Query gi|254780973|ref|YP_003065386.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 255 No_of_seqs 142 out of 1715 Neff 6.1 Searched_HMMs 39220 Date Mon May 30 02:18:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780973.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK09362 phosphoribosylaminoim 100.0 0 0 606.1 25.7 236 1-239 1-236 (238) 2 cd01415 SAICAR_synt_PurC bacte 100.0 0 0 597.2 24.1 229 6-237 1-229 (230) 3 cd01416 SAICAR_synt_Ade5 Ade5_ 100.0 0 0 564.2 24.5 235 1-237 1-251 (252) 4 cd00476 SAICAR_synt 5-aminoimi 100.0 0 0 563.0 22.6 228 6-237 1-230 (230) 5 COG0152 PurC Phosphoribosylami 100.0 0 0 562.7 20.6 240 1-243 1-241 (247) 6 pfam01259 SAICAR_synt SAICAR s 100.0 0 0 553.2 19.2 232 3-237 1-240 (243) 7 TIGR00081 purC phosphoribosyla 100.0 0 0 542.8 19.5 236 3-241 25-373 (374) 8 PRK12607 phosphoribosylaminoim 100.0 0 0 526.9 21.1 229 2-236 10-287 (295) 9 cd01414 SAICAR_synt_Sc non-met 100.0 0 0 522.8 22.2 211 6-223 1-244 (279) 10 PRK13961 phosphoribosylaminoim 100.0 0 0 509.9 21.5 228 3-237 12-292 (297) 11 PRK13959 phosphoribosylaminoim 100.0 0 0 455.3 22.9 209 9-223 1-267 (335) 12 PRK13960 phosphoribosylaminoim 100.0 0 0 428.9 20.3 247 4-250 19-354 (367) 13 TIGR02735 purC_vibrio phosphor 100.0 0 0 321.4 11.9 235 3-237 17-340 (365) 14 KOG2835 consensus 100.0 1.4E-32 3.5E-37 224.9 2.5 230 4-235 12-254 (373) 15 KOG2835 consensus 99.4 7.6E-14 1.9E-18 107.2 2.0 163 57-222 87-290 (373) 16 PRK13961 phosphoribosylaminoim 88.2 0.39 9.9E-06 27.3 2.5 129 110-253 129-278 (297) 17 PRK12607 phosphoribosylaminoim 85.0 0.25 6.5E-06 28.5 0.2 125 87-220 80-234 (295) 18 TIGR00421 ubiX_pad polyprenyl 49.7 7.9 0.0002 19.1 1.2 85 47-131 8-160 (181) 19 TIGR01553 formate-DH-alph form 36.8 17 0.00043 17.0 1.2 41 90-130 851-894 (1043) 20 KOG2646 consensus 34.7 35 0.00088 15.1 3.7 69 107-184 276-347 (396) 21 pfam10866 DUF2704 Protein of u 33.7 14 0.00036 17.5 0.4 66 103-173 21-86 (169) 22 COG3473 Maleate cis-trans isom 31.9 12 0.00032 17.9 -0.1 115 85-209 64-188 (238) 23 pfam01238 PMI_typeI Phosphoman 27.3 14 0.00037 17.5 -0.4 11 198-208 255-265 (373) 24 TIGR02315 ABC_phnC phosphonate 25.1 31 0.00079 15.4 0.9 22 79-100 93-114 (253) 25 cd05145 RIO1_like RIO kinase f 24.8 37 0.00094 14.9 1.3 66 154-229 122-187 (190) 26 PHA00012 assembly protein 24.4 42 0.0011 14.5 1.5 16 56-71 109-124 (361) 27 TIGR02088 LEU3_arch isopropylm 23.6 24 0.0006 16.1 0.1 20 43-64 156-175 (350) 28 TIGR00395 leuS_arch leucyl-tRN 22.7 56 0.0014 13.7 3.5 158 15-181 310-530 (1109) 29 pfam10902 DUF2693 Protein of u 21.6 42 0.0011 14.5 1.1 13 198-210 47-59 (83) 30 cd03408 Band_7_5 A subgroup of 21.0 61 0.0015 13.5 5.5 40 140-179 152-191 (207) 31 COG2000 Predicted Fe-S protein 20.2 63 0.0016 13.4 3.3 38 198-236 92-135 (226) No 1 >PRK09362 phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed Probab=100.00 E-value=0 Score=606.09 Aligned_cols=236 Identities=48% Similarity=0.834 Sum_probs=231.7 Q ss_pred CCCCCEEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEE Q ss_conf 99877636133037687288997999993682451620145568887999999999999987339974057438840023 Q gi|254780973|r 1 MRPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQL 80 (255) Q Consensus 1 m~~~~~lyeGKvK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~~~~~i 80 (255) |+++++||+||||+||+++|++.|+++||||+||||+++++.|||||++||+||+|||++|+++||||||++.+++|+|+ T Consensus 1 m~~~~lly~GKvk~vY~~~d~~~li~~~~DriSAfD~~~~~~IpgKG~~l~~iS~~~F~~l~~~GI~tH~i~~~~~~~m~ 80 (238) T PRK09362 1 MEKKELLYEGKAKIVYSTDDPDLLILEFKDDATAFNGEKKEQIDGKGVLNNQISAFIFKKLEEAGIPTHFIEKLSDREQL 80 (238) T ss_pred CCCCCEEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEE T ss_conf 98676366416747888599999999996882520755578899766999999999999874679980554147983599 Q ss_pred EECCCCCCEEEEEECEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 10026553599992446010100256433773786434443454456886415578888540898999789999999999 Q gi|254780973|r 81 VRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRIND 160 (255) Q Consensus 81 v~k~~~iPiE~VvR~yaaGS~~kry~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~ 160 (255) |+||+|||+|||||||||||+|+|||+++|++|++|++||++|+|++|||++|++++.++|+++++++++|+++|+++|+ T Consensus 81 vkk~~~iPiE~VvR~y~~GS~~~r~g~~eg~~l~~Pi~e~~~K~d~~~Dp~i~~~~~~~~~~~~~~~~~~i~~~al~i~~ 160 (238) T PRK09362 81 VKKVEIIPLEVVVRNVAAGSLVKRLGIEEGTVLPPPIVEFYYKNDALGDPMINEDHILALGWATPEELAEIKELALKIND 160 (238) T ss_pred EEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCEEECEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 99702450899995257504401258644767898712023356667899759999998502899999999999999999 Q ss_pred HHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCC Q ss_conf 9999999879766312066631046888879999630587414117675670447876123677999999999971423 Q gi|254780973|r 161 FMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYSEVARRLGIF 239 (255) Q Consensus 161 ~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEItPDs~R~Wd~~~~e~lDKd~~R~~l~~v~~~Y~ev~~rl~~~ 239 (255) +++++|.++|++|||||||||++.+| +|+|+||||||||||||++++++||||+||+++|+++++|+||++||+.. T Consensus 161 ~~~~~~~~~GliLvD~K~EFG~~~~g---~i~L~DEiTPDs~R~W~~~~~~~lDK~~~R~~l~~~~~~Y~~v~~r~~~~ 236 (238) T PRK09362 161 VLKGLFAGIGIRLVDFKLEFGRDFDG---EIVLADEISPDTCRLWDKETNEKLDKDRFRRDLGGVIEAYEEVLKRLGEL 236 (238) T ss_pred HHHHHHHHCCCEEEEEEEEEEECCCC---CEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCC T ss_conf 99999997898899987998785999---89999855798530351888762466988603453889999999987343 No 2 >cd01415 SAICAR_synt_PurC bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. A subfamily of SAICAR synthetases represented by the Thermotoga maritima (Tm) enzyme and E. coli PurC. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate. Probab=100.00 E-value=0 Score=597.25 Aligned_cols=229 Identities=47% Similarity=0.752 Sum_probs=225.2 Q ss_pred EEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCC Q ss_conf 63613303768728899799999368245162014556888799999999999998733997405743884002310026 Q gi|254780973|r 6 PVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQLVRDVE 85 (255) Q Consensus 6 ~lyeGKvK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~~~~~iv~k~~ 85 (255) +||+||||+||+++|++.|+|+||||+||||+++++.|||||++||+||+|||++|+++||||||++.+++|+|+|+||+ T Consensus 1 Liy~GKvk~iY~~~d~~~li~~~tDriSAfD~~~~~~Ip~KG~il~~iS~~~F~~l~~~gI~tH~i~~~~~~~~~vkk~~ 80 (230) T cd01415 1 LLYEGKAKIVYATDDPDVLIVEFKDDATAFNGKKKDTIEGKGVLNNEISALIFKYLEENGIKTHFIEKLSDREQLVKKVE 80 (230) T ss_pred CCCCCCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEEE T ss_conf 96564542789859999999999688152076557889977699999999999988767998202315898559998701 Q ss_pred CCCEEEEEECEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 55359999244601010025643377378643444345445688641557888854089899978999999999999999 Q gi|254780973|r 86 MIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGL 165 (255) Q Consensus 86 ~iPiE~VvR~yaaGS~~kry~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~~l~~~ 165 (255) |||+|||||||||||+|+|||+++|++|++|++||++|+|++|||++|++++.++|+++++++++|+++|+++|++++++ T Consensus 81 ~iPiE~VvR~y~tGS~~kryg~~eg~~l~~Pi~e~~~K~d~~~Dp~i~~~~~~~~~~~~~~~~~~i~~~al~i~~~~~~~ 160 (230) T cd01415 81 IIPLEVVVRNIAAGSLVKRLGIEEGTVLDPPIVEFYYKNDELGDPLINEDHILALGLATEEELKEIKELALKINEVLSEF 160 (230) T ss_pred EEEEEEEEEEEEEEEEEEECCCCCCCCCCCCEECCEECCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 45089999767511225324866667999861012321666789865999999850289999999999999999999999 Q ss_pred HHHCCCEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHHC Q ss_conf 998797663120666310468888799996305874141176756704478761236779999999999714 Q gi|254780973|r 166 FLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYSEVARRLG 237 (255) Q Consensus 166 ~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEItPDs~R~Wd~~~~e~lDKd~~R~~l~~v~~~Y~ev~~rl~ 237 (255) |.++|++|||||||||++.+ |+|+|+||||||||||||++++++||||+||+++|+++++|+||++||+ T Consensus 161 ~~~~GliLvD~K~EFG~~~~---g~i~L~DEitPDssR~W~~~~~~~~DKq~~R~~~~~~~~~Y~~v~~r~~ 229 (230) T cd01415 161 FAEIGIILVDFKLEFGRDKD---GEIVLADEISPDTCRLWDKETGEKLDKDRFRRDLGDVIEAYEEVLKRLG 229 (230) T ss_pred HHHCCCEEEEEEEEEEECCC---CCEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHC T ss_conf 99789889998799878699---9599998567974203508987534729886355637799999999745 No 3 >cd01416 SAICAR_synt_Ade5 Ade5_like 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic group of SAICAR synthetases represented by the Drosophila melanogaster, N-terminal, SAICAR synthetase domain of bifunctional Ade5. The Ade5 gene product (CAIR-SAICARs) catalyzes the sixth and seventh steps of the de novo biosynthesis of purine nucleotides (also reported as seventh and eighth steps). SAICAR synthetase converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate. Probab=100.00 E-value=0 Score=564.22 Aligned_cols=235 Identities=29% Similarity=0.419 Sum_probs=223.1 Q ss_pred CCCCCEEEECCCEEEEECC-CCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEE Q ss_conf 9987763613303768728-899799999368245162014556888799999999999998733997405743884002 Q gi|254780973|r 1 MRPRNPVYEEKTKIIYEGL-EPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQ 79 (255) Q Consensus 1 m~~~~~lyeGKvK~iY~~~-d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~~~~~ 79 (255) |++.