Query         gi|254780973|ref|YP_003065386.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 255
No_of_seqs    142 out of 1715
Neff          6.1 
Searched_HMMs 13730
Date          Wed Jun  1 10:59:45 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780973.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1kuta_ d.143.1.1 (A:) SAICAR  100.0       0       0  522.8  18.7  223   12-241     1-223 (224)
  2 d2cnqa1 d.143.1.1 (A:2-305) SA 100.0       0       0  502.5  19.5  231    2-237     9-299 (304)
  3 d1pmia_ b.82.1.3 (A:) Phosphom  26.3     7.8 0.00057   16.3   0.4   16   84-99      3-18  (440)
  4 d2h3ka1 b.1.28.1 (A:1-144) Iro  12.7      33  0.0024   12.3   1.1   50   69-122    42-92  (144)
  5 d1v74b_ a.24.20.1 (B:) Colicin  11.3      15  0.0011   14.5  -1.0   35  191-230    52-86  (87)
  6 d1tf5a1 a.162.1.1 (A:227-348)   11.3      34  0.0025   12.3   0.7   31  189-230    85-115 (122)
  7 d1nkta1 a.162.1.1 (A:226-349)   11.3      33  0.0024   12.4   0.7   31  189-230    87-117 (124)
  8 d1v8ya_ d.113.1.1 (A:) ADP-rib  10.2      41   0.003   11.7   2.3   62    4-67      1-80  (158)
  9 d2fhqa1 b.45.1.1 (A:3-137) Put   8.2      45  0.0033   11.5   0.4   19  191-210   112-130 (135)
 10 d1nkta4 c.37.1.19 (A:397-615)    7.4      53  0.0039   11.0   3.2   38  198-244   180-217 (219)

No 1  
>d1kuta_ d.143.1.1 (A:) SAICAR synthase {Thermotoga maritima [TaxId: 2336]}
Probab=100.00  E-value=0  Score=522.81  Aligned_cols=223  Identities=28%  Similarity=0.383  Sum_probs=213.1

Q ss_pred             CEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCCCCCEEE
Q ss_conf             03768728899799999368245162014556888799999999999998733997405743884002310026553599
Q gi|254780973|r   12 TKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRRINMREQLVRDVEMIPLLI   91 (255)
Q Consensus        12 vK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~~~~~~~iv~k~~~iPiE~   91 (255)
                      ||.+|..+  +.++|+||||+||||+++++.|||||++||+||+|||++|+++||||||++.++||+|+|++|+||||||
T Consensus         1 tki~~~~~--d~ll~~f~DriSAfD~~~~~~IpgKG~~l~~is~~~F~~L~~~gI~tH~i~~~~~~~~~vkk~~~iPiE~   78 (224)
T d1kuta_           1 TKIVKVTG--DYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILMKYLSEKGIKTHLVEYIPPRTLKVIPLKMFPLEV   78 (224)
T ss_dssp             CEEEEEET--TEEEEEECCC-----------CCSHHHHHHHHHHHHHHHHHHTTCCBSEEEEETTTEEEECCCEECSEEE
T ss_pred             CEEEEECC--CEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHCCCCCEEE
T ss_conf             90899379--9899999788635376167889982099999999999974117843320035672123320126677699


Q ss_pred             EEECEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99244601010025643377378643444345445688641557888854089899978999999999999999998797
Q gi|254780973|r   92 TVRNTAAGSLAKRLNIPEGLSLPRSLVEFYYLPDSSEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINI  171 (255)
Q Consensus        92 VvR~yaaGS~~kry~~~~G~~l~~pl~e~~~K~d~~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl  171 (255)
                      |||||||||+|++|+..+|..|++|++++++|++++|||++|++++..+++++++++++|+++|+++|++++++|.++|+
T Consensus        79 VvR~y~~GS~~~~y~~~~g~~~~~pl~e~~~k~~~~~D~~i~~~~~~~~~~~~~~~~~~i~~~al~i~~~l~~~~~~~gl  158 (224)
T d1kuta_          79 VVRLKKAGSFVRRYGGAEGEDLPVPLVEFFIKDDERHDPMVCVDHLEILGIATKKQAEKMKEAAVKITLALKEFFERANF  158 (224)
T ss_dssp             EEEEECCHHHHHHHCCCTTCEEEEEEEEEEECCGGGTCCBCCHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             EEEEEEHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99643717767542665565477544320002444676321577776762277888899999999999999999863462


