Query         gi|254780973|ref|YP_003065386.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 255
No_of_seqs    142 out of 1715
Neff          6.1 
Searched_HMMs 39220
Date          Mon May 30 02:18:34 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780973.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK09362 phosphoribosylaminoim 100.0       0       0  606.1  25.7  236    1-239     1-236 (238)
  2 cd01415 SAICAR_synt_PurC bacte 100.0       0       0  597.2  24.1  229    6-237     1-229 (230)
  3 cd01416 SAICAR_synt_Ade5 Ade5_ 100.0       0       0  564.2  24.5  235    1-237     1-251 (252)
  4 cd00476 SAICAR_synt 5-aminoimi 100.0       0       0  563.0  22.6  228    6-237     1-230 (230)
  5 COG0152 PurC Phosphoribosylami 100.0       0       0  562.7  20.6  240    1-243     1-241 (247)
  6 pfam01259 SAICAR_synt SAICAR s 100.0       0       0  553.2  19.2  232    3-237     1-240 (243)
  7 TIGR00081 purC phosphoribosyla 100.0       0       0  542.8  19.5  236    3-241    25-373 (374)
  8 PRK12607 phosphoribosylaminoim 100.0       0       0  526.9  21.1  229    2-236    10-287 (295)
  9 cd01414 SAICAR_synt_Sc non-met 100.0       0       0  522.8  22.2  211    6-223     1-244 (279)
 10 PRK13961 phosphoribosylaminoim 100.0       0       0  509.9  21.5  228    3-237    12-292 (297)
 11 PRK13959 phosphoribosylaminoim 100.0       0       0  455.3  22.9  209    9-223     1-267 (335)
 12 PRK13960 phosphoribosylaminoim 100.0       0       0  428.9  20.3  247    4-250    19-354 (367)
 13 TIGR02735 purC_vibrio phosphor 100.0       0       0  321.4  11.9  235    3-237    17-340 (365)
 14 KOG2835 consensus              100.0 1.4E-32 3.5E-37  224.9   2.5  230    4-235    12-254 (373)
 15 KOG2835 consensus               99.4 7.6E-14 1.9E-18  107.2   2.0  163   57-222    87-290 (373)
 16 PRK13961 phosphoribosylaminoim  88.2    0.39 9.9E-06   27.3   2.5  129  110-253   129-278 (297)
 17 PRK12607 phosphoribosylaminoim  85.0    0.25 6.5E-06   28.5   0.2  125   87-220    80-234 (295)
 18 TIGR00421 ubiX_pad polyprenyl   49.7     7.9  0.0002   19.1   1.2   85   47-131     8-160 (181)
 19 TIGR01553 formate-DH-alph form  36.8      17 0.00043   17.0   1.2   41   90-130   851-894 (1043)
 20 KOG2646 consensus               34.7      35 0.00088   15.1   3.7   69  107-184   276-347 (396)
 21 pfam10866 DUF2704 Protein of u  33.7      14 0.00036   17.5   0.4   66  103-173    21-86  (169)
 22 COG3473 Maleate cis-trans isom  31.9      12 0.00032   17.9  -0.1  115   85-209    64-188 (238)
 23 pfam01238 PMI_typeI Phosphoman  27.3      14 0.00037   17.5  -0.4   11  198-208   255-265 (373)
 24 TIGR02315 ABC_phnC phosphonate  25.1      31 0.00079   15.4   0.9   22   79-100    93-114 (253)
 25 cd05145 RIO1_like RIO kinase f  24.8      37 0.00094   14.9   1.3   66  154-229   122-187 (190)
 26 PHA00012 assembly protein       24.4      42  0.0011   14.5   1.5   16   56-71    109-124 (361)
 27 TIGR02088 LEU3_arch isopropylm  23.6      24  0.0006   16.1   0.1   20   43-64    156-175 (350)
 28 TIGR00395 leuS_arch leucyl-tRN  22.7      56  0.0014   13.7   3.5  158   15-181   310-530 (1109)
 29 pfam10902 DUF2693 Protein of u  21.6      42  0.0011   14.5   1.1   13  198-210    47-59  (83)
 30 cd03408 Band_7_5 A subgroup of  21.0      61  0.0015   13.5   5.5   40  140-179   152-191 (207)
 31 COG2000 Predicted Fe-S protein  20.2      63  0.0016   13.4   3.3   38  198-236    92-135 (226)

No 1  
>PRK09362 phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed
Probab=100.00  E-value=0  Score=606.09  Aligned_cols=236  Identities=48%  Similarity=0.834  Sum_probs=231.7

Q ss_pred             CCCCCEEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEE
Q ss_conf             99877636133037687288997999993682451620145568887999999999999987339974057438840023
Q gi|254780973|r    1 MRPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQL   80 (255)
Q Consensus         1 m~~~~~lyeGKvK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~~~~~i   80 (255)
                      |+++++||+||||+||+++|++.|+++||||+||||+++++.|||||++||+||+|||++|+++||||||++.+++|+|+
T Consensus         1 m~~~~lly~GKvk~vY~~~d~~~li~~~~DriSAfD~~~~~~IpgKG~~l~~iS~~~F~~l~~~GI~tH~i~~~~~~~m~   80 (238)
T PRK09362          1 MEKKELLYEGKAKIVYSTDDPDLLILEFKDDATAFNGEKKEQIDGKGVLNNQISAFIFKKLEEAGIPTHFIEKLSDREQL   80 (238)
T ss_pred             CCCCCEEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEE
T ss_conf             98676366416747888599999999996882520755578899766999999999999874679980554147983599


Q ss_pred             EECCCCCCEEEEEECEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             10026553599992446010100256433773786434443454456886415578888540898999789999999999
Q gi|254780973|r   81 VRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRIND  160 (255)
Q Consensus        81 v~k~~~iPiE~VvR~yaaGS~~kry~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~  160 (255)
                      |+||+|||+|||||||||||+|+|||+++|++|++|++||++|+|++|||++|++++.++|+++++++++|+++|+++|+
T Consensus        81 vkk~~~iPiE~VvR~y~~GS~~~r~g~~eg~~l~~Pi~e~~~K~d~~~Dp~i~~~~~~~~~~~~~~~~~~i~~~al~i~~  160 (238)
T PRK09362         81 VKKVEIIPLEVVVRNVAAGSLVKRLGIEEGTVLPPPIVEFYYKNDALGDPMINEDHILALGWATPEELAEIKELALKIND  160 (238)
T ss_pred             EEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCEEECEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             99702450899995257504401258644767898712023356667899759999998502899999999999999999


Q ss_pred             HHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCC
Q ss_conf             9999999879766312066631046888879999630587414117675670447876123677999999999971423
Q gi|254780973|r  161 FMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYSEVARRLGIF  239 (255)
Q Consensus       161 ~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEItPDs~R~Wd~~~~e~lDKd~~R~~l~~v~~~Y~ev~~rl~~~  239 (255)
                      +++++|.++|++|||||||||++.+|   +|+|+||||||||||||++++++||||+||+++|+++++|+||++||+..
T Consensus       161 ~~~~~~~~~GliLvD~K~EFG~~~~g---~i~L~DEiTPDs~R~W~~~~~~~lDK~~~R~~l~~~~~~Y~~v~~r~~~~  236 (238)
T PRK09362        161 VLKGLFAGIGIRLVDFKLEFGRDFDG---EIVLADEISPDTCRLWDKETNEKLDKDRFRRDLGGVIEAYEEVLKRLGEL  236 (238)
T ss_pred             HHHHHHHHCCCEEEEEEEEEEECCCC---CEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf             99999997898899987998785999---89999855798530351888762466988603453889999999987343


No 2  
>cd01415 SAICAR_synt_PurC bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. A subfamily of SAICAR synthetases represented by the Thermotoga maritima (Tm) enzyme and E. coli PurC. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=100.00  E-value=0  Score=597.25  Aligned_cols=229  Identities=47%  Similarity=0.752  Sum_probs=225.2

Q ss_pred             EEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCC
Q ss_conf             63613303768728899799999368245162014556888799999999999998733997405743884002310026
Q gi|254780973|r    6 PVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQLVRDVE   85 (255)
Q Consensus         6 ~lyeGKvK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~~~~~iv~k~~   85 (255)
                      +||+||||+||+++|++.|+|+||||+||||+++++.|||||++||+||+|||++|+++||||||++.+++|+|+|+||+
T Consensus         1 Liy~GKvk~iY~~~d~~~li~~~tDriSAfD~~~~~~Ip~KG~il~~iS~~~F~~l~~~gI~tH~i~~~~~~~~~vkk~~   80 (230)
T cd01415           1 LLYEGKAKIVYATDDPDVLIVEFKDDATAFNGKKKDTIEGKGVLNNEISALIFKYLEENGIKTHFIEKLSDREQLVKKVE   80 (230)
T ss_pred             CCCCCCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEEE
T ss_conf             96564542789859999999999688152076557889977699999999999988767998202315898559998701


Q ss_pred             CCCEEEEEECEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55359999244601010025643377378643444345445688641557888854089899978999999999999999
Q gi|254780973|r   86 MIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGL  165 (255)
Q Consensus        86 ~iPiE~VvR~yaaGS~~kry~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~~l~~~  165 (255)
                      |||+|||||||||||+|+|||+++|++|++|++||++|+|++|||++|++++.++|+++++++++|+++|+++|++++++
T Consensus        81 ~iPiE~VvR~y~tGS~~kryg~~eg~~l~~Pi~e~~~K~d~~~Dp~i~~~~~~~~~~~~~~~~~~i~~~al~i~~~~~~~  160 (230)
T cd01415          81 IIPLEVVVRNIAAGSLVKRLGIEEGTVLDPPIVEFYYKNDELGDPLINEDHILALGLATEEELKEIKELALKINEVLSEF  160 (230)
T ss_pred             EEEEEEEEEEEEEEEEEEECCCCCCCCCCCCEECCEECCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             45089999767511225324866667999861012321666789865999999850289999999999999999999999


Q ss_pred             HHHCCCEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf             998797663120666310468888799996305874141176756704478761236779999999999714
Q gi|254780973|r  166 FLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYSEVARRLG  237 (255)
Q Consensus       166 ~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEItPDs~R~Wd~~~~e~lDKd~~R~~l~~v~~~Y~ev~~rl~  237 (255)
                      |.++|++|||||||||++.+   |+|+|+||||||||||||++++++||||+||+++|+++++|+||++||+
T Consensus       161 ~~~~GliLvD~K~EFG~~~~---g~i~L~DEitPDssR~W~~~~~~~~DKq~~R~~~~~~~~~Y~~v~~r~~  229 (230)
T cd01415         161 FAEIGIILVDFKLEFGRDKD---GEIVLADEISPDTCRLWDKETGEKLDKDRFRRDLGDVIEAYEEVLKRLG  229 (230)
T ss_pred             HHHCCCEEEEEEEEEEECCC---CCEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf             99789889998799878699---9599998567974203508987534729886355637799999999745


No 3  
>cd01416 SAICAR_synt_Ade5 Ade5_like 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic group of SAICAR synthetases represented by the Drosophila melanogaster, N-terminal, SAICAR synthetase domain of bifunctional Ade5. The Ade5 gene product (CAIR-SAICARs) catalyzes the sixth and seventh steps of the de novo biosynthesis of purine nucleotides (also reported as seventh and eighth steps). SAICAR synthetase converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=100.00  E-value=0  Score=564.22  Aligned_cols=235  Identities=29%  Similarity=0.419  Sum_probs=223.1

