Query gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 435
No_of_seqs 163 out of 3859
Neff 7.4
Searched_HMMs 39220
Date Mon May 30 04:31:42 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780974.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07492 adenylosuccinate lyas 100.0 0 0 894.0 39.3 433 1-433 1-433 (433)
2 PRK08470 adenylosuccinate lyas 100.0 0 0 882.8 40.6 430 1-433 1-442 (442)
3 PRK07380 adenylosuccinate lyas 100.0 0 0 882.1 40.2 428 1-431 1-429 (431)
4 TIGR00928 purB adenylosuccinat 100.0 0 0 869.7 30.7 432 1-432 1-469 (469)
5 PRK09053 3-carboxy-cis,cis-muc 100.0 0 0 849.6 40.3 431 3-435 10-447 (452)
6 COG0015 PurB Adenylosuccinate 100.0 0 0 833.6 38.5 433 1-433 1-437 (438)
7 PRK08540 adenylosuccinate lyas 100.0 0 0 824.5 38.8 433 3-435 8-444 (449)
8 cd01597 pCLME pCLME: prokaryot 100.0 0 0 819.8 38.9 430 2-433 3-436 (437)
9 cd03302 Adenylsuccinate_lyase_ 100.0 0 0 811.5 36.5 417 1-423 1-436 (436)
10 PRK06390 adenylosuccinate lyas 100.0 0 0 811.5 36.4 431 3-435 8-442 (451)
11 PRK08937 adenylosuccinate lyas 100.0 0 0 805.3 39.3 424 1-433 1-424 (425)
12 cd01360 Adenylsuccinate_lyase_ 100.0 0 0 785.7 34.0 374 4-380 1-374 (387)
13 cd01595 Adenylsuccinate_lyase_ 100.0 0 0 736.2 32.2 371 10-380 1-375 (381)
14 TIGR00838 argH argininosuccina 100.0 0 0 658.5 26.1 412 15-434 23-463 (469)
15 PRK05975 3-carboxy-cis,cis-muc 100.0 0 0 646.6 27.3 331 2-338 12-346 (353)
16 cd01359 Argininosuccinate_lyas 100.0 0 0 640.6 30.5 413 15-434 4-430 (435)
17 TIGR02426 protocat_pcaB 3-carb 100.0 0 0 636.9 24.1 335 2-337 2-351 (351)
18 PRK00855 argininosuccinate lya 100.0 0 0 627.3 29.5 415 13-434 26-453 (459)
19 cd01334 Lyase_I Lyase class I 100.0 0 0 612.0 20.6 321 20-340 1-330 (330)
20 PRK04833 argininosuccinate lya 100.0 0 0 597.8 29.1 416 12-434 22-451 (455)
21 PRK09285 adenylosuccinate lyas 100.0 0 0 597.5 27.9 414 3-431 14-455 (456)
22 PRK06705 argininosuccinate lya 100.0 0 0 592.0 29.9 423 5-434 21-466 (502)
23 cd01598 PurB PurB: PurB_like 100.0 0 0 590.2 25.7 400 10-423 1-425 (425)
24 PRK12308 bifunctional arginino 100.0 0 0 575.7 30.0 413 14-433 24-450 (614)
25 COG0165 ArgH Argininosuccinate 100.0 0 0 574.4 28.8 415 12-433 24-451 (459)
26 PRK13353 aspartate ammonia-lya 100.0 0 0 560.0 27.9 388 16-422 42-461 (473)
27 PRK00485 fumC fumarate hydrata 100.0 0 0 559.0 26.4 389 16-423 41-462 (462)
28 cd01362 Fumarase_classII Class 100.0 0 0 555.6 26.3 385 17-420 38-455 (455)
29 PRK02186 argininosuccinate lya 100.0 0 0 541.4 28.1 397 12-416 435-840 (892)
30 cd01357 Aspartatase Aspartase_ 100.0 0 0 541.8 27.7 382 16-416 37-450 (450)
31 KOG2700 consensus 100.0 0 0 542.4 24.3 430 2-433 11-459 (481)
32 TIGR00979 fumC_II fumarate hyd 100.0 0 0 538.7 22.2 388 16-422 39-459 (459)
33 PRK12273 aspA aspartate ammoni 100.0 0 0 525.0 27.1 384 17-423 45-464 (471)
34 cd01596 Aspartatase_like Aspar 100.0 0 0 519.8 28.3 382 16-416 37-450 (450)
35 PRK12425 fumarate hydratase; P 100.0 0 0 514.2 27.7 388 17-423 40-460 (464)
36 PRK06389 argininosuccinate lya 100.0 0 0 507.6 28.0 395 16-429 28-432 (434)
37 COG0114 FumC Fumarase [Energy 100.0 0 0 486.0 25.7 389 16-423 40-461 (462)
38 KOG1316 consensus 100.0 0 0 480.5 21.8 405 11-423 26-436 (464)
39 TIGR00839 aspA aspartate ammon 100.0 0 0 478.1 17.3 388 14-423 37-460 (469)
40 pfam00206 Lyase_1 Lyase. 100.0 0 0 477.5 16.8 286 4-289 2-312 (312)
41 COG1027 AspA Aspartate ammonia 100.0 0 0 450.5 26.1 385 17-423 44-463 (471)
42 KOG1317 consensus 100.0 0 0 390.3 19.6 388 16-423 67-486 (487)
43 cd01594 Lyase_I_like Lyase cla 100.0 2.8E-45 0 301.6 15.7 224 20-330 1-230 (231)
44 pfam10397 ADSL_C Adenylosuccin 99.7 1.1E-17 2.7E-22 129.5 9.7 81 352-432 1-81 (81)
45 pfam08328 ASL_C Adenylosuccina 98.3 1.3E-06 3.2E-11 60.6 6.2 111 302-421 3-115 (115)
46 pfam10415 FumaraseC_C Fumarase 98.0 4.8E-06 1.2E-10 56.9 4.1 54 361-423 2-55 (55)
47 KOG2700 consensus 97.7 0.00013 3.3E-09 48.1 6.4 192 64-285 150-350 (481)
48 CHL00161 secY preprotein trans 57.2 12 0.00031 17.1 3.2 30 326-355 305-334 (417)
49 TIGR00614 recQ_fam ATP-depende 52.9 12 0.00031 17.1 2.6 145 87-248 78-230 (497)
50 COG3799 Mal Methylaspartate am 52.2 15 0.00038 16.6 2.9 31 354-384 371-401 (410)
51 PRK07306 ribonucleotide-diphos 49.0 8.9 0.00023 18.0 1.4 60 129-190 137-204 (720)
52 TIGR00065 ftsZ cell division p 49.0 8.7 0.00022 18.0 1.3 20 235-254 192-211 (365)
53 PRK11057 ATP-dependent DNA hel 48.8 19 0.00048 16.0 3.3 54 154-210 148-201 (607)
54 PRK12907 secY preprotein trans 47.2 13 0.00032 17.0 1.9 30 326-355 319-348 (434)
55 COG0201 SecY Preprotein transl 45.7 21 0.00053 15.7 3.6 102 252-355 239-351 (436)
56 PRK07632 ribonucleotide-diphos 45.6 14 0.00035 16.8 1.9 79 101-189 111-197 (696)
57 TIGR01502 B_methylAsp_ase meth 43.5 23 0.00057 15.4 2.9 32 355-386 377-408 (414)
58 TIGR00624 tag DNA-3-methyladen 42.9 11 0.00028 17.4 1.1 15 272-286 90-104 (185)
59 TIGR02036 dsdC D-serine deamin 42.5 23 0.0006 15.4 2.8 21 241-262 133-153 (302)
60 pfam01257 Complex1_24kDa Respi 40.9 25 0.00063 15.2 4.2 25 29-53 18-42 (145)
61 PRK07539 NADH dehydrogenase su 40.0 26 0.00065 15.1 4.0 25 29-53 27-51 (154)
62 TIGR02093 P_ylase glycogen/sta 37.2 28 0.00072 14.8 3.0 71 325-397 291-367 (822)
63 PRK12417 secY preprotein trans 37.2 28 0.00072 14.8 4.4 30 326-355 288-317 (399)
64 pfam00343 Phosphorylase Carboh 33.6 32 0.00082 14.5 3.7 15 70-84 223-237 (712)
65 TIGR02317 prpB methylisocitrat 30.2 37 0.00094 14.1 2.1 68 169-248 3-71 (287)
66 TIGR00967 3a0501s007 preprotei 28.3 33 0.00084 14.4 1.5 28 328-355 379-407 (489)
67 KOG0351 consensus 27.4 41 0.001 13.8 3.3 127 72-212 312-449 (941)
68 pfam00417 Ribosomal_S3_N Ribos 27.2 15 0.00037 16.6 -0.4 10 268-277 1-10 (62)
69 TIGR01340 aconitase_mito aconi 25.0 41 0.0011 13.8 1.6 159 72-261 19-236 (761)
70 PRK07187 ribonucleotide-diphos 24.8 39 0.001 13.9 1.4 58 131-190 137-202 (722)
71 KOG3124 consensus 24.1 47 0.0012 13.5 3.4 32 354-385 178-209 (267)
72 KOG0993 consensus 24.1 24 0.00061 15.3 0.2 14 265-278 248-261 (542)
73 cd06452 SepCysS Sep-tRNA:Cys-t 23.0 50 0.0013 13.3 3.4 82 35-122 8-93 (361)
74 PRK07571 bidirectional hydroge 22.5 51 0.0013 13.3 5.8 18 33-50 45-62 (169)
75 KOG2368 consensus 21.5 53 0.0014 13.1 2.0 10 355-364 262-271 (316)
76 TIGR02933 nifM_nitrog nitrogen 21.3 54 0.0014 13.1 6.1 164 18-194 29-227 (270)
77 cd02188 gamma_tubulin Gamma-tu 21.2 30 0.00077 14.7 0.2 25 180-206 136-160 (431)
78 PRK05988 formate dehydrogenase 21.0 55 0.0014 13.1 5.8 25 29-53 28-52 (156)
79 TIGR00459 aspS_bact aspartyl-t 20.5 56 0.0014 13.0 4.6 179 88-281 434-643 (653)
No 1
>PRK07492 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=893.98 Aligned_cols=433 Identities=73% Similarity=1.163 Sum_probs=428.2
Q ss_pred CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 98874987888727958899999999999999977768999899999998300127898999988746378547999999
Q gi|254780974|r 1 MIPRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHL 80 (435)
Q Consensus 1 m~~ry~~~e~~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~a~~~~l 80 (435)
||+||++|||+.||||++++++|++||.|+|++|+++|+||++++++|.+++....+|++++++.++.++|||+|+++.+
T Consensus 1 mi~RY~~~em~~ifs~~~~~~~~l~vE~ALa~Aqa~lGiIp~~aa~~I~~~~~~~~~d~~~i~~~e~~~~hdv~a~v~~l 80 (433)
T PRK07492 1 MIPRYSRPEMVAIWEPETKFRIWFEIEAHACEAQAELGVIPKEAAETIWEKGKDAEFDVARIDEIEAVTKHDVIAFLTHL 80 (433)
T ss_pred CCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 98764879999880907999999999999999999869999999999998602257899999999988499829999999
Q ss_pred HHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98679343225567770778778999998511024678888889999873332010021012321025542223334455
Q gi|254780974|r 81 AEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMA 160 (435)
Q Consensus 81 ~~~~g~~~~~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~ 160 (435)
.++||++++|||||+|||||+||++.|++|+++..+.++|..+.++|.++|.+|++|+|+||||+|||+|||||+|+++|
T Consensus 81 ~~~~g~~a~~vH~GaTSqDi~DTa~~L~lk~a~~~i~~~l~~l~~~L~~lA~~~~~t~m~GRTh~Q~A~P~TfG~k~a~w 160 (433)
T PRK07492 81 AEFVGPDARFVHQGMTSSDVLDTCLNVQLVRAADLLLADLDRVLAALKKRAFEHKDTPTIGRSHGIHAEPTTFGLKLARF 160 (433)
T ss_pred HHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 98647000413435317868864999999999999999999999999999998556756688657831001799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43100014889998643101001112222246646678865542257876635202333334567788877644688999
Q gi|254780974|r 161 YAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVA 240 (435)
Q Consensus 161 ~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~~l~~~~~~l~kia 240 (435)
+++|.|+.+||.++.+++.++++||||||+++.+|.+++.+++.|||..+|.++|+++||++++++++|++++++|+|||
T Consensus 161 ~~~l~r~~~RL~~~~~~~~~~~l~GAvGt~a~~~~~v~~~~a~~LGL~~~~~~~q~~~RD~~~e~~~~La~i~~~l~kia 240 (433)
T PRK07492 161 YAEFSRNRERLVAAREEIATCAISGAVGTFANIDPRVEEHVAKKLGLKPEPVSTQVIPRDRHAMFFATLGVIASSIERLA 240 (433)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999987510111440136656888999999886188889876665642579999999999998799999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHCCCCHH
Q ss_conf 99999516787600025644654201232102415678775211233431002354311431354321015554172045
Q gi|254780974|r 241 TEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVIGPDAT 320 (435)
Q Consensus 241 ~Dl~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~ 320 (435)
+|+++|+++||||+.|||.+||+|||+|||||||+.+|.++++++.++|++.++++++++|||||+++|..||.++|+++
T Consensus 241 ~di~~l~~~ei~Ev~E~f~~gq~GSSaMPhKrNPv~~E~i~~lar~v~~~~~~~~~~~~~~hERd~~~s~~er~~lpd~~ 320 (433)
T PRK07492 241 IEIRHLQRTEVLEAEEYFSPGQKGSSAMPHKRNPVLTENLTGLARLVRSYVIPAMENVALWHERDISHSSVERMIGPDAT 320 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999886667788721468998766688563849999999999999876778988627764201535377888877799
Q ss_pred HHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCH
Q ss_conf 78999999987423100437357999986445837899999999872999899999999999999981999899985074
Q gi|254780974|r 321 IHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADV 400 (435)
Q Consensus 321 ~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~l~~d~ 400 (435)
.++++++..+..+++||+||++||++||+.++|+++||++|++|+++|+||++||++|++++.++.++|++|+|++.+|+
T Consensus 321 ~~~~~~l~~~~~ll~~L~V~~~rM~~Nl~~~~g~i~se~v~~~L~~~g~gR~~Ah~~V~~~a~~a~~~~~~l~e~l~~d~ 400 (433)
T PRK07492 321 ITLDFALNRLAGVIEKLVVYPENMLKNLNKLGGLVHSQRVLLALTQAGVSREDAYRLVQRNAMKVWEQGGDFLEELKADP 400 (433)
T ss_pred HHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCH
T ss_conf 99999999999866414787999999998806877999999999886998899999999999999987979999987196
Q ss_pred HHHCCCCHHHHHHHCCHHHHHCCHHHHHHHHHH
Q ss_conf 323059989999851889885019999999885
Q gi|254780974|r 401 DIRKVLSEKEICDKFDYKYHTKHVNAIFERVFQ 433 (435)
Q Consensus 401 ~i~~~l~~~eL~~~ldP~~~~g~a~~i~d~vl~ 433 (435)
.+..+|+++||+++|||++|+|+++.|+|||+.