++||+||||+||+++ +++.++++||||+||||+++++.|||||++||+||+|||++|+++||||||++.+++++| T Consensus 1 m~~~k~ly~GKvk~vY~~~d~~~~lli~~tDriSAfD~~~~~~IpgKG~~l~~iS~~~F~~l~~~gI~tH~i~~~~~~~~ 80 (252) T cd01416 1 LKLGKKLIEGKTKIVYELPDQPGLVLIQSKDRITAGDGARKDEIEGKAAISNKTTSNVFELLQEAGIKTHFVKQCSPTAF 80 (252) T ss_pred CCCCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCEE T ss_conf 98888433145758864589998899999789723276057888978699999999999886207998012168998047 Q ss_pred EEECCCCCCEEEEEECEEECCHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH------CCHHHHHHHH Q ss_conf 31002655359999244601010025-6433773786434443454456886415578888540------8989997899 Q gi|254780973|r 80 LVRDVEMIPLLITVRNTAAGSLAKRL-NIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNW------ANQSEVEEMT 152 (255) Q Consensus 80 iv~k~~~iPiE~VvR~yaaGS~~kry-~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~------~~~~~~~~i~ 152 (255) +|+||+|||+|||||||||||+|+|| |+.+|++|++|++|+++|+|++|||++|++++.++|+ +|++++++|+ T Consensus 81 lvkk~~~iPiE~VVR~ya~GS~~kr~~g~~eg~~l~~pl~e~~~K~d~~~Dp~it~~~i~~~~~~~~~~~~~~~~~~~i~ 160 (252) T cd01416 81 IARKCEMIPIEWVCRRIATGSFLKRNPGVKEGYRFSPPKLEFFYKDDANHDPQWSEEQLLEAKLNCGGLKIGKKEVDIMT 160 (252) T ss_pred EEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHH T ss_conf 77614630579999620344412136898774628976344424665678998899999867853013448999999999 Q ss_pred HHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEECCCC-CCCCHHHHHCC-------HHH Q ss_conf 9999999999999998797663120666310468888799996305874141176756-70447876123-------677 Q gi|254780973|r 153 ALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDLSKK-EECDKKRFSKS-------NDQ 224 (255) Q Consensus 153 ~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEItPDs~R~Wd~~~~-e~lDKd~~R~~-------l~~ 224 (255) ++|+++|++++++|.++|++|||||||||++.++ |+|+|+||||||||||||.++. ++||||+||++ +++ T Consensus 161 ~~al~i~~~l~~~~~~~GiiLvDtK~EFG~d~~~--g~ivl~D~itPDSsR~W~~~~~~~~~DK~~~Rd~~~~~~~~~~~ 238 (252) T cd01416 161 KSTIAIFEILEKAWATQDCTLVDMKIEFGVDVTT--GEILLADVIDNDSWRLWPSGDKRLMKDKQVYRNLKEVTDEALQE 238 (252) T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCC--CEEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHH T ss_conf 9999999999999997898899617886464789--97999980079864416489977164444100676442999999 Q ss_pred HHHHHHHHHHHHC Q ss_conf 9999999999714 Q gi|254780973|r 225 LLEGYSEVARRLG 237 (255) Q Consensus 225 v~~~Y~ev~~rl~ 237 (255) |.++|+||++||+ T Consensus 239 v~~~~~~v~~rl~ 251 (252) T cd01416 239 VKKNYEWVADKLE 251 (252) T ss_pred HHHHHHHHHHHHC T ss_conf 9999999999866 No 4 >cd00476 SAICAR_synt 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. SAICAR synthetase (the PurC gene product) catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate. Probab=100.00 E-value=0 Score=563.03 Aligned_cols=228 Identities=36% Similarity=0.588 Sum_probs=220.4 Q ss_pred EEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCC Q ss_conf 63613303768728899799999368245162014556888799999999999998733997405743884002310026 Q gi|254780973|r 6 PVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQLVRDVE 85 (255) Q Consensus 6 ~lyeGKvK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~~~~~iv~k~~ 85 (255) .||+||||+||++++ +.++++||||+||||+++++.|||||++||+||+|||++|+++||||||++.++|++|+|++|+ T Consensus 1 ~lY~GK~K~vy~~~~-~~ll~~~~DriSafD~~~~~~i~gKG~~~~~iS~~~F~~l~~~GI~tH~i~~~~~~~~~vkk~~ 79 (230) T cd00476 1 TLYRGKTKIVYETKD-GVLLLEFKDDISAGDGARRNFLDEKGDITAKLTLFIFKYLSEAGIPTHFVERLGPRTLLVDKLK 79 (230) T ss_pred CCCCCCCEEEEECCC-CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEECC T ss_conf 953023527897699-9899999798514276367889987899999999999986216997356436999479999887 Q ss_pred CCCEEEEEECEEECCHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 55359999244601010025-64337737864344434544568864155788885408989997899999999999999 Q gi|254780973|r 86 MIPLLITVRNTAAGSLAKRL-NIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTG 164 (255) Q Consensus 86 ~iPiE~VvR~yaaGS~~kry-~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~~l~~ 164 (255) |||+|||||||||||+|+|| |+++|++|++|++||++|+|++|||++|++++.++|+++++++++|+++|+++|+++++ T Consensus 80 ~iplEvVvR~ya~GS~~rry~g~~eg~~l~~Pi~e~~~K~d~~~Dp~i~~~~~~~~~~~~~~e~~~i~~~al~v~~~l~~ 159 (230) T cd00476 80 XIPLEVVVRNRATGSFVKRYGGFKEGREFPPPLVEFFYKDDAEHDPIVSEDQLERLGFIGKVDVERXKELAVKINTVLKK 159 (230) T ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 64579999711202057661787577618986678773378789998899999985689999999999999999999999 Q ss_pred HHHHCCCEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEECCCCCCC-CHHHHHCCHHHHHHHHHHHHHHHC Q ss_conf 9998797663120666310468888799996305874141176756704-478761236779999999999714 Q gi|254780973|r 165 LFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDLSKKEEC-DKKRFSKSNDQLLEGYSEVARRLG 237 (255) Q Consensus 165 ~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEItPDs~R~Wd~~~~e~l-DKd~~R~~l~~v~~~Y~ev~~rl~ 237 (255) +|.++|++|||||||||++.+ |+|+|+||||||||||||+++++.. ||++||++||+++++|+||++||. T Consensus 160 ~~~~~Gl~LVD~K~EFG~~~~---G~ivL~DEisPDs~R~Wd~~~~~~~kd~~r~~~~l~~~~~~Y~ev~~rl~ 230 (230) T cd00476 160 LFSPAGLELWDFKLEFGLDEE---GEIVLGDEISPDSSRLWRKGGEPYDKDLFRRRASLGQIIEKYEEVAELVR 230 (230) T ss_pred HHHHCCCEEEEEEEEEEECCC---CCEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHC T ss_conf 999789989998899878799---98999997089864332289860001034302651769999999999759 No 5 >COG0152 PurC Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase [Nucleotide transport and metabolism] Probab=100.00 E-value=0 Score=562.72 Aligned_cols=240 Identities=43% Similarity=0.636 Sum_probs=232.1 Q ss_pred CCCCCEEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEE Q ss_conf 99877636133037687288997999993682451620145568887999999999999987339974057438840023 Q gi|254780973|r 1 MRPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQL 80 (255) Q Consensus 1 m~~~~~lyeGKvK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~~~~~i 80 (255) |.+..+||+||||++|+++|++.|+|+||||+||||++++++|||||++||+||+|||++|+++||||||++.+++++|+ T Consensus 1 ~~~~~~ly~GKaK~vY~~~d~~~li~~f~D~~sAfdg~~~~~i~gKG~~n~~iS~~~F~~L~~~gi~tH~i~~~~~~~~l 80 (247) T COG0152 1 MEKLRLLYEGKAKDLYETDDPDLLIMEFSDRASAFDGEKKDQIPGKGALNNQISAFIFEKLEEAGIPTHFIELLSDREQL 80 (247) T ss_pred CCCCCCCCCCCCCEEEECCCCCEEEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEE T ss_conf 97643110443312367599888999995463202532156678706999999999999998749973053116997488 Q ss_pred EECCCCCCEEEEEECEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 10026553599992446010100256433773786434443454456886415578888540898999789999999999 Q gi|254780973|r 81 VRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRIND 160 (255) Q Consensus 81 v~k~~~iPiE~VvR~yaaGS~~kry~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~ 160 (255) |++++|||+|||||||+|||+||||+.++|+.|+.||+||++|+|+++||++|.+++..+++++.+++++|+++|+++|+ T Consensus 81 vkk~~iiPlEvVvRn~~aGS~~kr~~~~eg~~~~~~l~e~~~k~d~l~dPiv~d~~i~~~~~~~~ee~~~i~~~alkin~ 160 (247) T COG0152 81 VKKLEIIPLEVVVRNYAAGSLLKRYGIEEGTVLGIPLVEFLYKNDELPDPIVTDEHISALGIATPEEIEEIKELALKINE 160 (247) T ss_pred EEEEEEEEEEEEEECEECCHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHCCHHCCCCHHHHHHHHHHHHHHHH T ss_conf 88624875899995300224677616666618898874100151004997204513452034899999999999999999 Q ss_pred HHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEECCCCCC-CCHHHHHCCHHHHHHHHHHHHHHHCCC Q ss_conf 9999999879766312066631046888879999630587414117675670-447876123677999999999971423 Q gi|254780973|r 161 FMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDLSKKEE-CDKKRFSKSNDQLLEGYSEVARRLGIF 239 (255) Q Consensus 161 ~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEItPDs~R~Wd~~~~e~-lDKd~~R~~l~~v~~~Y~ev~~rl~~~ 239 (255) +++++|.++|++|||||||||++.+ |+|+|+||||||||||||++++++ ||||+||+++|++.+.|+||++|+... T Consensus 161 ~l~~~~~~~GiilvD~KlEFG~d~~---g~iiLaDEisPDs~R~Wd~~t~~~~~DKd~~R~~~g~~~~~y~ev~~r~~~~ 237 (247) T COG0152 161 VLKDLFAKRGIILVDFKLEFGLDED---GEIVLADEISPDSCRLWDAETYEKSLDKDFFRRDLGDLPELYEEVLERLSDL 237 (247) T ss_pred HHHHHHHHCCCEEEEEEEEEEECCC---CCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHH T ss_conf 9999998589679766688667599---9889984337975446646546431246787513798540499999999999 Q ss_pred CCCC Q ss_conf 2368 Q gi|254780973|r 240 KKNE 243 (255) Q Consensus 240 ~~~~ 243 (255) .... T Consensus 238 ~~~~ 241 (247) T COG0152 238 YEEA 241 (247) T ss_pred HHHH T ss_conf 9988 No 6 >pfam01259 SAICAR_synt SAICAR synthetase. Also known as Phosphoribosylaminoimidazole-succinocarboxamide synthase. Probab=100.00 E-value=0 Score=553.18 Aligned_cols=232 Identities=32% Similarity=0.451 Sum_probs=222.7 Q ss_pred CCCEEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEE Q ss_conf 87763613303768728899799999368245162014556888799999999999998733997405743884002310 Q gi|254780973|r 3 PRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQLVR 82 (255) Q Consensus 3 ~~~~lyeGKvK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~~~~~iv~ 82 (255) |+++||+||||+||+++|++.