Q ss_pred             CCCCCEEEECCCEEEEECC-CCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEE
Q ss_conf             9987763613303768728-899799999368245162014556888799999999999998733997405743884002
Q gi|254780973|r    1 MRPRNPVYEEKTKIIYEGL-EPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQ   79 (255)
Q Consensus         1 m~~~~~lyeGKvK~iY~~~-d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~~~~~   79 (255)
                      |++.++||+||||+||+++ +++.++++||||+||||+++++.|||||++||+||+|||++|+++||||||++.+++++|
T Consensus         1 m~~~k~ly~GKvk~vY~~~d~~~~lli~~tDriSAfD~~~~~~IpgKG~~l~~iS~~~F~~l~~~gI~tH~i~~~~~~~~   80 (252)
T cd01416           1 LKLGKKLIEGKTKIVYELPDQPGLVLIQSKDRITAGDGARKDEIEGKAAISNKTTSNVFELLQEAGIKTHFVKQCSPTAF   80 (252)
T ss_pred             CCCCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCEE
T ss_conf             98888433145758864589998899999789723276057888978699999999999886207998012168998047


Q ss_pred             EEECCCCCCEEEEEECEEECCHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH------CCHHHHHHHH
Q ss_conf             31002655359999244601010025-6433773786434443454456886415578888540------8989997899
Q gi|254780973|r   80 LVRDVEMIPLLITVRNTAAGSLAKRL-NIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNW------ANQSEVEEMT  152 (255)
Q Consensus        80 iv~k~~~iPiE~VvR~yaaGS~~kry-~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~------~~~~~~~~i~  152 (255)
                      +|+||+|||+|||||||||||+|+|| |+.+|++|++|++|+++|+|++|||++|++++.++|+      +|++++++|+
T Consensus        81 lvkk~~~iPiE~VVR~ya~GS~~kr~~g~~eg~~l~~pl~e~~~K~d~~~Dp~it~~~i~~~~~~~~~~~~~~~~~~~i~  160 (252)
T cd01416          81 IARKCEMIPIEWVCRRIATGSFLKRNPGVKEGYRFSPPKLEFFYKDDANHDPQWSEEQLLEAKLNCGGLKIGKKEVDIMT  160 (252)
T ss_pred             EEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             77614630579999620344412136898774628976344424665678998899999867853013448999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEECCCC-CCCCHHHHHCC-------HHH
Q ss_conf             9999999999999998797663120666310468888799996305874141176756-70447876123-------677
Q gi|254780973|r  153 ALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDLSKK-EECDKKRFSKS-------NDQ  224 (255)
Q Consensus       153 ~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEItPDs~R~Wd~~~~-e~lDKd~~R~~-------l~~  224 (255)
                      ++|+++|++++++|.++|++|||||||||++.++  |+|+|+||||||||||||.++. ++||||+||++       +++
T Consensus       161 ~~al~i~~~l~~~~~~~GiiLvDtK~EFG~d~~~--g~ivl~D~itPDSsR~W~~~~~~~~~DK~~~Rd~~~~~~~~~~~  238 (252)
T cd01416         161 KSTIAIFEILEKAWATQDCTLVDMKIEFGVDVTT--GEILLADVIDNDSWRLWPSGDKRLMKDKQVYRNLKEVTDEALQE  238 (252)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCC--CEEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHH
T ss_conf             9999999999999997898899617886464789--97999980079864416489977164444100676442999999


Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             9999999999714
Q gi|254780973|r  225 LLEGYSEVARRLG  237 (255)
Q Consensus       225 v~~~Y~ev~~rl~  237 (255)
                      |.++|+||++||+
T Consensus       239 v~~~~~~v~~rl~  251 (252)
T cd01416         239 VKKNYEWVADKLE  251 (252)
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999999866


No 4  
>cd00476 SAICAR_synt 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. SAICAR synthetase (the PurC gene product) catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=100.00  E-value=0  Score=563.03  Aligned_cols=228  Identities=36%  Similarity=0.588  Sum_probs=220.4

Q ss_pred             EEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCC
Q ss_conf             63613303768728899799999368245162014556888799999999999998733997405743884002310026
Q gi|254780973|r    6 PVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQLVRDVE   85 (255)
Q Consensus         6 ~lyeGKvK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~~~~~iv~k~~   85 (255)
                      .||+||||+||++++ +.++++||||+||||+++++.|||||++||+||+|||++|+++||||||++.++|++|+|++|+
T Consensus         1 ~lY~GK~K~vy~~~~-~~ll~~~~DriSafD~~~~~~i~gKG~~~~~iS~~~F~~l~~~GI~tH~i~~~~~~~~~vkk~~   79 (230)
T cd00476           1 TLYRGKTKIVYETKD-GVLLLEFKDDISAGDGARRNFLDEKGDITAKLTLFIFKYLSEAGIPTHFVERLGPRTLLVDKLK   79 (230)
T ss_pred             CCCCCCCEEEEECCC-CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEECC
T ss_conf             953023527897699-9899999798514276367889987899999999999986216997356436999479999887


Q ss_pred             CCCEEEEEECEEECCHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55359999244601010025-64337737864344434544568864155788885408989997899999999999999
Q gi|254780973|r   86 MIPLLITVRNTAAGSLAKRL-NIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTG  164 (255)
Q Consensus        86 ~iPiE~VvR~yaaGS~~kry-~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~~l~~  164 (255)
                      |||+|||||||||||+|+|| |+++|++|++|++||++|+|++|||++|++++.++|+++++++++|+++|+++|+++++
T Consensus        80 ~iplEvVvR~ya~GS~~rry~g~~eg~~l~~Pi~e~~~K~d~~~Dp~i~~~~~~~~~~~~~~e~~~i~~~al~v~~~l~~  159 (230)
T cd00476          80 XIPLEVVVRNRATGSFVKRYGGFKEGREFPPPLVEFFYKDDAEHDPIVSEDQLERLGFIGKVDVERXKELAVKINTVLKK  159 (230)
T ss_pred             EEEEEEEEEEEECCCHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             64579999711202057661787577618986678773378789998899999985689999999999999999999999


Q ss_pred             HHHHCCCEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEECCCCCCC-CHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf             9998797663120666310468888799996305874141176756704-478761236779999999999714
Q gi|254780973|r  165 LFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDLSKKEEC-DKKRFSKSNDQLLEGYSEVARRLG  237 (255)
Q Consensus       165 ~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEItPDs~R~Wd~~~~e~l-DKd~~R~~l~~v~~~Y~ev~~rl~  237 (255)
                      +|.++|++|||||||||++.+   |+|+|+||||||||||||+++++.. ||++||++||+++++|+||++||.
T Consensus       160 ~~~~~Gl~LVD~K~EFG~~~~---G~ivL~DEisPDs~R~Wd~~~~~~~kd~~r~~~~l~~~~~~Y~ev~~rl~  230 (230)
T cd00476         160 LFSPAGLELWDFKLEFGLDEE---GEIVLGDEISPDSSRLWRKGGEPYDKDLFRRRASLGQIIEKYEEVAELVR  230 (230)
T ss_pred             HHHHCCCEEEEEEEEEEECCC---CCEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             999789989998899878799---98999997089864332289860001034302651769999999999759


No 5  
>COG0152 PurC Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase [Nucleotide transport and metabolism]
Probab=100.00  E-value=0  Score=562.72  Aligned_cols=240  Identities=43%  Similarity=0.636  Sum_probs=232.1

Q ss_pred             CCCCCEEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEE
Q ss_conf             99877636133037687288997999993682451620145568887999999999999987339974057438840023
Q gi|254780973|r    1 MRPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQL   80 (255)
Q Consensus         1 m~~~~~lyeGKvK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~~~~~i   80 (255)
                      |.+..+||+||||++|+++|++.|+|+||||+||||++++++|||||++||+||+|||++|+++||||||++.+++++|+
T Consensus         1 ~~~~~~ly~GKaK~vY~~~d~~~li~~f~D~~sAfdg~~~~~i~gKG~~n~~iS~~~F~~L~~~gi~tH~i~~~~~~~~l   80 (247)
T COG0152           1 MEKLRLLYEGKAKDLYETDDPDLLIMEFSDRASAFDGEKKDQIPGKGALNNQISAFIFEKLEEAGIPTHFIELLSDREQL   80 (247)
T ss_pred             CCCCCCCCCCCCCEEEECCCCCEEEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEE
T ss_conf             97643110443312367599888999995463202532156678706999999999999998749973053116997488


Q ss_pred             EECCCCCCEEEEEECEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             10026553599992446010100256433773786434443454456886415578888540898999789999999999
Q gi|254780973|r   81 VRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRIND  160 (255)
Q Consensus        81 v~k~~~iPiE~VvR~yaaGS~~kry~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~  160 (255)
                      |++++|||+|||||||+|||+||||+.++|+.|+.||+||++|+|+++||++|.+++..+++++.+++++|+++|+++|+
T Consensus        81 vkk~~iiPlEvVvRn~~aGS~~kr~~~~eg~~~~~~l~e~~~k~d~l~dPiv~d~~i~~~~~~~~ee~~~i~~~alkin~  160 (247)
T COG0152          81 VKKLEIIPLEVVVRNYAAGSLLKRYGIEEGTVLGIPLVEFLYKNDELPDPIVTDEHISALGIATPEEIEEIKELALKINE  160 (247)
T ss_pred             EEEEEEEEEEEEEECEECCHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHCCHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             88624875899995300224677616666618898874100151004997204513452034899999999999999999


Q ss_pred             HHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEECCCCCC-CCHHHHHCCHHHHHHHHHHHHHHHCCC
Q ss_conf             9999999879766312066631046888879999630587414117675670-447876123677999999999971423
Q gi|254780973|r  161 FMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDLSKKEE-CDKKRFSKSNDQLLEGYSEVARRLGIF  239 (255)
Q Consensus       161 ~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEItPDs~R~Wd~~~~e~-lDKd~~R~~l~~v~~~Y~ev~~rl~~~  239 (255)
                      +++++|.++|++|||||||||++.+   |+|+|+||||||||||||++++++ ||||+||+++|++.+.|+||++|+...
T Consensus       161 ~l~~~~~~~GiilvD~KlEFG~d~~---g~iiLaDEisPDs~R~Wd~~t~~~~~DKd~~R~~~g~~~~~y~ev~~r~~~~  237 (247)
T COG0152         161 VLKDLFAKRGIILVDFKLEFGLDED---GEIVLADEISPDSCRLWDAETYEKSLDKDFFRRDLGDLPELYEEVLERLSDL  237 (247)
T ss_pred             HHHHHHHHCCCEEEEEEEEEEECCC---CCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             9999998589679766688667599---9889984337975446646546431246787513798540499999999999


Q ss_pred             CCCC
Q ss_conf             2368
Q gi|254780973|r  240 KKNE  243 (255)
Q Consensus       240 ~~~~  243 (255)
                      ....
T Consensus       238 ~~~~  241 (247)
T COG0152         238 YEEA  241 (247)
T ss_pred             HHHH
T ss_conf             9988


No 6  
>pfam01259 SAICAR_synt SAICAR synthetase. Also known as Phosphoribosylaminoimidazole-succinocarboxamide synthase.
Probab=100.00  E-value=0  Score=553.18  Aligned_cols=232  Identities=32%  Similarity=0.451  Sum_probs=222.7

Q ss_pred             CCCEEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEE
Q ss_conf             87763613303768728899799999368245162014556888799999999999998733997405743884002310
Q gi|254780973|r    3 PRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQLVR   82 (255)
Q Consensus         3 ~~~~lyeGKvK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~~~~~iv~   82 (255)
                      |+++||+||||+||+++|++.|+|+||||+||||+++++.|||||++||+||+|||++|+++||||||++.+++++|+|+
T Consensus         1 kl~lly~GKvK~vy~~~d~~~ll~~f~DriSafD~~~~~~IpgKG~~l~~iS~~~F~~l~~~GI~tH~i~~~~~~~~~vk   80 (243)
T pfam01259         1 KLPLLARGKVKDIYETDDENTLLMVAKDRISAFDGIRKNQIPGKGRILNKTSSFWFEFLQEAGIPNHFVESLSETELLVK   80 (243)
T ss_pred             CCCCEECCCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEE
T ss_conf             98312213674889859999999999798672186057899977799999999999988665983655068999618887