Q ss_pred             EEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             6631206663104688887999963058741411767567044787612367799999999997142323
Q gi|254780973|r  172 QLVDFRIKCGRLLDDDILRIVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYSEVARRLGIFKK  241 (255)
Q Consensus       172 ~LvD~K~EFG~~~~~~~g~iiL~DEItPDs~R~Wd~~~~e~lDKd~~R~~l~~v~~~Y~ev~~rl~~~~~  241 (255)
                      +|||||||||++.+   |+|+|+|||||||||||+.  +++||||+||+||++++++|+||++|+..+..
T Consensus       159 iLvD~K~EFG~~~~---g~ivL~DEItpDs~R~w~~--~~~~DK~~~R~~l~~~~~~Y~ev~~~~~~~~~  223 (224)
T d1kuta_         159 ELWDIKYEFGLDKD---GNVVLGDEISPDTFRLRKK--GEIFDKDVYRRDLGDPLKKYREVLELCRSLNS  223 (224)
T ss_dssp             EEEEEEECEEECTT---CCEEECSCCSTTTEEEEET--TCCCCHHHHHHGGGCTTHHHHHHHHHHHHHTT
T ss_pred             EEECCCEEEEECCC---CCEEEEECCCCCCCCCCCC--CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf             42321158726699---9299998038975461789--87448788871022043899999999988544


No 2  
>d2cnqa1 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=0  Score=502.51  Aligned_cols=231  Identities=21%  Similarity=0.242  Sum_probs=211.6

Q ss_pred             CCCCEEEECCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEC--------
Q ss_conf             987763613303768728899799999368245162014556888799999999999998733997405743--------
Q gi|254780973|r    2 RPRNPVYEEKTKIIYEGLEPGTLIQFFKDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIGIPHYFIRR--------   73 (255)
Q Consensus         2 ~~~~~lyeGKvK~iY~~~d~~~li~~~~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~Gi~th~i~~--------   73 (255)
                      .+..+||+||||+||++++ +.|+|+||||+||||+++++.|||||++||+||+|||++|+ .||+|||++.        
T Consensus         9 ~~l~ll~~GKvK~vY~~d~-~~ll~~~tDriSAfD~~~~~~Ip~KG~~l~~is~~~F~~l~-~gi~tH~i~~~~~~~~~~   86 (304)
T d2cnqa1           9 GILPLVARGKVRDIYEVDA-GTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLS-NDVRNHLVDIAPGKTIFD   86 (304)
T ss_dssp             TSSCEEEECSSEEEEEEET-TEEEEEECSCCEETTEECSSCCTTHHHHHHHHHHHHHHHTT-TTSEESBCCCCTTCCGGG
T ss_pred             CCCCCEECCCCEEEEECCC-CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCCEECCCCCHHHHH
T ss_conf             8775100056626897089-97999997984034642678899768999999999999865-547765223688311100


Q ss_pred             --------------CCCCEEEEECCCCCCEEEEEECEEECCHHCCC-------------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             --------------88400231002655359999244601010025-------------643377378643444345445
Q gi|254780973|r   74 --------------INMREQLVRDVEMIPLLITVRNTAAGSLAKRL-------------NIPEGLSLPRSLVEFYYLPDS  126 (255)
Q Consensus        74 --------------~~~~~~iv~k~~~iPiE~VvR~yaaGS~~kry-------------~~~~G~~l~~pl~e~~~K~d~  126 (255)
                                    +++|+|+|+||+|||||||||||+|||+|++|             +..++++|++|++++++|++ 
T Consensus        87 ~~~~~~~~~~~~~~~~~r~~~vkk~~~iPiE~VvR~y~tGS~~~~y~~~~~~~g~~lp~gl~~~~~l~~pi~tpstK~e-  165 (304)
T d2cnqa1          87 YLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIVRGYITGSAWKEYVKTGTVHGLKQPQGLKESQEFPEPIFTPSTKAE-  165 (304)
T ss_dssp             GSCGGGGSHHHHHHHTTSEEEEECCEECSSBEEEEEECCHHHHHHHHHHSEETTEECCTTCCTTCEEEEEEECCBCCCC-
T ss_pred             CCCCCCCCCCHHHCCCCCEEEEEEEEEEEEEEEEECCEECCCEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHH-
T ss_conf             1322224620232148830588751330069999634501322211347602166688775323347741023200000-


