RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780972|ref|YP_003065385.1|
phosphoribosylformylglycinamidine synthase, PurS protein [Candidatus
Liberibacter asiaticus str. psy62]
         (84 letters)



>d1vq3a_ d.284.1.1 (A:) PurS subunit of FGAM synthetase
          {Thermotoga maritima [TaxId: 2336]}
          Length = 86

 Score = 96.7 bits (241), Expect = 4e-22
 Identities = 21/79 (26%), Positives = 45/79 (56%)

Query: 1  MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
          + K  + V+ + +V DP+G+ ++  L       + ++R GK   +E++    + A E ++
Sbjct: 7  LFKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGKSIHLEVEAENKEKAYEIVK 66

Query: 61 SICQNLLANPVIEDYDIKV 79
            C+ LL NPV+E+Y+++ 
Sbjct: 67 KACEELLVNPVVEEYEVRE 85


>d1t4aa_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Bacillus
          subtilis [TaxId: 1423]}
          Length = 80

 Score = 96.6 bits (241), Expect = 5e-22
 Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 1/81 (1%)

Query: 1  MIKANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELE 60
          M K  V V LK+ VLDPQG A++ AL ++ ++ +  +R GK  ++ ++++  D  +  ++
Sbjct: 1  MYKVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGKYMELTIEKSDRD-LDVLVK 59

Query: 61 SICQNLLANPVIEDYDIKVQK 81
           +C+ LLAN VIEDY  +V++
Sbjct: 60 EMCEKLLANTVIEDYRYEVEE 80


>d1gtda_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Archaeon
          Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 82

 Score = 89.3 bits (222), Expect = 8e-20
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 3  KANVVVKLKKDVLDPQGKALKTALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESI 62
             V ++LKK +L+P+   ++ AL+ +G+  +       +    MDE   +  E E+E +
Sbjct: 3  MVEVRIRLKKGMLNPEAATIERALALLGY-EVEDTDTTDVITFTMDEDSLEAVEREVEDM 61

Query: 63 CQNLLANPVIEDYDIKVQKSS 83
          CQ LL NPVI DYD+ + + S
Sbjct: 62 CQRLLCNPVIHDYDVSINEMS 82


>d1pz1a_ c.1.7.1 (A:) Putative oxidoreductase YhdN {Bacillus
           subtilis [TaxId: 1423]}
          Length = 333

 Score = 31.2 bits (69), Expect = 0.022
 Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 29  IGFHNINQIRQ-GKIFDIEMDETLSDIAEEELESICQNLLANPVIEDY 75
            G     Q+    +I        L+   ++++ +I +N +++PV  ++
Sbjct: 279 WGARKPGQLEALSEITGWT----LNSEDQKDINTILENTISDPVGPEF 322


>d1w5ra1 d.3.1.5 (A:3-275) Arylamine N-acetyltransferase
          {Mycobacterium smegmatis [TaxId: 1772]}
          Length = 273

 Score = 23.8 bits (51), Expect = 4.1
 Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 26 LSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESIC--QNLLANPVIEDYDIKVQ 80
            +I F N++ +    + D+  +   + + +          N L   V+E+   +V+
Sbjct: 31 NRSIPFENLDPLLGIPVADLSAEALFAKLVDRRRGGYQYEHNGLLGYVLEELGFEVE 87


>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type
           calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId:
           9986]}
          Length = 219

 Score = 23.2 bits (50), Expect = 5.5
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 29  IGFHNINQIRQGKIFDIEMDETLSDIAEEELES 61
           +    + Q    + FD+ +DE   + A E L  
Sbjct: 163 VAADKLAQCPPQESFDVILDENQLEDACEHLAD 195


>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 103

 Score = 23.1 bits (49), Expect = 6.5
 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 45 IEMDETLSDIAEEELE-SICQNLLANPVI 72
          +E  + + +  ++ LE  IC  L+  PV 
Sbjct: 8  VEEVQNVINAMQKILECPICLELIKEPVS 36


>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
           E2 domain {Toxoplasma gondii [TaxId: 5811]}
          Length = 161

 Score = 23.2 bits (49), Expect = 6.7
 Identities = 12/51 (23%), Positives = 18/51 (35%)

Query: 24  TALSNIGFHNINQIRQGKIFDIEMDETLSDIAEEELESICQNLLANPVIED 74
             ++ I   NI+        DI   E    +         Q +LA+PV  D
Sbjct: 81  KFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTD 131


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.132    0.349 

Gapped
Lambda     K      H
   0.267   0.0486    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 309,396
Number of extensions: 12105
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 11
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.5 bits)