Q ss_pred             CCCCCCEEEEEECEEECCHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH------CCHHHHHHHHHHH
Q ss_conf             02655359999244601010025-6433773786434443454456886415578888540------8989997899999
Q gi|254780973|r   83 DVEMIPLLITVRNTAAGSLAKRL-NIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNW------ANQSEVEEMTALS  155 (255)
Q Consensus        83 k~~~iPiE~VvR~yaaGS~~kry-~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~------~~~~~~~~i~~~a  155 (255)
                      ||+|||||||||||||||+|+|| +..+|..|++|++|+++|+|+++||+++.+|...+++      ++.+++++|+++|
T Consensus        81 k~~~iPlEvIvR~y~~GS~~~ry~g~~~G~~l~~~l~e~~~k~d~~~dP~~k~e~d~~l~~~~~~~~~~~ee~~~i~~~a  160 (243)
T pfam01259        81 KLKMIPIEVVVRGYATGSFLKRYTGVVEGIKLPPGLVESFYKPDAIFDPSTKAEHDENISFAQAELLVGKEEADRMKEKT  160 (243)
T ss_pred             EECCCCEEEEEEEEEECHHEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHCCHHHHHHHHHHH
T ss_conf             40256569999868712110231797368748954466542652236884689999858985754215999999999999


Q ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEECCCCC-CCCHHHHHCCHHHHHHHHHHHHH
Q ss_conf             99999999999987976631206663104688887999963058741411767567-04478761236779999999999
Q gi|254780973|r  156 IRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDLSKKE-ECDKKRFSKSNDQLLEGYSEVAR  234 (255)
Q Consensus       156 ~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEItPDs~R~Wd~~~~e-~lDKd~~R~~l~~v~~~Y~ev~~  234 (255)
                      +++|++++++|.++|++|||||+|||++.+   |+|+||||||||||||||+++++ +||||+||+||+++.++|++++.
T Consensus       161 l~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~---g~ivL~DEI~PDs~R~Wd~~~~~~~lDK~~~R~~l~~~~~~y~~v~~  237 (243)
T pfam01259       161 LALYEKLKKYAADKGIILVDTKFEFGLDKD---GEILLADEISPDSSRLWDADTYEKQYDKQFLRDWLGSNGEAYEEVGP  237 (243)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEEEEEECCC---CCEEEEEEECCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCC
T ss_conf             999999999999789889997789867699---95999986679744331688886046829887240046606674665


Q ss_pred             HHC
Q ss_conf             714
Q gi|254780973|r  235 RLG  237 (255)
Q Consensus       235 rl~  237 (255)
                      ||.
T Consensus       238 ~l~  240 (243)
T pfam01259       238 KLP  240 (243)
T ss_pred             CCC
T ss_conf             587


No 7  
>TIGR00081 purC phosphoribosylaminoimidazole-succinocarboxamide synthase; InterPro: IPR001636   Phosphoribosylaminoimidazole-succinocarboxamide synthase (6.3.2.6 from EC) (SAICAR synthetase) catalyzes the seventh step in the de novo purine biosynthetic pathway; the ATP-dependent conversion of 5'-phosphoribosyl-5-aminoimidazole-4-carboxylic acid and aspartic acid to SAICAR .   In bacteria (purC), fungi (ADE1) and plants (Pur7), SAICAR synthetase is a monofunctional protein; in animals it is the N-terminal domain of a bifunctional enzyme that also catalyse phosphoribosylaminoimidazole carboxylase (AIRC) activity (see ). ; GO: 0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity, 0006164 purine nucleotide biosynthetic process.
Probab=100.00  E-value=0  Score=542.80  Aligned_cols=236  Identities=38%  Similarity=0.655  Sum_probs=227.3

Q ss_pred             CCCEEEECCCEEEE----ECCCCCEEEEEEECCCEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHH---------------
Q ss_conf             87763613303768----72889979999936824516-20145568887999999999999987---------------
Q gi|254780973|r    3 PRNPVYEEKTKIIY----EGLEPGTLIQFFKDDNLLEN-NPRCATLNGKGVLNNRISEYMFTQLG---------------   62 (255)
Q Consensus         3 ~~~~lyeGKvK~iY----~~~d~~~li~~~~DriSAfD-~~~~~~I~gKG~~l~~iS~~~F~~l~---------------   62 (255)
                      |.++||+||||+||    .++||+.|.++|+||+|||| |++++.|++||.+||.||++||++|+               
T Consensus        25 k~~~lY~GKaK~~YvLke~~dd~~~L~~~f~D~~sAfdYg~~~d~i~~KG~~n~~iS~~~F~~L~~~~~NHl~diaPG~~  104 (374)
T TIGR00081        25 KKKLLYSGKAKDLYVLKEETDDPDLLVFVFRDDISAFDYGEKKDQIEGKGRLNTKISAFIFEKLENIVRNHLVDIAPGDS  104 (374)
T ss_pred             CCCCCEECCCEEEEEEECCCCCCCEEEEEEEECCCEECCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCE
T ss_conf             46651003411798850511379778999830531212131368620346899999999999876521444244078872


Q ss_pred             ------HCCCCCEEEECCCCCEEEEECCC----------------------------------CCCEEEEEECEEEC--C
Q ss_conf             ------33997405743884002310026----------------------------------55359999244601--0
Q gi|254780973|r   63 ------KIGIPHYFIRRINMREQLVRDVE----------------------------------MIPLLITVRNTAAG--S  100 (255)
Q Consensus        63 ------~~Gi~th~i~~~~~~~~iv~k~~----------------------------------~iPiE~VvR~yaaG--S  100 (255)
                            ++||||||++.+.++.|+|||++                                  ||||||||||||||  |
T Consensus       105 ~yD~lPe~Gi~t~y~~~~~~~~~Lvkk~~evenavnemevkLvRvikPknGDYsiFktLkGnF~iPlEvivRN~~aGGsS  184 (374)
T TIGR00081       105 VYDVLPEAGIPTHYIELIEDREMLVKKLDEVENAVNEMEVKLVRVIKPKNGDYSIFKTLKGNFLIPLEVIVRNIAAGGSS  184 (374)
T ss_pred             EECCHHHCCCCHHHHHCCCCCEEEEEECHHHHHHHHHEEEEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCC
T ss_conf             00000101786267523689708998200244224100257899973678871111001577310389996362368842


Q ss_pred             HHCC------------CCCCCCC-CCCCCCCCCCCCC---CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1002------------5643377-3786434443454---4568864155788885408989997899999999999999
Q gi|254780973|r  101 LAKR------------LNIPEGL-SLPRSLVEFYYLP---DSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTG  164 (255)
Q Consensus       101 ~~kr------------y~~~~G~-~l~~pl~e~~~K~---d~~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~~l~~  164 (255)
                      +|||            ++++||. .|++||+||++|+   |+.|||++|.+++.+++++|+++++.|+++|++||+.+++
T Consensus       185 ~~kry~~tgt~~gDFGl~~~EG~~EL~~pl~e~~~K~S~Kde~GDp~ln~s~a~~~~~~~~e~~~~~Kela~~~n~~l~~  264 (374)
T TIGR00081       185 LLKRYERTGTVPGDFGLGLPEGLVELEQPLVEFIFKDSSKDEVGDPMLNESYAEALGLATEEELERIKELALKVNEVLKR  264 (374)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             00331037831166788833241232776654323888778848898887799882367888999999999999899999


Q ss_pred             HHHHCCCEEECCCEEEEECCCCCCCEEE-EEEEE-CCCCCEEEECCCCC-------------------------------
Q ss_conf             9998797663120666310468888799-99630-58741411767567-------------------------------
Q gi|254780973|r  165 LFLGINIQLVDFRIKCGRLLDDDILRIV-LADEI-FPDCCRLWDLSKKE-------------------------------  211 (255)
Q Consensus       165 ~~~~~Gl~LvD~K~EFG~~~~~~~g~ii-L~DEI-tPDs~R~Wd~~~~e-------------------------------  211 (255)
                      +|.++||||+|||||||+|.+   |+++ |+||| |||||||||.++++                               
T Consensus       265 ~~~~~GiIl~DfKlEfG~D~~---G~~~iL~DEvlsPD~cRlWd~~t~~~~~~~~sydkqfeWYDkvRdwl~~~gw~~v~  341 (374)
T TIGR00081       265 LFDEKGIILVDFKLEFGLDEE---GNLIILADEVLSPDTCRLWDKETYESGELLRSYDKQFEWYDKVRDWLEQEGWEAVG  341 (374)
T ss_pred             HHHHCCCEECCCCEEEEECCC---CEEEEEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             997189571054246620378---52899974434888521361234321157611222212678888775305523486


Q ss_pred             --CCCHHHHHCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             --044787612367799999999997142323
Q gi|254780973|r  212 --ECDKKRFSKSNDQLLEGYSEVARRLGIFKK  241 (255)
Q Consensus       212 --~lDKd~~R~~l~~v~~~Y~ev~~rl~~~~~  241 (255)
                        ++|||+||++++++++||+.|++|++...+
T Consensus       342 ~pkldkD~frr~~~~~~~AY~~v~~r~~~~~~  373 (374)
T TIGR00081       342 LPKLDKDIFRRTLGKLIEAYETVAKRLGSQDD  373 (374)
T ss_pred             CCCCCCCCEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf             46667021674777899999999853322105


No 8  
>PRK12607 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=100.00  E-value=0  Score=526.87  Aligned_cols=229  Identities=21%  Similarity=0.224  Sum_probs=210.8

Q ss_pred             CCCCEEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEE
Q ss_conf             98776361330376872889979999936824516201455688879999999999999873399740574388400231
Q gi|254780973|r    2 RPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQLV   81 (255)
Q Consensus         2 ~~~~~lyeGKvK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~~~~~iv   81 (255)
                      ...+++|+||||+||+++| +.++|+||||+||||++++ +|||||++||+||+|||++|+++ |||||++.++++.|+|
T Consensus        10 ~~l~~iy~GKvrdvY~~~d-~~ll~v~tDriSAFD~v~~-~IpgKG~vl~~iS~~wF~~l~~~-i~nH~i~~~~~~~~lv   86 (295)
T PRK12607         10 PELPNYYRGKVRDNYDLPD-GRRILITTDRISAFDVVLA-TIPFKGQVLTQTARYWFEATKDI-CPNHVISYPDPNVVLG   86 (295)
T ss_pred             CCCCCCCCCCCCEEEECCC-CEEEEEEECCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCHHHEE
T ss_conf             9985002666835787499-9399999588546542268-99976799999999999972074-8704751577312201


Q ss_pred             ECCCCCCEEEEEECEEECCHHCCC------------------CCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHH
Q ss_conf             002655359999244601010025------------------643377378643444345445-6886415578888540
Q gi|254780973|r   82 RDVEMIPLLITVRNTAAGSLAKRL------------------NIPEGLSLPRSLVEFYYLPDS-SEKTLVSEEHITAFNW  142 (255)
Q Consensus        82 ~k~~~iPiE~VvR~yaaGS~~kry------------------~~~~G~~l~~pl~e~~~K~d~-~~DP~i~~~~~~~~~~  142 (255)
                      +||+|||||||||||+|||+|++|                  |+.+|++|++|++++++|++. .|||.|+.+++.+.++
T Consensus        87 kk~~~iPiE~VvRgy~aGS~~k~y~~~y~~g~~~~~g~~lp~gl~~~~~Lp~PiftpstK~d~~~hD~~Is~~~i~~~~l  166 (295)
T PRK12607         87 RRLTVLPVECVVRGYLAGSTWTSILTLYKAGERTMYGERLPDGLRENQKLPPPIFTPTTKAFEGGHDEPLTIAEIVARGL  166 (295)
T ss_pred             EECEEEEEEEEECCCEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCC
T ss_conf             00216645777527100211688887750477531265566544467668887455663033347887777789998658