T Consensus 401 ~v~~~l~~~el~~~~dp~~yl~~~~~i~~rV~g 433 (433)
T PRK07492 401 EVRAALSEEEIEELFDLGYHTKHVDTIFKRVFG 433 (433)
T ss_pred HHHHHCCHHHHHHHHCHHHHHHHHHHHHHHCCC
T ss_conf 988409999999871979999858999987149
No 2
>PRK08470 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=882.76 Aligned_cols=430 Identities=55% Similarity=0.888 Sum_probs=419.2
Q ss_pred CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 98874987888727958899999999999999977768999899999998300127898999988746378547999999
Q gi|254780974|r 1 MIPRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHL 80 (435)
Q Consensus 1 m~~ry~~~e~~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~a~~~~l 80 (435)
||+||+++||+.||||++++++|++||.|+|+||+++|+||++++++|.+.+ .+|++++.+.++.++|||+||++.+
T Consensus 1 mi~Ry~~~em~~ifs~e~~~~~~l~vE~ala~Aqa~lG~IP~~aa~~I~~~~---~~d~~~i~~~e~~t~hdvia~v~~l 77 (442)
T PRK08470 1 MVERYAREEMAKKWTMQAKYDAWLEVEKAAVKAWNKLGLIPDSDCEKICKNA---KFDIARIDEIEKTTKHDLIAFLTSV 77 (442)
T ss_pred CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC---CCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9864287999988393899999999999999999876999999999999857---9999999999998599829999999
Q ss_pred HHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98679343225567770778778999998511024678888889999873332010021012321025542223334455
Q gi|254780974|r 81 AEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMA 160 (435)
Q Consensus 81 ~~~~g~~~~~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~ 160 (435)
.+.||++++|||||+|||||+||++.|++|+++..+.++|..++.+|.++|.+|++|+|+||||+|||+|||||+|+++|
T Consensus 78 ~~~~g~~~~~vH~GaTSqDi~DTa~~L~lk~al~~i~~~l~~l~~~L~~lA~~~k~t~m~GRTh~q~A~PiTfG~k~a~w 157 (442)
T PRK08470 78 SESLGEESRFVHYGMTSSDCIDTAVALQMKDSLKLIIEDVKNLMEAIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIW 157 (442)
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 98566122700148578649999999999999999999999999999999998566735551065654046778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43100014889998643101001112222246646678865542257876635202333334567788877644688999
Q gi|254780974|r 161 YAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVA 240 (435)
Q Consensus 161 ~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~~l~~~~~~l~kia 240 (435)
+++|.|+++||.++.+++..+++||||||+++.++.+++.+|+.|||++.|+++|+++||++++++++|++++++|+|||
T Consensus 158 ~~~l~r~~~rL~~~~~~~~~g~~~GAvGt~a~~~~~v~~~~a~~LGL~~~p~~~q~~~Rd~~ae~~~~La~ia~sl~Kia 237 (442)
T PRK08470 158 YDEIKRHLKLLEHTMEVISVGKISGAMGNFAHAPLELEELVCEELGLKPAPVSNQVIQRDRYARLASALALLASSCEKIA 237 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89988899999999876420220112144577857999999996899988752302021089999999999998899999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHCCCCHH
Q ss_conf 99999516787600025644654201232102415678775211233431002354311431354321015554172045
Q gi|254780974|r 241 TEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVIGPDAT 320 (435)
Q Consensus 241 ~Dl~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~ 320 (435)
+|+++|+++|+||+.|||.++|+|||+|||||||+.+|.++++|+.+++++.++++++.+|||||+++|..||+++|++|
T Consensus 238 ~di~~l~~tev~Ev~E~f~~gq~GSSaMPhKrNPi~~E~i~~lar~~r~~~~~~~e~~~~~hERd~~~s~~Er~~lpd~~ 317 (442)
T PRK08470 238 VNIRHLQRTEVYEAEEYFSPGQKGSSAMPHKRNPVLSENITGLCRVIRSFVTPALENVALWHERDISHSSVERFILPDAF 317 (442)
T ss_pred HHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99998612563245235689898537788550749899999999877876789998617862768740176887899999
Q ss_pred HHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC-----------
Q ss_conf 789999999874231004373579999864458378999999998729998999999999999999819-----------
Q gi|254780974|r 321 IHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNG----------- 389 (435)
Q Consensus 321 ~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~~~~----------- 389 (435)
.++++++..+..+++||+||++||++||+.++|+++||++|++|+++|+||++||++|+++++++.++.
T Consensus 318 ~l~~~~l~~~~~vl~~L~V~~~rM~~NL~~t~gli~se~vm~~L~~~G~~R~~Ah~~V~~~a~~~~~~~~~~~~~~~~~~ 397 (442)
T PRK08470 318 ITADFMLSRLNNVIENLVVYPENMMKNLNLTGGLVFSQRVLLELPKKGVSREDAYKIVQRNAMKVWEDLQQGKAAINEKG 397 (442)
T ss_pred HHHHHHHHHHHHHHCCCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999876037886899999999866827999999999887999999999999999999997541103442024
Q ss_pred -CCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHCCHHHHHHHHHH
Q ss_conf -99899985074323059989999851889885019999999885
Q gi|254780974|r 390 -AIFLDVLLADVDIRKVLSEKEICDKFDYKYHTKHVNAIFERVFQ 433 (435)
Q Consensus 390 -~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g~a~~i~d~vl~ 433 (435)
..|+|.+.+|+.+..+|+++||+++|||.+|+|++++|+|||||
T Consensus 398 ~~~f~~~l~~d~~v~~~ls~~el~~l~dp~~yl~~~~~i~~rvlk 442 (442)
T PRK08470 398 ESLFLQALLNDEELRKSLSEEEIRACFDYSYYTKNVDAIFKRVFK 442 (442)
T ss_pred CCHHHHHHHCCHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_conf 305899987497988039999999871989998728899998619
No 3
>PRK07380 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=882.05 Aligned_cols=428 Identities=51% Similarity=0.852 Sum_probs=420.5
Q ss_pred CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 98874987888727958899999999999999977768999899999998300127898999988746378547999999
Q gi|254780974|r 1 MIPRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHL 80 (435)
Q Consensus 1 m~~ry~~~e~~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~a~~~~l 80 (435)
||+||++|||+.||||++++++|++||.|+|++|+++|+||++++++|.+++ .+|++++.+.++.++|||++|++.+
T Consensus 1 mi~RY~~~em~~ifsd~~~~~~~l~vE~Ala~aqa~lG~IP~~aa~~I~~~~---~~d~~~i~~~e~~~~h~v~a~v~~l 77 (431)
T PRK07380 1 MIERYTLPEMGNIWTDTAKFQTWLDVEIAACEAQAELGKIPEEAVEEIKAKA---NFDPQRILEIEAEVRHDVIAFLTNV 77 (431)
T ss_pred CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC---CCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9876487999987393899999999999999999876999999999999866---9999999999987298979999999
Q ss_pred HHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98679343225567770778778999998511024678888889999873332010021012321025542223334455
Q gi|254780974|r 81 AEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMA 160 (435)
Q Consensus 81 ~~~~g~~~~~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~ 160 (435)
.+.||+.++|||||+|||||+||++.|++|+++..+.++|.+++.+|..+|.+|++|+|+||||+|||+|||||+|+++|
T Consensus 78 ~~~~g~~~~~vH~GaTSqDI~DTa~~L~lr~al~~i~~~L~~l~~~L~~la~~~~~t~m~GRTh~q~A~PiTfG~k~a~w 157 (431)
T PRK07380 78 NEYVGDAGRYIHLGMTSSDVLDTGLALQLKASVDLLLEELEDLIQAIRYLAREHRNTVMIGRSHGIHAEPITFGFKLAGW 157 (431)
T ss_pred HHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 98563011825548677437877999999999999999999999999999998279743578634625115899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43100014889998643101001112222246646678865542257876635202333334567788877644688999
Q gi|254780974|r 161 YAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVA 240 (435)
Q Consensus 161 ~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~~l~~~~~~l~kia 240 (435)
.++|.|+++||.++++++.++++||||||+++.+|.+++.+++.|||.+++.++|+.+||++++++++|++++++|+|||
T Consensus 158 ~~~l~r~~~RL~~~~~~~~~~~l~GAvGt~a~~~~~~e~~~~~~LgL~~~~~~~q~~~Rd~~ae~~~~La~i~~~l~kia 237 (431)
T PRK07380 158 LAETLRNRERLVRLREDVAVGQISGAVGTYANTDPRVEAITCQKLGLKPDTASTQVISRDRHAEYVQTLALVGASLERFA 237 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999985312101311244220250899999997699999986772071999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHCCCCHH
Q ss_conf 99999516787600025644654201232102415678775211233431002354311431354321015554172045
Q gi|254780974|r 241 TEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVIGPDAT 320 (435)
Q Consensus 241 ~Dl~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~ 320 (435)
+||++|+++|+|||.|||..||+|||+|||||||+.||.++++++.+++++.++++++.+|||||+++|+.||.++|+++
T Consensus 238 ~di~~l~~~ei~Ev~E~~~~gq~GSStMPhKrNPi~~E~i~~lar~~r~~~~~~l~~~~~~hERD~~~s~~Er~~lp~~~ 317 (431)
T PRK07380 238 TEIRNLQRTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLSGLARVLRSYVVAALENVALWHERDISHSSVERVMLPDCS 317 (431)
T ss_pred HHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999871686336315689989128878562858899999999988875788997508860678243454786788999
Q ss_pred HHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HCCCCHHHHHHCC
Q ss_conf 789999999874231004373579999864458378999999998729998999999999999999-8199989998507
Q gi|254780974|r 321 IHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVW-KNGAIFLDVLLAD 399 (435)
Q Consensus 321 ~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~-~~~~~l~e~l~~d 399 (435)
.++++++..+..+++||+||++||++||+.++|+++||++|++|+++|+||++||++|+++++++. .++++|+|++.+|
T Consensus 318 ~~~~~~l~~~~~ll~~L~V~~~~M~~Nl~~~~gli~se~vm~~L~~~g~gR~~Ah~~v~~~a~~a~~~e~~~l~e~l~~d 397 (431)
T PRK07380 318 ILLHFMLREMTDLVKNLGVYPENMRRNMNIYGGVVFSQRVLLALVEKGMSREEAYRLVQKNAHQAWNTEGGNFRANLEAD 397 (431)
T ss_pred HHHHHHHHHHHHHHCCCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
T ss_conf 99999999999986068897999999998827878999999999886998899999999999999986499889998739
Q ss_pred HHHHCCCCHHHHHHHCCHHHHHCCHHHHHHHH
Q ss_conf 43230599899998518898850199999998
Q gi|254780974|r 400 VDIRKVLSEKEICDKFDYKYHTKHVNAIFERV 431 (435)
Q Consensus 400 ~~i~~~l~~~eL~~~ldP~~~~g~a~~i~d~v 431 (435)
+.+..+|+++||+++|||++|+|+++.|+|||
T Consensus 398 ~~v~~~ls~~ei~~~~dP~~ylg~~~~i~~Rv 429 (431)
T PRK07380 398 PEVTALLSAEELADCFDPQLHLKNLDVIWQRL 429 (431)
T ss_pred HHHHHHCCHHHHHHHHCHHHHHHCHHHHHHHC
T ss_conf 69884199999998739898884734787842
No 4
>TIGR00928 purB adenylosuccinate lyase; InterPro: IPR004769 A number of enzymes, belonging to the lyase class, for which fumarate is a substrate have been shown , to share a short conserved sequence around a methionine which is probably involved in the catalytic activity of this type of enzymes. Adenylosuccinate lyase is involved in purine ribonucleotide biosynthesis.; GO: 0004018 adenylosuccinate lyase activity, 0009152 purine ribonucleotide biosynthetic process.