Q ss_pred             CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCEEEEEEEE-CCCCCEEE
Q ss_conf             68864155788885408989997899999999999999999879766312066631046888879999630-58741411
Q gi|254780973|r  127 SEKTLVSEEHITAFNWANQSEVEEMTALSIRINDFMTGLFLGINIQLVDFRIKCGRLLDDDILRIVLADEI-FPDCCRLW  205 (255)
Q Consensus       127 ~~DP~i~~~~~~~~~~~~~~~~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~~~~g~iiL~DEI-tPDs~R~W  205 (255)
                      .+|+.++.++..+.++++++++++|+++++++|+.++++|.++|++|||||+|||++.+|  ++|+|+||+ ||||||||
T Consensus       166 ~gd~d~~~~~~~~~~i~~~~~~~~i~~~sl~i~~~~~~~~~~~GliLvD~K~EFG~~~~~--~eiiliDEv~TPDs~R~W  243 (304)
T d2cnqa1         166 QGEHDENISPAQAAELVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKT--NEIILVDEVLTPDSSRFW  243 (304)
T ss_dssp             ---CCCBCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEEEETTT--TEEEEESCCSCTTTEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCC--CCEEEEEEECCCCCCCEE
T ss_conf             000245565789999861899999999999999999999974792788757999860455--522787663379853233


Q ss_pred             ECCCCC------CCCHHHHHCCH------------------HHHHHHHHHHHHHHC
Q ss_conf             767567------04478761236------------------779999999999714
Q gi|254780973|r  206 DLSKKE------ECDKKRFSKSN------------------DQLLEGYSEVARRLG  237 (255)
Q Consensus       206 d~~~~e------~lDKd~~R~~l------------------~~v~~~Y~ev~~rl~  237 (255)
                      |.++|+      +||||+||+|+                  +++.++|.++++||-
T Consensus       244 ~~~~y~~g~~~~~lDKq~~Rd~l~~~~~~~~~~p~lP~ei~~~~~~~Y~~~~~~lt  299 (304)
T d2cnqa1         244 NGASYKVGESQDSYDKQFLRDWLTANKLNGVNGVKMPQDIVDRTRAKYIEAYETLT  299 (304)
T ss_dssp             ETTTCCTTSCCCCSSTHHHHHHHHHTTCTTCTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             05433578876452369999899865867898889999999999999999999986


No 3  
>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}
Probab=26.33  E-value=7.8  Score=16.27  Aligned_cols=16  Identities=13%  Similarity=0.131  Sum_probs=12.6

Q ss_pred             CCCCCEEEEEECEEEC
Q ss_conf             2655359999244601
Q gi|254780973|r   84 VEMIPLLITVRNTAAG   99 (255)
Q Consensus        84 ~~~iPiE~VvR~yaaG   99 (255)
                      .+|+++.+.+++|+||
T Consensus         3 ~~~~~l~~~~q~Y~WG   18 (440)
T d1pmia_           3 EKLFRIQCGYQNYDWG   18 (440)
T ss_dssp             SSEEEEEECEECCTTB
T ss_pred             CCEEECCCCCCCCCCC
T ss_conf             7568631786168788


No 4  
>d2h3ka1 b.1.28.1 (A:1-144) Iron-regulated surface determinant protein H, IsdH {Staphylococcus aureus [TaxId: 1280]}
Probab=12.67  E-value=33  Score=12.33  Aligned_cols=50  Identities=16%  Similarity=0.131  Sum_probs=30.1

