Query gi|254780972|ref|YP_003065385.1| phosphoribosylformylglycinamidine synthase, PurS protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 84
No_of_seqs 101 out of 950
Neff 5.4
Searched_HMMs 33803
Date Wed Jun 1 19:51:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780972.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2zw2_A Putative uncharacteriz 100.0 2.9E-31 8.5E-36 202.6 10.6 84 1-84 5-89 (92)
2 >1gtd_A MTH169; synthetase, FG 100.0 8.2E-31 2.4E-35 199.9 11.9 82 2-84 3-84 (85)
3 >2yx5_A UPF0062 protein MJ1593 100.0 3E-30 8.8E-35 196.7 12.1 83 1-83 1-83 (83)
4 >1t4a_A PURS; tetramer, comple 100.0 1.4E-29 4.2E-34 192.8 10.9 83 1-84 1-83 (84)
5 >2dgb_A Hypothetical protein P 100.0 7.5E-29 2.2E-33 188.6 11.7 79 2-82 4-82 (84)
6 >1vq3_A Phosphoribosylformylgl 100.0 3.5E-28 1E-32 184.7 11.5 79 1-79 15-93 (94)
7 >1t3t_A Phosphoribosylformylgl 87.1 2.6 7.6E-05 23.4 6.5 66 4-74 81-146 (158)
8 >3bn7_A Ferredoxin-like protei 77.1 3.4 0.0001 22.7 4.0 39 4-42 23-62 (120)
9 >3iyd_A DNA-directed RNA polym 70.6 9.1 0.00027 20.2 4.9 51 17-67 34-96 (114)
10 >1q4r_A Protein AT3G17210; cen 63.0 12 0.00036 19.5 4.3 42 1-42 10-53 (112)
11 >1y51_A Phosphocarrier protein 61.7 15 0.00043 19.0 6.2 64 1-64 1-82 (88)
12 >3bde_A MLL5499 protein; NP_10 61.3 14 0.00043 19.1 4.4 39 4-42 23-63 (120)
13 >1tr0_A Stable protein 1; plan 61.0 14 0.00041 19.2 4.3 41 1-41 8-50 (108)
14 >3bgu_A Ferredoxin-like protei 59.5 16 0.00048 18.8 4.9 42 1-42 21-64 (116)
15 >1xrs_B D-lysine 5,6-aminomuta 59.4 15 0.00043 19.0 4.2 32 42-73 35-67 (94)
16 >3ccd_A Phosphocarrier protein 58.9 16 0.00049 18.7 6.2 63 1-63 1-81 (85)
17 >1ptf_A Histidine-containing p 52.8 21 0.00062 18.1 6.7 64 1-65 1-83 (88)
18 >1sph_A Histidine-containing p 49.7 23 0.00069 17.9 5.9 64 1-65 1-83 (88)
19 >2qyc_A Ferredoxin-like protei 47.6 24 0.00072 17.7 3.7 40 3-42 6-47 (103)
20 >3bb5_A Stress responsive alph 47.2 14 0.00042 19.1 2.5 40 3-42 22-63 (121)
21 >2a6h_A DNA-directed RNA polym 41.1 32 0.00095 17.1 4.4 48 18-66 32-96 (190)
22 >1we3_A CPN60(groel); chaperon 36.4 36 0.0011 16.8 3.2 49 18-66 20-69 (131)
23 >1pch_A Phosphocarrier protein 35.7 39 0.0012 16.6 3.4 60 3-63 2-80 (88)
24 >3ihs_A Phosphocarrier protein 33.9 42 0.0012 16.4 3.4 61 1-62 25-104 (106)
25 >1kkl_H Phosphocarrier protein 33.2 43 0.0013 16.3 6.1 65 1-65 13-95 (100)
26 >1yem_A Hypothetical protein; 31.4 46 0.0014 16.1 5.5 53 17-69 86-159 (179)
27 >1ka5_A Phosphocarrier protein 30.2 49 0.0014 16.0 4.2 65 3-67 3-85 (88)
28 >1rjj_A Expressed protein; bet 23.3 65 0.0019 15.3 4.5 77 1-78 5-101 (111)
29 >1yjr_A Copper-transporting AT 22.2 54 0.0016 15.8 2.0 31 18-50 18-51 (75)
30 >2iaz_A Hypothetical protein S 21.5 42 0.0012 16.4 1.3 53 15-75 34-86 (113)
31 >2qif_A Copper chaperone COPZ; 21.2 72 0.0021 15.0 3.8 31 19-49 17-48 (69)
No 1
>>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii} (A:)
Probab=99.97 E-value=2.9e-31 Score=202.57 Aligned_cols=84 Identities=18% Similarity=0.387 Sum_probs=81.7
Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHH-CCCCCEEEEEEEE
Q ss_conf 959999999588666877899999986288642000023018999973899899999999999984-7976124799999
Q gi|254780972|r 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESICQNL-LANPVIEDYDIKV 79 (84)
Q Consensus 1 m~k~~V~V~lK~gVlDPqG~aV~~aL~~lG~~~v~~vr~GK~iei~i~~~~~~~a~~~v~~~c~~l-LaNpvIE~y~i~i 79 (84)
||+++|+|+||||||||||+||+++|++|||++|.+||+||+|+|+++++|+++|.+++++||++| |+|||||+|+|++
T Consensus 5 ~~~~~V~V~lK~gVlDPqG~aI~~aL~~lG~~~V~~VRvgK~~~l~i~~~~~e~a~~~v~~~c~~L~LaNpvIEdy~i~v 84 (92)
T 2zw2_A 5 LYRVELIITNKEGVRDPEGETIQRYVVSRFSDKIIETRAGKYLVFRVNSSSQQEATELVKKLADEMRLYNPIVHKIEIRA 84 (92)
T ss_dssp EEEEEEEEEECTTSCCHHHHHHHHHTHHHHCTTEEEEEEEEEEEEEEECSSHHHHHHHHHHHHHHTTSSCTTTEEEEEEE
T ss_pred EEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEE
T ss_conf 69999999988855380578999999863887654478765999999079989999999999964777687368999999
Q ss_pred EECCC
Q ss_conf 97179
Q gi|254780972|r 80 QKSSS 84 (84)
Q Consensus 80 ~e~~s 84 (84)
++.++
T Consensus 85 ~e~~~ 89 (92)
T 2zw2_A 85 NRIED 89 (92)
T ss_dssp EEEC-
T ss_pred EEECC
T ss_conf 98036
No 2
>>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} (A:)
Probab=99.97 E-value=8.2e-31 Score=199.91 Aligned_cols=82 Identities=33% Similarity=0.647 Sum_probs=80.2
Q ss_pred EEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 59999999588666877899999986288642000023018999973899899999999999984797612479999997
Q gi|254780972|r 2 IKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESICQNLLANPVIEDYDIKVQK 81 (84)
Q Consensus 2 ~k~~V~V~lK~gVlDPqG~aV~~aL~~lG~~~v~~vr~GK~iei~i~~~~~~~a~~~v~~~c~~lLaNpvIE~y~i~i~e 81 (84)