|+|+||||+||||+++++.|||||++||+||+|||++|+++||||||++.+++++|+|+ T Consensus 1 kl~lly~GKvK~vy~~~d~~~ll~~f~DriSafD~~~~~~IpgKG~~l~~iS~~~F~~l~~~GI~tH~i~~~~~~~~~vk 80 (243) T pfam01259 1 KLPLLARGKVKDIYETDDENTLLMVAKDRISAFDGIRKNQIPGKGRILNKTSSFWFEFLQEAGIPNHFVESLSETELLVK 80 (243) T ss_pred CCCCEECCCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEE T ss_conf 98312213674889859999999999798672186057899977799999999999988665983655068999618887 Q ss_pred CCCCCCEEEEEECEEECCHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH------CCHHHHHHHHHHH Q ss_conf 02655359999244601010025-6433773786434443454456886415578888540------8989997899999 Q gi|254780973|r 83 DVEMIPLLITVRNTAAGSLAKRL-NIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNW------ANQSEVEEMTALS 155 (255) Q Consensus 83 k~~~iPiE~VvR~yaaGS~~kry-~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~------~~~~~~~~i~~~a 155 (255) ||+|||||||||||||||+|+|| +..+|..|++|++|+++|+|+++||+++.+|...+++ ++.+++++|+++| T Consensus 81 k~~~iPlEvIvR~y~~GS~~~ry~g~~~G~~l~~~l~e~~~k~d~~~dP~~k~e~d~~l~~~~~~~~~~~ee~~~i~~~a 160 (243) T pfam01259 81 KLKMIPIEVVVRGYATGSFLKRYTGVVEGIKLPPGLVESFYKPDAIFDPSTKAEHDENISFAQAELLVGKEEADRMKEKT 160 (243) T ss_pred EECCCCEEEEEEEEEECHHEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHCCHHHHHHHHHHH T ss_conf 40256569999868712110231797368748954466542652236884689999858985754215999999999999 Q ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEECCCCC-CCCHHHHHCCHHHHHHHHHHHHH Q ss_conf 99999999999987976631206663104688887999963058741411767567-04478761236779999999999 Q gi|254780973|r 156 IRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDLSKKE-ECDKKRFSKSNDQLLEGYSEVAR 234 (255) Q Consensus 156 ~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEItPDs~R~Wd~~~~e-~lDKd~~R~~l~~v~~~Y~ev~~ 234 (255) +++|++++++|.++|++|||||+|||++.+ |+|+||||||||||||||+++++ +||||+||+||+++.++|++++. T Consensus 161 l~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~---g~ivL~DEI~PDs~R~Wd~~~~~~~lDK~~~R~~l~~~~~~y~~v~~ 237 (243) T pfam01259 161 LALYEKLKKYAADKGIILVDTKFEFGLDKD---GEILLADEISPDSSRLWDADTYEKQYDKQFLRDWLGSNGEAYEEVGP 237 (243) T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEEECCC---CCEEEEEEECCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCC T ss_conf 999999999999789889997789867699---95999986679744331688886046829887240046606674665 Q ss_pred HHC Q ss_conf 714 Q gi|254780973|r 235 RLG 237 (255) Q Consensus 235 rl~ 237 (255) ||. T Consensus 238 ~l~ 240 (243) T pfam01259 238 KLP 240 (243) T ss_pred CCC T ss_conf 587 No 7 >TIGR00081 purC phosphoribosylaminoimidazole-succinocarboxamide synthase; InterPro: IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase (6.3.2.6 from EC) (SAICAR synthetase) catalyzes the seventh step in the de novo purine biosynthetic pathway; the ATP-dependent conversion of 5'-phosphoribosyl-5-aminoimidazole-4-carboxylic acid and aspartic acid to SAICAR . In bacteria (purC), fungi (ADE1) and plants (Pur7), SAICAR synthetase is a monofunctional protein; in animals it is the N-terminal domain of a bifunctional enzyme that also catalyse phosphoribosylaminoimidazole carboxylase (AIRC) activity (see). ; GO: 0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity, 0006164 purine nucleotide biosynthetic process. Probab=100.00 E-value=0 Score=542.80 Aligned_cols=236 Identities=38% Similarity=0.655 Sum_probs=227.3 Q ss_pred CCCEEEECCCEEEE----ECCCCCEEEEEEECCCEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHH--------------- Q ss_conf 87763613303768----72889979999936824516-20145568887999999999999987--------------- Q gi|254780973|r 3 PRNPVYEEKTKIIY----EGLEPGTLIQFFKDDNLLEN-NPRCATLNGKGVLNNRISEYMFTQLG--------------- 62 (255) Q Consensus 3 ~~~~lyeGKvK~iY----~~~d~~~li~~~~DriSAfD-~~~~~~I~gKG~~l~~iS~~~F~~l~--------------- 62 (255) |.++||+||||+|| .++||+.|.++|+||+|||| |++++.|++||.+||.||++||++|+ T Consensus 25 k~~~lY~GKaK~~YvLke~~dd~~~L~~~f~D~~sAfdYg~~~d~i~~KG~~n~~iS~~~F~~L~~~~~NHl~diaPG~~ 104 (374) T TIGR00081 25 KKKLLYSGKAKDLYVLKEETDDPDLLVFVFRDDISAFDYGEKKDQIEGKGRLNTKISAFIFEKLENIVRNHLVDIAPGDS 104 (374) T ss_pred CCCCCEECCCEEEEEEECCCCCCCEEEEEEEECCCEECCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCE T ss_conf 46651003411798850511379778999830531212131368620346899999999999876521444244078872 Q ss_pred ------HCCCCCEEEECCCCCEEEEECCC----------------------------------CCCEEEEEECEEEC--C Q ss_conf ------33997405743884002310026----------------------------------55359999244601--0 Q gi|254780973|r 63 ------KIGIPHYFIRRINMREQLVRDVE----------------------------------MIPLLITVRNTAAG--S 100 (255) Q Consensus 63 ------~~Gi~th~i~~~~~~~~iv~k~~----------------------------------~iPiE~VvR~yaaG--S 100 (255) ++||||||++.+.++.|+|||++ |||||||||||||| | T Consensus 105 ~yD~lPe~Gi~t~y~~~~~~~~~Lvkk~~evenavnemevkLvRvikPknGDYsiFktLkGnF~iPlEvivRN~~aGGsS 184 (374) T TIGR00081 105 VYDVLPEAGIPTHYIELIEDREMLVKKLDEVENAVNEMEVKLVRVIKPKNGDYSIFKTLKGNFLIPLEVIVRNIAAGGSS 184 (374) T ss_pred EECCHHHCCCCHHHHHCCCCCEEEEEECHHHHHHHHHEEEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCC T ss_conf 00000101786267523689708998200244224100257899973678871111001577310389996362368842 Q ss_pred HHCC------------CCCCCCC-CCCCCCCCCCCCC---CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1002------------5643377-3786434443454---4568864155788885408989997899999999999999 Q gi|254780973|r 101 LAKR------------LNIPEGL-SLPRSLVEFYYLP---DSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTG 164 (255) Q Consensus 101 ~~kr------------y~~~~G~-~l~~pl~e~~~K~---d~~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~~l~~ 164 (255) +||| ++++||. .|++||+||++|+ |+.|||++|.+++.+++++|+++++.|+++|++||+.+++ T Consensus 185 ~~kry~~tgt~~gDFGl~~~EG~~EL~~pl~e~~~K~S~Kde~GDp~ln~s~a~~~~~~~~e~~~~~Kela~~~n~~l~~ 264 (374) T TIGR00081 185 LLKRYERTGTVPGDFGLGLPEGLVELEQPLVEFIFKDSSKDEVGDPMLNESYAEALGLATEEELERIKELALKVNEVLKR 264 (374) T ss_pred EEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 00331037831166788833241232776654323888778848898887799882367888999999999999899999 Q ss_pred HHHHCCCEEECCCEEEEECCCCCCCEEE-EEEEE-CCCCCEEEECCCCC------------------------------- Q ss_conf 9998797663120666310468888799-99630-58741411767567------------------------------- Q gi|254780973|r 165 LFLGINIQLVDFRIKCGRLLDDDILRIV-LADEI-FPDCCRLWDLSKKE------------------------------- 211 (255) Q Consensus 165 ~~~~~Gl~LvD~K~EFG~~~~~~~g~ii-L~DEI-tPDs~R~Wd~~~~e------------------------------- 211 (255) +|.++||||+|||||||+|.+ |+++ |+||| |||||||||.++++ T Consensus 265 ~~~~~GiIl~DfKlEfG~D~~---G~~~iL~DEvlsPD~cRlWd~~t~~~~~~~~sydkqfeWYDkvRdwl~~~gw~~v~ 341 (374) T TIGR00081 265 LFDEKGIILVDFKLEFGLDEE---GNLIILADEVLSPDTCRLWDKETYESGELLRSYDKQFEWYDKVRDWLEQEGWEAVG 341 (374) T ss_pred HHHHCCCEECCCCEEEEECCC---CEEEEEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 997189571054246620378---52899974434888521361234321157611222212678888775305523486 Q ss_pred --CCCHHHHHCCHHHHHHHHHHHHHHHCCCCC Q ss_conf --044787612367799999999997142323 Q gi|254780973|r 212 --ECDKKRFSKSNDQLLEGYSEVARRLGIFKK 241 (255) Q Consensus 212 --~lDKd~~R~~l~~v~~~Y~ev~~rl~~~~~ 241 (255) ++|||+||++++++++||+.|++|++...+ T Consensus 342 ~pkldkD~frr~~~~~~~AY~~v~~r~~~~~~ 373 (374) T TIGR00081 342 LPKLDKDIFRRTLGKLIEAYETVAKRLGSQDD 373 (374) T ss_pred CCCCCCCCEECCHHHHHHHHHHHHHHHHHHCC T ss_conf 46667021674777899999999853322105 No 8 >PRK12607 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Probab=100.00 E-value=0 Score=526.87 Aligned_cols=229 Identities=21% Similarity=0.224 Sum_probs=210.8 Q ss_pred CCCCEEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEE Q ss_conf 98776361330376872889979999936824516201455688879999999999999873399740574388400231 Q gi|254780973|r 2 RPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQLV 81 (255) Q Consensus 2 ~~~~~lyeGKvK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~~~~~iv 81 (255) ...+++|+||||+||+++| +.++|+||||+||||++++ +|||||++||+||+|||++|+++ |||||++.++++.|+| T Consensus 10 ~~l~~iy~GKvrdvY~~~d-~~ll~v~tDriSAFD~v~~-~IpgKG~vl~~iS~~wF~~l~~~-i~nH~i~~~~~~~~lv 86 (295) T PRK12607 10 PELPNYYRGKVRDNYDLPD-GRRILITTDRISAFDVVLA-TIPFKGQVLTQTARYWFEATKDI-CPNHVISYPDPNVVLG 86 (295) T ss_pred CCCCCCCCCCCCEEEECCC-CEEEEEEECCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCHHHEE T ss_conf 9985002666835787499-9399999588546542268-99976799999999999972074-8704751577312201 Q ss_pred ECCCCCCEEEEEECEEECCHHCCC------------------CCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHH Q ss_conf 002655359999244601010025------------------643377378643444345445-6886415578888540 Q gi|254780973|r 82 RDVEMIPLLITVRNTAAGSLAKRL------------------NIPEGLSLPRSLVEFYYLPDS-SEKTLVSEEHITAFNW 142 (255) Q Consensus 82 ~k~~~iPiE~VvR~yaaGS~~kry------------------~~~~G~~l~~pl~e~~~K~d~-~~DP~i~~~~~~~~~~ 142 (255) +||+|||||||||||+|||+|++| |+.+|++|++|++++++|++. .|||.|+.+++.+.