGEAVDLVAK 643
Query: 95 LNLLPG 100
LP
Sbjct: 644 AIALPQ 649
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family);
amidotranferase-like, structural genomics, PSI; 2.00A
{Clostridium acetobutylicum}
Length = 211
Score = 34.9 bits (80), Expect = 0.012
Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 29 PILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNG 88
+ D ++ +PGG + + + I ++ ++ +C G
Sbjct: 53 RVETSLYTRDENIEKILFVPGGSGTREKVNDDN------FINFIGNMVKESKYIISVCTG 106
Query: 89 FQILVELNLLPG 100
+L + +L G
Sbjct: 107 SALLSKAGILNG 118
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics,
unknown function; 1.65A {Escherichia coli} SCOP:
c.23.16.2 PDB: 1oy1_A
Length = 232
Score = 33.1 bits (75), Expect = 0.051
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 35 SDTDIPDVDLIVIPGGFSYGDYLRCGAIAAR-----TPVMQAIKKKAQQGIKVMGICNGF 89
+ D ++D +++PGGF L A + + Q G + +C
Sbjct: 84 AQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAP 143
Query: 90 QILVELNLLPG 100
+L ++ P
Sbjct: 144 AMLPKIFDFPL 154
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2;
HET: MSE; 1.30A {Methylobacillus flagellatus} PDB:
3l83_A*
Length = 250
Score = 33.2 bits (75), Expect = 0.051
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 38 DIPDVDLIVIPGG--FSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVE 94
+I D + + GG + D ++ I+ Q + V+G C G Q+L +
Sbjct: 45 EIRDCSGLAMMGGPMSANDDLPWM------PTLLALIRDAVAQRVPVIGHCLGGQLLAK 97
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, ALS collaborative crystallography,
isoprenoid biosynthesis; 1.90A {Ehrlichia chaffeensis}
Length = 242
Score = 32.6 bits (74), Expect = 0.064
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 35 SDTDIPDVDLIVIPGGFSYGDYLR------CGAIAARTPVMQAIKKKAQQGIKVMGICNG 88
+ + D++VIPGG+ A+++ + +C
Sbjct: 101 EQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCIS 160
Query: 89 FQILVE-LNLLPG 100
++V L +
Sbjct: 161 PAVVVALLKDIAK 173
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A
{Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A
1ons_A 1izz_A
Length = 291
Score = 32.7 bits (74), Expect = 0.065
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 32 VWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQI 91
V S + I +PGG L V A++ + V+ +C+G
Sbjct: 136 VVASLNADSEYAAIFVPGGHGALIGLPESQ-----DVAAALQWAIKNDRFVISLCHGPAA 190
Query: 92 LVEL 95
+ L
Sbjct: 191 FLAL 194
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved
protein, structural genomics, NPPSFA; 1.90A
{Methanocaldococcus jannaschii DSM2661}
Length = 186
Score = 32.2 bits (72), Expect = 0.092
Identities = 32/198 (16%), Positives = 62/198 (31%), Gaps = 31/198 (15%)
Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60
M ++ I G ++ +AI K G V + + D+ +D ++IPGG S
Sbjct: 1 MIIGVLAIQGDVEEH--EEAIKKA-GYEAKKVKRVE-DLEGIDALIIPGGES-------T 49
Query: 61 AIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120
AI ++K + ++G C G + +
Sbjct: 50 AIGKLMKKYGLLEKIKNSNLPILGTCAGMVL--------------------LSKGTGINQ 89
Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDI 180
+ K N + + F D + + +V + S +
Sbjct: 90 ILLELMDITVKRNAYGRQVDSFEKEIEFKDLGKVYGVFIRAPVVDKILSDDVEVIARDGD 149
Query: 181 AGVINRRGNVLGMMPHPE 198
V ++G + + HPE
Sbjct: 150 KIVGVKQGKYMALSFHPE 167
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
N-type ATP pyrophosphatase, transferase (glutamine
amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli
K12} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Length = 525
Score = 31.5 bits (71), Expect = 0.15
Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 15/134 (11%)
Query: 71 AIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVVNSNTAFTKSY 130
A + + G+ V G+C G Q + L G + S + +EVVN +
Sbjct: 71 APQYVFEAGVPVFGVCYGMQTMAM--QLGGHVEA--SNEREFGYAQVEVVNDSALVRGIE 126
Query: 131 KMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVINRRGNV 190
P+ ++ ++ AS + A + N
Sbjct: 127 DALTADGKPLLDVWMSHGD------KVTAIPSDFITVASTES-----CPFAIMANEEKRF 175
Query: 191 LGMMPHPENIIEKF 204
G+ HPE +
Sbjct: 176 YGVQFHPEVTHTRQ 189
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis,
structural genomics, NPPSFA; 1.90A {Thermus thermophilus
HB8}
Length = 191
Score = 29.8 bits (66), Expect = 0.49
Identities = 24/181 (13%), Positives = 51/181 (28%), Gaps = 24/181 (13%)
Query: 18 IKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQ 77
+A+ ++ G V + + + + +++PGG S + K+ +
Sbjct: 18 KEALKRL-GIEAKEVRKKE-HLEGLKALIVPGGESTTI---GKLAREYGIEDEVRKRVEE 72
Query: 78 QGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIK 137