Probab=100.00 E-value=0 Score=869.67 Aligned_cols=432 Identities=48% Similarity=0.739 Sum_probs=424.2
Q ss_pred CCCCCC--CHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC-------CCCHHHHHHHHHH--HHHCCCCHHHHHHHHHHH
Q ss_conf 988749--87888727958899999999999999977768-------9998999999983--001278989999887463
Q gi|254780974|r 1 MIPRYS--RTTMTTLWSLETKFRIWFEIEAHACDALAKLG-------VIPEKSSKNIWEK--GRNAVFNVDRIMELDSII 69 (435)
Q Consensus 1 m~~ry~--~~e~~~ifs~~~~~~~~l~ve~A~a~a~~e~G-------~ip~~aa~~I~~~--~~~~~~d~~~~~~~~~~~ 69 (435)
|++||+ ++||+.|||++++++.|++||.|+++|++|+| .||.++.+.|.+. +.....|+++++++|+.+
T Consensus 1 ~~~RY~~~~~EM~~iWse~~k~~~~l~VE~a~~~A~a~lGP~I~~v~~i~~~~~~~~~~k~~a~~~~~~~~rikeIE~~t 80 (469)
T TIGR00928 1 LDERYGDKTPEMRAIWSEENKFKKWLDVEVALLRALAELGPVITEVPVIPAEAAKEIKEKIVASFDDVDLERIKEIEAVT 80 (469)
T ss_pred CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHCCCEEEECHHHHHHHHHHHHHH
T ss_conf 98765666635452206578999999999999999741087301046643889999857952631456688687763232
Q ss_pred CCCHHHHHHHHHHHCC------HHHCCCCCCCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 7854799999998679------343225567770778778999998511-024678888889999873332010021012
Q gi|254780974|r 70 KHDVIAFLTHLAEIIG------PDARFIHQGMTSSDILDTCFSIQLMRS-TDILLEDIDQLLESLKKRAFEYKDTLTIGR 142 (435)
Q Consensus 70 ~~~v~a~~~~l~~~~g------~~~~~iH~G~Ts~Di~~Ta~~l~~r~~-l~~l~~~l~~l~~~L~~~a~~~~~~~m~gr 142 (435)
+|||+|+++.|.|.|| +.++|||+|+|||||+|||..|+||++ +++|.+++.++++.|.++|.+|+||||+||
T Consensus 81 ~HDv~A~~~~l~E~~~~~~eL~~~~~~iH~G~TS~Di~Dta~aLllr~s~~~ii~~~l~~l~~~L~~~A~e~kd~~m~GR 160 (469)
T TIGR00928 81 KHDVKAVVKALAEKCGEAVELGAEGEYIHFGATSNDIVDTALALLLRDSRLEIILPKLKKLIDILKDKAEEHKDTVMLGR 160 (469)
T ss_pred CCHHHHHHHHHHHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 45299899899774000003222350153146444488878999999989998799999999999997653096788413
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH----------HHHHHHHHHCCCCCCCC
Q ss_conf 32102554222333445543100014889998643101001112222246646----------67886554225787663
Q gi|254780974|r 143 SHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIHP----------YVEQHVADAMGLKTDPI 212 (435)
Q Consensus 143 Th~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~~----------~~~~~~a~~LGl~~~~~ 212 (435)
||||||+|||||++|+.|++++.|+++||.++.+++.++++.||+||+++++| .+++++++.|||+..+.
T Consensus 161 THGq~A~PtT~G~~~A~w~~E~~R~~~rL~~~~~~~~vg~i~Ga~GT~a~~~~~~~G~~~~~~~~E~~V~~~LGL~~~~~ 240 (469)
T TIGR00928 161 THGQHAEPTTLGKKFALWADEMKRQLERLKQAKERIKVGGISGAVGTYAAAGPLGDGDRDWLEEVEERVTELLGLKPVPI 240 (469)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 57824344869999999999999999999988861665742254214762344578857999999999998708722567
Q ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 52-023333345677888776446889999999951678760002564-4654201232102415678775211233431
Q gi|254780974|r 213 SS-QVIARDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEVEEFFH-PGQKGSSSMPHKRNPILTENLTGLSRLIRSH 290 (435)
Q Consensus 213 ~~-~~~~rd~~~e~~~~l~~~~~~l~kia~Dl~~l~~~eigei~ep~~-~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~ 290 (435)
++ |+.+||++++++..|+.++++|.|||.|||.|+++|+.|+.|+|. .+|+|||+|||||||+.||+++|+++.++|+
T Consensus 241 stGQi~~RD~~a~~~~~LA~lA~~l~k~A~~iR~lq~~e~~ev~E~F~P~gQ~GSSaMPHKrNPI~~E~~~GlaRv~r~~ 320 (469)
T TIGR00928 241 STGQIIQRDRHAELLDALALLAATLEKFAVEIRLLQRTEVLEVEEKFGPKGQVGSSAMPHKRNPIDSERVCGLARVIRSY 320 (469)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 47620000456899999988604866864788997603620111024688887777888999884165565799999999
Q ss_pred CCHHHHHH-HHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 00235431-14313543210155541720457899999998742310043735799998644583789999999987299
Q gi|254780974|r 291 VIPAMENV-ALWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGV 369 (435)
Q Consensus 291 ~~~~~~~~-~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gi 369 (435)
+..++++. ++|||||+++|.+||++||++|.+++.+|..+.+++++|.|||++|++||+.++|+++|++||++|+++|+
T Consensus 321 ~~~~~~~~p~lW~ERDlt~SsveR~~Lp~~~~~~d~~L~~~~~~~~~L~vypeni~rnL~~~~gl~~~~~vl~~lv~~G~ 400 (469)
T TIGR00928 321 VIPALENVPVLWHERDLTDSSVERVILPDSFILADIILKTLLKVVKKLVVYPENIKRNLELTLGLIASERVLIALVERGM 400 (469)
T ss_pred HHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999708985002531111367888658999999999998756750340688999873002660022589999963158
Q ss_pred CHHHHHHHHHHHHHHHHH------CCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHCCHHHHHHHHH
Q ss_conf 989999999999999998------199989998507432305998999985188988501999999988
Q gi|254780974|r 370 SREEAYQLVQRNAMKVWK------NGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTKHVNAIFERVF 432 (435)
Q Consensus 370 g~~~Ah~~v~~~a~~a~~------~~~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g~a~~i~d~vl 432 (435)
||++||++|++++++|.+ ++.+|+|.+.+|+.+..+++++|+++++||++|+|.++.+||||.
T Consensus 401 gRe~aye~v~~~A~~a~~v~~e~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~P~~y~G~a~~~ve~v~ 469 (469)
T TIGR00928 401 GREEAYEIVRELAMKAAEVLKEEVEERDLLEFLLEDEEITKYLTEEELAELLDPETYIGNAREIVERVV 469 (469)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCHHHHHHHCC
T ss_conf 850168999999999999997316723689999727456612586899985093665144455543039
No 5
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=0 Score=849.63 Aligned_cols=431 Identities=27% Similarity=0.354 Sum_probs=419.1
Q ss_pred CCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 87498788872795889999999999999997776899989999999830012789899998874637854799999998
Q gi|254780974|r 3 PRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHLAE 82 (435)
Q Consensus 3 ~ry~~~e~~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~a~~~~l~~ 82 (435)
+||+++||+.||||++++++|++||.|+|++|+++|+||++++++|.++++...+|++++.+.++.++|||+++|..+.+
T Consensus 10 ~ry~~~em~~ifs~~~~~~~~l~vE~Ala~Aqa~lG~IP~~aa~~I~~~~~~~~~d~~~~~~~~~~~~h~vi~~V~~l~~ 89 (452)
T PRK09053 10 LYFGSPAMREIFSDRATVQRMLDFEAALARAEAACGVIPAAAVAPIEAACDAERLDLDALAQAAALAGNLAIPLVKQLTA 89 (452)
T ss_pred CCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 67687999988293899999999999999999876999999999999861444689999999998827874899999999
Q ss_pred HCC----HHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 679----3432255677707787789999985110246788888899998733320100210123210255422233344
Q gi|254780974|r 83 IIG----PDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLA 158 (435)
Q Consensus 83 ~~g----~~~~~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~ 158 (435)
.|+ +.++|||||+|||||+||++.|++|+++..|.++|..++.+|.++|++|++|+|+||||+|||+|||||+||+
T Consensus 90 ~~~~~~~~a~~~vH~GaTS~Di~DTa~~L~l~~al~~l~~~l~~l~~~L~~lA~~~~~t~m~GRTH~Q~A~P~TfG~k~a 169 (452)
T PRK09053 90 QVAARDAEAARYVHWGATSQDIIDTGLVLQLRDALDLLEPDLDRLCAALATLAARHRATPMIGRTWLQQALPVTLGLKFA 169 (452)
T ss_pred HHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 87302752011115787674599999999999999999999999999999999986277200201478673313999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 554310001488999864310100111222224664---66788655422578766352023333345677888776446
Q gi|254780974|r 159 MAYAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIH---PYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASS 235 (435)
Q Consensus 159 ~~~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~---~~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~~l~~~~~~ 235 (435)
+|+++|.|+++||.++++++..+++||||||+++++ +.+.+.+++.|||..+ ..+|+++||++++++++|++++++
T Consensus 170 ~w~~~l~r~~~rL~~~~~~~~~~~lgGAvGt~a~~~~~~~~v~~~la~~Lgl~~~-~~~~~~~rd~~~e~~~~L~~ia~~ 248 (452)
T PRK09053 170 GWLDALLRHRQRLAALRPRALVLQFGGAAGTLASLGERALAVAQALAEELQLALP-ALPWHTQRDRIVEFASALGLLAGT 248 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999998888713774464446775409999999998689988-887521359999999999999988
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHC
Q ss_conf 88999999995167876000256446542012321024156787752112334310023543114313543210155541
Q gi|254780974|r 236 IERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVI 315 (435)
Q Consensus 236 l~kia~Dl~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~ 315 (435)
|+|||+||++|+++|+||+.|||.++|+||||||||+||+.+|.++++|++++|++.++++++.+|||||+++|..||.+
T Consensus 249 l~kia~Dirll~~~eigEl~E~~~~~q~GSS~MPhK~NPv~~E~i~~lar~v~~~~~~~~~~~~~~hERd~~~~~~e~~~ 328 (452)
T PRK09053 249 LGKIARDVSLLMQTEVGEVFEPAAAGKGGSSTMPHKRNPVGCAAVLTAATRAPGLVATLFAAMVQEHERALGGWHAEWDT 328 (452)
T ss_pred HHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99999999998607657452567899987577887616698999999999999769999987477512244227899999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 72045789999999874231004373579999864458378999999998729998999999999999999819998999
Q gi|254780974|r 316 GPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDV 395 (435)
Q Consensus 316 l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~ 395 (435)
+|+++.++++++..+.++++||+||+++|++||+.++|+++||.+|++|+++ +||++||++|+++++++.++|++|+|+
T Consensus 329 lp~~~~l~~~~l~~~~~~l~gL~v~~~~M~~nL~~~~gli~sE~v~~aL~~~-~Gr~~Ahe~V~~~a~~A~~~~~~l~e~ 407 (452)
T PRK09053 329 LPELACLAAGALAQMAQIVEGLEVDAARMRANLDLTHGLILAEAVMLALADR-IGRLDAHHLVEQASKRAVAQGRHLRDV 407 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 9999999999999999998538777999999998715678899999998861-799999999999999999979889999
Q ss_pred HHCCHHHHCCCCHHHHHHHCCHHHHHCCHHHHHHHHHHHC
Q ss_conf 8507432305998999985188988501999999988519
Q gi|254780974|r 396 LLADVDIRKVLSEKEICDKFDYKYHTKHVNAIFERVFQMF 435 (435)
Q Consensus 396 l~~d~~i~~~l~~~eL~~~ldP~~~~g~a~~i~d~vl~~y 435 (435)
+.+|+.+.+.|+++||+++|||++|+|+++++|||||.-|
T Consensus 408 l~~d~~v~~~Ls~~eld~lldP~~ylG~a~~~vdrvla~~ 447 (452)
T PRK09053 408 LAEDPQVSAHLSPAALDRLLDPAHYLGQARAWVDRVLAEH 447 (452)
T ss_pred HHCCHHHHCCCCHHHHHHHHCHHHHHCCHHHHHHHHHHHH
T ss_conf 8719486634999999988299977085499999999986
No 6
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=833.59 Aligned_cols=433 Identities=48% Similarity=0.707 Sum_probs=426.4
