RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780971|ref|YP_003065384.1| phosphoribosylformylglycinamidine synthase subunit I [Candidatus Liberibacter asiaticus str. psy62] (219 letters) >1t3t_A Phosphoribosylformylglycinamidine synthase; PURL, FGAM synthetase, PURS, PURQ, formyl glycinamide, ligase; HET: CYG ADP; 1.90A {Salmonella typhimurium} SCOP: a.5.10.1 c.23.16.1 d.284.1.2 d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 Length = 1303 Score = 131 bits (329), Expect = 1e-31 Identities = 64/224 (28%), Positives = 93/224 (41%), Gaps = 29/224 (12%) Query: 2 KTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSD-----TDIPDVDLIVIPGGFSYGDY 56 K A+++ G+N +M A + G I V SD + + +V GGFSYGD Sbjct: 1049 KVAVLREQGVNSHVEMAAAFHRA-GFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDV 1107 Query: 57 LRCGAIAART-----PVMQAIKK-KAQQGIKVMGICNGFQILVELNLL-PG-----ILMR 104 L G A++ V + + +G+CNG Q++ L L PG +R Sbjct: 1108 LGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVR 1167 Query: 105 NCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGN-YFIDAKGLAEIEKNNQI 163 N S +F + L+EV S + + + V+H +G D LA +E + Sbjct: 1168 NHSDRFEARFSLVEVTQSPSLLLQGMV-GSQMPIAVSHGEGRVEVRDDAHLAALESKGLV 1226 Query: 164 VFRYASGT---------NPNGSLHDIAGVINRRGNVLGMMPHPE 198 RY NPNGS + I V G V MMPHPE Sbjct: 1227 ALRYVDNFGKVTETYPANPNGSPNGITAVTTENGRVTIMMPHPE 1270 >3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima} Length = 213 Score = 125 bits (314), Expect = 7e-30 Identities = 97/218 (44%), Positives = 133/218 (61%), Gaps = 12/218 (5%) Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60 + +V PG N D D A+ +I G P V D + D +LI++PGGFSYGDYLR G Sbjct: 3 PRACVVVYPGSNCDRDAYHAL-EINGFEPSYVGLDD-KLDDYELIILPGGFSYGDYLRPG 60 Query: 61 AIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120 A+AAR + I K A++G +MGICNGFQIL+E+ LL G L++N S KF+CK V L V Sbjct: 61 AVAAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWVDLIVE 120 Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDI 180 N++T FT +++ + I+ P+AH G Y + +V RY + NGS I Sbjct: 121 NNDTPFTNAFEKGEKIRIPIAHGFGRYVKI--------DDVNVVLRYV--KDVNGSDERI 170 Query: 181 AGVINRRGNVLGMMPHPENIIEKFHGGIDGRGLFASLL 218 AGV+N GNV G+MPHPE +E+ GG DG+ +F S+L Sbjct: 171 AGVLNESGNVFGLMPHPERAVEELIGGEDGKKVFQSIL 208 >1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 Length = 219 Score = 79.8 bits (196), Expect = 5e-16 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 27/198 (13%) Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60 MK ++ + G R+ ++AI G ++V +S+ + +D +V+PGG S Sbjct: 24 MKIGVLGLQGAVRE--HVRAIEAC-GAEAVIVKKSE-QLEGLDGLVLPGGEST----TMR 75 Query: 61 AIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120 + R +M+ +K+ A G + G C G +L + + V + Sbjct: 76 RLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYDEPHLGLMDITVERN------ 129 Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDI 180 + + ++ V FI A + E ++ Y I Sbjct: 130 --SFGRQRESFEAELSIKGVGDGFVGVFIRAPHIVEAGDGVDVLATYN---------DRI 178 Query: 181 AGVINRRGNVLGMMPHPE 198 R+G LG HPE Sbjct: 179 VAA--RQGQFLGCSFHPE 194 >1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Length = 315 Score = 55.6 bits (133), Expect = 9e-09 Identities = 29/184 (15%), Positives = 52/184 (28%), Gaps = 16/184 (8%) Query: 26 GQSPILVWQSDTD------IPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQG 79 G + V T+ ++ I+ PGG +A + Sbjct: 65 GARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDY 124 Query: 80 IKVMGICNGFQILV-----ELNLLPGILMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQ 134 V G C GF+ L E L + L + N + Sbjct: 125 FPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAV 184 Query: 135 IIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVINRRGNVLGMM 194 H + +++K ++ TN +G + I+ + + V G+ Sbjct: 185 EPLTANFHKWSLSVKNFTMNEKLKKFFNVL-----TTNTDGKIEFISTMEGYKYPVYGVQ 239 Query: 195 PHPE 198 HPE Sbjct: 240 WHPE 243 >2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B* Length = 196 Score = 53.7 bits (128), Expect = 3e-08 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 27/198 (13%) Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60 + ++ + G R++ I AI G + ++V + + + +VD +++PGG S Sbjct: 2 LTIGVLGLQGAVREH--IHAIEAC-GAAGLVVKRPE-QLNEVDGLILPGGEST----TMR 53 Query: 61 AIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120 + M+ +++ A QG + G C G IL + V + V Sbjct: 54 RLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGSDNPHLGLLNVVVERNSFGRQV 113 Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDI 180 +S A +++ E N +IV Sbjct: 114 DSFEADLTIKGLDEPFTGVFIRAPHILEAGENVEVLSEHNGRIV---------------- 157 Query: 181 AGVINRRGNVLGMMPHPE 198 ++G LG HPE Sbjct: 158 ---AAKQGQFLGCSFHPE 172 >3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175 Score = 45.4 bits (107), Expect = 1e-05 Identities = 14/87 (16%), Positives = 32/87 (36%) Query: 14 DNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIK 73 D IK + ++ ++ + D +V G + + + +M+ IK Sbjct: 39 DTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIK 98 Query: 74 KKAQQGIKVMGICNGFQILVELNLLPG 100 ++G ++G C G + + G Sbjct: 99 TFGEKGKMMIGHCAGAMMFDFTGITKG 125 >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A substrate tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A Length = 555 Score = 44.6 bits (105), Expect = 2e-05 Identities = 37/206 (17%), Positives = 68/206 (33%), Gaps = 34/206 (16%) Query: 18 IKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQ 77 AI + + ++ D +I +++PG +YG + I++ + Sbjct: 21 TNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGH---FVDNLFNRGFEKPIREYIE 77 Query: 78 QGIKVMGICNGFQILVE----------LNLLPGILMRNCSLKFVCKQVLLEVVNSNTAFT 127 G +MGI G Q L LN + L R F + + + N+ Sbjct: 78 SGKPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSR-----FDDSEKPVPEIGWNSCIP 132 Query: 128 KSYKMNQIIKCPVAH--HDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVIN 185 + + H ++++ +E + + GS IA V Sbjct: 133 SENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGWKI-----AKAKYGSEEFIAAV-- 185 Query: 186 RRGNVLGMMPHPE-------NIIEKF 204 + N+ HPE N+IE F Sbjct: 186 NKNNIFATQFHPEKSGKAGLNVIENF 211 >2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase; HET: 5RP; 2.90A {Thermotoga maritima} Length = 208 Score = 44.8 bits (105), Expect = 2e-05 Identities = 40/198 (20%), Positives = 75/198 (37%), Gaps = 26/198 (13%) Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60 MK ++ + G R++ ++A+ K+ G ++V + + VD +++PGG S Sbjct: 21 MKIGVLGVQGDVREH--VEALHKL-GVETLIVKLPE-QLDMVDGLILPGGEST----TMI 72 Query: 61 AIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120 I + + + ++ G+ V C G +L + V + Sbjct: 73 RILKEMDMDEKLVERINNGLPVFATCAGVILLAKRIKNYSQEKLGVLDITVER---NAYG 129 Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDI 180 +F ++ + K P FI A + E KN +I+ Y +D Sbjct: 130 RQVESFETFVEIPAVGKDPFRA----IFIRAPRIVETGKNVEILATYD---------YDP 176 Query: 181 AGVINRRGNVLGMMPHPE 