RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780972|ref|YP_003065385.1|
phosphoribosylformylglycinamidine synthase, PurS protein [Candidatus
Liberibacter asiaticus str. psy62]
(84 letters)
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA,
national project on protein structural and functional
analyses; 2.30A {Methanocaldococcus jannaschii}
Length = 83
Score = 104 bits (262), Expect = 5e-24
Identities = 38/81 (46%), Positives = 61/81 (75%)
Query: 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
M KA V++KLKK VL+P+G+ ++ AL+ +GF+N+ +++ K+ DI M+ + +EE+E
Sbjct: 1 MYKATVIIKLKKGVLNPEGRTIQRALNFLGFNNVKEVQTYKMIDIIMEGENEEKVKEEVE 60
Query: 61 SICQNLLANPVIEDYDIKVQK 81
+C+ LLANPVI DY+IKV+K
Sbjct: 61 EMCKKLLANPVIHDYEIKVEK 81
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS subunit; TM1244,
PURS subunit (EC 6.3.5.3), structural genomics; 1.90A
{Thermotoga maritima MSB8} SCOP: d.284.1.1 PDB: 3d54_B*
Length = 94
Score = 99.8 bits (249), Expect = 1e-22
Identities = 21/79 (26%), Positives = 45/79 (56%)
Query: 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
+ K + V+ + +V DP+G+ ++ L + ++R GK +E++ + A E ++
Sbjct: 15 LFKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGKSIHLEVEAENKEKAYEIVK 74
Query: 61 SICQNLLANPVIEDYDIKV 79
C+ LL NPV+E+Y+++
Sbjct: 75 KACEELLVNPVVEEYEVRE 93
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR,
FGAM, structural protein; 2.00A {Bacillus subtilis}
SCOP: d.284.1.1 PDB: 1twj_A
Length = 84
Score = 97.3 bits (243), Expect = 7e-22
Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
M K V V LK+ VLDPQG A++ AL ++ ++ + +R GK ++ ++++ D + ++
Sbjct: 1 MYKVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGKYMELTIEKSDRD-LDVLVK 59
Query: 61 SICQNLLANPVIEDYDIKVQK 81
+C+ LLAN VIEDY +V++
Sbjct: 60 EMCEKLLANTVIEDYRYEVEE 80
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway,
PSI, protein structure initiative, NESG; 2.56A
{Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Length = 85
Score = 93.2 bits (232), Expect = 1e-20
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 3 KANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62
V ++LKK +L+P+ ++ AL+ +G+ + + MDE + E E+E +
Sbjct: 4 MVEVRIRLKKGMLNPEAATIERALALLGY-EVEDTDTTDVITFTMDEDSLEAVEREVEDM 62
Query: 63 CQNLLANPVIEDYDIKVQKSSS 84
CQ LL NPVI DYD+ + + SS
Sbjct: 63 CQRLLCNPVIHDYDVSINEMSS 84
>2zw2_A Putative uncharacterized protein STS178; purine metabolism,
ligase; 1.55A {Sulfolobus tokodaii}
Length = 92
Score = 92.5 bits (230), Expect = 2e-20
Identities = 15/83 (18%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 1 MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
+ + +++ K+ V DP+G+ ++ + + I + R GK ++ + A E ++
Sbjct: 5 LYRVELIITNKEGVRDPEGETIQRYVVSRFSDKIIETRAGKYLVFRVNSSSQQEATELVK 64
Query: 61 SICQNL-LANPVIEDYDIKVQKS 82
+ + L NP++ +I+ +
Sbjct: 65 KLADEMRLYNPIVHKIEIRANRI 87
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Length = 84
Score = 88.1 bits (219), Expect = 4e-19
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 3 KANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62
+A ++++LKK +LDPQG+A++ L ++G + ++R GK+ +I AEE+ +++
Sbjct: 5 QATLLIELKKGILDPQGRAVEGVLKDLGH-PVEEVRVGKVLEIVFPAENLLEAEEKAKAM 63
Query: 63 CQNLLANPVIEDYDIKVQK 81
LLANPV+E Y ++ K
Sbjct: 64 GA-LLANPVMEVYALEALK 81
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto
reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A
{Bacillus subtilis} SCOP: c.1.7.1