++ T Consensus 87 kk~~~iPiE~VvRgy~aGS~~k~y~~~y~~g~~~~~g~~lp~gl~~~~~Lp~PiftpstK~d~~~hD~~Is~~~i~~~~l 166 (295) T PRK12607 87 RRLTVLPVECVVRGYLAGSTWTSILTLYKAGERTMYGERLPDGLRENQKLPPPIFTPTTKAFEGGHDEPLTIAEIVARGL 166 (295) T ss_pred EECEEEEEEEEECCCEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCC T ss_conf 00216645777527100211688887750477531265566544467668887455663033347887777789998658 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEEE-CCCCCEEEECCCC----------C Q ss_conf 8989997899999999999999999879766312066631046888879999630-5874141176756----------7 Q gi|254780973|r 143 ANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEI-FPDCCRLWDLSKK----------E 211 (255) Q Consensus 143 ~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEI-tPDs~R~Wd~~~~----------e 211 (255) ++++++++|+++|+++|++++++|.++|++|||||||||++.+ |+|+||||| |||||||||+++| + T Consensus 167 ~~~e~~~~i~~~sl~i~~~~~~~~~~~GiiLvDtK~EFG~d~~---G~iiL~DEi~TPDSsR~W~~~~Y~~~~~~g~~~~ 243 (295) T PRK12607 167 LTDEQWYTLESMALALFTRGEEIAAEQGLILADTKYEFGRDAD---GRIILADEIHTPDSSRYWAADSYPARFAPGRRPP 243 (295) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC---CCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCC T ss_conf 9889999999999999999999999789789985233126699---9889976404885012442434345431699976 Q ss_pred CCCHHHHHCCHH-------------------HHHHHHHHHHHHH Q ss_conf 044787612367-------------------7999999999971 Q gi|254780973|r 212 ECDKKRFSKSND-------------------QLLEGYSEVARRL 236 (255) Q Consensus 212 ~lDKd~~R~~l~-------------------~v~~~Y~ev~~rl 236 (255) +||||++|+||. .+.++|.++++|| T Consensus 244 s~dKq~vR~~l~~~~~~~~~~~P~lp~~iv~~t~~rY~~~ye~l 287 (295) T PRK12607 244 SFDKDFLRDWVDARCDPYNDEIPEIPAEVVEATSARYIDAYERI 287 (295) T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 52789999999844677789899899999999999999999998 No 9 >cd01414 SAICAR_synt_Sc non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic, bacterial, and archaeal group of SAICAR synthetases represented by the Saccharomyces cerevisiae (Sc) enzyme, mostly absent in metazoans. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate. Probab=100.00 E-value=0 Score=522.79 Aligned_cols=211 Identities=21% Similarity=0.266 Sum_probs=198.1 Q ss_pred EEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEC------------ Q ss_conf 63613303768728899799999368245162014556888799999999999998733997405743------------ Q gi|254780973|r 6 PVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRR------------ 73 (255) Q Consensus 6 ~lyeGKvK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~------------ 73 (255) ++|+||||++|+++| +.++|+||||+||||+++++.|||||++||+||+|||++|++ ||||||++. T Consensus 1 l~~~GKvrdvY~~~d-~~ll~v~tDriSAFD~v~~~~Ip~KG~vl~~iS~~wF~~l~~-~i~nH~i~~~~~~~~~~~~~~ 78 (279) T cd01414 1 LIYSGKVRDVYDLGD-GRLLFVATDRISAFDVILPPDIPGKGEVLTQISAFWFELTED-IIPNHLISTDVEDLPEIKEPE 78 (279) T ss_pred CCCCCCCCEEEECCC-CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCEECCCCCCCCCCCCCC T ss_conf 975655644687599-849999958862356336789996489999999999999855-488637436663223322113 Q ss_pred -CCCCEEEEECCCCCCEEEEEECEEECCHHCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf -88400231002655359999244601010025-------------6433773786434443454456886415578888 Q gi|254780973|r 74 -INMREQLVRDVEMIPLLITVRNTAAGSLAKRL-------------NIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITA 139 (255) Q Consensus 74 -~~~~~~iv~k~~~iPiE~VvR~yaaGS~~kry-------------~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~ 139 (255) +++|+|+|+||+|||||||||||+|||+|++| |+.+|++|++|++||++|++..|||.|+.+++.. T Consensus 79 ~~~~r~m~vkk~~~iPiE~IvRgyl~GS~~~~Y~~~~~~~g~~lp~Gl~e~~kL~~Pi~tpstK~~~~hD~~is~~~~~~ 158 (279) T cd01414 79 DPDGRSMVVKKAKPIPIECIVRGYLTGSGWKEYQKGGTVCGIKLPEGLREAQKLPEPIFTPSTKAEEGHDENISFEEAVE 158 (279) T ss_pred CCCCCEEEEEEEEEEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHH T ss_conf 57986479874046317999955405432422036771148637876545666898535665235668998779999998 Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEEE-CCCCCEEEECCCCC------C Q ss_conf 5408989997899999999999999999879766312066631046888879999630-58741411767567------0 Q gi|254780973|r 140 FNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEI-FPDCCRLWDLSKKE------E 212 (255) Q Consensus 140 ~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEI-tPDs~R~Wd~~~~e------~ 212 (255) +++++++++|+++|+++|++++++|.++|++|||||||||++.+ |+|+|+||| ||||||||++++|+ + T Consensus 159 --~~~~~~~~~i~~~sl~i~~~~~~~~~~~GiiLvDtK~EFG~~~~---g~iiL~DEi~TPDssR~W~~~~y~~g~~~~s 233 (279) T cd01414 159 --IIGAELADELRELALALYERAAEYAAKRGLILADTKFEFGLDEN---GEIILIDEVLTPDSSRFWPADSYEPGKEQPS 233 (279) T ss_pred --HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCC---CCEEEEEECCCCCCCCCCCHHHCCCCCCCCC T ss_conf --66999999999999999999999999889889930245206589---9889985137985202332110036999543 Q ss_pred CCHHHHHCCHH Q ss_conf 44787612367 Q gi|254780973|r 213 CDKKRFSKSND 223 (255) Q Consensus 213 lDKd~~R~~l~ 223 (255) ||||++|+||. T Consensus 234 ~DKq~vRd~l~ 244 (279) T cd01414 234 FDKQFVRDWLE 244 (279) T ss_pred CCHHHHHHHHH T ss_conf 36799999999 No 10 >PRK13961 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Probab=100.00 E-value=0 Score=509.91 Aligned_cols=228 Identities=20% Similarity=0.262 Sum_probs=206.9 Q ss_pred CCCEEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCC------- Q ss_conf 8776361330376872889979999936824516201455688879999999999999873399740574388------- Q gi|254780973|r 3 PRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRIN------- 75 (255) Q Consensus 3 ~~~~lyeGKvK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~------- 75 (255) ..+++|+||||+||++++ +.|+|++|||+||||+++++.|||||++||+||+|||++|+++ |||||++... T Consensus 12 ~l~l~~~GKVRdvY~~~d-~~ll~v~tDRiSAFD~v~~~~IP~KG~vL~~iS~fwF~~l~~~-ipnH~i~~~~~~~~~~~ 89 (297) T PRK13961 12 SLPLLYRGKVRDIYDIGD-DRLLMVATDRISAFDVVLPEPIPDKGRVLTQISNFWFDKLADI-VPNHLTGTPDPSVVPAD 89 (297) T ss_pred CCCCCCCCCCCEEEECCC-CEEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCHHH T ss_conf 985103656723786499-9799999588620143368899967899999999999998605-77742258861133045 Q ss_pred ------CCEEEEECCCCCCEEEEEECEEECCHHCCC-------------CCCCCCCCCCCCCCCCCCCCC-CCCCCCCHH Q ss_conf ------400231002655359999244601010025-------------643377378643444345445-688641557 Q gi|254780973|r 76 ------MREQLVRDVEMIPLLITVRNTAAGSLAKRL-------------NIPEGLSLPRSLVEFYYLPDS-SEKTLVSEE 135 (255) Q Consensus 76 ------~~~~iv~k~~~iPiE~VvR~yaaGS~~kry-------------~~~~G~~l~~pl~e~~~K~d~-~~DP~i~~~ 135 (255) +|+|+|+||+|||||||||||+|||+|++| |+.++++|+.|++++++|++. .||+.|+.+ T Consensus 90 ~~~~~~~R~mlvkk~~~iPiE~VvR~y~aGS~~~~Y~~~g~~~G~~lp~gl~e~~~L~~Pi~tpstKa~~g~hD~~is~~ 169 (297) T PRK13961 90 EAEQVLGRAVVVKKLKPLPVECVVRGYLTGSGWKDYQATGTVCGIKLPEGLREAQKLPEPIFTPATKAELGEHDENISFE 169 (297) T ss_pred HHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHH T ss_conf 55541475304653253666899855404324777753385547758833111466898532644553323776557999 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEEE-CCCCCEEEECCCCC--- Q ss_conf 88885408989997899999999999999999879766312066631046888879999630-58741411767567--- Q gi|254780973|r 136 HITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEI-FPDCCRLWDLSKKE--- 211 (255) Q Consensus 136 ~~~~~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEI-tPDs~R~Wd~~~~e--- 211 (255) ++. ++++++++++|+++|++||++++++|.++|++|||||||||++.+| +|+|+||| |||||||||+++|+ T Consensus 170 ~~~--~~~g~e~~~~i~~~sl~i~~~~~~~a~~~GiiLvDtK~EFG~d~~g---~iiL~DEi~TPDSsRfW~~~~y~~G~ 244 (297) T PRK13961 170 EVV--ERVGAELAAQLRDVTLALYKRAAEYAAERGIIIADTKFEFGLDEDG---TLVLIDEVLTPDSSRYWPADGYQVGT 244 (297) T ss_pred HHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCC---CEEEEEECCCCCCCCCCCHHHHCCCC T ss_conf 999--8719999999999999999999999998896797201232246999---88997503688522345344302799 Q ss_pred ---CCCHHHHHCCHH-------------------HHHHHHHHHHHHHC Q ss_conf ---044787612367-------------------79999999999714 Q gi|254780973|r 212 ---ECDKKRFSKSND-------------------QLLEGYSEVARRLG 237 (255) Q Consensus 212 ---~lDKd~~R~~l~-------------------~v~~~Y~ev~~rl~ 237 (255) +||||++|+||. .+.++|.++++||- T Consensus 245 ~~~s~DKq~vRdwl~~~~~~~~~~~P~lP~~iv~~t~~~Y~~~ye~iT 292 (297) T PRK13961 245 NPPSFDKQFVRDWLETSGWDKTPPAPPLPAEVIEKTAEKYIEALERLT 292 (297) T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 865447799999999659999999999999999999999999999986 No 11 >PRK13959 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Probab=100.00 E-value=0 Score=455.35 Aligned_cols=209 Identities=22% Similarity=0.230 Sum_probs=187.9 Q ss_pred ECCCEEEEECCCC-----CEEEEEEECCCEEECC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECC-------- Q ss_conf 1330376872889-----9799999368245162-0145568887999999999999987339974057438-------- Q gi|254780973|r 9 EEKTKIIYEGLEP-----GTLIQFFKDDNLLENN-PRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRI-------- 74 (255) Q Consensus 9 eGKvK~iY~~~d~-----~~li~~~~DriSAfD~-~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~-------- 74 (255) .||||++|..+++ +.++|+||||+||||. ++++.