198 V + GN+L HPE Sbjct: 177 VLV--KEGNILACTFHPE 192 >1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1 Length = 200 Score = 42.8 bits (100), Expect = 6e-05 Identities = 31/202 (15%), Positives = 69/202 (34%), Gaps = 28/202 (13%) Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60 MK ++ N + KA+ G S + Q + DL+V+PG +G Sbjct: 3 MKALLIDYGSGNLRS-AAKALEAA-GFSVAVA-QDPKAHEEADLLVLPGQGHFGQ---VM 56 Query: 61 AIAARTPVMQAIKKKAQQGIKVMGICNGFQILV----ELNLLPGILMRNCSLKFVCKQVL 116 + ++ +++ ++G+ +GIC G Q+L E + G+ + ++ + Sbjct: 57 RAFQESGFVERVRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRV 116 Query: 117 LEVVNSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGS 176 ++ + F ++ A+ + + Y Sbjct: 117 PQMGWNALEFGGAFAPLTGRHFYFANSYY---------GPLTPYSLGKGEYEG------- 160 Query: 177 LHDIAGVINRRGNVLGMMPHPE 198 ++ + N+L HPE Sbjct: 161 -TPFTALL-AKENLLAPQFHPE 180 >3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and ferritin-like domains; YP_324989.1, structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365 Score = 42.6 bits (100), Expect = 6e-05 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 6/66 (9%) Query: 35 SDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVE 94 ++ + D +VIPGG + D +R ++ +++ +QG V +C+G Q+L+E Sbjct: 67 TEAIASEFDAVVIPGGMA-PDKMRRNP-----NTVRFVQEAMEQGKLVAAVCHGPQVLIE 120 Query: 95 LNLLPG 100 +LL G Sbjct: 121 GDLLRG 126 >2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 Length = 227 Score = 42.2 bits (98), Expect = 9e-05 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 11/202 (5%) Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSD-TDIPDVDLIVIPGGFSYGDYLRC 59 + ++ + G + I K+ S ++ + D+ D +VIPGG S RC Sbjct: 4 ITIGVLSLQGDFEPH--INHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVR-RC 60 Query: 60 GAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEV 119 A T + + G C G +L + + + + Sbjct: 61 CAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITIC 120 Query: 120 VNSNTAFTKSYKMNQIIKCPVAHHDG---NYFIDAKGLAEIEKNNQIVFRYASGTNPNGS 176 N + S+ + I + I A + EI + V A+ ++ + Sbjct: 121 RNFYGSQNDSFICSLNIISDSSAFKKDLTAACIRAPYIREILSDEVKVL--ATFSHESYG 178 Query: 177 LHDIAGVINRRGNVLGMMPHPE 198 + IA V + N LG + HPE Sbjct: 179 PNIIAAV--EQNNCLGTVFHPE 198 >3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} Length = 254 Score = 41.4 bits (96), Expect = 1e-04 Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 33/222 (14%) Query: 15 NDMIKAITKIIGQSPILVWQSDTDIPD-----VDLIVIPGGFSYGDYLRCGAIAARTPV- 68 + AI K+ G PI + D VD +++ GG L + Sbjct: 31 QRYVDAIQKV-GGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAY 89 Query: 69 --------MQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120 + ++ G + IC G Q++ +L QV + + Sbjct: 90 FPPRDSYEIALVRAALDAGKPIFAICRGMQLVNV--------ALGGTLYQDISQVETKAL 141 Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHD- 179 + + I P + ++ ++Q + + A D Sbjct: 142 QHLQRVDEQLGSHTIDIEPTSELAKHHPNKKL---VNSLHHQFIKKLAPSFKVTARTADG 198 Query: 180 -IAGVI--NRRGNVLGMMPHPENIIEKFHGGIDGRGLFASLL 218 I V N LG+ HPE + F + LF +L+ Sbjct: 199 MIEAVEGDNLPSWYLGVQWHPELM---FQTDPESEQLFQALV 237 >1o1y_A Conserved hypothetical protein TM1158; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 Length = 239 Score = 39.7 bits (92), Expect = 6e-04 Identities = 33/188 (17%), Positives = 60/188 (31%), Gaps = 34/188 (18%) Query: 38 DIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNL 97 + + L+V+ GG Y Q I++ ++ I +GIC G Q+L ++ Sbjct: 54 PLEEYSLVVLLGG--YMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKVL- 110 Query: 98 LPGILMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEI 157 G + +E V+ N F + ++ + D A + Sbjct: 111 --GASVYRGKNGEEIGWYFVEKVSDNKFFREFPDRLRVFQWHGDTFDLPR--RATRVFTS 166 Query: 158 EKNNQIVFRYASGTNPNGSLHDIAGVINRRGNVLGMMPHPE-------NIIEKFHGGIDG 210 EK F Y G +G+ H E IE + ++ Sbjct: 167 EKYENQGFVY--------------------GKAVGLQFHIEVGARTMKRWIEAYKDELEK 206 Query: 211 RGLFASLL 218 + + LL Sbjct: 207 KKIDPRLL 214 >1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A Length = 201 Score = 39.5 bits (91), Expect = 6e-04 Identities = 29/200 (14%), Positives = 66/200 (33%), Gaps = 22/200 (11%) Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQ--SDTDIPDVDLIVIPGGFSYGDYLR 58 M+ I+ + N N + + + + + + DL+ IPG +G+ Sbjct: 1 MRIGIISVGPGNIMN-LYRGVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGE--- 56 Query: 59 CGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLE 118 ++ ++K + V+G+C G Q+L E + + ++ ++ Sbjct: 57 GMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSR 116 Query: 119 VVNSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLH 178 + +K H + + + + + +F Sbjct: 117 RLPHMGWNEVIFKDTFPNGYYYFVHTYRAVCEEEHVLGTTEYDGEIF------------- 163 Query: 179 DIAGVINRRGNVLGMMPHPE 198 + V R+G +LG HPE Sbjct: 164 -PSAV--RKGRILGFQFHPE 180 >3bhn_A THIJ/PFPI domain protein; YP_001094981.1, DJ-1 like protein, DJ-1/PFPI family, structural genomics, joint center for structural genomics; HET: MSE; 1.76A {Shewanella loihica pv-4} Length = 236 Score = 38.5 bits (89), Expect = 0.001 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 6/78 (7%) Query: 29 PILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNG 88 + +++ + D+++I G+ + + K + IC G Sbjct: 68 TVKTDGHVSEVKEQDVVLITSGYRGIPAAL------QDENFMSALKLDPSRQLIGSICAG 121 Query: 89 FQILVELNLLPGILMRNC 106 +L EL LL G + Sbjct: 122 SFVLHELGLLKGKKLTTN 139 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 37.6 bits (87), Expect = 0.002 Identities = 46/217 (21%), Positives = 62/217 (28%), Gaps = 103/217 (47%) Query: 11 LNRDNDMIKAITKIIGQS-PILVWQSDTD-IPDVD-LIVIP------G------------ 49 L R + K+ Q IL W + PD D L+ IP G Sbjct: 198 LIRTTLDAE---KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254 Query: 50 --GFSYGDYLR---CGA--------IAARTPVMQAI---------KKKAQQGIKVMGICN 87 GF+ G+ LR GA A AI ++ I V+ Sbjct: 255 LLGFTPGE-LRSYLKGATGHSQGLVTAV------AIAETDSWESFFVSVRKAITVL---- 303 Query: 88 GFQILVE-------LNLLPGIL-------------M---RNCSLKFV------C------ 112 F I V +L P IL M N + + V Sbjct: 304 -FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362 Query: 113 -KQVLLEVVNSNTAF-----TKS-YKMNQI---IKCP 139 KQV + +VN +S Y +N K P Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399 >3efe_A THIJ/PFPI family protein; structural genomics, csgid, center for structural genomics of infectious diseases, chaperone; 2.30A {Bacillus anthracis} Length = 212 Score = 37.4 bits (86), Expect = 0.003 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 7/66 (10%) Query: 35 SDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVE 94 + + DL+++PGG + P+++ I + + G V IC L Sbjct: 68 DECTLESKDLLILPGGT-------TWSEEIHQPILERIGQALKIGTIVAAICGATDALAN 120 Query: 95 LNLLPG 100 + L Sbjct: 121 MGYLDT 126 >3l83_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2, protein structure initiative; 1.50A {Methylobacillus flagellatus} Length = 250 Score = 37.1 bits (85), Expect = 0.004 Identities = 21/161 (13%), Positives = 44/161 (27%), Gaps = 27/161 (16%) Query: 38 DIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNL 97 +I D + + GG + ++ I+ Q + V+G C G Q+L + Sbjct: 45 EIRDCSGLAMMGG-PMSANDDLPWMP---TLLALIRDAVAQRVPVIGHCLGGQLLAKAM- 99 Query: 98 LPGILMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEI 157 G + + + + + V + + + + F G I Sbjct: 100 -GGEVTDSPHAEIGWVRAWPQHVPQALEW-----LGTWDELELFEWHYQTFSIPPGAVHI 153 Query: 158 EKNNQIVFRYASGTNPNGSLHDIAGVINRRGNVLGMMPHPE 198 ++ H +G H E Sbjct: 154 LRSE----------------HCANQAYVLDDLHIGFQCHIE 178 >1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3 Length = 715 Score = 36.9 bits (85), Expect = 0.004 Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 5/66 (7%) Query: 35 SDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVE 94 VD I IPGG + L + I++ + ++ + Sbjct: 589 EGFRSTMVDAIFIPGGAKAAETLS-----KNGRALHWIREAFGHLKAIGATGEAVDLVAK 643 Query: 95 LNLLPG 100 LP Sbjct: 644 AIALPQ 649 >3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} Length = 211 Score = 34.9 bits (80), Expect = 0.012 Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 29 PILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNG 88 + D ++ +PGG + + + I ++ ++ +C G Sbjct: 53 RVETSLYTRDENIEKILFVPGGSGTREKVNDDN------FINFIGNMVKESKYIISVCTG 106 Query: 89 FQILVELNLLPG 100 +L + +L G Sbjct: 107 SALLSKAGILNG 118 >1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A Length = 232 Score = 33.1 bits (75), Expect = 0.051 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 5/71 (7%) Query: 35 SDTDIPDVDLIVIPGGFSYGDYLRCGAIAAR-----TPVMQAIKKKAQQGIKVMGICNGF 89 + D ++D +++PGGF L A + + Q G + +C Sbjct: 84 AQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAP 143 Query: 90 QILVELNLLPG 100 +L ++ P Sbjct: 144 AMLPKIFDFPL 154 >3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* Length = 250 Score = 33.2 bits (75), Expect = 0.051 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 8/59 (13%) Query: 38 DIPDVDLIVIPGG--FSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVE 94 +I D + + GG + D ++ I+ Q + V+G C G Q+L + Sbjct: 45 EIRDCSGLAMMGGPMSANDDLPWM------PTLLALIRDAVAQRVPVIGHCLGGQLLAK 97 >3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isoprenoid biosynthesis; 1.90A {Ehrlichia chaffeensis} Length = 242 Score = 32.6 bits (74), Expect = 0.064 Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 7/73 (9%) Query: 35 SDTDIPDVDLIVIPGGFSYGDYLR------CGAIAARTPVMQAIKKKAQQGIKVMGICNG 88 + + D++VIPGG+ A+++ + +C Sbjct: 101 EQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCIS 160 Query: 89 FQILVE-LNLLPG 100 ++V L + Sbjct: 161 PAVVVALLKDIAK 173 >1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A Length = 291 Score = 32.7 bits (74), Expect = 0.065 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 5/64 (7%) Query: 32 VWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQI 91 V S + I +PGG L V A++ + V+ +C+G Sbjct: 136 VVASLNADSEYAAIFVPGGHGALIGLPESQ-----DVAAALQWAIKNDRFVISLCHGPAA 190 Query: 92 LVEL 95 + L Sbjct: 191 FLAL 194 >2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii DSM2661} Length = 186 Score = 32.2 bits (72), Expect = 0.092 Identities = 32/198 (16%), Positives = 62/198 (31%), Gaps = 31/198 (15%) Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCG 60 M ++ I G ++ +AI K G V + + D+ +D ++IPGG S Sbjct: 1 MIIGVLAIQGDVEEH--EEAIKKA-GYEAKKVKRVE-DLEGIDALIIPGGES-------T 49 