|+++|+|+||||||||||+||+++|++|||+ |++||+||+|+|+++++|+++|.+++++||++||+|||||+|+|++++
T Consensus 3 ~~~~V~V~lK~gVlDPqG~aI~~aL~~lG~~-V~~VRvGK~iel~i~~~~~e~a~~~v~~~c~~lLaNpvIE~y~i~i~e 81 (85)
T 1gtd_A 3 FXVEVRIRLKKGXLNPEAATIERALALLGYE-VEDTDTTDVITFTXDEDSLEAVEREVEDXCQRLLCNPVIHDYDVSINE 81 (85)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHHTCC-CEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHTTCCTTTEEEEEEEEE
T ss_pred EEEEEEEEECCCCCCCHHHHHHHHHHHCCCC-CCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf 8999999978977384899999999865986-304787669999977899899999999999986397654789999996
Q ss_pred CCC
Q ss_conf 179
Q gi|254780972|r 82 SSS 84 (84)
Q Consensus 82 ~~s 84 (84)
.+|
T Consensus 82 ~~s 84 (85)
T 1gtd_A 82 XSS 84 (85)
T ss_dssp C--
T ss_pred CCC
T ss_conf 688
No 3
>>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protein structural and functional analyses; 2.30A {Methanocaldococcus jannaschii} (A:)
Probab=99.97 E-value=3e-30 Score=196.68 Aligned_cols=83 Identities=46% Similarity=0.817 Sum_probs=81.7
Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 95999999958866687789999998628864200002301899997389989999999999998479761247999999
Q gi|254780972|r 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESICQNLLANPVIEDYDIKVQ 80 (84)
Q Consensus 1 m~k~~V~V~lK~gVlDPqG~aV~~aL~~lG~~~v~~vr~GK~iei~i~~~~~~~a~~~v~~~c~~lLaNpvIE~y~i~i~ 80 (84)
||+++|+|+|||||+||||+||+++|+++||.+|++||+||+|+|++++.|++.|++++++||++||+|||||+|+|+++
T Consensus 1 M~~~~V~V~~K~gVlDPqG~ai~~al~~lG~~~V~~vRvgK~~~~~i~~~~~e~a~~~v~~i~~~LLaNpvIe~y~i~i~ 80 (83)
T 2yx5_A 1 MYKATVIIKLKKGVLNPEGRTIQRALNFLGFNNVKEVQTYKMIDIIMEGENEEKVKEEVEEMCKKLLANPVIHDYEIKVE 80 (83)
T ss_dssp CEEEEEEEEECTTCCCHHHHHHHHHHHHTTCTTCCCCCCCEEEEEEEC-CCHHHHHHHHHHHHHHTTCCTTTEEEEEEEE
T ss_pred CEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 96999999989977382799999999864975666357555999998579989999999999998639864378999999
Q ss_pred ECC
Q ss_conf 717
Q gi|254780972|r 81 KSS 83 (84)
Q Consensus 81 e~~ 83 (84)
+.+
T Consensus 81 ~~e 83 (83)
T 2yx5_A 81 KIE 83 (83)
T ss_dssp ECC
T ss_pred ECC
T ss_conf 769
No 4
>>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, FGAM, structural protein; 2.00A {Bacillus subtilis} (A:)
Probab=99.96 E-value=1.4e-29 Score=192.77 Aligned_cols=83 Identities=35% Similarity=0.630 Sum_probs=78.8
Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 95999999958866687789999998628864200002301899997389989999999999998479761247999999
Q gi|254780972|r 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESICQNLLANPVIEDYDIKVQ 80 (84)
Q Consensus 1 m~k~~V~V~lK~gVlDPqG~aV~~aL~~lG~~~v~~vr~GK~iei~i~~~~~~~a~~~v~~~c~~lLaNpvIE~y~i~i~ 80 (84)
.|+++|+|+|||||+||||+||+++|++|||++|++||+||+|++++++++++ |.+++++||++||+|||||+|+|+++
T Consensus 1 ~~~~~V~V~lK~gVlDPqG~aI~~aL~~lG~~~V~~VRvGK~~~l~i~~~~ee-a~~~v~~~c~~LLaNpvIe~y~i~i~ 79 (84)
T 1t4a_A 1 XYKVKVYVSLKESVLDPQGSAVQHALHSXTYNEVQDVRIGKYXELTIEKSDRD-LDVLVKEXCEKLLANTVIEDYRYEVE 79 (84)
T ss_dssp CEEEEEEEEECTTSCCHHHHHHHHHHHHTTCTTEEEEEEEEEEEEEECCCSSC-HHHHHHHHHHHTTCCTTTEEEEEEEE
T ss_pred CEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCHHH-HHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 96999999989987281799999999865975664468876999998188599-99999999998549755278999999
Q ss_pred ECCC
Q ss_conf 7179
Q gi|254780972|r 81 KSSS 84 (84)
Q Consensus 81 e~~s 84 (84)
+.++
T Consensus 80 ~~e~ 83 (84)
T 1t4a_A 80 EVVA 83 (84)
T ss_dssp C---
T ss_pred EEEC
T ss_conf 9724
No 5
>>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A (A:)
Probab=99.96 E-value=7.5e-29 Score=188.56 Aligned_cols=79 Identities=35% Similarity=0.583 Sum_probs=75.5
Q ss_pred EEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 59999999588666877899999986288642000023018999973899899999999999984797612479999997
Q gi|254780972|r 2 IKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESICQNLLANPVIEDYDIKVQK 81 (84)
Q Consensus 2 ~k~~V~V~lK~gVlDPqG~aV~~aL~~lG~~~v~~vr~GK~iei~i~~~~~~~a~~~v~~~c~~lLaNpvIE~y~i~i~e 81 (84)
|+++|+|+||+|||||||+||+++|++||| +|++||+||+|+|++++++++.| +++++||++||+|||||+|+|++++
T Consensus 4 ykv~V~V~lK~gVlDPqG~aI~~aL~~lG~-~V~~VR~GK~iel~i~~~~~~~a-~~v~~~c~klLaNpvIE~y~i~i~e 81 (84)
T 2dgb_A 4 YQATLLIELKKGILDPQGRAVEGVLKDLGH-PVEEVRVGKVLEIVFPAENLLEA-EEKAKAXGALLANPVXEVYALEALK 81 (84)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTC-CCSEEEEEEEEEEEEECSSHHHH-HHHHHHHHHHHSCTTTEEEEEEEEE
T ss_pred EEEEEEEEECCCCCCCHHHHHHHHHHHCCC-CCCEEEEEEEEEEEECCCCHHHH-HHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf 799999998997728279999999997599-75448856699999868998999-9999998887499733789999973
Q ss_pred C
Q ss_conf 1
Q gi|254780972|r 82 S 82 (84)
Q Consensus 82 ~ 82 (84)
.