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEEE-CCCCCEEEECCCC----------C
Q ss_conf             8989997899999999999999999879766312066631046888879999630-5874141176756----------7
Q gi|254780973|r  143 ANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEI-FPDCCRLWDLSKK----------E  211 (255)
Q Consensus       143 ~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEI-tPDs~R~Wd~~~~----------e  211 (255)
                      ++++++++|+++|+++|++++++|.++|++|||||||||++.+   |+|+||||| |||||||||+++|          +
T Consensus       167 ~~~e~~~~i~~~sl~i~~~~~~~~~~~GiiLvDtK~EFG~d~~---G~iiL~DEi~TPDSsR~W~~~~Y~~~~~~g~~~~  243 (295)
T PRK12607        167 LTDEQWYTLESMALALFTRGEEIAAEQGLILADTKYEFGRDAD---GRIILADEIHTPDSSRYWAADSYPARFAPGRRPP  243 (295)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC---CCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCC
T ss_conf             9889999999999999999999999789789985233126699---9889976404885012442434345431699976


Q ss_pred             CCCHHHHHCCHH-------------------HHHHHHHHHHHHH
Q ss_conf             044787612367-------------------7999999999971
Q gi|254780973|r  212 ECDKKRFSKSND-------------------QLLEGYSEVARRL  236 (255)
Q Consensus       212 ~lDKd~~R~~l~-------------------~v~~~Y~ev~~rl  236 (255)
                      +||||++|+||.                   .+.++|.++++||
T Consensus       244 s~dKq~vR~~l~~~~~~~~~~~P~lp~~iv~~t~~rY~~~ye~l  287 (295)
T PRK12607        244 SFDKDFLRDWVDARCDPYNDEIPEIPAEVVEATSARYIDAYERI  287 (295)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             52789999999844677789899899999999999999999998


No 9  
>cd01414 SAICAR_synt_Sc non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic, bacterial, and archaeal group of SAICAR synthetases represented by the Saccharomyces cerevisiae (Sc) enzyme, mostly absent in metazoans. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=100.00  E-value=0  Score=522.79  Aligned_cols=211  Identities=21%  Similarity=0.266  Sum_probs=198.1

Q ss_pred             EEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEC------------
Q ss_conf             63613303768728899799999368245162014556888799999999999998733997405743------------
Q gi|254780973|r    6 PVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRR------------   73 (255)
Q Consensus         6 ~lyeGKvK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~------------   73 (255)
                      ++|+||||++|+++| +.++|+||||+||||+++++.|||||++||+||+|||++|++ ||||||++.            
T Consensus         1 l~~~GKvrdvY~~~d-~~ll~v~tDriSAFD~v~~~~Ip~KG~vl~~iS~~wF~~l~~-~i~nH~i~~~~~~~~~~~~~~   78 (279)
T cd01414           1 LIYSGKVRDVYDLGD-GRLLFVATDRISAFDVILPPDIPGKGEVLTQISAFWFELTED-IIPNHLISTDVEDLPEIKEPE   78 (279)
T ss_pred             CCCCCCCCEEEECCC-CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCEECCCCCCCCCCCCCC
T ss_conf             975655644687599-849999958862356336789996489999999999999855-488637436663223322113


Q ss_pred             -CCCCEEEEECCCCCCEEEEEECEEECCHHCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             -88400231002655359999244601010025-------------6433773786434443454456886415578888
Q gi|254780973|r   74 -INMREQLVRDVEMIPLLITVRNTAAGSLAKRL-------------NIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITA  139 (255)
Q Consensus        74 -~~~~~~iv~k~~~iPiE~VvR~yaaGS~~kry-------------~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~  139 (255)
                       +++|+|+|+||+|||||||||||+|||+|++|             |+.+|++|++|++||++|++..|||.|+.+++..
T Consensus        79 ~~~~r~m~vkk~~~iPiE~IvRgyl~GS~~~~Y~~~~~~~g~~lp~Gl~e~~kL~~Pi~tpstK~~~~hD~~is~~~~~~  158 (279)
T cd01414          79 DPDGRSMVVKKAKPIPIECIVRGYLTGSGWKEYQKGGTVCGIKLPEGLREAQKLPEPIFTPSTKAEEGHDENISFEEAVE  158 (279)
T ss_pred             CCCCCEEEEEEEEEEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHH
T ss_conf             57986479874046317999955405432422036771148637876545666898535665235668998779999998


Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEEE-CCCCCEEEECCCCC------C
Q ss_conf             5408989997899999999999999999879766312066631046888879999630-58741411767567------0
Q gi|254780973|r  140 FNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEI-FPDCCRLWDLSKKE------E  212 (255)
Q Consensus       140 ~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEI-tPDs~R~Wd~~~~e------~  212 (255)
                        +++++++++|+++|+++|++++++|.++|++|||||||||++.+   |+|+|+||| ||||||||++++|+      +
T Consensus       159 --~~~~~~~~~i~~~sl~i~~~~~~~~~~~GiiLvDtK~EFG~~~~---g~iiL~DEi~TPDssR~W~~~~y~~g~~~~s  233 (279)
T cd01414         159 --IIGAELADELRELALALYERAAEYAAKRGLILADTKFEFGLDEN---GEIILIDEVLTPDSSRFWPADSYEPGKEQPS  233 (279)
T ss_pred             --HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCC---CCEEEEEECCCCCCCCCCCHHHCCCCCCCCC
T ss_conf             --66999999999999999999999999889889930245206589---9889985137985202332110036999543


Q ss_pred             CCHHHHHCCHH
Q ss_conf             44787612367
Q gi|254780973|r  213 CDKKRFSKSND  223 (255)
Q Consensus       213 lDKd~~R~~l~  223 (255)
                      ||||++|+||.
T Consensus       234 ~DKq~vRd~l~  244 (279)
T cd01414         234 FDKQFVRDWLE  244 (279)
T ss_pred             CCHHHHHHHHH
T ss_conf             36799999999


No 10 
>PRK13961 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=100.00  E-value=0  Score=509.91  Aligned_cols=228  Identities=20%  Similarity=0.262  Sum_probs=206.9

Q ss_pred             CCCEEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCC-------
Q ss_conf             8776361330376872889979999936824516201455688879999999999999873399740574388-------
Q gi|254780973|r    3 PRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRIN-------   75 (255)
Q Consensus         3 ~~~~lyeGKvK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~-------   75 (255)
                      ..+++|+||||+||++++ +.|+|++|||+||||+++++.|||||++||+||+|||++|+++ |||||++...       
T Consensus        12 ~l~l~~~GKVRdvY~~~d-~~ll~v~tDRiSAFD~v~~~~IP~KG~vL~~iS~fwF~~l~~~-ipnH~i~~~~~~~~~~~   89 (297)
T PRK13961         12 SLPLLYRGKVRDIYDIGD-DRLLMVATDRISAFDVVLPEPIPDKGRVLTQISNFWFDKLADI-VPNHLTGTPDPSVVPAD   89 (297)
T ss_pred             CCCCCCCCCCCEEEECCC-CEEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCHHH
T ss_conf             985103656723786499-9799999588620143368899967899999999999998605-77742258861133045


Q ss_pred             ------CCEEEEECCCCCCEEEEEECEEECCHHCCC-------------CCCCCCCCCCCCCCCCCCCCC-CCCCCCCHH
Q ss_conf             ------400231002655359999244601010025-------------643377378643444345445-688641557
Q gi|254780973|r   76 ------MREQLVRDVEMIPLLITVRNTAAGSLAKRL-------------NIPEGLSLPRSLVEFYYLPDS-SEKTLVSEE  135 (255)
Q Consensus        76 ------~~~~iv~k~~~iPiE~VvR~yaaGS~~kry-------------~~~~G~~l~~pl~e~~~K~d~-~~DP~i~~~  135 (255)
                            +|+|+|+||+|||||||||||+|||+|++|             |+.++++|+.|++++++|++. .||+.|+.+
T Consensus        90 ~~~~~~~R~mlvkk~~~iPiE~VvR~y~aGS~~~~Y~~~g~~~G~~lp~gl~e~~~L~~Pi~tpstKa~~g~hD~~is~~  169 (297)
T PRK13961         90 EAEQVLGRAVVVKKLKPLPVECVVRGYLTGSGWKDYQATGTVCGIKLPEGLREAQKLPEPIFTPATKAELGEHDENISFE  169 (297)
T ss_pred             HHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHH
T ss_conf             55541475304653253666899855404324777753385547758833111466898532644553323776557999


Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEEE-CCCCCEEEECCCCC---
Q ss_conf             88885408989997899999999999999999879766312066631046888879999630-58741411767567---
Q gi|254780973|r  136 HITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEI-FPDCCRLWDLSKKE---  211 (255)
Q Consensus       136 ~~~~~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEI-tPDs~R~Wd~~~~e---  211 (255)
                      ++.  ++++++++++|+++|++||++++++|.++|++|||||||||++.+|   +|+|+||| |||||||||+++|+   
T Consensus       170 ~~~--~~~g~e~~~~i~~~sl~i~~~~~~~a~~~GiiLvDtK~EFG~d~~g---~iiL~DEi~TPDSsRfW~~~~y~~G~  244 (297)
T PRK13961        170 EVV--ERVGAELAAQLRDVTLALYKRAAEYAAERGIIIADTKFEFGLDEDG---TLVLIDEVLTPDSSRYWPADGYQVGT  244 (297)
T ss_pred             HHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCC---CEEEEEECCCCCCCCCCCHHHHCCCC
T ss_conf             999--8719999999999999999999999998896797201232246999---88997503688522345344302799


Q ss_pred             ---CCCHHHHHCCHH-------------------HHHHHHHHHHHHHC
Q ss_conf             ---044787612367-------------------79999999999714
Q gi|254780973|r  212 ---ECDKKRFSKSND-------------------QLLEGYSEVARRLG  237 (255)
Q Consensus       212 ---~lDKd~~R~~l~-------------------~v~~~Y~ev~~rl~  237 (255)
                         +||||++|+||.                   .+.++|.++++||-
T Consensus       245 ~~~s~DKq~vRdwl~~~~~~~~~~~P~lP~~iv~~t~~~Y~~~ye~iT  292 (297)
T PRK13961        245 NPPSFDKQFVRDWLETSGWDKTPPAPPLPAEVIEKTAEKYIEALERLT  292 (297)
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             865447799999999659999999999999999999999999999986


No 11 
>PRK13959 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=100.00  E-value=0  Score=455.35  Aligned_cols=209  Identities=22%  Similarity=0.230  Sum_probs=187.9

Q ss_pred             ECCCEEEEECCCC-----CEEEEEEECCCEEECC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECC--------
Q ss_conf             1330376872889-----9799999368245162-0145568887999999999999987339974057438--------
Q gi|254780973|r    9 EEKTKIIYEGLEP-----GTLIQFFKDDNLLENN-PRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRI--------   74 (255)
Q Consensus         9 eGKvK~iY~~~d~-----~~li~~~~DriSAfD~-~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~--------   74 (255)
                      .||||++|..+++     +.++|+||||+||||. ++++.|||||++||+||+|||++|+++||||||++..        
T Consensus         1 ~GKVRDiY~~~~~~~~~~~~ll~V~TDRiSAFD~~vlp~~IP~KG~vL~~iS~fWF~~l~~~gIpnH~i~~~~~~~~~~~   80 (335)
T PRK13959          1 MGSVKDLYVDEPPTETDLGRGVFVFSDRYSVFDWGIMPDEIPDKGESLCRMGAYWFELLEELGIKTHYIGLVEGDKVRLD   80 (335)
T ss_pred             CCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCH
T ss_conf             99744442258654567874899980886534525146999973299999999999977646988603135675432200


Q ss_pred             ----CCCEEEEECCC-----------------------CCCEEEEEECEE-ECCHHCCC---------------CCCCCC
Q ss_conf             ----84002310026-----------------------553599992446-01010025---------------643377
Q gi|254780973|r   75 ----NMREQLVRDVE-----------------------MIPLLITVRNTA-AGSLAKRL---------------NIPEGL  111 (255)
Q Consensus        75 ----~~~~~iv~k~~-----------------------~iPiE~VvR~ya-aGS~~kry---------------~~~~G~  111 (255)
                          .+++|+|++++                       |||||||||||+ +||.|++|               |..+|+
T Consensus        81 ~~~~~~~~m~v~~~~v~~~~~~~~~~~~~~~~~~~~~~miPiE~IvRgYl~~gss~~~~~~~g~v~~~gi~lp~gl~~~~  160 (335)
T PRK13959         81 EAKSAPNEMVVKLTQVPKLPFEDGSYDYSIFHAAGGNYLIPLEFIFRNYVPVGSSLRDRIKPGEVKPEDIGLDEWPEYGE  160 (335)
T ss_pred             HCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             02588753688873114543344321111000124356557799994230573279998864871204777886543457