|||||++||+||+|||++|+++||||||++.. T Consensus 1 ~GKVRDiY~~~~~~~~~~~~ll~V~TDRiSAFD~~vlp~~IP~KG~vL~~iS~fWF~~l~~~gIpnH~i~~~~~~~~~~~ 80 (335) T PRK13959 1 MGSVKDLYVDEPPTETDLGRGVFVFSDRYSVFDWGIMPDEIPDKGESLCRMGAYWFELLEELGIKTHYIGLVEGDKVRLD 80 (335) T ss_pred CCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCH T ss_conf 99744442258654567874899980886534525146999973299999999999977646988603135675432200 Q ss_pred ----CCCEEEEECCC-----------------------CCCEEEEEECEE-ECCHHCCC---------------CCCCCC Q ss_conf ----84002310026-----------------------553599992446-01010025---------------643377 Q gi|254780973|r 75 ----NMREQLVRDVE-----------------------MIPLLITVRNTA-AGSLAKRL---------------NIPEGL 111 (255) Q Consensus 75 ----~~~~~iv~k~~-----------------------~iPiE~VvR~ya-aGS~~kry---------------~~~~G~ 111 (255) .+++|+|++++ |||||||||||+ +||.|++| |..+|+ T Consensus 81 ~~~~~~~~m~v~~~~v~~~~~~~~~~~~~~~~~~~~~~miPiE~IvRgYl~~gss~~~~~~~g~v~~~gi~lp~gl~~~~ 160 (335) T PRK13959 81 EAKSAPNEMVVKLTQVPKLPFEDGSYDYSIFHAAGGNYLIPLEFIFRNYVPVGSSLRDRIKPGEVKPEDIGLDEWPEYGE 160 (335) T ss_pred HCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 02588753688873114543344321111000124356557799994230573279998864871204777886543457 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEE Q ss_conf 37864344434544568864155788885408989997899999999999999999879766312066631046888879 Q gi|254780973|r 112 SLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRI 191 (255) Q Consensus 112 ~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~i 191 (255) +|+.|||+|++|.+. ||+.||.+++..++.++.+++++|+++|+++|+.++++|.++||||||||||||++.+ |+| T Consensus 161 kLp~PifTPsTKae~-hD~~is~~e~~~~~g~~~a~~~~l~~~sl~ly~~~~~~a~~~GiILaDTKfEFG~d~d---g~l 236 (335) T PRK13959 161 KLPEPIVEFSTKLEE-TDRYLSRSEALEIAGLSDAEIEELEELARKIDEIITEEVEKRGLIHEDGKKEFALDLE---REI 236 (335) T ss_pred CCCCCEEECCCCCCC-CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCC---CCE T ss_conf 488763303456645-8988899999987599999999999999999999999999789868864056017799---978 Q ss_pred EEEEEE-CCCCCEEEECCCCCCCCHHHHHCCHH Q ss_conf 999630-58741411767567044787612367 Q gi|254780973|r 192 VLADEI-FPDCCRLWDLSKKEECDKKRFSKSND 223 (255) Q Consensus 192 iL~DEI-tPDs~R~Wd~~~~e~lDKd~~R~~l~ 223 (255) +|+||| |||||||| ....++|||++|+|+. T Consensus 237 vLiDEvlTPDSSRf~--~~~~~~~Kq~~r~~~~ 267 (335) T PRK13959 237 MVVDVVGTFDEDRFS--FEGVEVSKEMVRQYYR 267 (335) T ss_pred EEEEECCCCCCCCCC--CCCCCCCHHHHHHHHH T ss_conf 999866898623468--8887768688888987 No 12 >PRK13960 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Probab=100.00 E-value=0 Score=428.90 Aligned_cols=247 Identities=18% Similarity=0.218 Sum_probs=206.3 Q ss_pred CCEEEECCCEEEEEC-----------------CCCCEEEEEEECCCEEECCCCCC-----CCCCHHHHHHHHHHHHHHHH Q ss_conf 776361330376872-----------------88997999993682451620145-----56888799999999999998 Q gi|254780973|r 4 RNPVYEEKTKIIYEG-----------------LEPGTLIQFFKDDNLLENNPRCA-----TLNGKGVLNNRISEYMFTQL 61 (255) Q Consensus 4 ~~~lyeGKvK~iY~~-----------------~d~~~li~~~~DriSAfD~~~~~-----~I~gKG~~l~~iS~~~F~~l 61 (255) -+++|+||||.||.. .|...++||.|||+||||.+++. .|||||++||+||+|||+++ T Consensus 19 ~~~vhsgkvrsvy~l~~~ds~rli~~~~y~~~~d~~l~lmVaSDRISAFD~Vl~~e~~l~gIP~KG~vLn~iS~fWF~~~ 98 (367) T PRK13960 19 DKPVHSGKVRSVYWLTEEDSRRLIKEKGYNVPADTPLAIMVISDRISAFDCIWHGEGGLKGVPGKGAALNAISNHWFKLF 98 (367) T ss_pred CCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 88754672257885266777789986398889999889999705753015750475657899970599999999999744 Q ss_pred HHCC-CCCEEEECCCCCEEEEECCCCCCEEEEEECEEECCHHCCCC--------------CCCCCCCCCCCCCCCCCC-- Q ss_conf 7339-97405743884002310026553599992446010100256--------------433773786434443454-- Q gi|254780973|r 62 GKIG-IPHYFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLN--------------IPEGLSLPRSLVEFYYLP-- 124 (255) Q Consensus 62 ~~~G-i~th~i~~~~~~~~iv~k~~~iPiE~VvR~yaaGS~~kry~--------------~~~G~~l~~pl~e~~~K~-- 124 (255) ...| ++||+++.+++.+|+||||+|+|||||||||+|||+|+.|. +.++++|+.||+++++|. T Consensus 99 ~~~~l~~nHild~P~p~v~iVkKakpipIE~VVRGYLTGS~WreY~kg~r~vCGi~LP~GL~e~qkLpepIfTPSTKA~~ 178 (367) T PRK13960 99 KENGLADSHILDIPHPFVWIVQKARPVKIEAICRQYITGSMWRAYSKGEREFCGITLPEGLEKDQKLPELLITPSTKGIL 178 (367) T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCCHHHHHHCCCEEECCCCCCCHHHHCCCCCCCCCCCCCCCC T ss_conf 76688776333478863478885555259999985112402898861787486856673102224598755078865545 Q ss_pred ------CCCCCCCCCHHHHH----HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCC-CCEEEE Q ss_conf ------45688641557888----8540898999789999999999999999987976631206663104688-887999 Q gi|254780973|r 125 ------DSSEKTLVSEEHIT----AFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDD-ILRIVL 193 (255) Q Consensus 125 ------d~~~DP~i~~~~~~----~~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~-~g~iiL 193 (255) ...||-.|+.+.+. ++++...+++....++..+.|+++++++.++|+||||||||||+..|.+ .++|+| T Consensus 179 ~g~~~v~~~hD~nIs~~~i~~~~~~~~~~~~~di~~~e~l~~~~f~~~~~~a~~~GiILaDTKFEFG~~~d~~G~~~LIL 258 (367) T PRK13960 179 TGIPGVPEADDVNISRSDIEANYQAFNFEKAEDIDLYEKLLKEGFKVISKALAKLDQIFVDTKFEFGYVTDANGNEKLIY 258 (367) T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEEE T ss_conf 68878876555656999999987553111399999999999999999999999799389976712774468888616999 Q ss_pred EEEE-CCCCCEEEECCCCCC-----CCHHHHHCCH---------------------------------HHHHHHHHHHHH Q ss_conf 9630-587414117675670-----4478761236---------------------------------779999999999 Q gi|254780973|r 194 ADEI-FPDCCRLWDLSKKEE-----CDKKRFSKSN---------------------------------DQLLEGYSEVAR 234 (255) Q Consensus 194 ~DEI-tPDs~R~Wd~~~~e~-----lDKd~~R~~l---------------------------------~~v~~~Y~ev~~ 234 (255) +||| |||||||||+++|+. -+|+.||++| -++...|.++++ T Consensus 259 iDEVlTPDSSRfW~ad~Y~~G~~~ensKe~FRq~ll~~~~Dpd~llnk~rm~eR~~~a~~~~lP~evv~~~S~~Yi~~~E 338 (367) T PRK13960 259 MDEVGTPDSSRIWDGAAYRDGKIVENSKEGFRQFLLNHFPDPDILLNKDRMPEREALARDNALPLEVMMDVSRTYTGIAE 338 (367) T ss_pred EECCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 85578887455564321468865556558899999853887101246111420111477777989999999999999999 Q ss_pred HHCCCCCCCCCCCCCC Q ss_conf 7142323687888652 Q gi|254780973|r 235 RLGIFKKNEPALKENL 250 (255) Q Consensus 235 rl~~~~~~~p~~~~~~ 250 (255) |+-.-.=..|+-|... T Consensus 339 ~ItG~~~~~~~~P~~~ 354 (367) T PRK13960 339 KITGAKIVLSANPKAE 354 (367) T ss_pred HHHCCCCCCCCCCHHH T ss_conf 9708965578885899 No 13 >TIGR02735 purC_vibrio phosphoribosylaminoimidazole-succinocarboxamide synthase; InterPro: IPR014106 Members of this protein family appear to represent a novel form of phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase), significantly different in sequence from (IPR001636 from INTERPRO), which is found in a broad range of bacteria and eukaryotes. Members of this family are found within the gammaproteobacteria in the genera Vibrio, Shewanella, and Colwellia, and also (reported as a fragment) in the primitive eukaryote Guillardia theta (Cryptomonas phi).. Probab=100.00 E-value=0 Score=321.44 Aligned_cols=235 Identities=18% Similarity=0.214 Sum_probs=202.8 Q ss_pred CCCEEEECCCEEEEECCCCC-----------------EEEEEEECCCEEECCCCC-----CCCCCHHHHHHHHHHHHHHH Q ss_conf 87763613303768728899-----------------799999368245162014-----55688879999999999999 Q gi|254780973|r 3 PRNPVYEEKTKIIYEGLEPG-----------------TLIQFFKDDNLLENNPRC-----ATLNGKGVLNNRISEYMFTQ 60 (255) Q Consensus 3 ~~~~lyeGKvK~iY~~~d~~-----------------~li~~~~DriSAfD~~~~-----~~I~gKG~~l~~iS~~~F~~ 60 (255) .-+.+|+||||.||.+.+.| ..+|+-|||+||||.+=+ ..+||||+.||++|..||+. T Consensus 17 Td~~VHSGKVRSVYWL~~~DSRRLI~~k~Y~Va~DA~LAI~viSDR~SAFDCIW~aEGG~~GVPGKGAALNAiS~~WF~~ 96 (365) T TIGR02735 17 TDEPVHSGKVRSVYWLTEEDSRRLIEEKGYPVAEDAPLAILVISDRISAFDCIWHAEGGLKGVPGKGAALNAISNHWFKL 96 (365) T ss_pred CCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCEEEEEEECHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 88852356301465158023578886368888877550466533100033300014787336686207888888999999 Q ss_pred HHHCCC-CCEEEECCCCCEEEEECCCCCCEEEEEECEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH---- Q ss_conf 873399-740574388400231002655359999244601010025643377378643444345445688641557---- Q gi|254780973|r 61 LGKIGI-PHYFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEE---- 135 (255) Q Consensus 61 l~~~Gi-~th~i~~~~~~~~iv~k~~~iPiE~VvR~yaaGS~~kry~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~---- 135 (255) +.+.|+ ..|.++.++|-.++|+|++||.||.|+|-|+|||+||.|..+|...|..-+++..-|+..|..-+|||+ T Consensus 97 F~~~gLA~SHIL~~PHP~vWiVQkAkPv~IEAI~RQYITGS~WRaYaKGER~FCG~~lP~~L~~~~~LpElLiTPS~KGi 176 (365) T TIGR02735 97 FKEAGLAESHILDIPHPFVWIVQKAKPVKIEAICRQYITGSLWRAYAKGEREFCGIDLPEGLEKDQRLPELLITPSTKGI 176 (365) T ss_pred HHHCCCCHHHHCCCCCCEEEEEECCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCEEECCCCCCC T ss_conf 87457400100158987189874376214300000123233454211566434677552123430568826766876210 Q ss_pred ----------------------HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCC-CEEE Q ss_conf ----------------------88885408989997899999999999999999879766312066631046888-8799 Q gi|254780973|r 136 ----------------------HITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDI-LRIV 192 (255) Q Consensus 136 ----------------------~~~~~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~-g~ii 192 (255) +-.++|.-..++++..+.+-.+=|..+++...+.|-+.||||||||+.