+ + G C G L + + R L+ ++ + +
Sbjct: 73 GSLALFGTCAGAIWLAKEIVGYPEQPRLGVLEAWVERNAFGRQVESFEEDLEVEGLGSFH 132
Query: 138 CPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVINRRGNVLGMMPHP 197
+ + V A + V R+G VL HP
Sbjct: 133 GVFIRAPVF-----------RRLGEGVEVLARLGD------LPVLV--RQGKVLASSFHP 173
Query: 198 E 198
E
Sbjct: 174 E 174
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B*
1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Length = 379
Score = 29.2 bits (65), Expect = 0.80
Identities = 30/174 (17%), Positives = 49/174 (28%), Gaps = 42/174 (24%)
Query: 43 DLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGIL 102
D I + G + AI+K + I V GIC G Q
Sbjct: 233 DGIFLSNGPGDPAPCDY--------AITAIQKFLETDIPVFGICLGHQ------------ 272
Query: 103 MRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQ 162
+L K V ++ + ++ +H + +D L N +
Sbjct: 273 --LLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNH--GFAVDEATL---PANLR 325
Query: 163 IVFRYASGTNPNGSLHD--IAGVINRRGNVLGMMPHPENIIEKFHGGIDGRGLF 214
+ + SL D + G+ +PE G D LF
Sbjct: 326 VTHK---------SLFDGTLQGIHRTDKPAFSFQGNPEAS----PGPHDAAPLF 366
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione,
oxidoreductase, dithiol-dependant peroxidase; 2.1A
{Trypanosoma brucei}
Length = 190
Score = 28.1 bits (61), Expect = 1.7
Identities = 14/131 (10%), Positives = 34/131 (25%), Gaps = 3/131 (2%)
Query: 56 YLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQV 115
+CG + K + + Q + + KF +
Sbjct: 57 ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFP 116
Query: 116 LLEVVNSNTAFTKSYKMNQIIKCPVAHHDGNY-FIDAKGLAEIEKNNQIVFRYASGTNPN 174
++ +N N P + L I+++ V R++ G +
Sbjct: 117 IMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFL--IDRDGVPVERFSPGASVK 174
Query: 175 GSLHDIAGVIN 185
+ ++
Sbjct: 175 DIEKKLIPLLE 185
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP
binding, ATP binding, purine nucleotide biosynthetic
pathway; 2.10A {Thermus thermophilus HB8} PDB: 2ywc_A*
Length = 503
Score = 27.7 bits (61), Expect = 2.0
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 41 DVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVE 94
+++ GG A + + G+ ++GIC G Q+L +
Sbjct: 42 RPQALILSGG--PRSVFDPDAP-------RPDPRLFSSGLPLLGICYGMQLLAQ 86
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 198
Score = 27.2 bits (60), Expect = 2.7
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 10/44 (22%)
Query: 131 KMN--QIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTN 172
++ QI++ P+ I + I N ++F +
Sbjct: 108 ILDVYQILQSPI--------ITEAAIKNIADENSLLFTVDVRAD 143
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis/exocytosis complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A
Length = 1630
Score = 27.3 bits (61), Expect = 2.8
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 171 TNPNGSLHDIAGVINRRGNVLGMMPHPENII 201
T P+ + I GV NR+G VL + ENII
Sbjct: 306 TAPHEATAGIIGV-NRKGQVLSVCVEEENII 335
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.3 bits (59), Expect = 3.1
Identities = 6/13 (46%), Positives = 9/13 (69%), Gaps = 1/13 (7%)
Query: 70 QAIKKKAQQGIKV 82
QA+ KK Q +K+
Sbjct: 20 QAL-KKLQASLKL 31
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus HB8} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A*
1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 1zn0_B 1jqs_C
2bcw_C 1jqs_B
Length = 691
Score = 26.6 bits (58), Expect = 4.1
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 173 PNGSLHDIAGVIN-RRGNVLGMMPHPENIIEKFH 205
P + D+ G +N RRG +LGM P + +
Sbjct: 613 PEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF 646
>3gc3_B Arrestin beta-1, clathrin heavy chain 1; protein-protein complex,
alternative splicing, phosphoprotein, sensory
transduction, acetylation, coated PIT; 2.20A {Bos
taurus} PDB: 1utc_A 3gd1_I 1c9i_A 1c9l_A
Length = 363
Score = 26.6 bits (59), Expect = 5.0
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 171 TNPNGSLHDIAGVINRRGNVLGMMPHPENII 201
T P+ + I GV NR+G VL + ENII
Sbjct: 306 TAPHEATAGIIGV-NRKGQVLSVCVEEENII 335
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase,
lipid peroxidase, schistosoma detoxification pathway;
1.00A {Schistosoma mansoni} PDB: 2wgr_A
Length = 169
Score = 26.3 bits (56), Expect = 5.8
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 8/46 (17%)
Query: 142 HHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVINRR 187
+ + +D +G Q V RY+ T P DI ++ ++
Sbjct: 132 WNFSKFLVDRQG--------QPVKRYSPTTAPYDIEGDIMELLEKK 169
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 26.3 bits (57), Expect = 6.1