Q ss_pred CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 98874987888727958899999999999999977768999899999998300127898999988746378547999999
Q gi|254780974|r 1 MIPRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHL 80 (435)
Q Consensus 1 m~~ry~~~e~~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~a~~~~l 80 (435)
|+.||+++||++|||+++++++|++||.|+++||+++|+||+++++.|.+++....+|+++++++++.++|||+|+++.|
T Consensus 1 ~~~RY~~~em~~ifS~~~~~~~~l~vE~ala~A~aelG~Ip~~a~~~I~~~~~~~~~d~~~i~eie~~t~HdV~a~v~~l 80 (438)
T COG0015 1 LDGRYSSPEMRAIFSEEAKLRAWLKVEAALARAQAELGVIPAEAAAEIDAAAAFAEFDLERIKEIEAETGHDVKALVRAL 80 (438)
T ss_pred CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 98552768999874877899999999999999988709998999999998732031579999999998588859999999
Q ss_pred HHHCC-HHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98679-34322556777077877899999851102467888888999987333201002101232102554222333445
Q gi|254780974|r 81 AEIIG-PDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAM 159 (435)
Q Consensus 81 ~~~~g-~~~~~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~ 159 (435)
.++|| +.++|||+|+|||||+||+..|++|+++++|.+++..+++.|..+|.+|++|||+||||+|||+|||||+++++
T Consensus 81 ~e~~~~~~~~~VH~GaTS~DI~Dta~~L~lk~a~~ii~~~l~~l~~~L~~~A~~~k~t~m~GRTHgq~A~PtT~G~k~A~ 160 (438)
T COG0015 81 AEKVGEEASEYVHFGATSQDIIDTALALQLKEALDLILPDLKRLIEALAELALEHKDTPMLGRTHGQPAEPTTFGKKFAN 160 (438)
T ss_pred HHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHH
T ss_conf 98656212362450666688885899999999999999999999999999999827881112346777754019999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH---HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 543100014889998643101001112222246646---67886554225787663520233333456778887764468
Q gi|254780974|r 160 AYAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIHP---YVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSI 236 (435)
Q Consensus 160 ~~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~~---~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~~l~~~~~~l 236 (435)
|++++.|+++||.++.+++..+++|||+||+++++| .+++++++.|||...|.++||.+||++++++++|+.+++++
T Consensus 161 w~~el~R~~~rL~~~~~~~~~g~i~Ga~Gt~Aa~~~~~~~ve~~v~e~LGL~~~p~stq~~~RD~~ae~~~~La~i~~sl 240 (438)
T COG0015 161 WLAELLRHLERLEEAEERIIVGKIGGAVGTLAALGDLGAEVEERVAEKLGLKPAPISTQVSPRDRIAEFFSALALLAGSL 240 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999985335301266322186358405899999999869999988765065368999999999999879
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHCC
Q ss_conf 89999999951678760002564465420123210241567877521123343100235431143135432101555417
Q gi|254780974|r 237 ERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVIG 316 (435)
Q Consensus 237 ~kia~Dl~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l 316 (435)
.||+.||++|+++|++||.|||.+||+|||+|||||||+.||++.++++.+++++.++++++.+|||||+++|.+||+.+
T Consensus 241 ~k~a~dIr~l~~~e~~Ev~E~f~~gq~GSSaMPHKrNPi~~E~~~glar~~r~~~~~~~e~~~~whERdlt~ssver~~L 320 (438)
T COG0015 241 EKFARDIRLLQRTEVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARALVSTLLENLVLWHERDLTDSSVERVIL 320 (438)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99999999987137430013467899877878746682888999999999999899999986888723562047888788
Q ss_pred CCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 20457899999998742310043735799998644583789999999987299989999999999999998199989998
Q gi|254780974|r 317 PDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVL 396 (435)
Q Consensus 317 ~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~l 396 (435)
|++|.+++.+|..+..++++|.||+++|++||+.++|+++||.+|++|+++|+||++||++|++.++.+.++++++.+.+
T Consensus 321 p~~~~~~~~aL~~~~~vl~~L~v~~~~m~~nL~~~~gli~se~v~~~l~~~g~~Re~a~elvr~~a~~~~~~~~~~~~~~ 400 (438)
T COG0015 321 PDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASERVMLALRKKGMGREEAHELVREKAMKAWEQGKEFLELL 400 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 89999999999999999975766799999887432452643999999886489899999999999999998503268886
Q ss_pred HCCHHHHCCCCHHHHHHHCCHHHHHCCHHHHHHHHHH
Q ss_conf 5074323059989999851889885019999999885
Q gi|254780974|r 397 LADVDIRKVLSEKEICDKFDYKYHTKHVNAIFERVFQ 433 (435)
Q Consensus 397 ~~d~~i~~~l~~~eL~~~ldP~~~~g~a~~i~d~vl~ 433 (435)
++++.+.+++++++++++|||.+|+|.++++++|++.
T Consensus 401 l~~~~v~~~~~~~~~~~~~dp~~y~G~a~~i~~r~~~ 437 (438)
T COG0015 401 LADERVTKYLSEEELLELLDPANYLGRADEIVERVVK 437 (438)
T ss_pred CCCHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 1342533237688998717998875569999998742
No 7
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=100.00 E-value=0 Score=824.54 Aligned_cols=433 Identities=40% Similarity=0.624 Sum_probs=421.3
Q ss_pred CCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 87498788872795889999999999999997776899989999999830012789899998874637854799999998
Q gi|254780974|r 3 PRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHLAE 82 (435)
Q Consensus 3 ~ry~~~e~~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~a~~~~l~~ 82 (435)
.||+++||+.||||++++++|++||.|+|++|+++|+||++++++|.+++....+|++++++.++.++|||+++++.+.+
T Consensus 8 ~RY~~~em~~ifse~~~~~~~l~vE~ala~a~~~~g~ip~~~a~~i~~~~~~~~~d~~~i~~~e~~~~hdv~a~v~~l~e 87 (449)
T PRK08540 8 YRYGTPEMKRVWSEENKLQKMLEVEAALARAEAELGMIPKEAAEEINEKASTKSVKLERVKEIEAEIHHDIMAVVKAISE 87 (449)
T ss_pred CCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 66598999987098999999999999999999874999999999999864544478999999999848982999999998
Q ss_pred HCCHH-HCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67934-32255677707787789999985110246788888899998733320100210123210255422233344554
Q gi|254780974|r 83 IIGPD-ARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAY 161 (435)
Q Consensus 83 ~~g~~-~~~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~ 161 (435)
.|+++ |+|||||+|||||+||+++|++|+++..+.++|..++++|.++|++|++|+|+||||+|||+||||||+|++|+
T Consensus 88 ~~~~~~~~~vH~G~Ts~Di~dTa~~L~~~~~~~~i~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~ 167 (449)
T PRK08540 88 VCEGDAGEYVHFGATSNDIIDTATALQLKDSLDILEEKLKTLLGVLLDKAEEHKNTVCIGRTHGQHAVPTTYGMKFAIWA 167 (449)
T ss_pred HCCHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEHHHHHHHHHHH
T ss_conf 64424003044287788789889999999999999999999999999999982698620567884103316999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 310001488999864310100111222224664---66788655422578766352023333345677888776446889
Q gi|254780974|r 162 AEFSRSRKRLLTAREEIAVCAISGSVGTFSNIH---PYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIER 238 (435)
Q Consensus 162 ~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~---~~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~~l~~~~~~l~k 238 (435)
++|.|+++||.+++++++.+++||||||+++++ +.+++++++.|||+.++.++|+.+||++++++++|++++++|+|
T Consensus 168 ~~l~r~~~rl~~~~~~~~~~~~~GAvGt~a~~~~~~~~~~~~~~~~Lgl~~~~~~~~~~~rd~~~e~~~~l~~ia~~l~k 247 (449)
T PRK08540 168 SEIQRHIERLEQLKPRVCVGQMTGAVGTQAAFGEKGIEIQKRVMEILGLGPVDISNQVIQRDRHAEFMMFLANIASTLDK 247 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999988741235876640016974599999999983899778643212300799999999998736999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHCCCC
Q ss_conf 99999995167876000256446542012321024156787752112334310023543114313543210155541720
Q gi|254780974|r 239 VATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVIGPD 318 (435)
Q Consensus 239 ia~Dl~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~ 318 (435)
||+|+++|+++||||+.|||+.+|+||||||||+||+.+|.++++++.+++++...+.++.+|||||++.|..+|+++|+
T Consensus 248 ia~Di~~l~~~e~ge~~e~~~~~~~GSS~MPhK~NPv~~E~i~gla~~~~~~~~~~l~~~~~~~erDl~~~~~e~~~l~~ 327 (449)
T PRK08540 248 IGLEIRSLQRTEIGEVEESFGKKQVGSSTMPHKRNPITSEQVCGLARVVRSNVEPALLNNPLWDERDLTNSSCERVIFPE 327 (449)
T ss_pred HHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999997523457030478999971388898728546898999999999888998725741001010124788886799
Q ss_pred HHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 45789999999874231004373579999864458378999999998729998999999999999999819998999850
Q gi|254780974|r 319 ATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLA 398 (435)
Q Consensus 319 ~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~l~~ 398 (435)
++.++++++..+..++++|+||++||++|++.++|+++||.+++.|+++|+||++||++|++++++|.++|++|.|++.+
T Consensus 328 ~~~l~~~~l~~~~~~l~~l~vn~erm~~nl~~~~~~i~ae~l~~~L~~~glg~~~Ahe~v~~~a~~A~~~g~~l~e~~l~ 407 (449)
T PRK08540 328 SCVLTDHILKLMIKVLEGLEFNPENIRRNLELTKGLNMAERVMIELAKRGMGRQEAHELVRQAAMKAFEEGRHLKEVLLE 407 (449)
T ss_pred HHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHC
T ss_conf 99999999999998775183569999999885517766899999999859987999999999999999969989999865
Q ss_pred CHHHHCCCCHHHHHHHCCHHHHHCCHHHHHHHHHHHC
Q ss_conf 7432305998999985188988501999999988519
Q gi|254780974|r 399 DVDIRKVLSEKEICDKFDYKYHTKHVNAIFERVFQMF 435 (435)
Q Consensus 399 d~~i~~~l~~~eL~~~ldP~~~~g~a~~i~d~vl~~y 435 (435)
++.+..+++++|++++|||++|+|.|++++|||++.+
T Consensus 408 ~~~~~~~l~~~el~~lldP~~yiG~A~~~v~~vl~~~ 444 (449)
T PRK08540 408 EPEVMKYLTEEEIEELLDPETYIGTAPEIVENVIEKL 444 (449)
T ss_pred CHHHHCCCCHHHHHHHCCHHHHCCCHHHHHHHHHHHH
T ss_conf 8553168999999986699871684899999999999
No 8
>cd01597 pCLME pCLME: prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like This group contains proteins similar to pCLME, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=100.00 E-value=0 Score=819.75 Aligned_cols=430 Identities=30% Similarity=0.451 Sum_probs=418.3
Q ss_pred CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 88749878887279588999999999999999777689998999999983001278989999887463785479999999
Q gi|254780974|r 2 IPRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHLA 81 (435)
Q Consensus 2 ~~ry~~~e~~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~a~~~~l~ 81 (435)
.+||+++||+.||||+++|++|+.||+|+|++|+++|+||++++++|.++|+...+|+++++.+++.++|||+++++.+.