++.+. .+|+ T Consensus 177 L~G~~Gv~~~DDVNItR~dIE~~~~~~~F~~p~DIdHYE~LL~~GF~VIs~~L~~lgQlFVDTKFEFGY~td~~G~~~LI 256 (365) T TIGR02735 177 LEGIPGVPAIDDVNITRKDIERNYSAFNFEQPEDIDHYERLLREGFAVISDRLSKLGQLFVDTKFEFGYVTDVEGKRKLI 256 (365) T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEECCCCCEEEE T ss_conf 15788864424444667889989997078986312689999862589999877326743654001010111677762336 Q ss_pred EEEEE-CCCCCEEEECCCCCC---C--CHHHHHCC---------------------------------HHHHHHHHHHHH Q ss_conf 99630-587414117675670---4--47876123---------------------------------677999999999 Q gi|254780973|r 193 LADEI-FPDCCRLWDLSKKEE---C--DKKRFSKS---------------------------------NDQLLEGYSEVA 233 (255) Q Consensus 193 L~DEI-tPDs~R~Wd~~~~e~---l--DKd~~R~~---------------------------------l~~v~~~Y~ev~ 233 (255) .+||+ ||||||+||+..|.. + -|+=||+- |=+|.+.|-.|| T Consensus 257 YMDEVGTPDSSRIW~A~~Y~~G~i~ENSKEgFRQ~LlN~~PD~~~LL~K~RM~ER~AlA~~~~LP~~~L~dvS~~YlgIA 336 (365) T TIGR02735 257 YMDEVGTPDSSRIWDAGAYAQGKIVENSKEGFRQLLLNYFPDPDILLNKDRMVERAALARDNALPQEVLLDVSKTYLGIA 336 (365) T ss_pred EEECCCCCCCHHHHCHHHCCCCCEEECCCCHHHHHHHHCCCCHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH T ss_conf 75146888601221244105882775275026888864078722202555405788752155574899999999999877 Q ss_pred HHHC Q ss_conf 9714 Q gi|254780973|r 234 RRLG 237 (255) Q Consensus 234 ~rl~ 237 (255) .++- T Consensus 337 ~~I~ 340 (365) T TIGR02735 337 EKIT 340 (365) T ss_pred HHHC T ss_conf 6634 No 14 >KOG2835 consensus Probab=99.97 E-value=1.4e-32 Score=224.95 Aligned_cols=230 Identities=25% Similarity=0.348 Sum_probs=201.7 Q ss_pred CCEEEECCCEEEEECC-CCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEE Q ss_conf 7763613303768728-899799999368245162014556888799999999999998733997405743884002310 Q gi|254780973|r 4 RNPVYEEKTKIIYEGL-EPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQLVR 82 (255) Q Consensus 4 ~~~lyeGKvK~iY~~~-d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~~~~~iv~ 82 (255) .++|++||||++|... .++.++...+|++||||+++...|++||.+++++|.+||+.|...|++|+|.++.+.+...+. T Consensus 12 ~k~la~gkvr~v~~~~~~~~~vlti~kD~I~a~~~~~a~~I~~ka~il~k~t~~~F~~l~~~gv~~~~~~~~~~t~~~~~ 91 (373) T KOG2835 12 GKELAEGKVRDVYELVDSPGLVLTISKDRITALDAAMANSIQGKAAILNKITSFVFELLGEAGIETAFTEQCGETAFEAR 91 (373) T ss_pred HHHHHEEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHCC T ss_conf 32343454421024566887367765054103444542012567789887666667654032012111034441344227 Q ss_pred CCCCCCEEEEEECEEECCHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH--HHHCCHHHHHHHHHHHHHHH Q ss_conf 026553599992446010100256-433773786434443454456886415578888--54089899978999999999 Q gi|254780973|r 83 DVEMIPLLITVRNTAAGSLAKRLN-IPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITA--FNWANQSEVEEMTALSIRIN 159 (255) Q Consensus 83 k~~~iPiE~VvR~yaaGS~~kry~-~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~--~~~~~~~~~~~i~~~a~~i~ 159 (255) +|.|.|+|++.|.-++||+.++++ +++|.++..+..+-+.|++..+||....+++.. .-++.++++..+++..+-+| T Consensus 92 p~~~~~~~~v~~~~~ts~f~k~~~~vp~~~~~~~~~~~S~~k~~a~~~n~~g~e~~~~~~~~li~r~~~~~~~~~~~~if 171 (373) T KOG2835 92 PCPMTPIEWVTRRCATSSFEKKNPGVPEGYRFRGYKTESTFKDDANMDNVWGDEQIIDCAGLLIGRDEVKIMQKLPLYIF 171 (373) T ss_pred CCCCCCCEEEEEECCHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCCHH T ss_conf 88778730478622236688758667654153476565200221223763330134444433301011441000440001 Q ss_pred HHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEE-EEECCCCCEEEECCCCCC-CCHHHHHCCHH-------HHHHHHH Q ss_conf 99999999879766312066631046888879999-630587414117675670-44787612367-------7999999 Q gi|254780973|r 160 DFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLA-DEIFPDCCRLWDLSKKEE-CDKKRFSKSND-------QLLEGYS 230 (255) Q Consensus 160 ~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~-DEItPDs~R~Wd~~~~e~-lDKd~~R~~l~-------~v~~~Y~ 230 (255) +.+..-+..+...++|.|.|||++.+ .++++++ |++..|+||.|+.+++.. .||+++++--+ =+.++|. T Consensus 172 es~k~~~~~h~~~I~d~~ie~gv~~~--~~~~~~a~~v~~~~~~r~~~~~d~~im~D~~~~~d~~~vt~e~~ilv~~~~t 249 (373) T KOG2835 172 ESLKAAWAGHNCAISDMKIEFGVDVT--LGEIVLASDVIDNDSWRMWPDGDGRIMKDKKVYFDLDEVTNEGLILVDENTT 249 (373) T ss_pred HHHHHHHCCCCCCCCCCHHHHCCCHH--HHHHHHHHCCCCHHHEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCC T ss_conf 02345424776535642344403343--6555553103531234770067766443006784565777511588840377 Q ss_pred HHHHH Q ss_conf 99997 Q gi|254780973|r 231 EVARR 235 (255) Q Consensus 231 ev~~r 235 (255) ++..| T Consensus 250 ~~msr 254 (373) T KOG2835 250 PVMSR 254 (373) T ss_pred HHHHH T ss_conf 04666 No 15 >KOG2835 consensus Probab=99.40 E-value=7.6e-14 Score=107.17 Aligned_cols=163 Identities=16% Similarity=0.016 Sum_probs=133.1 Q ss_pred HHHHHHHCCCCCEEEECCCCCEEEEECCCCCCEEEEEECEEECCHHCCCC-----------------------CCCCCCC Q ss_conf 99998733997405743884002310026553599992446010100256-----------------------4337737 Q gi|254780973|r 57 MFTQLGKIGIPHYFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLN-----------------------IPEGLSL 113 (255) Q Consensus 57 ~F~~l~~~Gi~th~i~~~~~~~~iv~k~~~iPiE~VvR~yaaGS~~kry~-----------------------~~~G~~l 113 (255) ||+.....-+|.|++.+.-.+.+.++++..||.|.++|+|.+||+|+.+. ...+..+ T Consensus 87 ~~~~~p~~~~~~~~v~~~~~ts~f~k~~~~vp~~~~~~~~~~~S~~k~~a~~~n~~g~e~~~~~~~~li~r~~~~~~~~~ 166 (373) T KOG2835 87 AFEARPCPMTPIEWVTRRCATSSFEKKNPGVPEGYRFRGYKTESTFKDDANMDNVWGDEQIIDCAGLLIGRDEVKIMQKL 166 (373) T ss_pred HHHCCCCCCCCCEEEEEECCHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCHHHCCCCCCC T ss_conf 44227887787304786222366887586676541534765652002212237633301344444333010114410004 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEE Q ss_conf 86434443454456886415578888540898999789999999999999999987976631206663104688887999 Q gi|254780973|r 114 PRSLVEFYYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVL 193 (255) Q Consensus 114 ~~pl~e~~~K~d~~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL 193 (255) +.+++|-..+....|+-.|.+..++.. +...+.+...+.+...|....-...+.|.+++|+|+|||++...+++ ++| T Consensus 167 ~~~ifes~k~~~~~h~~~I~d~~ie~g--v~~~~~~~~~a~~v~~~~~~r~~~~~d~~im~D~~~~~d~~~vt~e~-~il 243 (373) T KOG2835 167 PLYIFESLKAAWAGHNCAISDMKIEFG--VDVTLGEIVLASDVIDNDSWRMWPDGDGRIMKDKKVYFDLDEVTNEG-LIL 243 (373) T ss_pred CCCHHHHHHHHHCCCCCCCCCCHHHHC--CCHHHHHHHHHHCCCCHHHEEEEECCCCCEEEEEEEEECCCCCCCCC-EEE T ss_conf 400010234542477653564234440--33436555553103531234770067766443006784565777511-588 Q ss_pred EEEE-CCCCCE-----------EEECCCCC------CCCHHHHHCCH Q ss_conf 9630-587414-----------11767567------04478761236 Q gi|254780973|r 194 ADEI-FPDCCR-----------LWDLSKKE------ECDKKRFSKSN 222 (255) Q Consensus 194 ~DEI-tPDs~R-----------~Wd~~~~e------~lDKd~~R~~l 222 (255) .||. |||++| +|=...|+ +.||++-|.|. T Consensus 244 v~~~~t~~msr~a~~a~~~~~~~~iaga~~~~~~p~~v~a~f~~~gv 290 (373) T KOG2835 244 VDENTTPVMSRYATSAKSRGVVLWIAGAYKAGHEPLMVDAEFERPGV 290 (373) T ss_pred EEECCCHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCC T ss_conf 84037704666654025666189995167777772567764636685 No 16 >PRK13961 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Probab=88.22 E-value=0.39 Score=27.34 Aligned_cols=129 Identities=13% Similarity=0.123 Sum_probs=71.2 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH----HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCC Q ss_conf 77378643444345445688641557888854----08989997899999999999999999879766312066631046 Q gi|254780973|r 110 GLSLPRSLVEFYYLPDSSEKTLVSEEHITAFN----WANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLD 185 (255) Q Consensus 110 G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~----~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~ 185 (255) |..++.++.+...+++.+.+|+++++.....| -++.+++..+ .+.+.++.+++...+..-.+.+.--+ T Consensus 129 g~~~G~~lp~gl~e~~~L~~Pi~tpstKa~~g~hD~~is~~~~~~~--~g~e~~~~i~~~sl~i~~~~~~~a~~------ 200 (297) T PRK13961 129 GTVCGIKLPEGLREAQKLPEPIFTPATKAELGEHDENISFEEVVER--VGAELAAQLRDVTLALYKRAAEYAAE------ 200 (297) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHH------ T ss_conf 8554775883311146689853264455332377655799999987--19999999999999999999999998------ Q ss_pred CCCCEEEEEEE---EC--CC-CCEEEEC-CCC---CCCCHHHHHCCHH------HHHHHHHHHHHHHCCCCCCCCC-CCC Q ss_conf 88887999963---05--87-4141176-756---7044787612367------7999999999971423236878-886 Q gi|254780973|r 186 DDILRIVLADE---IF--PD-CCRLWDL-SKK---EECDKKRFSKSND------QLLEGYSEVARRLGIFKKNEPA-LKE 248 (255) Q Consensus 186 ~~~g~iiL~DE---It--PD-s~R~Wd~-~~~---e~lDKd~~R~~l~------~v~~~Y~ev~~rl~~~~~~~p~-~~~ 248 (255) .| |+|+|- .. +| .--+=|- .|. .--||+-|+.+.. +.+..|- .. ..|.++.|+ ..| T Consensus 201 --~G-iiLvDtK~EFG~d~~g~iiL~DEi~TPDSsRfW~~~~y~~G~~~~s~DKq~vRdwl---~~-~~~~~~~~~P~lP 273 (297) T PRK13961 201 --RG-IIIADTKFEFGLDEDGTLVLIDEVLTPDSSRYWPADGYQVGTNPPSFDKQFVRDWL---ET-SGWDKTPPAPPLP 273 (297) T ss_pred --CC-CEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHH---HH-CCCCCCCCCCCCC T ss_conf --89-67972012322469998899750368852234534430279986544779999999---96-5999999999999 Q ss_pred CCCCC Q ss_conf 52223 Q gi|254780973|r 249 NLILN 253 (255) Q Consensus 249 ~~~~~ 253 (255) ..