Length = 333
Score = 30.7 bits (68), Expect = 0.083
Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 29 IGFHNINQIRQ-GKIFDIEMDETLSDIAEEELESICQNLLANPVIEDY 75
G Q+ +I L+ ++++ +I +N +++PV ++
Sbjct: 279 WGARKPGQLEALSEITGWT----LNSEDQKDINTILENTISDPVGPEF 322
>2qiz_A Ubiquitin conjugation factor E4; helical hairpin, ligase; 2.56A
{Saccharomyces cerevisiae} PDB: 2qj0_A
Length = 982
Score = 30.3 bits (68), Expect = 0.11
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 34 INQIRQGKIFDIEMDETLSDIAEEELESICQNLLANPVI 72
N+ + + D E D D+ +E L+ + ++ +PVI
Sbjct: 882 ANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVI 920
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.20A {Homo
sapiens}
Length = 170
Score = 28.6 bits (62), Expect = 0.34
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 43 FDIEMDETLSDIAEEELE-SICQNLLANPVI 72
+D+E D L E + E IC L V
Sbjct: 7 YDVEFDPPL----ESKYECPICLMALREAVQ 33
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 28.6 bits (63), Expect = 0.38
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 34 INQIRQGKIFDIEMDETLSDIAEEELESICQNLLANPVI 72
N+ + + D E D D+ +E L+ + ++ +PVI
Sbjct: 868 ANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVI 906
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR,
AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans}
Length = 348
Score = 27.7 bits (61), Expect = 0.72
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 29 IGFHNINQIRQ-GKIFDIEMDETLSDIAEEELESICQNLLANPVIEDY 75
G Q+ +F L+D ++ ++ I + NP+ +
Sbjct: 298 WGARKPGQVSGVKDVFGWS----LTDEEKKAVDDILARHVPNPIDPTF 341
>3eb5_A Baculoviral IAP repeat-containing protein 3; ring domain,
apoptosis, chromosomal rearrangement, cytoplasm,
metal-binding, polymorphism, zinc; 2.00A {Homo sapiens}
PDB: 3eb6_A
Length = 74
Score = 27.0 bits (59), Expect = 1.1
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 42 IFDIEMDETLSDIAEEELESICQNLLANPVI 72
+ D+ ++E L + EE +C + + V
Sbjct: 9 VSDLPVEEQLRRLQEERTCKVCMDKEVSIVF 39
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 2006
Score = 26.8 bits (59), Expect = 1.1
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 8/41 (19%)
Query: 20 KALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
+AL T ++N+ +N I+ KI IE+ ++LS EE+E
Sbjct: 1860 RALDT-VTNV----LNFIKLQKIDIIELQKSLS---LEEVE 1892
Score = 25.7 bits (56), Expect = 3.0
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 20/72 (27%)
Query: 4 ANVVVKLKKDV----LDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEEL 59
+ KD+ + K ++ + + G D L ++
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPV----YDT----FDGS------D--LRVLSGSIS 476
Query: 60 ESICQNLLANPV 71
E I ++ PV
Sbjct: 477 ERIVDCIIRLPV 488
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.10A {Homo
sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 26.7 bits (58), Expect = 1.4
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 43 FDIEMDETLSDIAEEELE-SICQNLLANPVI 72
+D+E D L E + E IC L V
Sbjct: 7 YDVEFDPPL----ESKYECPICLMALREAVQ 33
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
PSI, protein structure initiative, NYSG oxidoreductase;
2.20A {Escherichia coli}
Length = 483
Score = 26.7 bits (58), Expect = 1.4
Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 14 VLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDI-AEEELESICQ-NLLANPV 71
+ D +AL A+ I +++ +GK+ + TL + ++ ++ +L+
Sbjct: 33 LYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHALAAADLVIEAA 92