T Consensus 3 ~~~y~~~e~~~i~s~~~~i~~~~~ve~A~A~a~~~lG~ip~~~a~~I~~a~~~~~~d~~~~~~~~~~~~~~v~a~v~~l~ 82 (437)
T cd01597 3 GDLFGTPAMREIFSDENRVQAMLDVEAALARAQAELGVIPKEAAAEIAAAADVERLDLEALAEATARTGHPAIPLVKQLT 82 (437)
T ss_pred CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 43338899998729199999999999999999987699999999999987276467999999999872882899999999
Q ss_pred HHCCHH-HCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 867934-3225567770778778999998511024678888889999873332010021012321025542223334455
Q gi|254780974|r 82 EIIGPD-ARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMA 160 (435)
Q Consensus 82 ~~~g~~-~~~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~ 160 (435)
+.+|+. ++|||+|+||||++||+++|++|+++..+.+.+..++++|.++|++|++|+|+||||+|||+||||||+|++|
T Consensus 83 ~~~~~~~g~~vH~G~TsnDv~~Ta~~l~l~~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTH~Q~A~P~T~G~~~~~~ 162 (437)
T cd01597 83 AACGDAAGEYVHWGATTQDIIDTALVLQLRDALDLLERDLDALLDALARLAATHRDTPMVGRTHLQHALPITFGLKVAVW 162 (437)
T ss_pred HHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEECHHHHHHHHH
T ss_conf 85681302755799785313866999999988999999999999999999998259820144467413434199999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4310001488999864310100111222224664---6678865542257876635202333334567788877644688
Q gi|254780974|r 161 YAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIH---PYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIE 237 (435)
Q Consensus 161 ~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~---~~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~~l~~~~~~l~ 237 (435)
+++|.|+++||.+++++++.+|+||||||+++.+ +.+++++++.|||..++. +|+++||++++++++++.++++|+
T Consensus 163 ~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~~~~a~~Lgl~~~~~-~~~~~rd~~~e~~~~l~~la~~L~ 241 (437)
T cd01597 163 LSELLRHRERLDELRPRVLVVQFGGAAGTLASLGDQGLAVQEALAAELGLGVPAI-PWHTARDRIAELASFLALLTGTLG 241 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999776435676645454578637999999999948999998-654353899999999999988899
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHCCC
Q ss_conf 99999999516787600025644654201232102415678775211233431002354311431354321015554172
Q gi|254780974|r 238 RVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVIGP 317 (435)
Q Consensus 238 kia~Dl~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~ 317 (435)
|||+|+++|+++|||||.||+..+|+||||||||+||+.+|.+++++++++|+..+++.++.+|||||...|..+|..+|
T Consensus 242 kia~Di~ll~~~~~gei~~p~~~~~~GSS~MP~K~NPv~~E~v~~~a~~v~g~~~~~~~~~~~~~Erd~~~~~~~~~~l~ 321 (437)
T cd01597 242 KIARDVYLLMQTEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIVALARRVPGLAALLLDAMVQEHERDAGAWHAEWIALP 321 (437)
T ss_pred HHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99999999987433042154358998878889987978899999999999877999998767542105462577898899
Q ss_pred CHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 04578999999987423100437357999986445837899999999872999899999999999999981999899985
Q gi|254780974|r 318 DATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLL 397 (435)
Q Consensus 318 ~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~l~ 397 (435)
+++.++++++..+..++++|+||++||++|++.++|+++||.++++|+++ +||++||++|++++++|.++|++++|++.
T Consensus 322 ~~~~l~~~~l~~~~~~l~~l~vn~erm~~nl~~~~~~i~ae~~~~~L~~~-ig~~~Ahe~v~~~a~~A~~~g~~l~e~~~ 400 (437)
T cd01597 322 EIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALAPK-LGRQEAHDLVYEACMRAVEEGRPLREVLL 400 (437)
T ss_pred HHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99999999999999875115355999999998562689899999998633-89899999999999999997988999986
Q ss_pred CCHHHHCCCCHHHHHHHCCHHHHHCCHHHHHHHHHH
Q ss_conf 074323059989999851889885019999999885
Q gi|254780974|r 398 ADVDIRKVLSEKEICDKFDYKYHTKHVNAIFERVFQ 433 (435)
Q Consensus 398 ~d~~i~~~l~~~eL~~~ldP~~~~g~a~~i~d~vl~ 433 (435)
+|..+.++|+++||+++|||++|+|.+++++||+++
T Consensus 401 ~d~~~~~~l~~~el~~lldP~~~iG~a~~~v~~~~~ 436 (437)
T cd01597 401 EDPEVAAYLSDEELDALLDPANYLGSAPALVDRVLA 436 (437)
T ss_pred CCHHHHCCCCHHHHHHHCCHHHHCCCHHHHHHHHHC
T ss_conf 485643799999999872998773968999999972
No 9
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase_2: Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=100.00 E-value=0 Score=811.46 Aligned_cols=417 Identities=25% Similarity=0.382 Sum_probs=396.1
Q ss_pred CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 988749878887279588999999999999999777689-9989999999830012789899998874637854799999
Q gi|254780974|r 1 MIPRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGV-IPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVIAFLTH 79 (435)
Q Consensus 1 m~~ry~~~e~~~ifs~~~~~~~~l~ve~A~a~a~~e~G~-ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~a~~~~ 79 (435)
||+||++|||+.||||+++++.|++||.|+|++|+++|+ ||++++++|.+.+ ..+|+++++++++.++|||+||++.
T Consensus 1 mi~RY~~~em~~ifS~e~~~~~~l~vE~ala~aqaelGi~i~~~a~~~i~a~~--~~~d~~~i~~~e~~t~Hdv~a~v~~ 78 (436)
T cd03302 1 LASRYASKEMVYIFSPRKKFSTWRKLWLWLAEAEKELGLDISDEQIEEMKANV--ENIDFEIAAAEEKKLRHDVMAHVHA 78 (436)
T ss_pred CCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC--CCCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf 98663869999881946999999999999999999829999999999999705--4489999999997719894899999
Q ss_pred HHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99867934322556777077877899999851102467888888999987333201002101232102554222333445
Q gi|254780974|r 80 LAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAM 159 (435)
Q Consensus 80 l~~~~g~~~~~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~ 159 (435)
+.+.||+.++|||||+|||||+||++.|++|++++++.++|..+..+|.++|.+|++|+|+||||+|||+|||||+|++.
T Consensus 79 l~~~~~~~~~~vH~G~TSqDI~DTa~~L~lk~al~~i~~~l~~l~~~L~~lA~~~~~t~m~gRTHgQ~A~PtTfG~k~a~ 158 (436)
T cd03302 79 FGLLCPAAAGIIHLGATSCFVTDNTDLIQIRDALDLILPKLAAVIDRLAEFALEYKDLPTLGFTHYQPAQLTTVGKRACL 158 (436)
T ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99857614471663754024577999999999999999999999999999999966873222006774400289999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-------C---HHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHH
Q ss_conf 5431000148899986431010011122222466-------4---6678865542257876-635202333334567788
Q gi|254780974|r 160 AYAEFSRSRKRLLTAREEIAVCAISGSVGTFSNI-------H---PYVEQHVADAMGLKTD-PISSQVIARDRHAMYFSV 228 (435)
Q Consensus 160 ~~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~-------~---~~~~~~~a~~LGl~~~-~~~~~~~~rd~~~e~~~~ 228 (435)
|+++|.|+++||.++.+++..+++||||||++++ + +.+++.+++.|||... |.++|+.+||++++++++
T Consensus 159 w~~el~r~~~rL~~~~~~~~~~~~~GAvGt~a~~~~~~~~~~~~~~~l~~~~a~~lgl~~~~~~~~q~~~Rd~~ae~~~~ 238 (436)
T cd03302 159 WIQDLLMDLRNLERLRDDLRFRGVKGTTGTQASFLDLFEGDHDKVEALDELVTKKAGFKKVYPVTGQTYSRKVDIDVLNA 238 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999999999996122213678733012045424674688999999999734887678885676873789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHCCCCC
Q ss_conf 87764468899999999516787600025644654201232102415678775211233431002354311-43135432
Q gi|254780974|r 229 LGVIASSIERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVA-LWHERDIS 307 (435)
Q Consensus 229 l~~~~~~l~kia~Dl~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~-~~~erd~~ 307 (435)
|++++++++|||+||++|++ +||+.|||.++|+|||+|||||||+.+|++++++++++|++.++++++. +|||||++
T Consensus 239 La~ia~~l~kia~di~~l~~--~~Ev~E~f~~gq~GSStMPHKrNPi~~E~i~~lar~~~~~~~~~~~~~~~~whERd~~ 316 (436)
T cd03302 239 LSSLGATAHKIATDIRLLAN--LKEVEEPFEKGQIGSSAMPYKRNPMRSERCCSLARHLMNLASNAAQTASTQWFERTLD 316 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHC--CCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999988999998815--9817530489998758777451759899999999999985689998755543346786
Q ss_pred CCHHHHHCCCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 10155541720457899999998742310043735799998644583789999999987299989999999999999998
Q gi|254780974|r 308 HSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWK 387 (435)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~~ 387 (435)
+|..||+++|++|.++++++..+.++++||+||+++|++||+.++|+++||++|++|+++|+||++||++|++++++|.+
T Consensus 317 ~s~~er~~lpe~~~l~~~~l~~~~~~l~~L~V~~~~M~~Nl~~~~gli~se~vm~~L~~~g~gR~~Ah~~V~~~a~~a~~ 396 (436)
T cd03302 317 DSANRRIAIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQELPFMATENIIMAAVKAGGDRQDAHERIRVLSHQAAA 396 (436)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 20899889889999999999999999807989899999999760688999999999987699999999999999999999
Q ss_pred CC------CCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHCC
Q ss_conf 19------9989998507432305998999985188988501
Q gi|254780974|r 388 NG------AIFLDVLLADVDIRKVLSEKEICDKFDYKYHTKH 423 (435)
Q Consensus 388 ~~------~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g~ 423 (435)
++ .+|.|.+.+|+.+. ++++||+++|||++|+|.