Q ss_pred             EEEECCCCCEEEEECCCCCCEEEEEECEEECCHHCCCCCCCCC-CCCCCCCCCCC
Q ss_conf             0574388400231002655359999244601010025643377-37864344434
Q gi|254780973|r   69 YFIRRINMREQLVRDVEMIPLLITVRNTAAGSLAKRLNIPEGL-SLPRSLVEFYY  122 (255)
Q Consensus        69 h~i~~~~~~~~iv~k~~~iPiE~VvR~yaaGS~~kry~~~~G~-~l~~pl~e~~~  122 (255)
                      ||-+...|...+-.+-.++    |--+.-+||.||.+...+|. .||--|+....
T Consensus        42 Hy~S~~~PA~V~fTk~k~e----iEL~l~tastWkKFEVYE~dkKLPv~LVSYd~   92 (144)
T d2h3ka1          42 HFFSIKDPADVYYTKKKAE----VELDINTASTWKKFEVYENNQKLPVRLVSYSP   92 (144)
T ss_dssp             CTTSCCSCEEECCCSSSCE----EEEEETTGGGCCCCCEEETTEEECCEEEEEEC
T ss_pred             EEEECCCCCEEEEECCCCE----EEECCCCCCEEEEEEEECCCCCCCEEEEECCC
T ss_conf             8752168606999368844----89724443402446786188637569986378


No 5  
>d1v74b_ a.24.20.1 (B:) Colicin D immunity protein {Escherichia coli [TaxId: 562]}
Probab=11.30  E-value=15  Score=14.46  Aligned_cols=35  Identities=23%  Similarity=0.367  Sum_probs=22.3

Q ss_pred             EEEEEEECCCCCEEEECCCCCCCCHHHHHCCHHHHHHHHH
Q ss_conf             9999630587414117675670447876123677999999
Q gi|254780973|r  191 IVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYS  230 (255)
Q Consensus       191 iiL~DEItPDs~R~Wd~~~~e~lDKd~~R~~l~~v~~~Y~  230 (255)
                      .++||-.+||+.|    ++|| +|-+-.|+....++++|+
T Consensus        52 F~~AD~y~pd~dR----~dyE-lDd~~Lr~EV~~lleK~~   86 (87)
T d1v74b_          52 FMAAERFEPDADR----ANYE-IDDNGLKVEVRSILEKFK   86 (87)
T ss_dssp             HHHHHTBCCSTTC----CTTC-BCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCCCCH----HHCC-CCHHHHHHHHHHHHHHHC
T ss_conf             9999974998540----1023-377999999999999846


No 6  
>d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of SecA {Bacillus subtilis [TaxId: 1423]}
Probab=11.26  E-value=34  Score=12.26  Aligned_cols=31  Identities=26%  Similarity=0.352  Sum_probs=19.6

Q ss_pred             CEEEEEEEECCCCCEEEECCCCCCCCHHHHHCCHHHHHHHHH
Q ss_conf             879999630587414117675670447876123677999999
Q gi|254780973|r  189 LRIVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYS  230 (255)
Q Consensus       189 g~iiL~DEItPDs~R~Wd~~~~e~lDKd~~R~~l~~v~~~Y~  230 (255)
                      |+++++||.|.   |+-+.        -.+..+|-+.+|+-+
T Consensus        85 ~~v~ivDe~TG---R~~~g--------r~~~~GlhQaiEaKE  115 (122)
T d1tf5a1          85 GQVVIVDSFTG---RLMKG--------RRYSEGLHQAIEAKE  115 (122)
T ss_dssp             TEEEEBCTTTC---CBCTT--------CCCSTTHHHHHHHHT
T ss_pred             CEEEEEECCCC---CCCCC--------CCCCCHHHHHHHHHC
T ss_conf             75998713478---87457--------665717899999854


No 7  
>d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=11.26  E-value=33  Score=12.36  Aligned_cols=31  Identities=19%  Similarity=0.288  Sum_probs=19.7

Q ss_pred             CEEEEEEEECCCCCEEEECCCCCCCCHHHHHCCHHHHHHHHH
Q ss_conf             879999630587414117675670447876123677999999
Q gi|254780973|r  189 LRIVLADEIFPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYS  230 (255)
Q Consensus       189 g~iiL~DEItPDs~R~Wd~~~~e~lDKd~~R~~l~~v~~~Y~  230 (255)
                      |+|+++||.|.   |+-+.        -.+..+|-+.+|+-+
T Consensus        87 ~~v~ivDe~TG---R~~~g--------rr~s~GLHQaiEaKE  117 (124)
T d1nkta1          87 GEVLIVDEFTG---RVLIG--------RRYNEGMHQAIEAKE  117 (124)
T ss_dssp             SCEEEBCSSSC---CBCTT--------CCCSTTHHHHHHHHT
T ss_pred             CEEEEEECCCC---CCCCC--------CCCCHHHHHHHHHHC
T ss_conf             86999734588---75158--------783717899999863