T Consensus 82 ~ 82 (84)
T 2dgb_A 82 E 82 (84)
T ss_dssp E
T ss_pred E
T ss_conf 0
No 6
>>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS subunit; TM1244, PURS subunit (EC 6.3.5.3), structural genomics; 1.90A {Thermotoga maritima MSB8} (A:)
Probab=99.95 E-value=3.5e-28 Score=184.72 Aligned_cols=79 Identities=27% Similarity=0.538 Sum_probs=78.0
Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 9599999995886668778999999862886420000230189999738998999999999999847976124799999
Q gi|254780972|r 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESICQNLLANPVIEDYDIKV 79 (84)
Q Consensus 1 m~k~~V~V~lK~gVlDPqG~aV~~aL~~lG~~~v~~vr~GK~iei~i~~~~~~~a~~~v~~~c~~lLaNpvIE~y~i~i 79 (84)
||+++|+|+|||||+||||+||+++|+++||.++++||+||+|+++++++|++.|++++++||++||+|||||+|+|++
T Consensus 15 ~~~~~I~V~lK~gV~DPqG~ai~~aL~~lG~~~V~~vrvgK~~~~~i~~~~~e~a~~~v~~ia~~lLaNpvIe~y~i~i 93 (94)
T 1vq3_A 15 LFKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGKSIHLEVEAENKEKAYEIVKKACEELLVNPVVEEYEVRE 93 (94)
T ss_dssp EEEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCEEEEEEEEEEEEEEECSSHHHHHHHHHHHHHHTTSCTTTEEEEEEE
T ss_pred EEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 3799999997998707089999999987478664606867899999806887899999999999871787513799997
No 7
>>1t3t_A Phosphoribosylformylglycinamidine synthase; PURL, FGAM synthetase, PURS, PURQ, formyl glycinamide, ligase; HET: CYG ADP; 1.90A {Salmonella typhimurium} (A:1-158)
Probab=87.14 E-value=2.6 Score=23.41 Aligned_cols=66 Identities=14% Similarity=0.263 Sum_probs=51.4
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 99999958866687789999998628864200002301899997389989999999999998479761247
Q gi|254780972|r 4 ANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESICQNLLANPVIED 74 (84)
Q Consensus 4 ~~V~V~lK~gVlDPqG~aV~~aL~~lG~~~v~~vr~GK~iei~i~~~~~~~a~~~v~~~c~~lLaNpvIE~ 74 (84)
..++|.|+.|..-|=..-...-.++.|++.|..+--|..|.+..+.-+.++...- ..+|.....|.
T Consensus 81 ~~~~V~PR~gtiSPWSSkAtdI~~~cGL~~V~RIERg~~y~i~~~~l~~~~~~~~-----~~~LhDRMTE~ 146 (158)
T 1t3t_A 81 KLLLVTPRPGTISPWSSKATDIAHNCGLQQVDRLERGVAYYIEASTLTAEQWRQV-----AAELHDRMMET 146 (158)
T ss_dssp EEEEEEECTTCCCHHHHHHHHHHHHTTCTTEEEEEEEEEEEEECTTCCHHHHHHH-----HHTTSCTTTEE
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCHHHHHHH-----HHHHCCCCCHH
T ss_conf 6899978998878666779999997697342369756789995699998999998-----88623854031
No 8
>>3bn7_A Ferredoxin-like protein; NP_421070.1, stress responsive A/B barrel domain, structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus CB15} (A:)
Probab=77.14 E-value=3.4 Score=22.70 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=34.8
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHCC-CCCCCEEEEEEE
Q ss_conf 999999588666877899999986288-642000023018
Q gi|254780972|r 4 ANVVVKLKKDVLDPQGKALKTALSNIG-FHNINQIRQGKI 42 (84)
Q Consensus 4 ~~V~V~lK~gVlDPqG~aV~~aL~~lG-~~~v~~vr~GK~ 42 (84)
=.|..++|+++...+-+++..+|..|+ ..++..++.|+-
T Consensus 23 HiVlfk~k~~~~~e~~~~~~~~l~~L~~ip~i~~~~~G~~ 62 (120)
T 3bn7_A 23 HQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVP 62 (120)
T ss_dssp EEEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 9999998999999999999999877635987528999246
No 9
>>3iyd_A DNA-directed RNA polymerase subunit alpha; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12} (A:1-48,A:181-246)
Probab=70.61 E-value=9.1 Score=20.24 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHCCC----CCCCEEEEEEE-------EEEEECCC-CHHHHHHHHHHHHHHHC
Q ss_conf 778999999862886----42000023018-------99997389-98999999999999847
Q gi|254780972|r 17 PQGKALKTALSNIGF----HNINQIRQGKI-------FDIEMDET-LSDIAEEELESICQNLL 67 (84)
Q Consensus 17 PqG~aV~~aL~~lG~----~~v~~vr~GK~-------iei~i~~~-~~~~a~~~v~~~c~~lL 67 (84)
-+|.|+.+||++.=. -.|.++|+|+. +++|=+++ +.++|..++-++.-+++
T Consensus 34 G~g~TlGNaLRRvLLkkVnY~VE~~rv~~~~~~erLileI~TnGsI~P~dAl~~Aa~iL~~~f 96 (114)
T 3iyd_A 34 GFGHTLGNALRRILLERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQL 96 (114)
T ss_dssp THHHHHHHTTTTSSSSCEEECCCBCCCSSCSCCBCCCEEEECCSSSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 617677889999998889888986033466754423799831675033633789999999999
No 10
>>1q4r_A Protein AT3G17210; center for eukaryotic structural genomics, structural genomics, protein structure initiative CESG, unknown function; 1.90A {Arabidopsis thaliana} (A:)
Probab=62.98 E-value=12 Score=19.50 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=36.5
Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHCC--CCCCCEEEEEEE
Q ss_conf 959999999588666877899999986288--642000023018
Q gi|254780972|r 1 MIKANVVVKLKKDVLDPQGKALKTALSNIG--FHNINQIRQGKI 42 (84)