T Consensus 397 ~~~~~~~~~~l~e~~~~d~~~~--l~~~el~~lldP~~ylG~ 436 (436)
T cd03302 397 VVKQEGGDNDLIERIKNDAYFK--PIWDELDALLDPKTFIGR 436 (436)
T ss_pred HHHHCCCCCHHHHHHHCCCCCC--CCHHHHHHHHCHHHCCCC
T ss_conf 9885467612999975498779--999999986498843699
No 10
>PRK06390 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=811.46 Aligned_cols=431 Identities=35% Similarity=0.550 Sum_probs=416.8
Q ss_pred CCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 87498788872795889999999999999997776899989999999830012789899998874637854799999998
Q gi|254780974|r 3 PRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHLAE 82 (435)
Q Consensus 3 ~ry~~~e~~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~a~~~~l~~ 82 (435)
.||+++||+.||||++++++|++||.|++++|+++|+||++++++|.+.++...+|++++++.+++++|||+|+++.+.+
T Consensus 8 ~RY~~~em~~ifSe~~~~~~~l~vE~ala~aq~~~g~ip~~a~~~i~~~~~~~~~d~~~i~~~e~~t~hdv~a~v~~l~e 87 (451)
T PRK06390 8 YRYGRDQVKYIFDDENRLRYMLKVEAAIAKAEYEYGIIPRDAFLDIKNAVDSNSVRLERVREIESEIKHDVMALVEALSE 87 (451)
T ss_pred CCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 66588999987297899999999999999999883999989999999975515678999999975608985999999998
Q ss_pred HCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67934322556777077877899999851102467888888999987333201002101232102554222333445543
Q gi|254780974|r 83 IIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYA 162 (435)
Q Consensus 83 ~~g~~~~~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~~ 162 (435)
+||+.++|||||+|||||+||++.|++|+++..+.+++..+++.|..+|.+|++|+|+||||+|||+|||||+++++|++
T Consensus 88 ~~~~~~~~vH~G~TSqDI~Dta~~L~lk~a~~~i~~~l~~~~~~L~~lA~~h~~t~m~gRTHgQ~A~PtTfG~k~a~w~~ 167 (451)
T PRK06390 88 QCSAGKNYVHFGVTSNDINDTATALQIHDFVSIIKDDIKNLMETLIKLIDEYKDSPMMGRTHGQHASPITFGLKFAVYLD 167 (451)
T ss_pred HCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHH
T ss_conf 61345574651754642576899999999999999999999999999999851686423104762145179999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH---HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 100014889998643101001112222246646---67886554225787663520233333456778887764468899
Q gi|254780974|r 163 EFSRSRKRLLTAREEIAVCAISGSVGTFSNIHP---YVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERV 239 (435)
Q Consensus 163 ~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~~---~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~~l~~~~~~l~ki 239 (435)
+|.|+++||.++.++++.+++||||||+++.++ .+++++++.|||..++.++|+.+||++++++++|+.++++|+||
T Consensus 168 ~l~r~~~rL~~~~~~~~~~~~~GavGt~a~~~~~~~~v~~~~~~~LgL~~~~~~tq~~~rd~~~e~~~~l~~i~~~l~ki 247 (451)
T PRK06390 168 EMSRHLDRLTEMGDRAFAGKVLGPVGTGAALGKDALDIQNRVMEILGIYSEIGSTQIVNRDRYIEYLSVINGISVTLEKI 247 (451)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998898504466565201038637999999999818998874100013309999999999998999999
Q ss_pred HHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHCCCC
Q ss_conf 99999951678760002564-46542012321024156787752112334310023543114313543210155541720
Q gi|254780974|r 240 ATEIRHLQRTEILEVEEFFH-PGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVIGPD 318 (435)
Q Consensus 240 a~Dl~~l~~~eigei~ep~~-~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~ 318 (435)
|+|+++|+++|+||+.|||. .+++|||||||||||+.+|++.++++.+++++.+.+.++.+|||||+++|..+|..+|+
T Consensus 248 a~di~~l~~~ei~Ev~E~f~~~~~~GSStMPhK~NPi~~E~i~~la~~~~~~~~~~~~~~~~~~ERDl~~s~~er~~lp~ 327 (451)
T PRK06390 248 ATEIRNLQRPEIDEVSEYFDEESQVGSSSMPSKVNPINSENVVSLSRFIRSLIIPEYEAGVTWHERDLTNSALERFTIPY 327 (451)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999986678889988603358987777887638587899999999999747888763002004687234899988999
Q ss_pred HHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 45789999999874231004373579999864458378999999998729998999999999999999819998999850
Q gi|254780974|r 319 ATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLA 398 (435)
Q Consensus 319 ~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~l~~ 398 (435)
++.++++++..+..++++|+||+++|++||+. .+.++||.+++.|+++|+||++||++|+++++++.++|++|++.+.+
T Consensus 328 ~~~l~~~~l~~~~~~l~~L~vn~e~m~~nL~~-~~~i~sE~i~~~L~~~g~~r~~Ahe~v~~~~~~a~~~g~~l~e~l~~ 406 (451)
T PRK06390 328 ASILIDYVLYNMNDVLSHLIIKEDEIRRNLES-DDSIMSESIVRALTLSGMPRQDAHEFVRRASMEARSNGKSLKSSLIE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHCCCEECHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999998874688889999998864-98748999999999809988789999999999999859878999750
Q ss_pred CHHHHCCCCHHHHHHHCCHHHHHCCHHHHHHHHHHHC
Q ss_conf 7432305998999985188988501999999988519
Q gi|254780974|r 399 DVDIRKVLSEKEICDKFDYKYHTKHVNAIFERVFQMF 435 (435)
Q Consensus 399 d~~i~~~l~~~eL~~~ldP~~~~g~a~~i~d~vl~~y 435 (435)
+ .+...+++++|+.+|||++|+|.|.+++|+|++.+
T Consensus 407 ~-~i~~~l~~~eld~~ldP~~YlG~a~~lvd~vl~~~ 442 (451)
T PRK06390 407 A-GILKYIDEKTLDRAMDPANFIGQAPSICDNVVNNA 442 (451)
T ss_pred C-HHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 6-03214999999873698887643999999999999
No 11
>PRK08937 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=805.32 Aligned_cols=424 Identities=48% Similarity=0.784 Sum_probs=413.8
Q ss_pred CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 98874987888727958899999999999999977768999899999998300127898999988746378547999999
Q gi|254780974|r 1 MIPRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHL 80 (435)
Q Consensus 1 m~~ry~~~e~~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~a~~~~l 80 (435)
||+||+++||+.||||++++++|++||.|+|++|+++| ||++++++|.+++ .+|++++.+.++.++|||++|++.|
T Consensus 1 ~~~ry~~~em~~i~s~~~~~~~~l~vE~ala~aq~~~G-Ip~~~~~~i~~~~---~~d~~~~~~~e~~~~h~v~a~v~~l 76 (425)
T PRK08937 1 MISRYSSQEMSAIWSDENKFTTWLELEIAIAEAQAELG-IPKEDLESIREKA---KFDIDRILEIEKETRHDVVAFIRAL 76 (425)
T ss_pred CCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHC---CCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 98642879999880928999999999999999998849-8999999999865---8999999999999697969999999
Q ss_pred HHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98679343225567770778778999998511024678888889999873332010021012321025542223334455
Q gi|254780974|r 81 AEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMA 160 (435)
Q Consensus 81 ~~~~g~~~~~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~ 160 (435)
.++||++++|||||+|||||+||+++|++|+++..+.++|..++..|.++|++|++|+|+||||+|||+|||||+|+++|
T Consensus 77 ~~~~~~~~~~vH~G~TSqDi~DTa~~l~l~~a~~~l~~~l~~l~~~L~~la~~~~~t~m~grTh~Q~A~P~T~G~~~a~~ 156 (425)
T PRK08937 77 AEKLGEDRKFIHYGLTSTDVVDTALAYLLKEALELIARELEAFIDGLAEDAKEYKLLVMLGRTHGVHAEPTTLGIKIALW 156 (425)
T ss_pred HHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 98666333613525316635889999999999999999999999999999998537742357537808676599999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43100014889998643101001112222246646678865542257876635202333334567788877644688999
Q gi|254780974|r 161 YAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVA 240 (435)
Q Consensus 161 ~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~~l~~~~~~l~kia 240 (435)
+++|.|+++||.+++++++.+++||||||+++.+|.+++++++.|||..++.++|+.+||++++++++|++++++++|||
T Consensus 157 ~~~l~r~~~rl~~~~~~~~~~~~~GavGt~~~~~~~~~~~~a~~LGl~~~~~~~~~~~Rd~~~e~~~~l~~~~~~l~kia 236 (425)
T PRK08937 157 YQEMKRNLERLKEALDRLEVRKISGAVGTYANLSDLLEKYVALKLGLDPDEISTQVLPRDRHLEYIVALAIIAASTEKFA 236 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999988876345620120124688999999987699999875114036359999999999998999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHCCCCHH
Q ss_conf 99999516787600025644654201232102415678775211233431002354311431354321015554172045
Q gi|254780974|r 241 TEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVIGPDAT 320 (435)
Q Consensus 241 ~Dl~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~ 320 (435)
+|+++|+++| |+.|+|..+|+||||||||+||+.||.++++|++++|+..+++.++.+||| |.++|..||..+|+++
T Consensus 237 ~Di~~l~~~e--e~~e~~~~~~~GSS~MPhK~NPi~~E~~~~lar~~~~~~~~~~~~~~~~~e-d~~~~~~e~~~lp~~~ 313 (425)
T PRK08937 237 REIRLLQRSE--EVEEGFNKGQKGSSAMPHKRNPIGSERVTGLARVLRSYLATAAENVPLWHE-DISHSSAERIILPDAF 313 (425)
T ss_pred HHHHHHHCCC--CEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHH
T ss_conf 9999995789--678746999987677785618588999999999998768999998760263-4444435674589999
Q ss_pred HHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCH
Q ss_conf 78999999987423100437357999986445837899999999872999899999999999999981999899985074
Q gi|254780974|r 321 IHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADV 400 (435)
Q Consensus 321 ~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~l~~d~ 400 (435)
.++++++..+..++++|+||+++|++|++.++|+++||++++.|+++|+||++||++|+++++.+..++++|+|++.+++
T Consensus 314 ~~~~~~l~~~~~~l~~L~v~~e~m~~nl~~~~g~i~ae~~~~~l~~~glgr~~Ahe~v~~~a~~a~~~~~~l~e~l~~~~ 393 (425)
T PRK08937 314 LALDYALRRFSNLLDNLEVYPENMERNIRQEFGFIATQRVLLALVEKGLGREDAYELVQESAMESWQKQGDLRPLLHADK 393 (425)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 99999999999988774145999999999845678799999999875999799999999999999987988999996299
Q ss_pred HHHCCCCHHHHHHHCCHHHHHCCHHHHHHHHHH
Q ss_conf 323059989999851889885019999999885
Q gi|254780974|r 401 DIRKVLSEKEICDKFDYKYHTKHVNAIFERVFQ 433 (435)
Q Consensus 401 ~i~~~l~~~eL~~~ldP~~~~g~a~~i~d~vl~ 433 (435)
.+. ++++||+++|||++|+|.+++++|||..
T Consensus 394 ~~~--ls~eeld~~ldP~~ylG~a~~i~drv~~ 424 (425)
T PRK08937 394 SII--LSKEELEEAFDPKKFIGAVDEIFKRVGN 424 (425)
T ss_pred CCC--CCHHHHHHHCCHHHHHCCHHHHHHHHCC
T ss_conf 889--9999999871999886628999998657
No 12
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase_1: Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=0 Score=785.66 Aligned_cols=374 Identities=63% Similarity=0.995 Sum_probs=367.7
Q ss_pred CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 74987888727958899999999999999977768999899999998300127898999988746378547999999986
Q gi|254780974|r 4 RYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHLAEI 83 (435)
Q Consensus 4 ry~~~e~~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~a~~~~l~~~ 83 (435)
||+++||+.||||++++++|++||.|+|++|+++|+||++++++|.++++ +|++++++.++.++|||+|+++.|.++
T Consensus 1 Ry~~~em~~ifsd~~~~~~~l~vE~AlA~aqa~~G~Ip~~aa~~I~~~~~---~d~~~i~~~e~~~~hdv~a~v~~l~e~ 77 (387)
T cd01360 1 RYGRPEMKKIWSEENKFRKWLEVEAAVCEAWAKLGVIPAEAAEEIRKKAK---FDVERVKEIEAETKHDVIAFVTAIAEY 77 (387)
T ss_pred CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC---CCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99968999880969999999999999999998779999999999998665---899999999988499839999999986
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79343225567770778778999998511024678888889999873332010021012321025542223334455431
Q gi|254780974|r 84 IGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAE 163 (435)
Q Consensus 84 ~g~~~~~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~~~ 163 (435)
||+.|+|||||+|||||+||+++|++|+++..+.++|..++++|.++|++|++|+||||||+|||+|||||||+++|+++
T Consensus 78 ~g~~~~~iH~G~TsqDivdTa~~L~lk~a~~~i~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~ 157 (387)
T cd01360 78 CGEAGRYIHFGLTSSDVVDTALALQLREALDIILKDLKELLEVLKKKALEHKDTVMVGRTHGIHAEPTTFGLKFALWYAE 157 (387)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 64010612317757419989999999976999999999999999999998127740125325644235399999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00014889998643101001112222246646678865542257876635202333334567788877644688999999
Q gi|254780974|r 164 FSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVATEI 243 (435)
Q Consensus 164 l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~~l~~~~~~l~kia~Dl 243 (435)
|.|+++||.+++++++.+|+||||||+++.+|.+++++|+.|||..++.++|+++||+++++++++++++++|+|||+|+
T Consensus 158 l~r~~~rL~~~~~~~~~~~lgGAvGt~a~~~~~~~~~~a~~LGl~~~~~~~~~~~Rd~~~e~~~~l~~i~~~l~kia~Di 237 (387)
T cd01360 158 FKRHLERLKEARERILVGKISGAVGTYANLGPEVEERVAEKLGLKPEPISTQVIQRDRHAEYLSTLALIASTLEKIATEI 237 (387)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998842044642103566997999999998099977654222153899999999999998999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHH
Q ss_conf 99516787600025644654201232102415678775211233431002354311431354321015554172045789
Q gi|254780974|r 244 RHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVIGPDATIHL 323 (435)
Q Consensus 244 ~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~ 323 (435)
++|+++|||||.|||..+++|||||||||||+.+|.++++++.++|+..++++++++|||||++.|..+|+.+|+++.++
T Consensus 238 ~~l~~~e~~el~e~f~~~~~GSS~MPhK~NP~~~E~i~~lar~~~~~~~~~~~~~~~~~eRDl~~~~~e~~~lp~~~~~~ 317 (387)
T cd01360 238 RHLQRTEVLEVEEPFSKGQKGSSAMPHKRNPILSENICGLARVIRSNVIPALENVALWHERDISHSSVERVILPDATILL 317 (387)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99874210162224689997048777661758889999999999999999970465534355412477775478899999
Q ss_pred HHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 999999874231004373579999864458378999999998729998999999999
Q gi|254780974|r 324 DFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQR 380 (435)
Q Consensus 324 ~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~ 380 (435)
++++..+..++++|+||+++|++|++.++|+++||++|++|+++|+||++||++|++
T Consensus 318 ~~~L~~~~~ll~~L~v~~~~M~~nl~~~~g~~~ae~~~~~Lv~~G~~r~~Ah~~V~r 374 (387)
T cd01360 318 DYILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLALVEKGMSREEAYEIVQR 374 (387)
T ss_pred HHHHHHHHHHHCCCEECHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999999985488989999999860478679999999998779988999999999
No 13
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase_like (ASL_like): This subgroup contains proteins similar to ASL and prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE). These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has bee
Probab=100.00 E-value=0 Score=736.19 Aligned_cols=371 Identities=49% Similarity=0.750 Sum_probs=362.1
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCHH-H
Q ss_conf 887279588999999999999999777689998999999983001278989999887463785479999999867934-3
Q gi|254780974|r 10 MTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHLAEIIGPD-A 88 (435)
Q Consensus 10 ~~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~a~~~~l~~~~g~~-~ 88 (435)
|+.||||++++++|++||.|+|++|+++|+||++++++|.++++...+|++++.+.++.++|||++++..|.+++|+. +
T Consensus 1 m~~ifsd~~~i~~~l~ve~A~a~a~~~~G~ip~~~a~~I~~~~~~~~~d~~~~~~~~~~~~h~v~a~~~~l~~~~~~~~~ 80 (381)
T cd01595 1 MRAIFSEENKLRTWLDVEAALAEAQAELGLIPKEAAEEIRAAADVFEIDAERIAEIEKETGHDVIAFVYALAEKCGEDAG 80 (381)
T ss_pred CHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHCC
T ss_conf 96661908999999999999999998779999999999999874054789999999876288089999999986770214
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22556777077877899999851102467888888999987333201002101232102554222333445543100014
Q gi|254780974|r 89 RFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSR 168 (435)
Q Consensus 89 ~~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~ 168 (435)
+|||+|+|||||+||+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||+|||||||+++|+++|.|++
T Consensus 81 ~~vH~G~TsnDi~~Ta~~L~lr~~~~~l~~~l~~l~~~l~~~a~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~ 160 (381)
T cd01595 81 EYVHFGATSQDINDTALALQLRDALDIILPDLDALIDALAKLALEHKDTPMLGRTHGQHALPTTFGKKFAVWAAELLRHL 160 (381)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 75568975888887999999999999999999999999999999814871103113671766649999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC---HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999864310100111222224664---667886554225787663520233333456778887764468899999999
Q gi|254780974|r 169 KRLLTAREEIAVCAISGSVGTFSNIH---PYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVATEIRH 245 (435)
Q Consensus 169 ~rl~~~~~~~~~~~lgGAvGt~~~~~---~~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~~l~~~~~~l~kia~Dl~~ 245 (435)
+||.+++++++.+++|||+||+.+.+ |.+++++|+.|||..++.++|+.+||++++++++|++++++|+|||+|+++
T Consensus 161 ~rl~~~~~~~~~~~lgGavGt~~~~~~~~~~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~~l~~~~~~l~kia~Dl~~ 240 (381)
T cd01595 161 ERLEEARERVLVGGISGAVGTHASLGPKGPEVEERVAEKLGLKVPPITTQIEPRDRIAELLSALALIAGTLEKIATDIRL 240 (381)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999898725786320110249966999999999848998730320113379999999999999999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHH
Q ss_conf 51678760002564465420123210241567877521123343100235431143135432101555417204578999
Q gi|254780974|r 246 LQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVIGPDATIHLDF 325 (435)
Q Consensus 246 l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~ 325 (435)
|+++|||||.|||..+|+|||||||||||+.+|.+++++++++|+..+++.++.++||||+++|..+|..+|+++.++.+
T Consensus 241 ~~~~e~gev~~~~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~l~~~~eRD~~~~~~~~~~l~~~~~~~~~ 320 (381)
T cd01595 241 LQRTEIGEVEEPFEKGQVGSSTMPHKRNPIDSENIEGLARLVRALAAPALENLVQWHERDLSDSSVERNILPDAFLLLDA 320 (381)
T ss_pred HHHHCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 86310450313678999887888887686889999999999999999999854200148874028999899999999999
Q ss_pred HHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999874231004373579999864458378999999998729998999999999
Q gi|254780974|r 326 ALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQR 380 (435)
Q Consensus 326 ~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~ 380 (435)
++..+..++++|+||+++|++|++.++|+++||.+++.|+++|+||++||++|++
T Consensus 321 ~l~~~~~ll~~l~vn~~~m~~nl~~~~g~i~ae~~~~~L~~~Gi~~~~Ah~iV~e 375 (381)
T cd01595 321 ALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAKKGLGRQEAYELVKE 375 (381)
T ss_pred HHHHHHHHHCCCEECHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999877499999999999872468779999999998839987789999999
No 14
>TIGR00838 argH argininosuccinate lyase; InterPro: IPR009049 This entry represents argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens. ; GO: 0004056 argininosuccinate lyase activity, 0042450 arginine biosynthetic process via ornithine.