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEE
Q ss_conf             37864344434544568864155788885408989997899999999999999999879766312066631046888879
Q gi|254780973|r  112 SLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRI  191 (255)
Q Consensus       112 ~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~i  191 (255)
                      +|+.|||+|++|.+. ||+.||.+++..++.++.+++++|+++|+++|+.++++|.++||||||||||||++.+   |+|
T Consensus       161 kLp~PifTPsTKae~-hD~~is~~e~~~~~g~~~a~~~~l~~~sl~ly~~~~~~a~~~GiILaDTKfEFG~d~d---g~l  236 (335)
T PRK13959        161 KLPEPIVEFSTKLEE-TDRYLSRSEALEIAGLSDAEIEELEELARKIDEIITEEVEKRGLIHEDGKKEFALDLE---REI  236 (335)
T ss_pred             CCCCCEEECCCCCCC-CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCC---CCE
T ss_conf             488763303456645-8988899999987599999999999999999999999999789868864056017799---978


Q ss_pred             EEEEEE-CCCCCEEEECCCCCCCCHHHHHCCHH
Q ss_conf             999630-58741411767567044787612367
Q gi|254780973|r  192 VLADEI-FPDCCRLWDLSKKEECDKKRFSKSND  223 (255)
Q Consensus       192 iL~DEI-tPDs~R~Wd~~~~e~lDKd~~R~~l~  223 (255)
                      +|+||| ||||||||  ....++|||++|+|+.
T Consensus       237 vLiDEvlTPDSSRf~--~~~~~~~Kq~~r~~~~  267 (335)
T PRK13959        237 MVVDVVGTFDEDRFS--FEGVEVSKEMVRQYYR  267 (335)
T ss_pred             EEEEECCCCCCCCCC--CCCCCCCHHHHHHHHH
T ss_conf             999866898623468--8887768688888987


No 12 
>PRK13960 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=100.00  E-value=0  Score=428.90  Aligned_cols=247  Identities=18%  Similarity=0.218  Sum_probs=206.3

Q ss_pred             CCEEEECCCEEEEEC-----------------CCCCEEEEEEECCCEEECCCCCC-----CCCCHHHHHHHHHHHHHHHH
Q ss_conf             776361330376872-----------------88997999993682451620145-----56888799999999999998
Q gi|254780973|r    4 RNPVYEEKTKIIYEG-----------------LEPGTLIQFFKDDNLLENNPRCA-----TLNGKGVLNNRISEYMFTQL   61 (255)
Q Consensus         4 ~~~lyeGKvK~iY~~-----------------~d~~~li~~~~DriSAfD~~~~~-----~I~gKG~~l~~iS~~~F~~l   61 (255)
                      -+++|+||||.||..                 .|...++||.|||+||||.+++.     .|||||++||+||+|||+++
T Consensus        19 ~~~vhsgkvrsvy~l~~~ds~rli~~~~y~~~~d~~l~lmVaSDRISAFD~Vl~~e~~l~gIP~KG~vLn~iS~fWF~~~   98 (367)
T PRK13960         19 DKPVHSGKVRSVYWLTEEDSRRLIKEKGYNVPADTPLAIMVISDRISAFDCIWHGEGGLKGVPGKGAALNAISNHWFKLF   98 (367)
T ss_pred             CCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             88754672257885266777789986398889999889999705753015750475657899970599999999999744


Q ss_pred             HHCC-CCCEEEECCCCCEEEEECCCCCCEEEEEECEEECCHHCCCC--------------CCCCCCCCCCCCCCCCCC--
Q ss_conf             7339-97405743884002310026553599992446010100256--------------433773786434443454--
Q gi|254780973|r   62 GKIG-IPHYFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLN--------------IPEGLSLPRSLVEFYYLP--  124 (255)
Q Consensus        62 ~~~G-i~th~i~~~~~~~~iv~k~~~iPiE~VvR~yaaGS~~kry~--------------~~~G~~l~~pl~e~~~K~--  124 (255)
                      ...| ++||+++.+++.+|+||||+|+|||||||||+|||+|+.|.              +.++++|+.||+++++|.  
T Consensus        99 ~~~~l~~nHild~P~p~v~iVkKakpipIE~VVRGYLTGS~WreY~kg~r~vCGi~LP~GL~e~qkLpepIfTPSTKA~~  178 (367)
T PRK13960         99 KENGLADSHILDIPHPFVWIVQKARPVKIEAICRQYITGSMWRAYSKGEREFCGITLPEGLEKDQKLPELLITPSTKGIL  178 (367)
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCCHHHHHHCCCEEECCCCCCCHHHHCCCCCCCCCCCCCCCC
T ss_conf             76688776333478863478885555259999985112402898861787486856673102224598755078865545


Q ss_pred             ------CCCCCCCCCHHHHH----HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCC-CCEEEE
Q ss_conf             ------45688641557888----8540898999789999999999999999987976631206663104688-887999
Q gi|254780973|r  125 ------DSSEKTLVSEEHIT----AFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDD-ILRIVL  193 (255)
Q Consensus       125 ------d~~~DP~i~~~~~~----~~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~-~g~iiL  193 (255)
                            ...||-.|+.+.+.    ++++...+++....++..+.|+++++++.++|+||||||||||+..|.+ .++|+|
T Consensus       179 ~g~~~v~~~hD~nIs~~~i~~~~~~~~~~~~~di~~~e~l~~~~f~~~~~~a~~~GiILaDTKFEFG~~~d~~G~~~LIL  258 (367)
T PRK13960        179 TGIPGVPEADDVNISRSDIEANYQAFNFEKAEDIDLYEKLLKEGFKVISKALAKLDQIFVDTKFEFGYVTDANGNEKLIY  258 (367)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEEE
T ss_conf             68878876555656999999987553111399999999999999999999999799389976712774468888616999


Q ss_pred             EEEE-CCCCCEEEECCCCCC-----CCHHHHHCCH---------------------------------HHHHHHHHHHHH
Q ss_conf             9630-587414117675670-----4478761236---------------------------------779999999999
Q gi|254780973|r  194 ADEI-FPDCCRLWDLSKKEE-----CDKKRFSKSN---------------------------------DQLLEGYSEVAR  234 (255)
Q Consensus       194 ~DEI-tPDs~R~Wd~~~~e~-----lDKd~~R~~l---------------------------------~~v~~~Y~ev~~  234 (255)
                      +||| |||||||||+++|+.     -+|+.||++|                                 -++...|.++++
T Consensus       259 iDEVlTPDSSRfW~ad~Y~~G~~~ensKe~FRq~ll~~~~Dpd~llnk~rm~eR~~~a~~~~lP~evv~~~S~~Yi~~~E  338 (367)
T PRK13960        259 MDEVGTPDSSRIWDGAAYRDGKIVENSKEGFRQFLLNHFPDPDILLNKDRMPEREALARDNALPLEVMMDVSRTYTGIAE  338 (367)
T ss_pred             EECCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             85578887455564321468865556558899999853887101246111420111477777989999999999999999


Q ss_pred             HHCCCCCCCCCCCCCC
Q ss_conf             7142323687888652
Q gi|254780973|r  235 RLGIFKKNEPALKENL  250 (255)
Q Consensus       235 rl~~~~~~~p~~~~~~  250 (255)
                      |+-.-.=..|+-|...
T Consensus       339 ~ItG~~~~~~~~P~~~  354 (367)
T PRK13960        339 KITGAKIVLSANPKAE  354 (367)
T ss_pred             HHHCCCCCCCCCCHHH
T ss_conf             9708965578885899


No 13 
>TIGR02735 purC_vibrio phosphoribosylaminoimidazole-succinocarboxamide synthase; InterPro: IPR014106   Members of this protein family appear to represent a novel form of phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase), significantly different in sequence from (IPR001636 from INTERPRO), which is found in a broad range of bacteria and eukaryotes. Members of this family are found within the gammaproteobacteria in the genera Vibrio, Shewanella, and Colwellia, and also (reported as a fragment) in the primitive eukaryote Guillardia theta (Cryptomonas phi)..
Probab=100.00  E-value=0  Score=321.44  Aligned_cols=235  Identities=18%  Similarity=0.214  Sum_probs=202.8

Q ss_pred             CCCEEEECCCEEEEECCCCC-----------------EEEEEEECCCEEECCCCC-----CCCCCHHHHHHHHHHHHHHH
Q ss_conf             87763613303768728899-----------------799999368245162014-----55688879999999999999
Q gi|254780973|r    3 PRNPVYEEKTKIIYEGLEPG-----------------TLIQFFKDDNLLENNPRC-----ATLNGKGVLNNRISEYMFTQ   60 (255)
Q Consensus         3 ~~~~lyeGKvK~iY~~~d~~-----------------~li~~~~DriSAfD~~~~-----~~I~gKG~~l~~iS~~~F~~   60 (255)
                      .-+.+|+||||.||.+.+.|                 ..+|+-|||+||||.+=+     ..+||||+.||++|..||+.
T Consensus        17 Td~~VHSGKVRSVYWL~~~DSRRLI~~k~Y~Va~DA~LAI~viSDR~SAFDCIW~aEGG~~GVPGKGAALNAiS~~WF~~   96 (365)
T TIGR02735        17 TDEPVHSGKVRSVYWLTEEDSRRLIEEKGYPVAEDAPLAILVISDRISAFDCIWHAEGGLKGVPGKGAALNAISNHWFKL   96 (365)
T ss_pred             CCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCEEEEEEECHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             88852356301465158023578886368888877550466533100033300014787336686207888888999999


Q ss_pred             HHHCCC-CCEEEECCCCCEEEEECCCCCCEEEEEECEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH----
Q ss_conf             873399-740574388400231002655359999244601010025643377378643444345445688641557----
Q gi|254780973|r   61 LGKIGI-PHYFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEE----  135 (255)
Q Consensus        61 l~~~Gi-~th~i~~~~~~~~iv~k~~~iPiE~VvR~yaaGS~~kry~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~----  135 (255)
                      +.+.|+ ..|.++.++|-.++|+|++||.||.|+|-|+|||+||.|..+|...|..-+++..-|+..|..-+|||+    
T Consensus        97 F~~~gLA~SHIL~~PHP~vWiVQkAkPv~IEAI~RQYITGS~WRaYaKGER~FCG~~lP~~L~~~~~LpElLiTPS~KGi  176 (365)
T TIGR02735        97 FKEAGLAESHILDIPHPFVWIVQKAKPVKIEAICRQYITGSLWRAYAKGEREFCGIDLPEGLEKDQRLPELLITPSTKGI  176 (365)
T ss_pred             HHHCCCCHHHHCCCCCCEEEEEECCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCEEECCCCCCC
T ss_conf             87457400100158987189874376214300000123233454211566434677552123430568826766876210


Q ss_pred             ----------------------HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCC-CEEE
Q ss_conf             ----------------------88885408989997899999999999999999879766312066631046888-8799
Q gi|254780973|r  136 ----------------------HITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDI-LRIV  192 (255)
Q Consensus       136 ----------------------~~~~~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~-g~ii  192 (255)
                                            +-.++|.-..++++..+.+-.+=|..+++...+.|-+.||||||||+.++.+. .+|+
T Consensus       177 L~G~~Gv~~~DDVNItR~dIE~~~~~~~F~~p~DIdHYE~LL~~GF~VIs~~L~~lgQlFVDTKFEFGY~td~~G~~~LI  256 (365)
T TIGR02735       177 LEGIPGVPAIDDVNITRKDIERNYSAFNFEQPEDIDHYERLLREGFAVISDRLSKLGQLFVDTKFEFGYVTDVEGKRKLI  256 (365)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEECCCCCEEEE
T ss_conf             15788864424444667889989997078986312689999862589999877326743654001010111677762336