Q Consensus 1 m~k~~V~V~lK~gVlDPqG~aV~~aL~~lG--~~~v~~vr~GK~ 42 (84)
|++=-|..++|+++.+-+-+++..+|..|- ..++..+..|+-
T Consensus 10 mI~HiVlfklk~~~~~~~~~~~~~~l~~l~~~ipgi~~~~~G~~ 53 (112)
T 1q4r_A 10 PVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPXKAFHWGKD 53 (112)
T ss_dssp CEEEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEEC
T ss_pred CEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 77999999989999999999999999986542974167652354
No 11
>>1y51_A Phosphocarrier protein HPR; bacillus stearothermophilus HPR F29W mutant, transport protein; 1.65A {Geobacillus stearothermophilus} PDB: 1y50_A 1y4y_A 2nzu_L* 1rzr_T* 2nzv_L* 2oen_L* 2fep_S* (A:)
Probab=61.67 E-value=15 Score=19.02 Aligned_cols=64 Identities=16% Similarity=0.080 Sum_probs=46.1
Q ss_pred CEEEEEEEEECCCCCC-HHHHHHHHHHHHCCCCCC-----------------CEEEEEEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 9599999995886668-778999999862886420-----------------0002301899997389989999999999
Q gi|254780972|r 1 MIKANVVVKLKKDVLD-PQGKALKTALSNIGFHNI-----------------NQIRQGKIFDIEMDETLSDIAEEELESI 62 (84)
Q Consensus 1 m~k~~V~V~lK~gVlD-PqG~aV~~aL~~lG~~~v-----------------~~vr~GK~iei~i~~~~~~~a~~~v~~~ 62 (84)
|.+.++.|..+-|+.- |.+.-++.+-+--.--.+ -+++.|..++|.+++.|+++|.+.+..+
T Consensus 1 M~~~~~~i~~~~GlHaRpAa~lv~~a~~f~~~V~i~~~~~~~~akSil~il~L~~~~G~~i~i~~~G~de~~Al~~l~~~ 80 (88)
T 1y51_A 1 MAEKTFKVVSDSGIHARPATILVQTASKWNSEIQLEYNGKTVNLKSIMGVMSLGIPKGATIKITAEGADAAEAMAALTDT 80 (88)
T ss_dssp -CEEEEEBCCTTCSCHHHHHHHHHHHHTSSSEEEEEETTEEEETTCHHHHHHTCCCTTCEEEEEEESTTHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 96699998389855473899999999758998999989989802819999865999989999999887899999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780972|r 63 CQ 64 (84)
Q Consensus 63 c~ 64 (84)
..
T Consensus 81 l~ 82 (88)
T 1y51_A 81 LA 82 (88)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 12
>>3bde_A MLL5499 protein; NP_106155.1, domain of unknown function with A ferredoxin- like fold, stress responsive A/B barrel domain; 1.79A {Mesorhizobium loti MAFF303099} (A:)
Probab=61.25 E-value=14 Score=19.06 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=34.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHC--CCCCCCEEEEEEE
Q ss_conf 99999958866687789999998628--8642000023018
Q gi|254780972|r 4 ANVVVKLKKDVLDPQGKALKTALSNI--GFHNINQIRQGKI 42 (84)
Q Consensus 4 ~~V~V~lK~gVlDPqG~aV~~aL~~l--G~~~v~~vr~GK~ 42 (84)
=.|..++|+++.+-|-+++.+++..| ...++..++.|+-
T Consensus 23 HiVlfklk~~~t~e~~~~~~~~l~~l~~~ipgi~~~~~G~~ 63 (120)
T 3bde_A 23 HTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQ 63 (120)
T ss_dssp EEEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEEC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 99999988999989999999999987741888515999832
No 13
>>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} (A:)
Probab=61.02 E-value=14 Score=19.17 Aligned_cols=41 Identities=12% Similarity=0.280 Sum_probs=35.2
Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHCC--CCCCCEEEEEE
Q ss_conf 959999999588666877899999986288--64200002301
Q gi|254780972|r 1 MIKANVVVKLKKDVLDPQGKALKTALSNIG--FHNINQIRQGK 41 (84)
Q Consensus 1 m~k~~V~V~lK~gVlDPqG~aV~~aL~~lG--~~~v~~vr~GK 41 (84)
|.+=-|..++|+++.+.+-..+.++|..|- ..++..++.|+
T Consensus 8 ~i~HiV~fk~k~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~ 50 (108)
T 1tr0_A 8 LVKHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGT 50 (108)
T ss_dssp CEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred CEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHEEEEEEC
T ss_conf 0999999998999998999999999998762384433998865
No 14
>>3bgu_A Ferredoxin-like protein of unknown function; YP_288824.1, stress responsive A/B barrel domain, structural genomics; 1.50A {Thermobifida fusca YX} (A:)
Probab=59.53 E-value=16 Score=18.80 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=35.5
Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHC-C-CCCCCEEEEEEE
Q ss_conf 95999999958866687789999998628-8-642000023018
Q gi|254780972|r 1 MIKANVVVKLKKDVLDPQGKALKTALSNI-G-FHNINQIRQGKI 42 (84)
Q Consensus 1 m~k~~V~V~lK~gVlDPqG~aV~~aL~~l-G-~~~v~~vr~GK~ 42 (84)
|.+=.|..++|+++.+-+-+++..+|..| + ..++..+..|+-
T Consensus 21 mI~HiVlfk~k~~~t~e~i~~~~~~l~~l~~~ip~i~~~~~G~~ 64 (116)
T 3bgu_A 21 GIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGAD 64 (116)
T ss_dssp EEEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEEC
T ss_pred CEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 75999999989999999999999999976651971399982467
No 15
>>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} (B:1-94)
