RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780972|ref|YP_003065385.1|
phosphoribosylformylglycinamidine synthase, PurS protein [Candidatus
Liberibacter asiaticus str. psy62]
         (84 letters)



>gnl|CDD|145710 pfam02700, PurS, Phosphoribosylformylglycinamidine (FGAM)
          synthase.  This family forms a component of the de novo
          purine biosynthesis pathway.
          Length = 80

 Score =  102 bits (256), Expect = 3e-23
 Identities = 36/79 (45%), Positives = 54/79 (68%)

Query: 3  KANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62
          KA V V LK  VLDPQG+A+K AL  +G+  +  +R GK  ++ ++    + AEE++E +
Sbjct: 2  KAKVYVTLKPGVLDPQGEAIKKALHRLGYEGVEDVRIGKYIELTLEAEDEEEAEEQVEEM 61

Query: 63 CQNLLANPVIEDYDIKVQK 81
          C  LLANPVIEDY I++++
Sbjct: 62 CDKLLANPVIEDYRIELEE 80


>gnl|CDD|32013 COG1828, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase,
          PurS component [Nucleotide transport and metabolism].
          Length = 83

 Score = 89.1 bits (221), Expect = 2e-19
 Identities = 35/81 (43%), Positives = 59/81 (72%)

Query: 1  MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
          M K  V V LK  VLDP+G+ ++ AL  +G++ ++ +R GK+ ++E+D    + AEEE++
Sbjct: 1  MYKVRVYVTLKPGVLDPEGETIEKALHRLGYNEVSDVRVGKVIELELDAESEEKAEEEVK 60

Query: 61 SICQNLLANPVIEDYDIKVQK 81
           +C+ LLANPVIEDY+++V++
Sbjct: 61 EMCEKLLANPVIEDYEVEVEE 81


>gnl|CDD|35579 KOG0358, KOG0358, KOG0358, Chaperonin complex component, TCP-1
           delta subunit (CCT4) [Posttranslational modification,
           protein turnover, chaperones].
          Length = 534

 Score = 24.9 bits (54), Expect = 4.3
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 12/72 (16%)

Query: 5   NVVVKLKK---DVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELES 61
           N+  K+KK   +VL  Q   L+ A+S++  H + +++   I DIE          E++E 
Sbjct: 280 NMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIE---------REDIEF 330

Query: 62  ICQNLLANPVIE 73
           IC+ L   P+ +
Sbjct: 331 ICKTLGCKPIAD 342


>gnl|CDD|37167 KOG1956, KOG1956, KOG1956, DNA topoisomerase III alpha
           [Replication, recombination and repair].
          Length = 758

 Score = 24.9 bits (54), Expect = 5.0
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 28  NIGFHNINQIRQGKIFDIEMDETLSDIAEEELESICQNL 66
           NIG+  I+  R  K          S+I    ++S  +NL
Sbjct: 122 NIGWEIIDVCRAVKRLLQVRRARFSEITRSAIKSAARNL 160


>gnl|CDD|34167 COG4502, COG4502, Uncharacterized protein conserved in bacteria
          [Function unknown].
          Length = 180

 Score = 24.2 bits (52), Expect = 7.1
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 41 KIFDIEMDETLSDIAEEELESICQNLLANPVIEDYDIKVQK 81
          K   I+MD  L+D+  E ++    N+  + +++  DIK   
Sbjct: 4  KTIAIDMDTVLADLLREWVKRY--NIYKDKLLKMSDIKGWD 42


>gnl|CDD|147149 pfam04843, Herpes_teg_N, Herpesvirus tegument protein, N-terminal
          conserved region. 
          Length = 172

 Score = 24.1 bits (53), Expect = 8.1
 Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 13 DVLDPQGKALKTALSNIGFHNINQIRQG 40
           VL+ +G  L   L   G   + Q  Q 
Sbjct: 44 AVLE-EGARLDAILRTSGRLGLPQYAQL 70


>gnl|CDD|144664 pfam01153, Glypican, Glypican. 
          Length = 559

 Score = 23.9 bits (52), Expect = 9.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 46 EMDETLSDIAEEELESICQ 64
          EM+E LS  +  + E + Q
Sbjct: 66 EMEERLSLQSRVDFEQLLQ 84


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.313    0.132    0.349 

Gapped
Lambda     K      H
   0.267   0.0773    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 935,723
Number of extensions: 40235
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 25
Length of query: 84
Length of database: 6,263,737
Length adjustment: 54
Effective length of query: 30
Effective length of database: 5,096,851
Effective search space: 152905530
Effective search space used: 152905530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.0 bits)