Probab=100.00 E-value=0 Score=658.45 Aligned_cols=412 Identities=19% Similarity=0.200 Sum_probs=373.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHH-HHHHHHHCCCHH-HHHHHHHHHCC-HHHCCC
Q ss_conf 958899999999999999977768999899999998300127898999-988746378547-99999998679-343225
Q gi|254780974|r 15 SLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRI-MELDSIIKHDVI-AFLTHLAEIIG-PDARFI 91 (435)
Q Consensus 15 s~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~-~~~~~~~~~~v~-a~~~~l~~~~g-~~~~~i 91 (435)
=|.+.+.+-+....||..++.+.|+|++|.+.+|.+++.....++..- +.....+..||+ +++..|++++| +.|+++
T Consensus 23 FD~~l~~~Di~~~~AH~~~L~k~GiLt~Ee~~~l~~gL~~l~~e~~~~P~~~~~~~~EDiH~a~E~~Li~~~G~d~ggkl 102 (469)
T TIGR00838 23 FDKELAEADIEGSIAHTKMLKKAGILTEEEAAKLIEGLNELKEEVREGPKFNLDVDLEDIHMAIERELIDRVGEDLGGKL 102 (469)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCC
T ss_conf 89999997213359999998752798888999999999999998860888789617103567998888762370101312
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56777077877899999851102467888888999987333201002101232102554222333445543100014889
Q gi|254780974|r 92 HQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRL 171 (435)
Q Consensus 92 H~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rl 171 (435)
|+||||||+|.|.++|++|+.+..|...|..++++|.++|++|.+++||||||+|+||||||+|+|.+|.+.|.||.+||
T Consensus 103 HTGRSRNDQVATDlrl~lr~~v~~~~~~l~~~~~~L~e~Ae~~~~~~mPGYTHLQrAQPi~lAHhLLAY~~~l~RD~~RL 182 (469)
T TIGR00838 103 HTGRSRNDQVATDLRLYLRDHVREIAEALLDLQKVLIELAEKHVETLMPGYTHLQRAQPITLAHHLLAYAEMLERDYERL 182 (469)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 46787641789989999999999999999999999999861287366148510135010569999999998999889999
Q ss_pred HHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9986431010011-122222466466788655422578766352--0233333456778887764468899999999516
Q gi|254780974|r 172 LTAREEIAVCAIS-GSVGTFSNIHPYVEQHVADAMGLKTDPISS--QVIARDRHAMYFSVLGVIASSIERVATEIRHLQR 248 (435)
Q Consensus 172 ~~~~~~~~~~~lg-GAvGt~~~~~~~~~~~~a~~LGl~~~~~~~--~~~~rd~~~e~~~~l~~~~~~l~kia~Dl~~l~~ 248 (435)
.++++|++++||| ||. .++.+|.+|+++|+.|||.....|| .+++||+++|+++++++++.+|||||+|+++|++
T Consensus 183 ~d~~kR~n~SPLGsGAl--AGt~f~iDR~~~A~lLGF~~~~~NSlDaVSdRDFi~E~l~~~a~~m~hLSR~aEelIlw~s 260 (469)
T TIGR00838 183 QDALKRVNVSPLGSGAL--AGTSFPIDREYTAELLGFDAVTENSLDAVSDRDFIIELLFVAALIMVHLSRLAEELILWSS 260 (469)
T ss_pred HHHHHHHCCCCCCCCHH--HCCCCCCCHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99998850488655032--0689876888897631867887520466520789999999999997417689899999844
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHCCCCCCCHHHHHCCCCHHHHHHH
Q ss_conf 7876000256446542012321024156787752112334310023---5431143135432101555417204578999
Q gi|254780974|r 249 TEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPA---MENVALWHERDISHSSVERVIGPDATIHLDF 325 (435)
Q Consensus 249 ~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~---~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~ 325 (435)
.|||.|++|+. .+.||||||||+||+.+|.+||.++.+.|.+.++ +.+.+..||||++.-.. .+.++...+..
T Consensus 261 ~EFgfieL~D~-~stGSSiMPQKKNPD~aELiRGK~Grv~G~L~g~L~~lKalP~aYNrDlQEdkE---~LFD~v~t~~~ 336 (469)
T TIGR00838 261 QEFGFIELPDE-FSTGSSIMPQKKNPDVAELIRGKTGRVIGNLTGLLTILKALPLAYNRDLQEDKE---PLFDAVKTVEL 336 (469)
T ss_pred CCCCEEEECCC-EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH---HHHHHHHHHHH
T ss_conf 68760674573-200576888877720799998755268999999999971123323510013783---67889999999
Q ss_pred HHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCC--------CHHHHH
Q ss_conf 999987423100437357999986445837899999999872-99989999999999999998199--------989998
Q gi|254780974|r 326 ALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQA-GVSREEAYQLVQRNAMKVWKNGA--------IFLDVL 396 (435)
Q Consensus 326 ~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~-Gig~~~Ah~~v~~~a~~a~~~~~--------~l~e~l 396 (435)
++..++.++.+|+||++||.+ ....+|.+||.+++.||++ |+|||+||++|+++|..+.+.|+ .|.|+.
T Consensus 337 ~~~~~~~~l~~i~vn~er~~e--~A~~~f~~ATdLADyLV~k~GVPFR~AH~ivG~~V~~~~e~G~~PGd~~~~~L~~lt 414 (469)
T TIGR00838 337 SLEVMTGMLDTIKVNKERMEE--AASAGFSNATDLADYLVRKRGVPFREAHHIVGELVATAIERGKSPGDVDASGLEELT 414 (469)
T ss_pred HHHHHHHHHHCCCCCHHHHHH--HHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCC
T ss_conf 999999998308158789999--864488707889999983479980677899999999999727899986510123136
Q ss_pred HCCHH-HHCCCCHHHHHHHCCHHHHH-------CCHH---HHHHHHHHH
Q ss_conf 50743-23059989999851889885-------0199---999998851
Q gi|254780974|r 397 LADVD-IRKVLSEKEICDKFDYKYHT-------KHVN---AIFERVFQM 434 (435)
Q Consensus 397 ~~d~~-i~~~l~~~eL~~~ldP~~~~-------g~a~---~i~d~vl~~ 434 (435)
.+... +...|.++.+.++|||+..+ |-++ +.|.++++.
T Consensus 415 ~ee~~~~~~~~~ed~v~~~L~~~~~V~~R~~~GGtapGrv~~V~~~I~~ 463 (469)
T TIGR00838 415 LEELQKFSEEFEEDKVYEALDPEESVEKRDAYGGTAPGRVEEVEKAIEE 463 (469)
T ss_pred HHHHHHHCCCCCHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 7999974213573357774287999970257887881069999999999
No 15
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=0 Score=646.65 Aligned_cols=331 Identities=24% Similarity=0.324 Sum_probs=318.2
Q ss_pred CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 88749878887279588999999999999999777689998999999983001278989999887463785479999999
Q gi|254780974|r 2 IPRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHLA 81 (435)
Q Consensus 2 ~~ry~~~e~~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~a~~~~l~ 81 (435)
.+||+++||+.||||+++|++|++||.|+|++|+++|+||++++++|.+++....+|++++.+.++.++|+|++|++.+.