Probab=59.36 E-value=15 Score=19.04 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=27.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHH-CCCCCEE
Q ss_conf 8999973899899999999999984-7976124
Q gi|254780972|r 42 IFDIEMDETLSDIAEEELESICQNL-LANPVIE 73 (84)
Q Consensus 42 ~iei~i~~~~~~~a~~~v~~~c~~l-LaNpvIE 73 (84)
++.|++.-.+.+.|++-+.++|+++ |-||.+=
T Consensus 35 QlsftLPv~~~~~AeeAA~~la~KMGle~p~Vv 67 (94)
T 1xrs_B 35 QLSFTLPLKNNERSAEAAKQIALKMGLEEPSVV 67 (94)
T ss_dssp EEEEEESSCSSHHHHHHHHHHHHTTSSCCCEEE
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 401005456728899999999997388553148
No 16
>>3ccd_A Phosphocarrier protein HPR; succinimide, isoaspartate, protein damage, autophosphatase, transferase; 1.00A {Escherichia coli} PDB: 1cm3_A 1cm2_A 1ggr_B 1hdn_A 1j6t_B 1pfh_A* 1poh_A 1vrc_C 2jel_P 3eza_B 3ezb_B 3eze_B 1opd_A (A:)
Probab=58.94 E-value=16 Score=18.74 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=44.3
Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHCCCC-------------CC-----CEEEEEEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 95999999958866687789999998628864-------------20-----0002301899997389989999999999
Q gi|254780972|r 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFH-------------NI-----NQIRQGKIFDIEMDETLSDIAEEELESI 62 (84)
Q Consensus 1 m~k~~V~V~lK~gVlDPqG~aV~~aL~~lG~~-------------~v-----~~vr~GK~iei~i~~~~~~~a~~~v~~~ 62 (84)
|.+.++.|....|+.--....+-+...+.+-+ ++ -+++.|-.+.|..+++|+++|.+.+..+
T Consensus 1 M~~~~~~i~~~~GlHaRpAa~lv~~a~~~~~~v~i~~~~~~v~akSil~il~L~i~~G~~i~i~~~G~de~~Al~~l~~~ 80 (85)
T 3ccd_A 1 MFEQEVTITAPNGLDTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKL 80 (85)
T ss_dssp CEEEEEECCSTTCSCHHHHHHHHHHHTTSCSEEEEEETTEEEETTCHHHHTTSCCCTTCEEEEEEESTTHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 95689998589966372999999999858998999989989947839999833888999999999788999999999999
Q ss_pred H
Q ss_conf 9
Q gi|254780972|r 63 C 63 (84)
Q Consensus 63 c 63 (84)
-
T Consensus 81 l 81 (85)
T 3ccd_A 81 M 81 (85)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 17
>>1ptf_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 1.60A {Enterococcus faecalis} (A:)
Probab=52.80 E-value=21 Score=18.14 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=46.4
Q ss_pred CEEEEEEEEECCCCCC-HHHHHHHHHHHHCCCC-CC-----------------CEEEEEEEEEEEECCCCHHHHHHHHHH
Q ss_conf 9599999995886668-7789999998628864-20-----------------000230189999738998999999999
Q gi|254780972|r 1 MIKANVVVKLKKDVLD-PQGKALKTALSNIGFH-NI-----------------NQIRQGKIFDIEMDETLSDIAEEELES 61 (84)
Q Consensus 1 m~k~~V~V~lK~gVlD-PqG~aV~~aL~~lG~~-~v-----------------~~vr~GK~iei~i~~~~~~~a~~~v~~ 61 (84)
|.+.++.|..+-|+.- |.+.-++.+ ++..-+ .+ -+++.|..++|.+++.|+++|.+.+..
T Consensus 1 M~~~~~~i~~~~GlHaRpAa~lv~~a-~~~~~~v~i~~~~~~~~akSil~ll~L~~~~G~~i~i~~~G~de~~al~~l~~ 79 (88)
T 1ptf_A 1 MEKKEFHIVAETGIHARPATLLVQTA-SKFNSDINLEYKGKSVNLKSIMGVMSLGVGQGSDVTITVDGADEAEGMAAIVE 79 (88)
T ss_dssp CEEEEEECCCTTCSCHHHHHHHHHHH-TTCSSEEEEEETTEEEETTCHHHHHHHCCCTTCEEEEEEESTTHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH-HHCCCEEEEEECCEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 96689999389976462999999999-76899799998999981180999986599998999999988789999999999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780972|r 62 ICQN 65 (84)
Q Consensus 62 ~c~~ 65 (84)
+.+.
T Consensus 80 ~l~~ 83 (88)
T 1ptf_A 80 TLQK 83 (88)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9987
No 18
>>1sph_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 2.00A {Bacillus subtilis} (A:)
Probab=49.73 E-value=23 Score=17.85 Aligned_cols=64 Identities=20% Similarity=0.206 Sum_probs=45.8
Q ss_pred CEEEEEEEEECCCCCC-HHHHHHHHHHHHCCCC-CC-----------------CEEEEEEEEEEEECCCCHHHHHHHHHH
Q ss_conf 9599999995886668-7789999998628864-20-----------------000230189999738998999999999
Q gi|254780972|r 1 MIKANVVVKLKKDVLD-PQGKALKTALSNIGFH-NI-----------------NQIRQGKIFDIEMDETLSDIAEEELES 61 (84)
Q Consensus 1 m~k~~V~V~lK~gVlD-PqG~aV~~aL~~lG~~-~v-----------------~~vr~GK~iei~i~~~~~~~a~~~v~~ 61 (84)
|...++.|..+.|+.- |.+.-+..+ ++..-+ .+ -+++.|-.+++.++++|+++|.+.+..
T Consensus 1 M~~~~~~i~~~~GlHaRpAa~lv~~a-~~~~~~I~i~~~~~~~~akSil~ll~L~~~~G~~i~i~~~G~de~~Al~~l~~ 79 (88)
T 1sph_A 1 MAQKTFKVTADSGIHARPATVLVQTA-SKYDADVNLEYNGKTVNLKDIMGVMSLGIAKGAEITISASGADENDALNALEE 79 (88)
T ss_dssp -CEEEEEBCCTTCSCHHHHHHHHHHH-TTSSSEEEEEETTEEEETTCHHHHHHHCCCTTCEEEEEEESTTHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH-HHCCCEEEEEECCEEECCHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 97689999079955474899999999-76899899998999984275999985599998999999978489999999999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780972|r 62 ICQN 65 (84)
Q Consensus 62 ~c~~ 65 (84)
+-+.