Q ss_pred             EEEEE-CCCCCEEEECCCCCC---C--CHHHHHCC---------------------------------HHHHHHHHHHHH
Q ss_conf             99630-587414117675670---4--47876123---------------------------------677999999999
Q gi|254780973|r  193 LADEI-FPDCCRLWDLSKKEE---C--DKKRFSKS---------------------------------NDQLLEGYSEVA  233 (255)
Q Consensus       193 L~DEI-tPDs~R~Wd~~~~e~---l--DKd~~R~~---------------------------------l~~v~~~Y~ev~  233 (255)
                      .+||+ ||||||+||+..|..   +  -|+=||+-                                 |=+|.+.|-.||
T Consensus       257 YMDEVGTPDSSRIW~A~~Y~~G~i~ENSKEgFRQ~LlN~~PD~~~LL~K~RM~ER~AlA~~~~LP~~~L~dvS~~YlgIA  336 (365)
T TIGR02735       257 YMDEVGTPDSSRIWDAGAYAQGKIVENSKEGFRQLLLNYFPDPDILLNKDRMVERAALARDNALPQEVLLDVSKTYLGIA  336 (365)
T ss_pred             EEECCCCCCCHHHHCHHHCCCCCEEECCCCHHHHHHHHCCCCHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             75146888601221244105882775275026888864078722202555405788752155574899999999999877


Q ss_pred             HHHC
Q ss_conf             9714
Q gi|254780973|r  234 RRLG  237 (255)
Q Consensus       234 ~rl~  237 (255)
                      .++-
T Consensus       337 ~~I~  340 (365)
T TIGR02735       337 EKIT  340 (365)
T ss_pred             HHHC
T ss_conf             6634


No 14 
>KOG2835 consensus
Probab=99.97  E-value=1.4e-32  Score=224.95  Aligned_cols=230  Identities=25%  Similarity=0.348  Sum_probs=201.7

Q ss_pred             CCEEEECCCEEEEECC-CCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEE
Q ss_conf             7763613303768728-899799999368245162014556888799999999999998733997405743884002310
Q gi|254780973|r    4 RNPVYEEKTKIIYEGL-EPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQLVR   82 (255)
Q Consensus         4 ~~~lyeGKvK~iY~~~-d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~~~~~iv~   82 (255)
                      .++|++||||++|... .++.++...+|++||||+++...|++||.+++++|.+||+.|...|++|+|.++.+.+...+.
T Consensus        12 ~k~la~gkvr~v~~~~~~~~~vlti~kD~I~a~~~~~a~~I~~ka~il~k~t~~~F~~l~~~gv~~~~~~~~~~t~~~~~   91 (373)
T KOG2835          12 GKELAEGKVRDVYELVDSPGLVLTISKDRITALDAAMANSIQGKAAILNKITSFVFELLGEAGIETAFTEQCGETAFEAR   91 (373)
T ss_pred             HHHHHEEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHCC
T ss_conf             32343454421024566887367765054103444542012567789887666667654032012111034441344227


Q ss_pred             CCCCCCEEEEEECEEECCHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH--HHHCCHHHHHHHHHHHHHHH
Q ss_conf             026553599992446010100256-433773786434443454456886415578888--54089899978999999999
Q gi|254780973|r   83 DVEMIPLLITVRNTAAGSLAKRLN-IPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITA--FNWANQSEVEEMTALSIRIN  159 (255)
Q Consensus        83 k~~~iPiE~VvR~yaaGS~~kry~-~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~--~~~~~~~~~~~i~~~a~~i~  159 (255)
                      +|.|.|+|++.|.-++||+.++++ +++|.++..+..+-+.|++..+||....+++..  .-++.++++..+++..+-+|
T Consensus        92 p~~~~~~~~v~~~~~ts~f~k~~~~vp~~~~~~~~~~~S~~k~~a~~~n~~g~e~~~~~~~~li~r~~~~~~~~~~~~if  171 (373)
T KOG2835          92 PCPMTPIEWVTRRCATSSFEKKNPGVPEGYRFRGYKTESTFKDDANMDNVWGDEQIIDCAGLLIGRDEVKIMQKLPLYIF  171 (373)
T ss_pred             CCCCCCCEEEEEECCHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCCHH
T ss_conf             88778730478622236688758667654153476565200221223763330134444433301011441000440001


Q ss_pred             HHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEE-EEECCCCCEEEECCCCCC-CCHHHHHCCHH-------HHHHHHH
Q ss_conf             99999999879766312066631046888879999-630587414117675670-44787612367-------7999999
Q gi|254780973|r  160 DFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLA-DEIFPDCCRLWDLSKKEE-CDKKRFSKSND-------QLLEGYS  230 (255)
Q Consensus       160 ~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~-DEItPDs~R~Wd~~~~e~-lDKd~~R~~l~-------~v~~~Y~  230 (255)
                      +.+..-+..+...++|.|.|||++.+  .++++++ |++..|+||.|+.+++.. .||+++++--+       =+.++|.
T Consensus       172 es~k~~~~~h~~~I~d~~ie~gv~~~--~~~~~~a~~v~~~~~~r~~~~~d~~im~D~~~~~d~~~vt~e~~ilv~~~~t  249 (373)
T KOG2835         172 ESLKAAWAGHNCAISDMKIEFGVDVT--LGEIVLASDVIDNDSWRMWPDGDGRIMKDKKVYFDLDEVTNEGLILVDENTT  249 (373)
T ss_pred             HHHHHHHCCCCCCCCCCHHHHCCCHH--HHHHHHHHCCCCHHHEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCC
T ss_conf             02345424776535642344403343--6555553103531234770067766443006784565777511588840377


Q ss_pred             HHHHH
Q ss_conf             99997
Q gi|254780973|r  231 EVARR  235 (255)
Q Consensus       231 ev~~r  235 (255)
                      ++..|
T Consensus       250 ~~msr  254 (373)
T KOG2835         250 PVMSR  254 (373)
T ss_pred             HHHHH
T ss_conf             04666


No 15 
>KOG2835 consensus
Probab=99.40  E-value=7.6e-14  Score=107.17  Aligned_cols=163  Identities=16%  Similarity=0.016  Sum_probs=133.1

Q ss_pred             HHHHHHHCCCCCEEEECCCCCEEEEECCCCCCEEEEEECEEECCHHCCCC-----------------------CCCCCCC
Q ss_conf             99998733997405743884002310026553599992446010100256-----------------------4337737
Q gi|254780973|r   57 MFTQLGKIGIPHYFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLN-----------------------IPEGLSL  113 (255)
Q Consensus        57 ~F~~l~~~Gi~th~i~~~~~~~~iv~k~~~iPiE~VvR~yaaGS~~kry~-----------------------~~~G~~l  113 (255)
                      ||+.....-+|.|++.+.-.+.+.++++..||.|.++|+|.+||+|+.+.                       ...+..+
T Consensus        87 ~~~~~p~~~~~~~~v~~~~~ts~f~k~~~~vp~~~~~~~~~~~S~~k~~a~~~n~~g~e~~~~~~~~li~r~~~~~~~~~  166 (373)
T KOG2835          87 AFEARPCPMTPIEWVTRRCATSSFEKKNPGVPEGYRFRGYKTESTFKDDANMDNVWGDEQIIDCAGLLIGRDEVKIMQKL  166 (373)
T ss_pred             HHHCCCCCCCCCEEEEEECCHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCHHHCCCCCCC
T ss_conf             44227887787304786222366887586676541534765652002212237633301344444333010114410004


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEE
Q ss_conf             86434443454456886415578888540898999789999999999999999987976631206663104688887999
Q gi|254780973|r  114 PRSLVEFYYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVL  193 (255)
Q Consensus       114 ~~pl~e~~~K~d~~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL  193 (255)
                      +.+++|-..+....|+-.|.+..++..  +...+.+...+.+...|....-...+.|.+++|+|+|||++...+++ ++|
T Consensus       167 ~~~ifes~k~~~~~h~~~I~d~~ie~g--v~~~~~~~~~a~~v~~~~~~r~~~~~d~~im~D~~~~~d~~~vt~e~-~il  243 (373)
T KOG2835         167 PLYIFESLKAAWAGHNCAISDMKIEFG--VDVTLGEIVLASDVIDNDSWRMWPDGDGRIMKDKKVYFDLDEVTNEG-LIL  243 (373)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCHHHHC--CCHHHHHHHHHHCCCCHHHEEEEECCCCCEEEEEEEEECCCCCCCCC-EEE
T ss_conf             400010234542477653564234440--33436555553103531234770067766443006784565777511-588


Q ss_pred             EEEE-CCCCCE-----------EEECCCCC------CCCHHHHHCCH
Q ss_conf             9630-587414-----------11767567------04478761236
Q gi|254780973|r  194 ADEI-FPDCCR-----------LWDLSKKE------ECDKKRFSKSN  222 (255)
Q Consensus       194 ~DEI-tPDs~R-----------~Wd~~~~e------~lDKd~~R~~l  222 (255)
                      .||. |||++|           +|=...|+      +.||++-|.|.
T Consensus       244 v~~~~t~~msr~a~~a~~~~~~~~iaga~~~~~~p~~v~a~f~~~gv  290 (373)
T KOG2835         244 VDENTTPVMSRYATSAKSRGVVLWIAGAYKAGHEPLMVDAEFERPGV  290 (373)
T ss_pred             EEECCCHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCC
T ss_conf             84037704666654025666189995167777772567764636685


No 16 
>PRK13961 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=88.22  E-value=0.39  Score=27.34  Aligned_cols=129  Identities=13%  Similarity=0.123  Sum_probs=71.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH----HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCC
Q ss_conf             77378643444345445688641557888854----08989997899999999999999999879766312066631046
Q gi|254780973|r  110 GLSLPRSLVEFYYLPDSSEKTLVSEEHITAFN----WANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLD  185 (255)
Q Consensus       110 G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~----~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~  185 (255)
                      |..++.++.+...+++.+.+|+++++.....|    -++.+++..+  .+.+.++.+++...+..-.+.+.--+      
T Consensus       129 g~~~G~~lp~gl~e~~~L~~Pi~tpstKa~~g~hD~~is~~~~~~~--~g~e~~~~i~~~sl~i~~~~~~~a~~------  200 (297)
T PRK13961        129 GTVCGIKLPEGLREAQKLPEPIFTPATKAELGEHDENISFEEVVER--VGAELAAQLRDVTLALYKRAAEYAAE------  200 (297)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_conf             8554775883311146689853264455332377655799999987--19999999999999999999999998------


Q ss_pred             CCCCEEEEEEE---EC--CC-CCEEEEC-CCC---CCCCHHHHHCCHH------HHHHHHHHHHHHHCCCCCCCCC-CCC
Q ss_conf             88887999963---05--87-4141176-756---7044787612367------7999999999971423236878-886
Q gi|254780973|r  186 DDILRIVLADE---IF--PD-CCRLWDL-SKK---EECDKKRFSKSND------QLLEGYSEVARRLGIFKKNEPA-LKE  248 (255)
Q Consensus       186 ~~~g~iiL~DE---It--PD-s~R~Wd~-~~~---e~lDKd~~R~~l~------~v~~~Y~ev~~rl~~~~~~~p~-~~~  248 (255)
                        .| |+|+|-   ..  +| .--+=|- .|.   .--||+-|+.+..      +.+..|-   .. ..|.++.|+ ..|
T Consensus       201 --~G-iiLvDtK~EFG~d~~g~iiL~DEi~TPDSsRfW~~~~y~~G~~~~s~DKq~vRdwl---~~-~~~~~~~~~P~lP  273 (297)
T PRK13961        201 --RG-IIIADTKFEFGLDEDGTLVLIDEVLTPDSSRYWPADGYQVGTNPPSFDKQFVRDWL---ET-SGWDKTPPAPPLP  273 (297)
T ss_pred             --CC-CEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHH---HH-CCCCCCCCCCCCC
T ss_conf             --89-67972012322469998899750368852234534430279986544779999999---96-5999999999999