|++ T Consensus 274 ~~iv~ 278 (297) T PRK13961 274 AEVIE 278 (297) T ss_pred HHHHH T ss_conf 99999 No 17 >PRK12607 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Probab=85.00 E-value=0.25 Score=28.48 Aligned_cols=125 Identities=10% Similarity=-0.020 Sum_probs=74.5 Q ss_pred CCEEEEEEC---EEECCHHCCCCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH----HHCCHH Q ss_conf 535999924---4601010025643-------------37737864344434544568864155788885----408989 Q gi|254780973|r 87 IPLLITVRN---TAAGSLAKRLNIP-------------EGLSLPRSLVEFYYLPDSSEKTLVSEEHITAF----NWANQS 146 (255) Q Consensus 87 iPiE~VvR~---yaaGS~~kry~~~-------------~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~----~~~~~~ 146 (255) -|-+.+||. ...--.+|.|-.+ +|..+..++++...+++.+.+|++++...... ..++.+ T Consensus 80 ~~~~~lvkk~~~iPiE~VvRgy~aGS~~k~y~~~y~~g~~~~~g~~lp~gl~~~~~Lp~PiftpstK~d~~~hD~~Is~~ 159 (295) T PRK12607 80 DPNVVLGRRLTVLPVECVVRGYLAGSTWTSILTLYKAGERTMYGERLPDGLRENQKLPPPIFTPTTKAFEGGHDEPLTIA 159 (295) T ss_pred CCHHHEEEECEEEEEEEEECCCEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHH T ss_conf 73122010021664577752710021168888775047753126556654446766888745566303334788777778 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEE---EC--CCC-CEEEEC----CCCCCCCHH Q ss_conf 99789999999999999999987976631206663104688887999963---05--874-141176----756704478 Q gi|254780973|r 147 EVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADE---IF--PDC-CRLWDL----SKKEECDKK 216 (255) Q Consensus 147 ~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DE---It--PDs-~R~Wd~----~~~e~lDKd 216 (255) ++....-++.+.++.+.+...+..-++.+.--+- | |+|+|- .. .|. --+=|- ++..--|++ T Consensus 160 ~i~~~~l~~~e~~~~i~~~sl~i~~~~~~~~~~~--------G-iiLvDtK~EFG~d~~G~iiL~DEi~TPDSsR~W~~~ 230 (295) T PRK12607 160 EIVARGLLTDEQWYTLESMALALFTRGEEIAAEQ--------G-LILADTKYEFGRDADGRIILADEIHTPDSSRYWAAD 230 (295) T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------C-CEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCHH T ss_conf 9998658988999999999999999999999978--------9-789985233126699988997640488501244243 Q ss_pred HHHC Q ss_conf 7612 Q gi|254780973|r 217 RFSK 220 (255) Q Consensus 217 ~~R~ 220 (255) -|+. T Consensus 231 ~Y~~ 234 (295) T PRK12607 231 SYPA 234 (295) T ss_pred HHHH T ss_conf 4345 No 18 >TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases; InterPro: IPR004507 This family contains flavoproteins, which are aromatic acid decarboxylases. An example is the Saccharomyces cerevisiae gene, PAD1 that encodes phenylacrylic acid decarboxylase. Mutations of this gene are viable and confer resistance to cinnamic acid. ; GO: 0016831 carboxy-lyase activity. Probab=49.74 E-value=7.9 Score=19.09 Aligned_cols=85 Identities=15% Similarity=0.208 Sum_probs=66.8 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEC---------------------------------------CCCCEEEEECCCCC Q ss_conf 799999999999998733997405743---------------------------------------88400231002655 Q gi|254780973|r 47 GVLNNRISEYMFTQLGKIGIPHYFIRR---------------------------------------INMREQLVRDVEMI 87 (255) Q Consensus 47 G~~l~~iS~~~F~~l~~~Gi~th~i~~---------------------------------------~~~~~~iv~k~~~i 87 (255) |+----......+.|.+.|+.+|++-- -.-+.|+|-+|.|= T Consensus 8 GAsGvI~G~RLL~~Lk~~GvE~~LviS~~A~~tiK~Etd~~~~~v~~LAT~~Y~~~D~~a~i~SGSf~~Dgm~VvPCSmK 87 (181) T TIGR00421 8 GASGVIYGIRLLEVLKELGVEVHLVISKWAKKTIKYETDYDPGEVEELATKYYDEDDFAAPIASGSFKFDGMVVVPCSMK 87 (181) T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEECCCHH T ss_conf 24489999999999986793687863558999998853899889999967532611211000157867682688648567 Q ss_pred CEEEEEECEEECCHHCC-----------------CCC------------CCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 35999924460101002-----------------564------------337737864344434544568864 Q gi|254780973|r 88 PLLITVRNTAAGSLAKR-----------------LNI------------PEGLSLPRSLVEFYYLPDSSEKTL 131 (255) Q Consensus 88 PiE~VvR~yaaGS~~kr-----------------y~~------------~~G~~l~~pl~e~~~K~d~~~DP~ 131 (255) -+=.|.-||+.-++.|. .|+ +.|...=||++-||.|+...||=. T Consensus 88 tLsaIa~G~a~NLitRAADV~LKErRkLvL~~REtPL~SiHLENmL~L~~~G~IIlPP~PaFY~rPkS~~Dl~ 160 (181) T TIGR00421 88 TLSAIANGYAENLITRAADVALKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILPPVPAFYNRPKSVEDLI 160 (181) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHH T ss_conf 8999985110556888975542205424640367887515489999998279253279554447898878898 No 19 >TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit; InterPro: IPR006443 This family of sequences describe a subset of formate dehydrogenase alpha chains found mainly in proteobacteria but also in Aquifex aeolicus. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits of 32 and 20 kDa. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilised mainly in the nitrate respiration by nitrate reductase . In Escherichia coli and Salmonella typhi, there are two forms of the formate dehydrogenase, one induced by nitrate which is strictly anaerobic (fdn), and one incuced during the transition from aerobic to anaerobic growth (fdo). This subunit is one of only three proteins in Escherichia coli which contain selenocysteine .; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0005737 cytoplasm. Probab=36.78 E-value=17 Score=17.04 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=15.9 Q ss_pred EEEEECEEECCHHCCC--CCCCC-CCCCCCCCCCCCCCCCCCCC Q ss_conf 9999244601010025--64337-73786434443454456886 Q gi|254780973|r 90 LITVRNTAAGSLAKRL--NIPEG-LSLPRSLVEFYYLPDSSEKT 130 (255) Q Consensus 90 E~VvR~yaaGS~~kry--~~~~G-~~l~~pl~e~~~K~d~~~DP 130 (255) |=+.|=||++|++++- +++|- +....|+.+...-....||| T Consensus 851 EG~grLfa~~syv~~~dGPlPEhYEP~EsPv~~npfhP~v~hnP 894 (1043) T TIGR01553 851 EGVGRLFAADSYVKIEDGPLPEHYEPVESPVITNPFHPNVLHNP 894 (1043) T ss_pred CCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 77667615641565047878864378447656778887876772 No 20 >KOG2646 consensus Probab=34.70 E-value=35 Score=15.07 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=42.5 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEC Q ss_conf 433773786434443454456886415578888540898---99978999999999999999998797663120666310 Q gi|254780973|r 107 IPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQ---SEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRL 183 (255) Q Consensus 107 ~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~~~~---~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~ 183 (255) -..|.+|.+-+++.+.+...+ |- ..++.+. ..+.+...-++..-+...+++..+|+.+||.+=|.++. T Consensus 276 ~GfGLrcn~il~kIC~~~GIK-Di--------s~kv~GsrN~m~i~k~~~e~l~~qet~qqlA~rkG~hvVdVr~e~~~~ 346 (396) T KOG2646 276 DGFGLRCNPILIKICECAGIK-DI--------SGKVKGSRNEMNITKAAFEALALQETHQQLAYRKGLHVVDVRGEVYRL 346 (396) T ss_pred CCCCCCCCHHHHHHHHHHCCC-CC--------CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEC T ss_conf 865450058999999984630-00--------112402300778999999987643326777874597489832513223 Q ss_pred C Q ss_conf 4 Q gi|254780973|r 184 L 184 (255) Q Consensus 184 ~ 184 (255) . T Consensus 347 t 347 (396) T KOG2646 347 T 347 (396) T ss_pred C T ss_conf 5 No 21 >pfam10866 DUF2704 Protein of unknown function (DUF2704). This viral family of proteins has no known function. Probab=33.70 E-value=14 Score=17.50 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=44.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE Q ss_conf 02564337737864344434544568864155788885408989997899999999999999999879766 Q gi|254780973|r 103 KRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQL 173 (255) Q Consensus 103 kry~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~L 173 (255) ..|. ..|.++.+..+|.+..-..+-| ..-+..-.-++..++++..++.+.+|++++.+|-.--+.| T Consensus 21 ~eyT-VDGLkLKp~YVeYYkqLq~lVd----~~Vm~lSK~l~mKEydeVySLgRQLYEiLRglFVDEPFKL 86 (169) T pfam10866 21 DEYT-VDGLKLKPAYVEYYKQLQILVD----FLVMTLSKELNMKEYDEVYSLGRQLYEILRGLFVDEPFKL 86 (169) T ss_pred HHCC-CCCEECCHHHHHHHHHHHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 4312-4465436999999999999999----9999998751818899999999999999987751760899 No 22 >COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism] Probab=31.91 E-value=12 Score=17.87 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=71.8 Q ss_pred CCCCEEEEEECEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHCCHHHHHHHHHHHHHHHHHH Q ss_conf 65535999924460101002564337737864344434544568864155788--8854089899978999999999999 Q gi|254780973|r 85 EMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHI--TAFNWANQSEVEEMTALSIRINDFM 162 (255) Q Consensus 85 ~~iPiE~VvR~yaaGS~~kry~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~--~~~~~~~~~~~~~i~~~a~~i~~~l 162 (255) .-.-+++|+=+-.+||+..-.+.. ..+...+- . +.+=|.++.... .+++.++..-+.-+.-...++|... T Consensus 64 ada~vdvI~Y~CtsgS~i~G~~~d--~ei~~~ie-----~-~~~v~vvTts~Avv~aL~al~a~ri~vlTPY~~evn~~e 135 (238) T COG3473 64 ADAGVDVIVYGCTSGSLIGGPGYD--KEIAQRIE-----E-AKGVPVVTTSTAVVEALNALGAQRISVLTPYIDEVNQRE 135 (238) T ss_pred CCCCCCEEEEECCCEEEECCCCHH--HHHHHHHH-----H-CCCCCEEECHHHHHHHHHHHCCCEEEEECCCHHHHHHHH T ss_conf 756667899962620164277455--99999998-----6-269855614089999998617515898525305441589 Q ss_pred HHHHHHCCCEEECCC-------EEEEECCCCCCCEEEEEEEE-CCCCCEEEECCC Q ss_conf 999998797663120-------66631046888879999630-587414117675 Q gi|254780973|r 163 TGLFLGINIQLVDFR-------IKCGRLLDDDILRIVLADEI-FPDCCRLWDLSK 209 (255) Q Consensus 163 ~~~~~~~Gl~LvD~K-------~EFG~~~~~~~g~iiL~DEI-tPDs~R~Wd~~~ 209 (255) .