RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780972|ref|YP_003065385.1| phosphoribosylformylglycinamidine synthase, PurS protein [Candidatus Liberibacter asiaticus str. psy62] (84 letters) >gnl|CDD|145710 pfam02700, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase. This family forms a component of the de novo purine biosynthesis pathway. Length = 80 Score = 102 bits (256), Expect = 3e-23 Identities = 36/79 (45%), Positives = 54/79 (68%) Query: 3 KANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62 KA V V LK VLDPQG+A+K AL +G+ + +R GK ++ ++ + AEE++E + Sbjct: 2 KAKVYVTLKPGVLDPQGEAIKKALHRLGYEGVEDVRIGKYIELTLEAEDEEEAEEQVEEM 61 Query: 63 CQNLLANPVIEDYDIKVQK 81 C LLANPVIEDY I++++ Sbjct: 62 CDKLLANPVIEDYRIELEE 80 >gnl|CDD|32013 COG1828, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]. Length = 83 Score = 89.1 bits (221), Expect = 2e-19 Identities = 35/81 (43%), Positives = 59/81 (72%) Query: 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60 M K V V LK VLDP+G+ ++ AL +G++ ++ +R GK+ ++E+D + AEEE++ Sbjct: 1 MYKVRVYVTLKPGVLDPEGETIEKALHRLGYNEVSDVRVGKVIELELDAESEEKAEEEVK 60 Query: 61 SICQNLLANPVIEDYDIKVQK 81 +C+ LLANPVIEDY+++V++ Sbjct: 61 EMCEKLLANPVIEDYEVEVEE 81 >gnl|CDD|35579 KOG0358, KOG0358, KOG0358, Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]. Length = 534 Score = 24.9 bits (54), Expect = 4.3 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 12/72 (16%) Query: 5 NVVVKLKK---DVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELES 61 N+ K+KK +VL Q L+ A+S++ H + +++ I DIE E++E Sbjct: 280 NMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIE---------REDIEF 330 Query: 62 ICQNLLANPVIE 73 IC+ L P+ + Sbjct: 331 ICKTLGCKPIAD 342 >gnl|CDD|37167 KOG1956, KOG1956, KOG1956, DNA topoisomerase III alpha [Replication, recombination and repair]. Length = 758 Score = 24.9 bits (54), Expect = 5.0 Identities = 11/39 (28%), Positives = 17/39 (43%) Query: 28 NIGFHNINQIRQGKIFDIEMDETLSDIAEEELESICQNL 66 NIG+ I+ R K S+I ++S +NL Sbjct: 122 NIGWEIIDVCRAVKRLLQVRRARFSEITRSAIKSAARNL 160 >gnl|CDD|34167 COG4502, COG4502, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 180 Score = 24.2 bits (52), Expect = 7.1 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Query: 41 KIFDIEMDETLSDIAEEELESICQNLLANPVIEDYDIKVQK 81 K I+MD L+D+ E ++ N+ + +++ DIK Sbjct: 4 KTIAIDMDTVLADLLREWVKRY--NIYKDKLLKMSDIKGWD 42 >gnl|CDD|147149 pfam04843, Herpes_teg_N, Herpesvirus tegument protein, N-terminal conserved region. Length = 172 Score = 24.1 bits (53), Expect = 8.1 Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%) Query: 13 DVLDPQGKALKTALSNIGFHNINQIRQG 40 VL+ +G L L G + Q Q Sbjct: 44 AVLE-EGARLDAILRTSGRLGLPQYAQL 70 >gnl|CDD|144664 pfam01153, Glypican, Glypican. Length = 559 Score = 23.9 bits (52), Expect = 9.2 Identities = 7/19 (36%), Positives = 11/19 (57%) Query: 46 EMDETLSDIAEEELESICQ 64 EM+E LS + + E + Q Sbjct: 66 EMEERLSLQSRVDFEQLLQ 84 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.313 0.132 0.349 Gapped Lambda K H 0.267 0.0773 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 935,723 Number of extensions: 40235 Number of successful extensions: 105 Number of sequences better than 10.0: 1 Number of HSP's gapped: 104 Number of HSP's successfully gapped: 25 Length of query: 84 Length of database: 6,263,737 Length adjustment: 54 Effective length of query: 30 Effective length of database: 5,096,851 Effective search space: 152905530 Effective search space used: 152905530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 50 (23.0 bits)