Query: 72 IEDYDIK 78
E ++K
Sbjct: 93 SERLEVK 99
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 26.4 bits (58), Expect = 1.7
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 46 EMDE-TLSDIAEEELESICQNLLANPVI 72
MDE ++ IAE IC L + +
Sbjct: 10 HMDEQSVESIAEVFRCFICMEKLRDARL 37
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase,
UBL conjugation pathway; NMR {Mus musculus}
Length = 85
Score = 25.6 bits (56), Expect = 3.0
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 46 EMDETLSDIAEEELESICQNLLANPVI 72
E+D SD +E + + L+ +PV
Sbjct: 5 EID--YSDAPDEFRDPLMDTLMTDPVR 29
>3l0i_A DRRA, SIDM; GEF/GDF-RAB complex, GTP-binding, guanine-nucleotide
exchange factor, GDI-displacement factor; 2.85A
{Legionella pneumophila}
Length = 363
Score = 25.1 bits (54), Expect = 3.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 7 VVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62
+++ KDV DP K I HN + KI I+ E +++ +E LES+
Sbjct: 284 IMQFIKDVADPTSK--------IWMHNTKALMNHKIAAIQKLERSNNVNDETLESV 331
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 24.6 bits (53), Expect = 5.5
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 49 ETLSDIAEEELESICQNLLANPVI 72
+ ++ + EE + IC ++L PV
Sbjct: 12 QFVNKLQEEVICPICLDILQKPVT 35
>2wwx_B DRRA, SIDM; golgi apparatus, protein transport, ER-golgi transport,
endoplasmic reticulum, prenylation, lipoprotein,
GTP-binding; 1.50A {Legionella pneumophila}
Length = 217
Score = 24.7 bits (53), Expect = 5.6
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 7 VVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62
+++ KDV DP K I HN + KI I+ E +++ +E LES+
Sbjct: 155 IMQFIKDVADPTSK--------IWMHNTKALMNHKIAAIQKLERSNNVNDETLESV 202
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 24.6 bits (53), Expect = 5.6
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 44 DIEMDETLSDIAEEELESICQNLLANPVI 72
+I +E L + EE+L IC + V
Sbjct: 12 EISTEEQLRRLQEEKLCKICMDRNIAIVF 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell
cycle regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 24.4 bits (52), Expect = 6.6
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 46 EMDETLSDIAEEELESICQNLLANPVI 72
E L + + + CQ L+ PV
Sbjct: 67 EGPNFLKKLEQSFMCVCCQELVYQPVT 93
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout
mtase, adoMet binding, transferase; HET: SAM; 2.00A
{Thermotoga maritima}
Length = 192
Score = 24.3 bits (52), Expect = 6.7
Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 14 VLDPQGKALKTALSNIGFHNINQIRQGKIFDI 45
+ G + TA++N+ H+I R + +++
Sbjct: 14 IKGKDGSIISTAVTNLDVHDI--ARTARTYNL 43
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin
ligase, E4 polyubiquitin chain elongation factor,
alternative splicing, cytoplasm; NMR {Homo sapiens}
Length = 100
Score = 24.2 bits (52), Expect = 7.9
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 46 EMDETLSDIAEEELESICQNLLANPVI 72
+ SD +E + + L+ +PV
Sbjct: 18 RAEIDYSDAPDEFRDPLMDTLMTDPVR 44
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.313 0.132 0.349
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 713,280
Number of extensions: 27712
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 36
Length of query: 84
Length of database: 5,693,230
Length adjustment: 52
Effective length of query: 32
Effective length of database: 4,432,542
Effective search space: 141841344
Effective search space used: 141841344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.6 bits)