Q ss_pred             CCCCC
Q ss_conf             52223
Q gi|254780973|r  249 NLILN  253 (255)
Q Consensus       249 ~~~~~  253 (255)
                      ..|++
T Consensus       274 ~~iv~  278 (297)
T PRK13961        274 AEVIE  278 (297)
T ss_pred             HHHHH
T ss_conf             99999


No 17 
>PRK12607 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=85.00  E-value=0.25  Score=28.48  Aligned_cols=125  Identities=10%  Similarity=-0.020  Sum_probs=74.5

Q ss_pred             CCEEEEEEC---EEECCHHCCCCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH----HHCCHH
Q ss_conf             535999924---4601010025643-------------37737864344434544568864155788885----408989
Q gi|254780973|r   87 IPLLITVRN---TAAGSLAKRLNIP-------------EGLSLPRSLVEFYYLPDSSEKTLVSEEHITAF----NWANQS  146 (255)
Q Consensus        87 iPiE~VvR~---yaaGS~~kry~~~-------------~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~----~~~~~~  146 (255)
                      -|-+.+||.   ...--.+|.|-.+             +|..+..++++...+++.+.+|++++......    ..++.+
T Consensus        80 ~~~~~lvkk~~~iPiE~VvRgy~aGS~~k~y~~~y~~g~~~~~g~~lp~gl~~~~~Lp~PiftpstK~d~~~hD~~Is~~  159 (295)
T PRK12607         80 DPNVVLGRRLTVLPVECVVRGYLAGSTWTSILTLYKAGERTMYGERLPDGLRENQKLPPPIFTPTTKAFEGGHDEPLTIA  159 (295)
T ss_pred             CCHHHEEEECEEEEEEEEECCCEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHH
T ss_conf             73122010021664577752710021168888775047753126556654446766888745566303334788777778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEE---EC--CCC-CEEEEC----CCCCCCCHH
Q ss_conf             99789999999999999999987976631206663104688887999963---05--874-141176----756704478
Q gi|254780973|r  147 EVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADE---IF--PDC-CRLWDL----SKKEECDKK  216 (255)
Q Consensus       147 ~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DE---It--PDs-~R~Wd~----~~~e~lDKd  216 (255)
                      ++....-++.+.++.+.+...+..-++.+.--+-        | |+|+|-   ..  .|. --+=|-    ++..--|++
T Consensus       160 ~i~~~~l~~~e~~~~i~~~sl~i~~~~~~~~~~~--------G-iiLvDtK~EFG~d~~G~iiL~DEi~TPDSsR~W~~~  230 (295)
T PRK12607        160 EIVARGLLTDEQWYTLESMALALFTRGEEIAAEQ--------G-LILADTKYEFGRDADGRIILADEIHTPDSSRYWAAD  230 (295)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------C-CEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCHH
T ss_conf             9998658988999999999999999999999978--------9-789985233126699988997640488501244243


Q ss_pred             HHHC
Q ss_conf             7612
Q gi|254780973|r  217 RFSK  220 (255)
Q Consensus       217 ~~R~  220 (255)
                      -|+.
T Consensus       231 ~Y~~  234 (295)
T PRK12607        231 SYPA  234 (295)
T ss_pred             HHHH
T ss_conf             4345


No 18 
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases; InterPro: IPR004507   This family contains flavoproteins, which are aromatic acid decarboxylases. An example is the Saccharomyces cerevisiae gene, PAD1 that encodes phenylacrylic acid decarboxylase. Mutations of this gene are viable and confer resistance to cinnamic acid. ; GO: 0016831 carboxy-lyase activity.
Probab=49.74  E-value=7.9  Score=19.09  Aligned_cols=85  Identities=15%  Similarity=0.208  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEC---------------------------------------CCCCEEEEECCCCC
Q ss_conf             799999999999998733997405743---------------------------------------88400231002655
Q gi|254780973|r   47 GVLNNRISEYMFTQLGKIGIPHYFIRR---------------------------------------INMREQLVRDVEMI   87 (255)
Q Consensus        47 G~~l~~iS~~~F~~l~~~Gi~th~i~~---------------------------------------~~~~~~iv~k~~~i   87 (255)
                      |+----......+.|.+.|+.+|++--                                       -.-+.|+|-+|.|=
T Consensus         8 GAsGvI~G~RLL~~Lk~~GvE~~LviS~~A~~tiK~Etd~~~~~v~~LAT~~Y~~~D~~a~i~SGSf~~Dgm~VvPCSmK   87 (181)
T TIGR00421         8 GASGVIYGIRLLEVLKELGVEVHLVISKWAKKTIKYETDYDPGEVEELATKYYDEDDFAAPIASGSFKFDGMVVVPCSMK   87 (181)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEECCCHH
T ss_conf             24489999999999986793687863558999998853899889999967532611211000157867682688648567


Q ss_pred             CEEEEEECEEECCHHCC-----------------CCC------------CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             35999924460101002-----------------564------------337737864344434544568864
Q gi|254780973|r   88 PLLITVRNTAAGSLAKR-----------------LNI------------PEGLSLPRSLVEFYYLPDSSEKTL  131 (255)
Q Consensus        88 PiE~VvR~yaaGS~~kr-----------------y~~------------~~G~~l~~pl~e~~~K~d~~~DP~  131 (255)
                      -+=.|.-||+.-++.|.                 .|+            +.|...=||++-||.|+...||=.
T Consensus        88 tLsaIa~G~a~NLitRAADV~LKErRkLvL~~REtPL~SiHLENmL~L~~~G~IIlPP~PaFY~rPkS~~Dl~  160 (181)
T TIGR00421        88 TLSAIANGYAENLITRAADVALKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILPPVPAFYNRPKSVEDLI  160 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHH
T ss_conf             8999985110556888975542205424640367887515489999998279253279554447898878898


No 19 
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit; InterPro: IPR006443   This family of sequences describe a subset of formate dehydrogenase alpha chains found mainly in proteobacteria but also in Aquifex aeolicus. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits of 32 and 20 kDa. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilised mainly in the nitrate respiration by nitrate reductase . In Escherichia coli and Salmonella typhi, there are two forms of the formate dehydrogenase, one induced by nitrate which is strictly anaerobic (fdn), and one incuced during the transition from aerobic to anaerobic growth (fdo). This subunit is one of only three proteins in Escherichia coli which contain selenocysteine .; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0005737 cytoplasm.
Probab=36.78  E-value=17  Score=17.04  Aligned_cols=41  Identities=20%  Similarity=0.122  Sum_probs=15.9

Q ss_pred             EEEEECEEECCHHCCC--CCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999244601010025--64337-73786434443454456886
Q gi|254780973|r   90 LITVRNTAAGSLAKRL--NIPEG-LSLPRSLVEFYYLPDSSEKT  130 (255)
Q Consensus        90 E~VvR~yaaGS~~kry--~~~~G-~~l~~pl~e~~~K~d~~~DP  130 (255)
                      |=+.|=||++|++++-  +++|- +....|+.+...-....|||
T Consensus       851 EG~grLfa~~syv~~~dGPlPEhYEP~EsPv~~npfhP~v~hnP  894 (1043)
T TIGR01553       851 EGVGRLFAADSYVKIEDGPLPEHYEPVESPVITNPFHPNVLHNP  894 (1043)
T ss_pred             CCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             77667615641565047878864378447656778887876772


No 20 
>KOG2646 consensus
Probab=34.70  E-value=35  Score=15.07  Aligned_cols=69  Identities=13%  Similarity=0.074  Sum_probs=42.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEC
Q ss_conf             433773786434443454456886415578888540898---99978999999999999999998797663120666310
Q gi|254780973|r  107 IPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQ---SEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRL  183 (255)
Q Consensus       107 ~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~~~~---~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~  183 (255)
                      -..|.+|.+-+++.+.+...+ |-        ..++.+.   ..+.+...-++..-+...+++..+|+.+||.+=|.++.
T Consensus       276 ~GfGLrcn~il~kIC~~~GIK-Di--------s~kv~GsrN~m~i~k~~~e~l~~qet~qqlA~rkG~hvVdVr~e~~~~  346 (396)
T KOG2646         276 DGFGLRCNPILIKICECAGIK-DI--------SGKVKGSRNEMNITKAAFEALALQETHQQLAYRKGLHVVDVRGEVYRL  346 (396)
T ss_pred             CCCCCCCCHHHHHHHHHHCCC-CC--------CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEC
T ss_conf             865450058999999984630-00--------112402300778999999987643326777874597489832513223


Q ss_pred             C
Q ss_conf             4
Q gi|254780973|r  184 L  184 (255)
Q Consensus       184 ~  184 (255)
                      .
T Consensus       347 t  347 (396)
T KOG2646         347 T  347 (396)
T ss_pred             C
T ss_conf             5


No 21 
>pfam10866 DUF2704 Protein of unknown function (DUF2704). This viral family of proteins has no known function.
Probab=33.70  E-value=14  Score=17.50  Aligned_cols=66  Identities=23%  Similarity=0.304  Sum_probs=44.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             02564337737864344434544568864155788885408989997899999999999999999879766
Q gi|254780973|r  103 KRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQL  173 (255)
Q Consensus       103 kry~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~L  173 (255)
                      ..|. ..|.++.+..+|.+..-..+-|    ..-+..-.-++..++++..++.+.+|++++.+|-.--+.|
T Consensus        21 ~eyT-VDGLkLKp~YVeYYkqLq~lVd----~~Vm~lSK~l~mKEydeVySLgRQLYEiLRglFVDEPFKL   86 (169)
T pfam10866        21 DEYT-VDGLKLKPAYVEYYKQLQILVD----FLVMTLSKELNMKEYDEVYSLGRQLYEILRGLFVDEPFKL   86 (169)
T ss_pred             HHCC-CCCEECCHHHHHHHHHHHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             4312-4465436999999999999999----9999998751818899999999999999987751760899


No 22 
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.91  E-value=12  Score=17.87  Aligned_cols=115  Identities=17%  Similarity=0.178  Sum_probs=71.8

Q ss_pred             CCCCEEEEEECEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf             65535999924460101002564337737864344434544568864155788--8854089899978999999999999
Q gi|254780973|r   85 EMIPLLITVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHI--TAFNWANQSEVEEMTALSIRINDFM  162 (255)
Q Consensus        85 ~~iPiE~VvR~yaaGS~~kry~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~--~~~~~~~~~~~~~i~~~a~~i~~~l  162 (255)
                      .-.-+++|+=+-.+||+..-.+..  ..+...+-     . +.+=|.++....  .+++.++..-+.-+.-...++|...
T Consensus        64 ada~vdvI~Y~CtsgS~i~G~~~d--~ei~~~ie-----~-~~~v~vvTts~Avv~aL~al~a~ri~vlTPY~~evn~~e  135 (238)
T COG3473          64 ADAGVDVIVYGCTSGSLIGGPGYD--KEIAQRIE-----E-AKGVPVVTTSTAVVEALNALGAQRISVLTPYIDEVNQRE  135 (238)
T ss_pred             CCCCCCEEEEECCCEEEECCCCHH--HHHHHHHH-----H-CCCCCEEECHHHHHHHHHHHCCCEEEEECCCHHHHHHHH
T ss_conf             756667899962620164277455--99999998-----6-269855614089999998617515898525305441589