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 173 PNGSLHDIAGVIN-RRGNVLGMMPHP 197
P ++ I V+N +RG V+ P
Sbjct: 736 PEQAVGGIYSVLNKKRGQVVSEEQRP 761
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.0 bits (57), Expect = 6.2
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 30/71 (42%)
Query: 132 MNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVINRRGNVL 191
+N ++ CP + K +IV R++ G D+ V G VL
Sbjct: 18 LNIVLTCP----------ECK-----VYPPKIVERFSEG--------DV--VCALCGLVL 52
Query: 192 GMMPHPENIIE 202
+ +++
Sbjct: 53 S-----DKLVD 58
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold,
epididymal androgen related protein, structural
genomics; 2.00A {Homo sapiens}
Length = 215
Score = 26.3 bits (57), Expect = 6.2
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 157 IEKNNQIVFRYASGTNPNGSLHDIAGVINR 186
+ + V R++ + DI + +
Sbjct: 183 VGPDGIPVMRWSHRATVSSVKTDILAYLKQ 212
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 26.0 bits (57), Expect = 6.5
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 173 PNGSLHDIAGVIN-RRGNVLGMMPHPENIIEKFH 205
P + DI G + RRG V GM P + +
Sbjct: 612 PEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAY 645
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 25.8 bits (56), Expect = 6.9
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 79 GIKVMGICNGFQILVELN 96
G V+GIC G Q++ ++
Sbjct: 101 GKPVLGICYGMQMMNKVF 118
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, cytoplasm,
oxidoreductase, peroxidase, redox-active center; 2.02A
{Saccharomyces cerevisiae}
Length = 171
Score = 26.1 bits (56), Expect = 7.3
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 8/46 (17%)
Query: 140 VAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVIN 185
+ + + +D KG ++ RY+S T P+ I ++
Sbjct: 131 IKWNFEKFLVDKKG--------KVYERYSSLTKPSSLSETIEELLK 168
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta
domain2: beta sandwich, structural genomics, PSI,
protein structure initiative; 2.30A {Thermotoga
maritima}
Length = 258
Score = 26.0 bits (56), Expect = 7.5
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGG 50
MK AI+ ++ + +K + + DLIV+ GG
Sbjct: 1 MKIAILYREEREKEGEFLKEKISKEHEVIEFGEANAPGRVTADLIVVVGG 50
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consortium,
SGC, oxidoreductase, polymorphism, secreted, selenium,
selenocysteine; 1.85A {Homo sapiens}
Length = 207
Score = 25.9 bits (56), Expect = 7.8
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 157 IEKNNQIVFRYASGTNPNGSLHDIAGVINRR 187
+ + + R+ T + DI + R+
Sbjct: 165 VGPDGIPIMRWHHRTTVSNVKMDILSYMRRQ 195
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1
PDB: 1i7q_B 1i7s_B*
Length = 192
Score = 25.9 bits (56), Expect = 8.3
Identities = 19/139 (13%), Positives = 39/139 (28%), Gaps = 28/139 (20%)
Query: 64 ARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVVNSN 123
+ M + + + + ++GIC G Q +VE
Sbjct: 61 SEAGCMPELLTRLRGKLPIIGICLGHQAIVE--------------------------AYG 94
Query: 124 TAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASG--TNPNGSLHDIA 181
++ ++ + H F + + + +V T +
Sbjct: 95 GYVGQAGEILHGKATSIEHDGQAMFAGLANPLPVARYHSLVGSNVPAGLTINAHFNGMVM 154
Query: 182 GVINRRGNVLGMMPHPENI 200
V + V G HPE+I
Sbjct: 155 AVRHDADRVCGFQFHPESI 173
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics,
structural genomics consortium, SGC, oxidoreductase;
1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Length = 208
Score = 25.5 bits (55), Expect = 8.6
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 157 IEKNNQIVFRYASGTNPNGSLHDIAGVINR 186
+ + + RY+ DI ++++
Sbjct: 179 VGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 208
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP
ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB:
2pfk_A
Length = 320
Score = 25.7 bits (56), Expect = 9.4
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 66 TPVMQA-----IKKKAQQGIKVMGICNGFQILVELNLLP 99
P M A ++ +G++VMGI +G+ L E ++
Sbjct: 14 APGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQ 52
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.141 0.421
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,971,872
Number of extensions: 93412
Number of successful extensions: 339
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 60
Length of query: 219
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 130
Effective length of database: 3,535,514
Effective search space: 459616820
Effective search space used: 459616820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)