HHsearch alignment for GI: 254780974 and conserved domain: TIGR00979
>TIGR00979 fumC_II fumarate hydratase, class II; InterPro: IPR005677 Fumarase C catalyzes the stereospecific interconversion of fumarate to L-malate as part of the metabolic citric acid or Kreb's cycle. The recent three-dimensional structure of fumarase C from Escherichia coli has identified a binding site for anions which is generated by side chains from three of the four subunits within the tetramer. These same side chains are found in the three most highly conserved regions within the class II fumarate hydratase family. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences.; GO: 0004333 fumarate hydratase activity, 0006106 fumarate metabolic process, 0045239 tricarboxylic acid cycle enzyme complex.
Probab=100.00 E-value=0 Score=538.69 Aligned_cols=388 Identities=21% Similarity=0.223 Sum_probs=340.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHCCCHHHHHHHHHHHC----
Q ss_conf 588999999999999999777689998999999983001-------278989999887463785479999999867----
Q gi|254780974|r 16 LETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRN-------AVFNVDRIMELDSIIKHDVIAFLTHLAEII---- 84 (435)
Q Consensus 16 ~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~-------~~~d~~~~~~~~~~~~~~v~a~~~~l~~~~---- 84 (435)
T Consensus 39 P~~lI~Afa~lKk~aA~~N~~LG~L~~~k~~~I~~A~DeiL~G~~~d~FPL~vWQTGSGTQsN--MN~NEViANrA~~~~ 116 (459)
T TIGR00979 39 PKELIRAFAILKKAAAIVNEDLGKLDAEKADAIAAAADEILAGKFDDHFPLVVWQTGSGTQSN--MNVNEVIANRAIELL 116 (459)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCC--CCHHHHHHHHHHHHH
T ss_conf 788999999999999999686279988899999998769873874477985378678774100--225899999999984
Q ss_pred CHH-H--CCCC------CCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 934-3--2255------677707787789999985110-24678888889999873332010021012321025542223
Q gi|254780974|r 85 GPD-A--RFIH------QGMTSSDILDTCFSIQLMRST-DILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFG 154 (435)
Q Consensus 85 g~~-~--~~iH------~G~Ts~Di~~Ta~~l~~r~~l-~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G 154 (435)
T Consensus 117 gG~~G~k~~iHPNDhVNkSQSSNDtFPTAMHIAAv~~~~~~LIP~L~~L~~~l~~Ks~~F~~ivKIGRTHLqDAtPLTLG 196 (459)
T TIGR00979 117 GGKLGSKKPIHPNDHVNKSQSSNDTFPTAMHIAAVLAIKEQLIPALENLKKTLDEKSKEFADIVKIGRTHLQDATPLTLG 196 (459)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHH
T ss_conf 77667888789876568887788876678999999999875316799999999999998608720056441324454002
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHC----CCCCCCCCC---CHHHHHHHHHHH
Q ss_conf 3344554310001488999864310100111-22222466466788655422----578766352---023333345677
Q gi|254780974|r 155 LKLAMAYAEFSRSRKRLLTAREEIAVCAISG-SVGTFSNIHPYVEQHVADAM----GLKTDPISS---QVIARDRHAMYF 226 (435)
Q Consensus 155 ~~~~~~~~~l~r~~~rl~~~~~~~~~~~lgG-AvGt~~~~~~~~~~~~a~~L----Gl~~~~~~~---~~~~rd~~~e~~ 226 (435)
T Consensus 197 QEfSGY~~qL~~~l~~i~~sL~~l~~LA~GGTAVGTGLN~~~~f~~Kv~~~~~~~T~~~F~~ApNKF~ALa~HDAiv~ah 276 (459)
T TIGR00979 197 QEFSGYVAQLEHGLERIEESLPHLYELALGGTAVGTGLNTHPGFDEKVAEEIAKFTGLPFVTAPNKFEALAAHDAIVEAH 276 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 45899999999999999999999999735773231566886667889999999973789989961677864458999864
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHH-HH
Q ss_conf 888776446889999999951---67876000256446542012321024156787752112334310023543114-31
Q gi|254780974|r 227 SVLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVAL-WH 302 (435)
Q Consensus 227 ~~l~~~~~~l~kia~Dl~~l~---~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~-~~ 302 (435)
T Consensus 277 GaL~~LA~sL~KIAnD~R~LgSGPRCGlGEl~~P--ENEPGSSIMPGKVNPTQ~EalTMVC~QVmGNd~tI~~agS~GnF 354 (459)
T TIGR00979 277 GALKTLAASLMKIANDIRWLGSGPRCGLGELFLP--ENEPGSSIMPGKVNPTQCEALTMVCVQVMGNDATIGFAGSQGNF 354 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7899999988779877878507886420025677--78757876978987104358899888773002454533204653
Q ss_pred CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 35432101555417204578999999987423100437357999986445837899999999872999899999999999
Q gi|254780974|r 303 ERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNA 382 (435)
Q Consensus 303 erd~~~~~~~~~~l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a 382 (435)
T Consensus 355 ELNVFkPViIyNfLqS~~LLsDa~~SF~~hcv~Gi~pN~~ri~~~l~~SLMLVT------ALNPh-iG----Yd~AakiA 423 (459)
T TIGR00979 355 ELNVFKPVIIYNFLQSVRLLSDAMESFREHCVVGIEPNKERIQQLLENSLMLVT------ALNPH-IG----YDNAAKIA 423 (459)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH------HHCCC-CC----HHHHHHHH
T ss_conf 123452589987998999999899988864012450245899999752113345------42354-57----47899999
Q ss_pred HHHHHCCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHC
Q ss_conf 9999819998999850743230599899998518898850
Q gi|254780974|r 383 MKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTK 422 (435)
Q Consensus 383 ~~a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g 422 (435)
T Consensus 424 K~Ahk~GitLKeaAl~----Lg~Lse~eFD~~V~PE~Mvg 459 (459)
T TIGR00979 424 KKAHKEGITLKEAALE----LGLLSEEEFDKWVVPEKMVG 459 (459)
T ss_pred HHHHHCCCCHHHHHHH----CCCCCHHHCCCCCCCCCCCC
T ss_conf 9997439777899974----48978688278279862679