T Consensus 80 ~l~~ 83 (88)
T 1sph_A 80 TMKS 83 (88)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9986
No 19
>>2qyc_A Ferredoxin-like protein; NP_888056.1, stress responsive A/B barrel domain, structural genomics; HET: MSE; 1.90A {Bordetella bronchiseptica RB50} (A:)
Probab=47.56 E-value=24 Score=17.74 Aligned_cols=40 Identities=5% Similarity=-0.015 Sum_probs=33.9
Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHCC--CCCCCEEEEEEE
Q ss_conf 9999999588666877899999986288--642000023018
Q gi|254780972|r 3 KANVVVKLKKDVLDPQGKALKTALSNIG--FHNINQIRQGKI 42 (84)
Q Consensus 3 k~~V~V~lK~gVlDPqG~aV~~aL~~lG--~~~v~~vr~GK~ 42 (84)
+=-|.+++|+++.+-|-+++.++|..|- ..++..+..|+-
T Consensus 6 ~HiVlfk~k~~~~~e~~~~~~~~l~~l~~~ipgi~~~~~G~~ 47 (103)
T 2qyc_A 6 LHVVXXEFDDGIDAGFFRTVDEYVARXKRECDGLLLYHFGEN 47 (103)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEEC
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 999999989999999999999999986416984189999524
No 20
>>3bb5_A Stress responsive alpha-beta protein; YP_511867.1, dimeric ferredoxin-like protein of unknown function, stress responsive A/B barrel domain; HET: CIT; 2.30A {Jannaschia SP} (A:)
Probab=47.19 E-value=14 Score=19.11 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=33.6
Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHCC--CCCCCEEEEEEE
Q ss_conf 9999999588666877899999986288--642000023018
Q gi|254780972|r 3 KANVVVKLKKDVLDPQGKALKTALSNIG--FHNINQIRQGKI 42 (84)
Q Consensus 3 k~~V~V~lK~gVlDPqG~aV~~aL~~lG--~~~v~~vr~GK~ 42 (84)
+=.|.+++|+++.+-+-+++.++|..|- ..++..++.|+-
T Consensus 22 ~HiV~fk~k~~~t~e~~~~~~~~l~~l~~~ip~i~~~~~G~~ 63 (121)
T 3bb5_A 22 YHLVXLEPEGEGAXDRIXEAXAILDGLAPELPGLTEFRHGPN 63 (121)
T ss_dssp EEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEB
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 699999988999999999999999976523997289999615
No 21
>>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (A:1-47,A:173-315)
Probab=41.05 E-value=32 Score=17.06 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHC---------CCCCCCEEEEEE-------EEEEEECCC-CHHHHHHHHHHHHHHH
Q ss_conf 789999998628---------864200002301-------899997389-9899999999999984
Q gi|254780972|r 18 QGKALKTALSNI---------GFHNINQIRQGK-------IFDIEMDET-LSDIAEEELESICQNL 66 (84)
Q Consensus 18 qG~aV~~aL~~l---------G~~~v~~vr~GK-------~iei~i~~~-~~~~a~~~v~~~c~~l 66 (84)
||.||.++|++. +| .|.+.|+|+ .+++|-++. +..+|..++-++..+.
T Consensus 32 ~g~TiGN~lRR~LLssPV~kVnY-~Ve~~~v~~~~~~ekL~leI~TdGsItP~eAl~~Aa~iL~~~ 96 (190)
T 2a6h_A 32 FGVTLGNPLRRILLSSPVRRVAF-QVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREH 96 (190)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEE-EEEECCBTTBCCCEEEEEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCHHHHEEE-EEEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 17577889999988561110445-788852177776661059995488645233599999999988
No 22
>>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} (A:137-189,A:336-413)
Probab=36.42 E-value=36 Score=16.79 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCC-CHHHHHHHHHHHHHHH
Q ss_conf 789999998628864200002301899997389-9899999999999984
Q gi|254780972|r 18 QGKALKTALSNIGFHNINQIRQGKIFDIEMDET-LSDIAEEELESICQNL 66 (84)
Q Consensus 18 qG~aV~~aL~~lG~~~v~~vr~GK~iei~i~~~-~~~~a~~~v~~~c~~l 66 (84)
-|+-|-+|+...|-+++-.|.-||-++.+++-- +++.....+..+...+
T Consensus 20 iG~lIa~A~~kVG~~GvItvee~~~~~~~levvEd~~~I~~Ri~qLr~~l 69 (131)
T 1we3_A 20 VGKLIADAMEKVGKEGIITVEESKSLETELKFVEKKEDIEARINGIKKEL 69 (131)
T ss_dssp HHHHHHHHHHTTCTTSEEEEEECSSSSCEEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 99999999998471124998616886315899748899999999888877
No 23
>>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma capricolum} (A:)
Probab=35.71 E-value=39 Score=16.56 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=38.7
Q ss_pred EEEEEEEECCCCCC-HHHHHHHHHHHHCCCC-------------CC-----CEEEEEEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 99999995886668-7789999998628864-------------20-----00023018999973899899999999999
Q gi|254780972|r 3 KANVVVKLKKDVLD-PQGKALKTALSNIGFH-------------NI-----NQIRQGKIFDIEMDETLSDIAEEELESIC 63 (84)