Query: 61 AIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVV 120 AI ++K + ++G C G + + Sbjct: 50 AIGKLMKKYGLLEKIKNSNLPILGTCAGMVL--------------------LSKGTGINQ 89 Query: 121 NSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDI 180 + K N + + F D + + +V + S + Sbjct: 90 ILLELMDITVKRNAYGRQVDSFEKEIEFKDLGKVYGVFIRAPVVDKILSDDVEVIARDGD 149 Query: 181 AGVINRRGNVLGMMPHPE 198 V ++G + + HPE Sbjct: 150 KIVGVKQGKYMALSFHPE 167 >1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphatase, transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli K12} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Length = 525 Score = 31.5 bits (71), Expect = 0.15 Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 15/134 (11%) Query: 71 AIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVVNSNTAFTKSY 130 A + + G+ V G+C G Q + L G + S + +EVVN + Sbjct: 71 APQYVFEAGVPVFGVCYGMQTMAM--QLGGHVEA--SNEREFGYAQVEVVNDSALVRGIE 126 Query: 131 KMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVINRRGNV 190 P+ ++ ++ AS + A + N Sbjct: 127 DALTADGKPLLDVWMSHGD------KVTAIPSDFITVASTES-----CPFAIMANEEKRF 175 Query: 191 LGMMPHPENIIEKF 204 G+ HPE + Sbjct: 176 YGVQFHPEVTHTRQ 189 >2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} Length = 191 Score = 29.8 bits (66), Expect = 0.49 Identities = 24/181 (13%), Positives = 51/181 (28%), Gaps = 24/181 (13%) Query: 18 IKAITKIIGQSPILVWQSDTDIPDVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQ 77 +A+ ++ G V + + + + +++PGG S + K+ + Sbjct: 18 KEALKRL-GIEAKEVRKKE-HLEGLKALIVPGGESTTI---GKLAREYGIEDEVRKRVEE 72 Query: 78 QGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIK 137 + + G C G L + + R L+ ++ + + Sbjct: 73 GSLALFGTCAGAIWLAKEIVGYPEQPRLGVLEAWVERNAFGRQVESFEEDLEVEGLGSFH 132 Query: 138 CPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVINRRGNVLGMMPHP 197 + + V A + V R+G VL HP Sbjct: 133 GVFIRAPVF-----------RRLGEGVEVLARLGD------LPVLV--RQGKVLASSFHP 173 Query: 198 E 198 E Sbjct: 174 E 174 >1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* Length = 379 Score = 29.2 bits (65), Expect = 0.80 Identities = 30/174 (17%), Positives = 49/174 (28%), Gaps = 42/174 (24%) Query: 43 DLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGIL 102 D I + G + AI+K + I V GIC G Q Sbjct: 233 DGIFLSNGPGDPAPCDY--------AITAIQKFLETDIPVFGICLGHQ------------ 272 Query: 103 MRNCSLKFVCKQVLLEVVNSNTAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQ 162 +L K V ++ + ++ +H + +D L N + Sbjct: 273 --LLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNH--GFAVDEATL---PANLR 325 Query: 163 IVFRYASGTNPNGSLHD--IAGVINRRGNVLGMMPHPENIIEKFHGGIDGRGLF 214 + + SL D + G+ +PE G D LF Sbjct: 326 VTHK---------SLFDGTLQGIHRTDKPAFSFQGNPEAS----PGPHDAAPLF 366 >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, oxidoreductase, dithiol-dependant peroxidase; 2.1A {Trypanosoma brucei} Length = 190 Score = 28.1 bits (61), Expect = 1.7 Identities = 14/131 (10%), Positives = 34/131 (25%), Gaps = 3/131 (2%) Query: 56 YLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQV 115 +CG + K + + Q + + KF + Sbjct: 57 ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFP 116 Query: 116 LLEVVNSNTAFTKSYKMNQIIKCPVAHHDGNY-FIDAKGLAEIEKNNQIVFRYASGTNPN 174 ++ +N N P + L I+++ V R++ G + Sbjct: 117 IMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFL--IDRDGVPVERFSPGASVK 174 Query: 175 GSLHDIAGVIN 185 + ++ Sbjct: 175 DIEKKLIPLLE 185 >2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway; 2.10A {Thermus thermophilus HB8} PDB: 2ywc_A* Length = 503 Score = 27.7 bits (61), Expect = 2.0 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 9/54 (16%) Query: 41 DVDLIVIPGGFSYGDYLRCGAIAARTPVMQAIKKKAQQGIKVMGICNGFQILVE 94 +++ GG A + + G+ ++GIC G Q+L + Sbjct: 42 RPQALILSGG--PRSVFDPDAP-------RPDPRLFSSGLPLLGICYGMQLLAQ 86 >3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 198 Score = 27.2 bits (60), Expect = 2.7 Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 10/44 (22%) Query: 131 KMN--QIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTN 172 ++ QI++ P+ I + I N ++F + Sbjct: 108 ILDVYQILQSPI--------ITEAAIKNIADENSLLFTVDVRAD 143 >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A Length = 1630 Score = 27.3 bits (61), Expect = 2.8 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Query: 171 TNPNGSLHDIAGVINRRGNVLGMMPHPENII 201 T P+ + I GV NR+G VL + ENII Sbjct: 306 TAPHEATAGIIGV-NRKGQVLSVCVEEENII 335 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 27.3 bits (59), Expect = 3.1 Identities = 6/13 (46%), Positives = 9/13 (69%), Gaps = 1/13 (7%) Query: 70 QAIKKKAQQGIKV 82 QA+ KK Q +K+ Sbjct: 20 QAL-KKLQASLKL 31 >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus HB8} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 1zn0_B 1jqs_C 2bcw_C 1jqs_B Length = 691 Score = 26.6 bits (58), Expect = 4.1 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Query: 173 PNGSLHDIAGVIN-RRGNVLGMMPHPENIIEKFH 205 P + D+ G +N RRG +LGM P + + Sbjct: 613 PEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF 646 >3gc3_B Arrestin beta-1, clathrin heavy chain 1; protein-protein complex, alternative splicing, phosphoprotein, sensory transduction, acetylation, coated PIT; 2.20A {Bos taurus} PDB: 1utc_A 3gd1_I 1c9i_A 1c9l_A Length = 363 Score = 26.6 bits (59), Expect = 5.0 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Query: 171 TNPNGSLHDIAGVINRRGNVLGMMPHPENII 201 T P+ + I GV NR+G VL + ENII Sbjct: 306 TAPHEATAGIIGV-NRKGQVLSVCVEEENII 335 >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A Length = 169 Score = 26.3 bits (56), Expect = 5.8 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 8/46 (17%) Query: 142 HHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVINRR 187 + + +D +G Q V RY+ T P DI ++ ++ Sbjct: 132 WNFSKFLVDRQG--------QPVKRYSPTTAPYDIEGDIMELLEKK 169 >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842 Score = 26.3 bits (57), Expect = 6.1 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%) Query: 173 PNGSLHDIAGVIN-RRGNVLGMMPHP 197 P ++ I V+N +RG V+ P Sbjct: 736 PEQAVGGIYSVLNKKRGQVVSEEQRP 761 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Score = 26.0 bits (57), Expect = 6.2 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 30/71 (42%) Query: 132 MNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVINRRGNVL 191 +N ++ CP + K +IV R++ G D+ V G VL Sbjct: 18 LNIVLTCP----------ECK-----VYPPKIVERFSEG--------DV--VCALCGLVL 52 Query: 192 GMMPHPENIIE 202 + +++ Sbjct: 53 S-----DKLVD 58 >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, structural genomics; 2.00A {Homo sapiens} Length = 215 Score = 26.3 bits (57), Expect = 6.2 Identities = 4/30 (13%), Positives = 11/30 (36%) Query: 157 IEKNNQIVFRYASGTNPNGSLHDIAGVINR 186 + + V R++ + DI + + Sbjct: 183 VGPDGIPVMRWSHRATVSSVKTDILAYLKQ 212 >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} Length = 693 Score = 26.0 bits (57), Expect = 6.5 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%) Query: 173 PNGSLHDIAGVIN-RRGNVLGMMPHPENIIEKFH 205 P + DI G + RRG V GM P + + Sbjct: 612 PEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAY 645 >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697 Score = 25.8 bits (56), Expect = 6.9 Identities = 7/18 (38%), Positives = 12/18 (66%) Query: 79 GIKVMGICNGFQILVELN 96 G V+GIC G Q++ ++ Sbjct: 101 GKPVLGICYGMQMMNKVF 118 >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, cytoplasm, oxidoreductase, peroxidase, redox-active center; 2.02A {Saccharomyces cerevisiae} Length = 171 Score = 26.1 bits (56), Expect = 7.3 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 8/46 (17%) Query: 140 VAHHDGNYFIDAKGLAEIEKNNQIVFRYASGTNPNGSLHDIAGVIN 185 + + + +D KG ++ RY+S T P+ I ++ Sbjct: 131 IKWNFEKFLVDKKG--------KVYERYSSLTKPSSLSETIEELLK 168 >1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} Length = 258 Score = 26.0 bits (56), Expect = 7.5 Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 1 MKTAIVQIPGLNRDNDMIKAITKIIGQSPILVWQSDTDIPDVDLIVIPGG 50 MK AI+ ++ + +K + + DLIV+ GG Sbjct: 1 MKIAILYREEREKEGEFLKEKISKEHEVIEFGEANAPGRVTADLIVVVGG 50 >2r37_A Glutathione peroxidase 3; plasma, structural genomics consortium, SGC, oxidoreductase, polymorphism, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} Length = 207 Score = 25.9 bits (56), Expect = 7.8 Identities = 5/31 (16%), Positives = 12/31 (38%) Query: 157 IEKNNQIVFRYASGTNPNGSLHDIAGVINRR 187 + + + R+ T + DI + R+ Sbjct: 165 VGPDGIPIMRWHHRTTVSNVKMDILSYMRRQ 195 >1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Length = 192 Score = 25.9 bits (56), Expect = 8.3 Identities = 19/139 (13%), Positives = 39/139 (28%), Gaps = 28/139 (20%) Query: 64 ARTPVMQAIKKKAQQGIKVMGICNGFQILVELNLLPGILMRNCSLKFVCKQVLLEVVNSN 123 + M + + + + ++GIC G Q +VE Sbjct: 61 SEAGCMPELLTRLRGKLPIIGICLGHQAIVE--------------------------AYG 94 Query: 124 TAFTKSYKMNQIIKCPVAHHDGNYFIDAKGLAEIEKNNQIVFRYASG--TNPNGSLHDIA 181 ++ ++ + H F + + + +V T + Sbjct: 95 GYVGQAGEILHGKATSIEHDGQAMFAGLANPLPVARYHSLVGSNVPAGLTINAHFNGMVM 154 Query: 182 GVINRRGNVLGMMPHPENI 200 V + V G HPE+I Sbjct: 155 AVRHDADRVCGFQFHPESI 173 >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A Length = 208 Score = 25.5 bits (55), Expect = 8.6 Identities = 4/30 (13%), Positives = 12/30 (40%) Query: 157 IEKNNQIVFRYASGTNPNGSLHDIAGVINR 186 + + + RY+ DI ++++ Sbjct: 179 VGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 208 >1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Length = 320 Score = 25.7 bits (56), Expect = 9.4 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Query: 66 TPVMQA-----IKKKAQQGIKVMGICNGFQILVELNLLP 99 P M A ++ +G++VMGI +G+ L E ++ Sbjct: 14 APGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQ 52 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.141 0.421 Gapped Lambda K H 0.267 0.0528 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,971,872 Number of extensions: 93412 Number of successful extensions: 339 Number of sequences better than 10.0: 1 Number of HSP's gapped: 316 Number of HSP's successfully gapped: 60 Length of query: 219 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 130 Effective length of database: 3,535,514 Effective search space: 459616820 Effective search space used: 459616820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.4 bits)