Q ss_pred             HHHHHHCCCEEECCC-------EEEEECCCCCCCEEEEEEEE-CCCCCEEEECCC
Q ss_conf             999998797663120-------66631046888879999630-587414117675
Q gi|254780973|r  163 TGLFLGINIQLVDFR-------IKCGRLLDDDILRIVLADEI-FPDCCRLWDLSK  209 (255)
Q Consensus       163 ~~~~~~~Gl~LvD~K-------~EFG~~~~~~~g~iiL~DEI-tPDs~R~Wd~~~  209 (255)
                      .++++..|+..+|+|       +|.|+..--  --.-|+-++ +||.--++-..+
T Consensus       136 ~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~--~~y~lAk~~~~~~~DaiFiSCT  188 (238)
T COG3473         136 IEFLEANGFEIVDFKGLGITDNLEIGRQEPW--AVYRLAKEVFTPDADAIFISCT  188 (238)
T ss_pred             HHHHHHCCEEEEEEECCCCCCCCHHCCCCHH--HHHHHHHHHCCCCCCEEEEEEE
T ss_conf             9999848927997541577665001146838--9999999856777776999700


No 23 
>pfam01238 PMI_typeI Phosphomannose isomerase type I. This is a family of Phosphomannose isomerase type I enzymes (EC 5.3.1.8).
Probab=27.27  E-value=14  Score=17.45  Aligned_cols=11  Identities=9%  Similarity=0.060  Sum_probs=5.7

Q ss_pred             CCCCCEEEECC
Q ss_conf             58741411767
Q gi|254780973|r  198 FPDCCRLWDLS  208 (255)
Q Consensus       198 tPDs~R~Wd~~  208 (255)
                      .|...=|-+.+
T Consensus       255 ~PGeAlfl~Ag  265 (373)
T pfam01238       255 NPGEAMFLKAN  265 (373)
T ss_pred             CCCCEEEECCC
T ss_conf             69877873699


No 24 
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=25.09  E-value=31  Score=15.37  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=11.2

Q ss_pred             EEEECCCCCCEEEEEECEEECC
Q ss_conf             2310026553599992446010
Q gi|254780973|r   79 QLVRDVEMIPLLITVRNTAAGS  100 (255)
Q Consensus        79 ~iv~k~~~iPiE~VvR~yaaGS  100 (255)
                      |+=+--..|+=--|..|.+.|.
T Consensus        93 MIFQ~yNLi~R~~VL~NVL~GR  114 (253)
T TIGR02315        93 MIFQHYNLIERLTVLENVLHGR  114 (253)
T ss_pred             CEEHHHHCCCCCHHHHHHHHHH
T ss_conf             0110102378303667642143


No 25 
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=24.84  E-value=37  Score=14.90  Aligned_cols=66  Identities=11%  Similarity=0.082  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEECCCCCCCCHHHHHCCHHHHHHHH
Q ss_conf             9999999999999987976631206663104688887999963058741411767567044787612367799999
Q gi|254780973|r  154 LSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGY  229 (255)
Q Consensus       154 ~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEItPDs~R~Wd~~~~e~lDKd~~R~~l~~v~~~Y  229 (255)
                      .-.++-+.+..++.+.|+++.|+- ||-..-++  +++++||-=  -+-     .+.-..-.+++++|+.++..-+
T Consensus       122 ~~~~il~~~~~l~~~~glVHgDLS-EyNILv~~--~~~~iID~p--QaV-----~~~hp~A~e~L~RDi~ni~~fF  187 (190)
T cd05145         122 LYEQVVEQMRRLYQEAGLVHGDLS-EYNILYHD--GKPYIIDVS--QAV-----ELDHPNALEFLRRDIRNINRFF  187 (190)
T ss_pred             HHHHHHHHHHHHHHHCCEEECCCC-HHHEEEEC--CCEEEEECC--CCC-----CCCCCCHHHHHHHHHHHHHHHH
T ss_conf             999999999999997492103641-55338978--947999557--612-----5789988999999999999985


No 26 
>PHA00012 assembly protein
Probab=24.35  E-value=42  Score=14.54  Aligned_cols=16  Identities=31%  Similarity=0.399  Sum_probs=8.0

Q ss_pred             HHHHHHHHCCCCCEEE
Q ss_conf             9999987339974057
Q gi|254780973|r   56 YMFTQLGKIGIPHYFI   71 (255)
Q Consensus        56 ~~F~~l~~~Gi~th~i   71 (255)
                      -||-+..+.|=...|+
T Consensus       109 dw~lHaRKlGWDv~fi  124 (361)
T PHA00012        109 DWFLHARKLGWDIIFI  124 (361)
T ss_pred             HHHHHHHHCCCCEEEE
T ss_conf             9999850048729999


No 27 
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases; InterPro: IPR011828    This entry represents a group of archaeal decarboxylating dehydrogenases which include the leucine biosynthesis enzyme 3-isopropylmalate dehydrogenase (LeuB, LEU3) and the methanogenic cofactor CoB biosynthesis enzyme isohomocitrate dehydrogenase (AksF). Both of these have been characterised in Methanococcus janaschii . Sequences from the non-methanogenic archaea are also represented in this entry, presumably LeuB, although phylogenetic trees cannot establish which gene is which in the methanogens.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0051287 NAD binding, 0009098 leucine biosynthetic process.
Probab=23.57  E-value=24  Score=16.11  Aligned_cols=20  Identities=30%  Similarity=0.508  Sum_probs=10.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             6888799999999999998733
Q gi|254780973|r   43 LNGKGVLNNRISEYMFTQLGKI   64 (255)
Q Consensus        43 I~gKG~~l~~iS~~~F~~l~~~   64 (255)
                      |.-||.  -+|..|-|++..+.
T Consensus       156 iTr~gS--eRIa~~A~~lAk~r  175 (350)
T TIGR02088       156 ITRKGS--ERIARFAFELAKKR  175 (350)
T ss_pred             ECHHHH--HHHHHHHHHHHHHH
T ss_conf             024643--99999999999860


No 28 
>TIGR00395 leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases.; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=22.68  E-value=56  Score=13.75  Aligned_cols=158  Identities=12%  Similarity=0.144  Sum_probs=83.4

Q ss_pred             EEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-----CEEEECCCCCE----------E
Q ss_conf             68728899799999368245162014556888799999999999998733997-----40574388400----------2
Q gi|254780973|r   15 IYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIP-----HYFIRRINMRE----------Q   79 (255)
Q Consensus        15 iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~-----th~i~~~~~~~----------~   79 (255)
                      +|-.++.+.++...-+.-..-||+   ++-.-|.+.  +|.--|+.|++.-..     --.+...++..          .
T Consensus       310 ~wv~P~~~Yv~~~~~~e~etenGi---elienGiwi--~~~~A~~~L~yq~~~PkrGf~~~~~~v~g~~liG~~v~~Pq~  384 (1109)
T TIGR00395       310 VWVNPDITYVIAEVGGEKETENGI---ELIENGIWI--VSKEAVENLSYQKLKPKRGFLKVIEEVDGKQLIGKKVKNPQV  384 (1109)
T ss_pred             EEECCCCCEEEEEECCCCCHHHHH---HHHHCCHHH--HHHHHHHHCCCCCCCCCCCEEEEEEEECHHHHCCCEEECCCC
T ss_conf             555577516899733740012004---455422577--789999604343458874227886530734241764457732


Q ss_pred             EEECCCCCCEEEEEECEEECC-----------------------HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             310026553599992446010-----------------------100256433773786434443454456886415578
Q gi|254780973|r   80 LVRDVEMIPLLITVRNTAAGS-----------------------LAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEH  136 (255)
Q Consensus        80 iv~k~~~iPiE~VvR~yaaGS-----------------------~~kry~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~  136 (255)
                      +-+++.++|.|+|--+++||-                       ++.+||+-+...-+.-++... +-|..++- -...-
T Consensus       385 v~~e~pILPa~fV~~~~gTGvV~sVPahaP~Dyia~~DL~~d~E~l~~YGi~k~~v~di~~v~~i-~~~~yG~~-pA~~i  462 (1109)
T TIGR00395       385 VGKEVPILPAEFVDTEKGTGVVMSVPAHAPADYIALEDLKRDEELLEKYGIIKDVVEDIEPVPLI-KVDGYGDL-PAKEI  462 (1109)
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHCCCCHHHHHCCCCEEEE-EECCCCCC-CHHHH
T ss_conf             58977547701126788854788417887035899986077801455327732466414855676-30887775-48999


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHH-------------------------HHHHHHHHHCCCEEECCCEEEE
Q ss_conf             88854089899978999999999-------------------------9999999987976631206663
Q gi|254780973|r  137 ITAFNWANQSEVEEMTALSIRIN-------------------------DFMTGLFLGINIQLVDFRIKCG  181 (255)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~a~~i~-------------------------~~l~~~~~~~Gl~LvD~K~EFG  181 (255)
                      ++.+|+=|+++=+.+.+.+-.+|                         +.+++=.-+.|  |+|.=+||.
T Consensus       463 ve~~gi~sq~dk~~L~~Atk~~YK~ey~~Gvm~~~~~~Y~G~kV~eak~~v~~dL~~~G--lA~v~yEFs  530 (1109)
T TIGR00395       463 VEELGIKSQKDKNLLEEATKELYKEEYHTGVMIENILDYKGMKVSEAKEKVKEDLIDKG--LADVMYEFS  530 (1109)
T ss_pred             HHHHCCCCCCCHHHHHHHHHHHCHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCC--CCEEECCCC
T ss_conf             98828888772024788740022132150032047757886117999999999998537--860201657


No 29 
>pfam10902 DUF2693 Protein of unknown function (DUF2693). This viral family of proteins has no known function.
Probab=21.62  E-value=42  Score=14.51  Aligned_cols=13  Identities=23%  Similarity=0.457  Sum_probs=8.8

Q ss_pred             CCCCCEEEECCCC
Q ss_conf             5874141176756
Q gi|254780973|r  198 FPDCCRLWDLSKK  210 (255)
Q Consensus       198 tPDs~R~Wd~~~~  210 (255)
                      .++|||.||.+.+
T Consensus        47 n~e~~~V~Dve~~   59 (83)
T pfam10902        47 SKESVRVYDVELK   59 (83)
T ss_pred             CCCEEEEEECCCC
T ss_conf             8766789973569


No 30 
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin.  Many of these band 7 domain-containing proteins are lipid raft-associated.  Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes.  Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions.  Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins.  Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins.  Prokaryotic H
Probab=21.00  E-value=61  Score=13.54  Aligned_cols=40  Identities=18%  Similarity=0.189  Sum_probs=30.4

Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEE
Q ss_conf             5408989997899999999999999999879766312066
Q gi|254780973|r  140 FNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIK  179 (255)
Q Consensus       140 ~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~E  179 (255)
                      .++..-+......+++-.+.+.+...+.+.|+.|+++-+|
T Consensus       152 ~~~~~~~~~~~~~els~~i~~~l~~~~~~~Glel~~f~I~  191 (207)
T cd03408         152 SGLAVMLLAANRDELSKAVREALAPWFASFGLELVSVYIE  191 (207)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf             2852526789999999999999999999659188888897


No 31 
>COG2000 Predicted Fe-S protein [General function prediction only]
Probab=20.20  E-value=63  Score=13.43  Aligned_cols=38  Identities=18%  Similarity=0.379  Sum_probs=22.1

Q ss_pred             CCC--CCEE--EECCCCCCCCH-HHHHC-CHHHHHHHHHHHHHHH
Q ss_conf             587--4141--17675670447-87612-3677999999999971
Q gi|254780973|r  198 FPD--CCRL--WDLSKKEECDK-KRFSK-SNDQLLEGYSEVARRL  236 (255)
Q Consensus       198 tPD--s~R~--Wd~~~~e~lDK-d~~R~-~l~~v~~~Y~ev~~rl  236 (255)
                      +||  |||=  ++..+.+ +.| |++|+ -+|-.+..|.+|+++-
T Consensus        92 lPne~scre~lf~~~~~~-lekgdiiRyRp~Gcpi~hfaeIld~~  135 (226)
T COG2000          92 LPNECSCREILFPFKSKE-LEKGDIIRYRPLGCPITHFAEILDEA  135 (226)
T ss_pred             CCCCCCCCEEEEEECCCC-CCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf             999654100688603200-01363797034788622079999861


Done!