No 8  
>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}
Probab=10.21  E-value=41  Score=11.74  Aligned_cols=62  Identities=13%  Similarity=0.042  Sum_probs=29.1

Q ss_pred             CCEEEECCCEEEEE--------CCC--------CCEEEEEE--ECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             77636133037687--------288--------99799999--3682451620145568887999999999999987339
Q gi|254780973|r    4 RNPVYEEKTKIIYE--------GLE--------PGTLIQFF--KDDNLLENNPRCATLNGKGVLNNRISEYMFTQLGKIG   65 (255)
Q Consensus         4 ~~~lyeGKvK~iY~--------~~d--------~~~li~~~--~DriSAfD~~~~~~I~gKG~~l~~iS~~~F~~l~~~G   65 (255)
                      ++.+|+||...+=.        ..+        ++.++++-  +.-+..+....|...-.+|+  +...+-.=|..++.|
T Consensus         1 r~~~y~g~~~~~~~~~~~~~v~~~~aV~vl~~~~~~vlLv~q~R~~~~~~~~elP~G~ve~gE--~~~~aA~REl~EEtG   78 (158)
T d1v8ya_           1 RTYLYRGRILNLALEGRYEIVEHKPAVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGE--DPLEAARRELAEQTG   78 (158)
T ss_dssp             CEEEEECSSEEEEEETTEEEEEECCEEEEEEEETTEEEEEECCBTTTTBCCBBCSEEECCTTC--CHHHHHHHHHHHHHS
T ss_pred             CEEEEECCEEEEEEEEEEEEEECCCEEEEEEEECCEEEEEEEEECCCCCCEEECCHHHCCCCC--CHHHHHHHHHHHHCC
T ss_conf             929985668866895249999519989999999999999991664779811756532343667--999999899886438


Q ss_pred             CC
Q ss_conf             97
Q gi|254780973|r   66 IP   67 (255)
Q Consensus        66 i~   67 (255)
                      +.
T Consensus        79 ~~   80 (158)
T d1v8ya_          79 LS   80 (158)
T ss_dssp             EE
T ss_pred             CC
T ss_conf             84


No 9  
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=8.22  E-value=45  Score=11.49  Aligned_cols=19  Identities=16%  Similarity=0.160  Sum_probs=14.1

Q ss_pred             EEEEEEECCCCCEEEECCCC
Q ss_conf             99996305874141176756
Q gi|254780973|r  191 IVLADEIFPDCCRLWDLSKK  210 (255)
Q Consensus       191 iiL~DEItPDs~R~Wd~~~~  210 (255)
                      .+| =.|+|++.+||+.+..
T Consensus       112 ~~v-iri~p~~~~~W~~g~~  130 (135)
T d2fhqa1         112 YVL-LKFTANHATYWIEGTF  130 (135)
T ss_dssp             EEE-EEEEEEEEEEEETTEE
T ss_pred             EEE-EEEEEEEEEEECCCCC
T ss_conf             999-9999729999769973


No 10 
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.41  E-value=53  Score=11.02  Aligned_cols=38  Identities=21%  Similarity=0.324  Sum_probs=25.6

Q ss_pred             CCCCCEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             58741411767567044787612367799999999997142323687
Q gi|254780973|r  198 FPDCCRLWDLSKKEECDKKRFSKSNDQLLEGYSEVARRLGIFKKNEP  244 (255)
Q Consensus       198 tPDs~R~Wd~~~~e~lDKd~~R~~l~~v~~~Y~ev~~rl~~~~~~~p  244 (255)
                      +|.||||.-     ||+-+++|..-++-+.   .+..|++. ++++|
T Consensus       180 DPGsSrFfl-----SLeDdLmr~F~~~~i~---~lm~~l~~-~e~~~  217 (219)
T d1nkta4         180 DPGESRFYL-----SLGDELMRRFNGAALE---TLLTRLNL-PDDVP  217 (219)
T ss_dssp             CCEEEEEEE-----ETTSHHHHHTTHHHHH---HHHHHTTC-CTTSC
T ss_pred             CCCCCEEEE-----ECCHHHHHHHCHHHHH---HHHHHCCC-CCCCC
T ss_conf             975125677-----4467999987839999---99997199-99998


Done!