Q Consensus 3 k~~V~V~lK~gVlD-PqG~aV~~aL~~lG~~-------------~v-----~~vr~GK~iei~i~~~~~~~a~~~v~~~c 63 (84)
+.++.|..+.|+.- |.+.-++.+ +...-+ ++ -+++.|-.++|..+++|+++|.+.+..+-
T Consensus 2 ~~~~~v~~~~GlHaRpAa~lv~~a-~~~~~~I~i~~~~~~~~akSil~il~L~~~~G~~i~i~~~G~de~~Al~~l~~~l 80 (88)
T 1pch_A 2 KFSAIITDKVGLHARPASVLAKEA-SKFSSNITIIANEKQGNLKSIMNVMAMAIKTGTEITIQADGNDADQAIQAIKQTM 80 (88)
T ss_dssp EEEEECCCTTCSCHHHHHHHHHHH-TTCSSEEEEEETTEEEETTCHHHHHHHCCCTTCEEEEEEESTTHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH-HHCCCEEEEEECCEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 079999689986473899999999-7589889999899898028299998559999999999997879999999999999
No 24
>>3ihs_A Phosphocarrier protein HPR; dimerization domain SWAP beta strand, IDP01131, structural genomics; HET: MSE; 1.15A {Bacillus anthracis} PDB: 1zvv_W* 1mo1_A 1mu4_A 2rlz_A 2ak7_A* 1k1c_A (A:)
Probab=33.86 E-value=42 Score=16.38 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=39.7
Q ss_pred CEEEEEEEEECCCCCC-HHHHHHHHHHHHCCCC-CC-----------------CEEEEEEEEEEEECCCCHHHHHHHHHH
Q ss_conf 9599999995886668-7789999998628864-20-----------------000230189999738998999999999
Q gi|254780972|r 1 MIKANVVVKLKKDVLD-PQGKALKTALSNIGFH-NI-----------------NQIRQGKIFDIEMDETLSDIAEEELES 61 (84)
Q Consensus 1 m~k~~V~V~lK~gVlD-PqG~aV~~aL~~lG~~-~v-----------------~~vr~GK~iei~i~~~~~~~a~~~v~~ 61 (84)
|.+.++.|..+.|+.= |.+.-+.-+ .+..-+ .+ -+++-|-.++|..++.|+++|.+.+.+
T Consensus 25 ~~~~~~~I~n~~GlHARPAa~iv~~a-~~~~~~v~i~~~~~~v~akSi~~ll~Lg~~~G~~i~i~~~G~de~~Al~~i~~ 103 (106)
T 3ihs_A 25 XVQKRVQVSLKNGLQARPAALFVQEA-NRFHADIFIEKDGKTVNAKSIXGIXSLAIGTGSXITITTEGSDAEEALEALAA 103 (106)
T ss_dssp CEEEEEECCCTTCSCHHHHHHHHHHH-HTSSSEEEEEETTEEEETTCHHHHHHTCCCTTCEEEEEEESTTHHHHHHHHHH
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHH-HHCCCEEEEEECCEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 28989998799966373999999999-84898499998999982080999984578999999999978789999999999
Q ss_pred H
Q ss_conf 9
Q gi|254780972|r 62 I 62 (84)
Q Consensus 62 ~ 62 (84)
+
T Consensus 104 ~ 104 (106)
T 3ihs_A 104 Y 104 (106)
T ss_dssp H
T ss_pred H
T ss_conf 8
No 25
>>1kkl_H Phosphocarrier protein HPR; phosphorylation, protein kinase, bacteria, protein/protein interaction, transferase; 2.80A {Bacillus subtilis} (H:)
Probab=33.15 E-value=43 Score=16.31 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=44.4
Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHCCCC-CC-----------------CEEEEEEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 95999999958866687789999998628864-20-----------------0002301899997389989999999999
Q gi|254780972|r 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFH-NI-----------------NQIRQGKIFDIEMDETLSDIAEEELESI 62 (84)
Q Consensus 1 m~k~~V~V~lK~gVlDPqG~aV~~aL~~lG~~-~v-----------------~~vr~GK~iei~i~~~~~~~a~~~v~~~ 62 (84)
|.+.++.|...-|+.--....+-+..+..+-+ .+ -+++.|..+++..++.|+++|.+.+.++
T Consensus 13 m~~~~~~i~~~~GlHaRpAa~iv~~a~~~~~~I~i~~~~~~v~akSil~ll~L~~~~G~~i~i~~~G~de~~Al~~l~~~ 92 (100)
T 1kkl_H 13 MAQKTFKVTADSGIHARPATVLVQTASKYDADVNLEYNGKTVNLKSIMGVMSLGIAKGAEITISASGADENDALNALEET 92 (100)
T ss_dssp --CEEEEBCCTTCSCHHHHHHHHHHHHTCSSEEEEEETTEEEETTCHHHHHHTCCCTTCEEEEEEESTTHHHHHHHHHHH
T ss_pred EEEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 68899999289965462899999999858988999989999843809999865999999999999786999999999999
Q ss_pred HHH
Q ss_conf 998
Q gi|254780972|r 63 CQN 65 (84)
Q Consensus 63 c~~ 65 (84)
-+.
T Consensus 93 l~~ 95 (100)
T 1kkl_H 93 MKS 95 (100)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 987
No 26
>>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} (A:)
Probab=31.36 E-value=46 Score=16.14 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHCCCCCCC---EE-----------------EEEEEEEEEECCCCHHHHHHHHHHHHHHH-CCC
Q ss_conf 7789999998628864200---00-----------------23018999973899899999999999984-797
Q gi|254780972|r 17 PQGKALKTALSNIGFHNIN---QI-----------------RQGKIFDIEMDETLSDIAEEELESICQNL-LAN 69 (84)
Q Consensus 17 PqG~aV~~aL~~lG~~~v~---~v-----------------r~GK~iei~i~~~~~~~a~~~v~~~c~~l-LaN 69 (84)
+.++++..-+..+|+..+. +. ..|.++||++...+.+++.+.+..++.+| |..