++++..|+..+|+| +|.|+..-- --.-|+-++ +||.--++-..+ T Consensus 136 ~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~--~~y~lAk~~~~~~~DaiFiSCT 188 (238) T COG3473 136 IEFLEANGFEIVDFKGLGITDNLEIGRQEPW--AVYRLAKEVFTPDADAIFISCT 188 (238) T ss_pred HHHHHHCCEEEEEEECCCCCCCCHHCCCCHH--HHHHHHHHHCCCCCCEEEEEEE T ss_conf 9999848927997541577665001146838--9999999856777776999700 No 23 >pfam01238 PMI_typeI Phosphomannose isomerase type I. This is a family of Phosphomannose isomerase type I enzymes (EC 5.3.1.8). Probab=27.27 E-value=14 Score=17.45 Aligned_cols=11 Identities=9% Similarity=0.060 Sum_probs=5.7 Q ss_pred CCCCCEEEECC Q ss_conf 58741411767 Q gi|254780973|r 198 FPDCCRLWDLS 208 (255) Q Consensus 198 tPDs~R~Wd~~ 208 (255) .|...=|-+.+ T Consensus 255 ~PGeAlfl~Ag 265 (373) T pfam01238 255 NPGEAMFLKAN 265 (373) T ss_pred CCCCEEEECCC T ss_conf 69877873699 No 24 >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane. Probab=25.09 E-value=31 Score=15.37 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=11.2 Q ss_pred EEEECCCCCCEEEEEECEEECC Q ss_conf 2310026553599992446010 Q gi|254780973|r 79 QLVRDVEMIPLLITVRNTAAGS 100 (255) Q Consensus 79 ~iv~k~~~iPiE~VvR~yaaGS 100 (255) |+=+--..|+=--|..|.+.|. T Consensus 93 MIFQ~yNLi~R~~VL~NVL~GR 114 (253) T TIGR02315 93 MIFQHYNLIERLTVLENVLHGR 114 (253) T ss_pred CEEHHHHCCCCCHHHHHHHHHH T ss_conf 0110102378303667642143 No 25 >cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro Probab=24.84 E-value=37 Score=14.90 Aligned_cols=66 Identities=11% Similarity=0.082 Sum_probs=37.2 Q ss_pred HHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEECCCCCCCCHHHHHCCHHHHHHHH Q ss_conf 9999999999999987976631206663104688887999963058741411767567044787612367799999 Q gi|254780973|r 154 LSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGY 229 (255) Q Consensus 154 ~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEItPDs~R~Wd~~~~e~lDKd~~R~~l~~v~~~Y 229 (255) .-.++-+.+..++.+.|+++.|+- ||-..-++ +++++||-= -+- .+.-..-.+++++|+.++..-+ T Consensus 122 ~~~~il~~~~~l~~~~glVHgDLS-EyNILv~~--~~~~iID~p--QaV-----~~~hp~A~e~L~RDi~ni~~fF 187 (190) T cd05145 122 LYEQVVEQMRRLYQEAGLVHGDLS-EYNILYHD--GKPYIIDVS--QAV-----ELDHPNALEFLRRDIRNINRFF 187 (190) T ss_pred HHHHHHHHHHHHHHHCCEEECCCC-HHHEEEEC--CCEEEEECC--CCC-----CCCCCCHHHHHHHHHHHHHHHH T ss_conf 999999999999997492103641-55338978--947999557--612-----5789988999999999999985 No 26 >PHA00012 assembly protein Probab=24.35 E-value=42 Score=14.54 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=8.0 Q ss_pred HHHHHHHHCCCCCEEE Q ss_conf 9999987339974057 Q gi|254780973|r 56 YMFTQLGKIGIPHYFI 71 (255) Q Consensus 56 ~~F~~l~~~Gi~th~i 71 (255) -||-+..+.|=...|+ T Consensus 109 dw~lHaRKlGWDv~fi 124 (361) T PHA00012 109 DWFLHARKLGWDIIFI 124 (361) T ss_pred HHHHHHHHCCCCEEEE T ss_conf 9999850048729999 No 27 >TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases; InterPro: IPR011828 This entry represents a group of archaeal decarboxylating dehydrogenases which include the leucine biosynthesis enzyme 3-isopropylmalate dehydrogenase (LeuB, LEU3) and the methanogenic cofactor CoB biosynthesis enzyme isohomocitrate dehydrogenase (AksF). Both of these have been characterised in Methanococcus janaschii . Sequences from the non-methanogenic archaea are also represented in this entry, presumably LeuB, although phylogenetic trees cannot establish which gene is which in the methanogens.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0051287 NAD binding, 0009098 leucine biosynthetic process. Probab=23.57 E-value=24 Score=16.11 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=10.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHC Q ss_conf 6888799999999999998733 Q gi|254780973|r 43 LNGKGVLNNRISEYMFTQLGKI 64 (255) Q Consensus 43 I~gKG~~l~~iS~~~F~~l~~~ 64 (255) |.-||. -+|..|-|++..+. T Consensus 156 iTr~gS--eRIa~~A~~lAk~r 175 (350) T TIGR02088 156 ITRKGS--ERIARFAFELAKKR 175 (350) T ss_pred ECHHHH--HHHHHHHHHHHHHH T ss_conf 024643--99999999999860 No 28 >TIGR00395 leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases.; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm. Probab=22.68 E-value=56 Score=13.75 Aligned_cols=158 Identities=12% Similarity=0.144 Sum_probs=83.4 Q ss_pred EEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-----CEEEECCCCCE----------E Q ss_conf 68728899799999368245162014556888799999999999998733997-----40574388400----------2 Q gi|254780973|r 15 IYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIP-----HYFIRRINMRE----------Q 79 (255) Q Consensus 15 iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~-----th~i~~~~~~~----------~ 79 (255) +|-.++.+.++...-+.-..-||+ ++-.-|.+. +|.--|+.|++.-.. --.+...++.. . T Consensus 310 ~wv~P~~~Yv~~~~~~e~etenGi---elienGiwi--~~~~A~~~L~yq~~~PkrGf~~~~~~v~g~~liG~~v~~Pq~ 384 (1109) T TIGR00395 310 VWVNPDITYVIAEVGGEKETENGI---ELIENGIWI--VSKEAVENLSYQKLKPKRGFLKVIEEVDGKQLIGKKVKNPQV 384 (1109) T ss_pred EEECCCCCEEEEEECCCCCHHHHH---HHHHCCHHH--HHHHHHHHCCCCCCCCCCCEEEEEEEECHHHHCCCEEECCCC T ss_conf 555577516899733740012004---455422577--789999604343458874227886530734241764457732 Q ss_pred EEECCCCCCEEEEEECEEECC-----------------------HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 310026553599992446010-----------------------100256433773786434443454456886415578 Q gi|254780973|r 80 LVRDVEMIPLLITVRNTAAGS-----------------------LAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEH 136 (255) Q Consensus 80 iv~k~~~iPiE~VvR~yaaGS-----------------------~~kry~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~ 136 (255) +-+++.++|.|+|--+++||- ++.+||+-+...-+.-++... +-|..++- -...- T Consensus 385 v~~e~pILPa~fV~~~~gTGvV~sVPahaP~Dyia~~DL~~d~E~l~~YGi~k~~v~di~~v~~i-~~~~yG~~-pA~~i 462 (1109) T TIGR00395 385 VGKEVPILPAEFVDTEKGTGVVMSVPAHAPADYIALEDLKRDEELLEKYGIIKDVVEDIEPVPLI-KVDGYGDL-PAKEI 462 (1109) T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHCCCCHHHHHCCCCEEEE-EECCCCCC-CHHHH T ss_conf 58977547701126788854788417887035899986077801455327732466414855676-30887775-48999 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHH-------------------------HHHHHHHHHCCCEEECCCEEEE Q ss_conf 88854089899978999999999-------------------------9999999987976631206663 Q gi|254780973|r 137 ITAFNWANQSEVEEMTALSIRIN-------------------------DFMTGLFLGINIQLVDFRIKCG 181 (255) Q Consensus 137 ~~~~~~~~~~~~~~i~~~a~~i~-------------------------~~l~~~~~~~Gl~LvD~K~EFG 181 (255) ++.+|+=|+++=+.+.+.+-.+| +.+++=.-+.| |+|.=+||. T Consensus 463 ve~~gi~sq~dk~~L~~Atk~~YK~ey~~Gvm~~~~~~Y~G~kV~eak~~v~~dL~~~G--lA~v~yEFs 530 (1109) T TIGR00395 463 VEELGIKSQKDKNLLEEATKELYKEEYHTGVMIENILDYKGMKVSEAKEKVKEDLIDKG--LADVMYEFS 530 (1109) T ss_pred HHHHCCCCCCCHHHHHHHHHHHCHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCC--CCEEECCCC T ss_conf 98828888772024788740022132150032047757886117999999999998537--860201657 No 29 >pfam10902 DUF2693 Protein of unknown function (DUF2693). This viral family of proteins has no known function. Probab=21.62 E-value=42 Score=14.51 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=8.8 Q ss_pred CCCCCEEEECCCC Q ss_conf 5874141176756 Q gi|254780973|r 198 FPDCCRLWDLSKK 210 (255) Q Consensus 198 tPDs~R~Wd~~~~ 210 (255) .++|||.||.+.+ T Consensus 47 n~e~~~V~Dve~~ 59 (83) T pfam10902 47 SKESVRVYDVELK 59 (83) T ss_pred CCCEEEEEECCCC T ss_conf 8766789973569 No 30 >cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H Probab=21.00 E-value=61 Score=13.54 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=30.4 Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEE Q ss_conf 5408989997899999999999999999879766312066 Q gi|254780973|r 140 FNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIK 179 (255) Q Consensus 140 ~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~E 179 (255) .++..-+......+++-.+.+.+...+.+.|+.|+++-+| T Consensus 152 ~~~~~~~~~~~~~els~~i~~~l~~~~~~~Glel~~f~I~ 191 (207) T cd03408 152 SGLAVMLLAANRDELSKAVREALAPWFASFGLELVSVYIE 191 (207) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE T ss_conf 2852526789999999999999999999659188888897 No 31 >COG2000 Predicted Fe-S protein [General function prediction only] Probab=20.20 E-value=63 Score=13.43 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=22.1 Q ss_pred CCC--CCEE--EECCCCCCCCH-HHHHC-CHHHHHHHHHHHHHHH Q ss_conf 587--4141--17675670447-87612-3677999999999971 Q gi|254780973|r 198 FPD--CCRL--WDLSKKEECDK-KRFSK-SNDQLLEGYSEVARRL 236 (255) Q Consensus 198 tPD--s~R~--Wd~~~~e~lDK-d~~R~-~l~~v~~~Y~ev~~rl 236 (255) +|| |||= ++..+.+ +.| |++|+ -+|-.+..|.+|+++- T Consensus 92 lPne~scre~lf~~~~~~-lekgdiiRyRp~Gcpi~hfaeIld~~ 135 (226) T COG2000 92 LPNECSCREILFPFKSKE-LEKGDIIRYRPLGCPITHFAEILDEA 135 (226) T ss_pred CCCCCCCCEEEEEECCCC-CCCCCEEEECCCCCCCHHHHHHHHHH T ss_conf 999654100688603200-01363797034788622079999861 Done!