T Consensus 86 ~~~~~~~~~l~~~gl~~~~~~~k~R~~~~~~~~~i~lD~~~~~~~~~EiE~~~~~~~~~~~~~~~l~~~lgi~~ 159 (179)
T 1yem_A 86 GDFEKAVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIGDFVDIEVISDSPEEAKEKIWEVAKMLGLKE 159 (179)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECSCHHHHHHHHHHHHHHTTCCG
T ss_pred CCHHHHHHHHHHCCCEEEEEEEEEEEEEEECCEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf 66899998787479837789999999999799999998775889668999972788999999999999839491
No 27
>>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural proteomics in europe, spine, structural genomics, ligand transport; NMR {Staphylococcus aureus} (A:)
Probab=30.18 E-value=49 Score=16.02 Aligned_cols=65 Identities=12% Similarity=0.028 Sum_probs=40.7
Q ss_pred EEEEEEEECCCCCC-HHHHHHHHHHHHCCC------------CCC-----CEEEEEEEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99999995886668-778999999862886------------420-----000230189999738998999999999999
Q gi|254780972|r 3 KANVVVKLKKDVLD-PQGKALKTALSNIGF------------HNI-----NQIRQGKIFDIEMDETLSDIAEEELESICQ 64 (84)
Q Consensus 3 k~~V~V~lK~gVlD-PqG~aV~~aL~~lG~------------~~v-----~~vr~GK~iei~i~~~~~~~a~~~v~~~c~ 64 (84)
..++.|..+.|+.- |.+.-++.+-+--.- +++ -+++.|..++|..++.|+++|.+.+..+-+
T Consensus 3 ~~~~~v~~~~GlHaRpAa~lv~~a~~~~~~I~i~~~~~~~~akSil~ll~L~~~~G~~i~i~~~G~De~~Al~~l~~~l~ 82 (88)
T 1ka5_A 3 QNSYVIIDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNLKSIMGVMSLGVGKDAEITIYADGSDESDAIQAISDVLS 82 (88)
T ss_dssp EEEEEBCCTTCSCHHHHHHHHHHHHHHSSEEEEEETTEEEETTCHHHHHTTTCCTTCEEEEEEESSSHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 58999958997757399999999975899899998999985282999985599998999999978689999999999998
Q ss_pred HHC
Q ss_conf 847
Q gi|254780972|r 65 NLL 67 (84)
Q Consensus 65 ~lL 67 (84)
+=|
T Consensus 83 ~~~ 85 (88)
T 1ka5_A 83 KEG 85 (88)
T ss_dssp HHT
T ss_pred HCC
T ss_conf 658
No 28
>>1rjj_A Expressed protein; beta barrel, homodimer, structural genomics, protein structure initiative, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} (A:)
Probab=23.33 E-value=65 Score=15.28 Aligned_cols=77 Identities=18% Similarity=0.125 Sum_probs=47.6
Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEE------------EEEECCCCHHHH--------HHHHH
Q ss_conf 9599999995886668778999999862886420000230189------------999738998999--------99999
Q gi|254780972|r 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIF------------DIEMDETLSDIA--------EEELE 60 (84)
Q Consensus 1 m~k~~V~V~lK~gVlDPqG~aV~~aL~~lG~~~v~~vr~GK~i------------ei~i~~~~~~~a--------~~~v~ 60 (84)
|.+=.|..++|+++...+=+....+|..+ ..++..+..|+-+ -+...=+|.+.- ..++.
T Consensus 5 ~I~HiVlfk~k~~~~~e~i~~~l~~l~~~-ip~i~~~~~G~~~~~~~~~~~~~~~~l~~~F~~~~~l~~Y~~hP~H~~~~ 83 (111)
T 1rjj_A 5 GFKHLVVVKFKEDTKVDEILKGLENLVSQ-IDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFS 83 (111)
T ss_dssp EEEEEEEEECSSCCCHHHHHHHHHHHHGG-GGGSCEEEEEEECCSCTTTSTTCCEEEEEEESSHHHHHHHHTSHHHHHHH
T ss_pred CEEEEEEEEECCCCCHHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCHHHHHHHHCCHHHHHHH
T ss_conf 66899999989999999999999974613-98406899855778731125887689999977899999875798599999
Q ss_pred HHHHHHCCCCCEEEEEEE
Q ss_conf 999984797612479999
Q gi|254780972|r 61 SICQNLLANPVIEDYDIK 78 (84)
Q Consensus 61 ~~c~~lLaNpvIE~y~i~ 78 (84)
+....++..-++=||++.
T Consensus 84 ~~~~p~~~~~~~~Df~v~ 101 (111)
T 1rjj_A 84 AAFTAVIDKIVLLDFPVA 101 (111)
T ss_dssp HHHHHTCSEEEEEEEEEC
T ss_pred HHHHHHHCCEEEEEEECC
T ss_conf 999987533399946831
No 29
>>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A (A:)
Probab=22.17 E-value=54 Score=15.76 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHCCCCCCCEEEE---EEEEEEEECCC
Q ss_conf 7899999986288642000023---01899997389
Q gi|254780972|r 18 QGKALKTALSNIGFHNINQIRQ---GKIFDIEMDET 50 (84)
Q Consensus 18 qG~aV~~aL~~lG~~~v~~vr~---GK~iei~i~~~ 50 (84)
-...|+++|..+. +|.++++ .+...+..+..
T Consensus 18 C~~~ie~~l~~~~--GV~~v~v~~~~~~v~v~~d~~ 51 (75)
T 1yjr_A 18 CVHKIESSLTKHR--GILYCSVALATNKAHIKYDPE 51 (75)
T ss_dssp HHHHHHHHHTTST--TEEEEEEETTTTEEEEEECTT
T ss_pred HHHHHHHHHHCCC--CCEEEEEECCCCEEEEEECCC
T ss_conf 9999999985289--956999987799999998999
No 30
>>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Streptococcus pneumoniae TIGR4} (A:)
Probab=21.49 E-value=42 Score=16.41 Aligned_cols=53 Identities=9% Similarity=0.160 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 6877899999986288642000023018999973899899999999999984797612479
Q gi|254780972|r 15 LDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESICQNLLANPVIEDY 75 (84)
Q Consensus 15 lDPqG~aV~~aL~~lG~~~v~~vr~GK~iei~i~~~~~~~a~~~v~~~c~~lLaNpvIE~y 75 (84)
.||.....-..+..+...-...-+.|+. ..++..++...+-+++-.||+|-+|
T Consensus 34 ~d~~~~~l~~ef~~~q~~~~~~q~~g~~--------~~~e~~~~~~~l~~~i~~n~~v~~y 86 (113)
T 2iaz_A 34 ADAEASKIFTDYLAFQEEIQKLAQTGQX--------PDASFQAKXEGFGKQIQGNSLLSEF 86 (113)
T ss_dssp HCHHHHHHHHHHHHHGGGTTTTCC------------CCHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 4999999999999999999999885999--------9799999999999998668999999
No 31
>>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} (A:)
Probab=21.17 E-value=72 Score=15.02 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=12.6
Q ss_pred HHHHHHHHHHC-CCCCCCEEEEEEEEEEEECC
Q ss_conf 89999998628-86420000230189999738
Q gi|254780972|r 19 GKALKTALSNI-GFHNINQIRQGKIFDIEMDE 49 (84)
Q Consensus 19 G~aV~~aL~~l-G~~~v~~vr~GK~iei~i~~ 49 (84)
...|+++|..+ |...+.==...+...+..+.
T Consensus 17 ~~~ie~~l~~~~GV~~v~v~~~~~~~~v~~d~ 48 (69)
T 2qif_A 17 VKAVETSVGELDGVSAVHVNLEAGKVDVSFDA 48 (69)
T ss_dssp HHHHHHHHHTSTTEEEEEEETTTTEEEEEECT
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCEEEEEECC
T ss_conf 99999999719994799998879999999899
Done!