T Consensus 12 ~~~y~~~em~~ifSde~~~~~~l~vE~Ala~Aqa~lG~IP~~aa~~I~~~~~~~~~d~~~l~~~~~~~g~~v~a~v~~l~ 91 (353)
T PRK05975 12 SGLFGDDEIAALFSAEADIAAMLAFEAALAEAEAEHGIIPAEAAERIAAACETFEPDLAALRHATARDGVVVPALVRQLR 91 (353)
T ss_pred HHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 62029999998809199999999999999999998799999999999986013357899999898744861899999999
Q ss_pred HHCCHH-HCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 867934-3225567770778778999998511024678888889999873332010021012321025542223334455
Q gi|254780974|r 82 EIIGPD-ARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMA 160 (435)
Q Consensus 82 ~~~g~~-~~~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~ 160 (435)
+.||++ ++|||||+|||||+||++.|++|+++.++.++|..+++.|.++|.+|++|+|+||||+|||+|||||+|++.|
T Consensus 92 ~~~~~~a~~~vH~GaTSqDV~DTa~~L~lr~al~~i~~~L~~l~~~L~~la~~h~~t~m~GRThgq~A~P~TfG~k~a~w 171 (353)
T PRK05975 92 AAVGEEAAAHVHFGATSQDVIDTSLMLRLKAAVEILAARLGALIEALDALEATFGGNALTGHTRMQAAIPITVADRLASW 171 (353)
T ss_pred HHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHH
T ss_conf 86586767361289854217878999999999999999999999999999998616750003147626011599999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH---HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 431000148899986431010011122222466466---78865542257876635202333334567788877644688
Q gi|254780974|r 161 YAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIHPY---VEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIE 237 (435)
Q Consensus 161 ~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~~~---~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~~l~~~~~~l~ 237 (435)
+++|.|+++||.++++++..+++||||||+++++|. +++.++++|||..++ .||.+||++++++++|++++++++
T Consensus 172 ~~el~r~~~rl~~~~~~~~~~~~~GAvGt~a~~~~~~~~v~~~~a~~LgL~~~~--~~~~~Rd~~~e~~~~La~ia~sl~ 249 (353)
T PRK05975 172 RAPLARHRDRLEALRPDVFPVQFGGAAGTLEKLGGKAAAVRAELAKRLGLEDPP--QWHSQRDFIADFGHLLSLVTGSLG 249 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCCHHHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999866665046621210035762899999999875999987--501021329999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHCCC
Q ss_conf 99999999516787600025644654201232102415678775211233431002354311431354321015554172
Q gi|254780974|r 238 RVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVIGP 317 (435)
Q Consensus 238 kia~Dl~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~ 317 (435)
|||+||++|+++| + |++..+|+|||+|||||||+.||+++++++.++++++++++++.+|||||.++|..||+++|
T Consensus 250 kia~di~~l~~~~-~---E~~~~g~~GSSaMPhKrNPi~~E~i~~laR~~~~~~~~~~~a~~~~~ER~~~~w~~Ew~~lP 325 (353)
T PRK05975 250 KFGQDIALMAQLG-D---EISLSGGGGSSAMPHKQNPVAAETLVTLARFNATQVSGLHQALVHEQERSGAAWTLEWMILP 325 (353)
T ss_pred HHHHHHHHHHHCC-C---CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9999999985035-1---15357898877788765838899999999878877878987441030046861678999999
Q ss_pred CHHHHHHHHHHHHHHHHHHCE
Q ss_conf 045789999999874231004
Q gi|254780974|r 318 DATIHLDFALNRLKNVIEELV 338 (435)
Q Consensus 318 ~~~~~~~~~l~~~~~ll~~L~ 338 (435)
++|.+++++|..+.++++||+
T Consensus 326 ~~~~~~~~~L~~a~~ll~~Lv 346 (353)
T PRK05975 326 QMVAATGAALRLAAELAGNIV 346 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998288
No 16
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains proteins similar to ASAL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotleic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication. In h
Probab=100.00 E-value=0 Score=640.57 Aligned_cols=413 Identities=23% Similarity=0.223 Sum_probs=368.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCH-HHHHHHHHHHCCHHHCCCCC
Q ss_conf 95889999999999999997776899989999999830012789899998874637854-79999999867934322556
Q gi|254780974|r 15 SLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDV-IAFLTHLAEIIGPDARFIHQ 93 (435)
Q Consensus 15 s~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v-~a~~~~l~~~~g~~~~~iH~ 93 (435)
.|...+.+...+..||+.|+.|.|+||++.+++|.+++.....+...-.........|+ ++++.++.+++|+.|+|||+
T Consensus 4 ~d~~l~~~di~~~~AH~~mL~e~Gil~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ed~~~~iE~~l~e~~g~~~~~iH~ 83 (435)
T cd01359 4 FDRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAGLAKIRAEIEAGAFELDPEDEDIHMAIERRLIERIGDVGGKLHT 83 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHCC
T ss_conf 88999999999999999999987999999999999999999824525873257877861699999999987577461037
Q ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77707787789999985110246788888899998733320100210123210255422233344554310001488999
Q gi|254780974|r 94 GMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLT 173 (435)
Q Consensus 94 G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~ 173 (435)
|+||||++||+++|++|+.+..+...+..++++|..+|++|++++||||||+|||||+|||||+++|+++|.|+++||.+
T Consensus 84 GrSrND~v~Ta~~L~lr~~l~~l~~~l~~l~~~l~~~A~~~~~~~m~GrTH~Q~A~P~TfG~~~~~~~~~l~r~~~rL~~ 163 (435)
T cd01359 84 GRSRNDQVATDLRLYLRDALLELLELLLDLQRALLDRAEEHADTIMPGYTHLQRAQPITFGHYLLAYAEMLERDLERLAD 163 (435)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88788999999999999999999999999999999999974698712665662153522898999999999999999998
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 86431010011122222466466788655422578766352--0233333456778887764468899999999516787
Q gi|254780974|r 174 AREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISS--QVIARDRHAMYFSVLGVIASSIERVATEIRHLQRTEI 251 (435)
Q Consensus 174 ~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~--~~~~rd~~~e~~~~l~~~~~~l~kia~Dl~~l~~~ei 251 (435)
++++++.+|+||++|++. .+|.+|+++|++|||..+..++ ++.+||+++++++++++++.+|+|||+|+++|+++|+
T Consensus 164 ~~~~~~~~plG~~A~~Gt-~~~~dr~~~a~~LGf~~~~~ns~~av~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~s~e~ 242 (435)
T cd01359 164 AYKRVNVSPLGAGALAGT-TFPIDRERTAELLGFDGPTENSLDAVSDRDFVLEFLSAAALLMVHLSRLAEDLILWSTQEF 242 (435)
T ss_pred HHHHHHHHCCCCCCCCCC-CCCCCHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 986642513452003688-7677768999982899787467889870439999999999999999999999999706667
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 60002564465420123210241567877521123343100235---431143135432101555417204578999999
Q gi|254780974|r 252 LEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAM---ENVALWHERDISHSSVERVIGPDATIHLDFALN 328 (435)
Q Consensus 252 gei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~---~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~ 328 (435)
|+|..| ...++|||||||||||+.+|.+++.+..+.|...+++ .+.+.||+||.+.. +..+++++..+..++.
T Consensus 243 g~iel~-~~~~~GSSiMPqKrNP~~~E~iR~~a~~~~g~~~~~~~~~~~~p~~~~~d~q~~---~~~l~~~~~~~~~~l~ 318 (435)
T cd01359 243 GFVELP-DAYSTGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLPLAYNKDLQED---KEPLFDAVDTLIASLR 318 (435)
T ss_pred CEEEEC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_conf 857525-999997988634569558999999999887799999999706840034547887---6767789999999999
Q ss_pred HHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHCCCC
Q ss_conf 98742310043735799998644583789999999987-29998999999999999999819998999850743230599
Q gi|254780974|r 329 RLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQ-AGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLS 407 (435)
Q Consensus 329 ~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~-~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~l~~d~~i~~~l~ 407 (435)
.+..++++++||++||+++++. ++++++.+++.|++ +|+|||+||++|+++++.+.++++++.++..++.....+++
T Consensus 319 ~~~~~l~~l~vn~~rm~~~~~~--~~~~at~lA~~Lv~~~GipFR~AH~iV~~lv~~a~~~~~~l~el~~~~~~~~~~~~ 396 (435)
T cd01359 319 LLTGVISTLTVNPERMREAAEA--GFSTATDLADYLVREKGVPFREAHHIVGRAVRLAEEKGKDLSDLTLAELQAISPLF 396 (435)
T ss_pred HHHHHHHHCCHHHHHHHHHHHC--CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHCCCC
T ss_conf 9999885031079999998846--81189999999999859988999999999999999819996766899996453478
Q ss_pred HHHHHHHCCHHHHH-------CCHHHHHHHHHHH
Q ss_conf 89999851889885-------0199999998851
Q gi|254780974|r 408 EKEICDKFDYKYHT-------KHVNAIFERVFQM 434 (435)
Q Consensus 408 ~~eL~~~ldP~~~~-------g~a~~i~d~vl~~ 434 (435)
++++++++||++++ |.++..|++.++.
T Consensus 397 ~~~i~~~ldp~~~v~~r~~~Gg~ap~~v~~~i~~ 430 (435)
T cd01359 397 EEDVREALDPENSVERRTSYGGTAPAEVREQIAR 430 (435)
T ss_pred HHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 8999986799999975658999989999999999
No 17
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase; InterPro: IPR012789 Proteins in this entry are 3-carboxy-cis,cis-muconate cycloisomerases, which catalyse the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate can all be converted in one step to protocatechuate. All members of the seed alignment for this entry were chosen from within protocatechuate degradation operons of at least three genes of the pathway, and from genomes with the complete pathway through beta-ketoadipate.; GO: 0047472 3-carboxy-ciscis-muconate cycloisomerase activity, 0019619 protocatechuate catabolic process.
Probab=100.00 E-value=0 Score=636.86 Aligned_cols=335 Identities=29% Similarity=0.374 Sum_probs=322.5
Q ss_pred CCC-CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 887-4987888727958899999999999999977768-99989999999830012789899998874637854799999
Q gi|254780974|r 2 IPR-YSRTTMTTLWSLETKFRIWFEIEAHACDALAKLG-VIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVIAFLTH 79 (435)
Q Consensus 2 ~~r-y~~~e~~~ifs~~~~~~~~l~ve~A~a~a~~e~G-~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~a~~~~ 79 (435)
.++ |++++|.++|||++++++|++||.||+++|++.| +||.++++.|...|....+|+..+.+.....||+|+++|+.
T Consensus 2 ~~g~fg~~~~~~~fsD~A~l~Aml~fEaALa~A~A~~Ga~iP~~Aa~~i~a~~~~~~~D~~~L~~~~A~~Gn~vipLV~~ 81 (351)
T TIGR02426 2 LDGLFGDPAALELFSDRAFLRAMLDFEAALARAQADVGALIPAEAAEAIEAACAEAAPDLEALAEAAAEAGNPVIPLVKA 81 (351)
T ss_pred CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99888840788751849999999999999999885228989788999999999877877999999986189987258998
Q ss_pred HHHHCCH---H-HCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9986793---4-32255677707787789999985110246788888899998733320100210123210255422233
Q gi|254780974|r 80 LAEIIGP---D-ARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGL 155 (435)
Q Consensus 80 l~~~~g~---~-~~~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~ 155 (435)
|++.+++ + ++|||+|+|||||+||+++|++|+++++|.++|.+|.+.|..++.+|++|+|+|||.+|||+|||||.
T Consensus 82 L~~~va~hd~~aa~~VH~GATSQDviDT~LML~lr~a~~l~~adl~~L~~~La~La~~hr~tpm~grTl~Q~A~P~T~G~ 161 (351)
T TIGR02426 82 LRKAVAEHDPEAARYVHRGATSQDVIDTALMLQLRDALDLLLADLGRLADALADLAARHRDTPMTGRTLLQQAVPTTFGL 161 (351)
T ss_pred HHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHH
T ss_conf 88863378721251026787357699999999999999999998999999999999973778873000001156799998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-C---C----HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 3445543100014889998643101001112222246-6---4----667886554225787663520233333456778
Q gi|254780974|r 156 KLAMAYAEFSRSRKRLLTAREEIAVCAISGSVGTFSN-I---H----PYVEQHVADAMGLKTDPISSQVIARDRHAMYFS 227 (435)
Q Consensus 156 ~~~~~~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~-~---~----~~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~ 227 (435)
|+++|.+.|.|.++||.++.++.+..|||||+||... . + -.+++.+|+.|||.. |...||+.||+++++.+
T Consensus 162 k~AgWL~~v~ra~~RL~~l~~~~l~lQfGGAaGTLaa~~~~~G~~D~~~va~aLA~~LgL~~-P~~pWHt~R~~ia~~g~ 240 (351)
T TIGR02426 162 KAAGWLAAVLRARDRLAALRTEALPLQFGGAAGTLAALLETRGATDALAVAAALAARLGLPL-PALPWHTQRDRIADFGA 240 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHH
T ss_conf 86326889999999999876414310146068999985068889983789999998607677-88887631479999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHCCCC
Q ss_conf 887764468899999999516787600025644654201232102415678775211233431002354-3114313543
Q gi|254780974|r 228 VLGVIASSIERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAME-NVALWHERDI 306 (435)
Q Consensus 228 ~l~~~~~~l~kia~Dl~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~-~~~~~~erd~ 306 (435)
.|+.++++|+||+.||.+|+++|+||+.||-..|.+|||+||||||||.|+.+.+.|+.++++.++++. ++.+.|||..
T Consensus 241 ~Lal~aGalGKia~Dv~ll~~~E~gE~~EP~~gGkGGSSaMPHKrNPV~a~~~~~aA~r~P~L~ATL~~aal~~~~ERs~ 320 (351)
T TIGR02426 241 ALALVAGALGKIAGDVALLSQTEVGEVFEPAGGGKGGSSAMPHKRNPVGAVLLLAAARRAPGLAATLFAAALAQEHERSL 320 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC
T ss_conf 99999865678899999998776787506888868988788100373899999999988699999998853021112652
Q ss_pred CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 2101555417204578999999987423100
Q gi|254780974|r 307 SHSSVERVIGPDATIHLDFALNRLKNVIEEL 337 (435)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~~~l~~~~~ll~~L 337 (435)
+.|+.||.+||+++.++.+++..+..+++||
T Consensus 321 G~WhaEW~~Lr~l~~lT~gAl~~~~~l~~Gl 351 (351)
T TIGR02426 321 GGWHAEWETLRELVRLTAGALRQAAELAEGL 351 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 0223201356999999999999999986039
No 18
>PRK00855 argininosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=627.28 Aligned_cols=415 Identities=21% Similarity=0.226 Sum_probs=366.4
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH-HHHHHHHHHCCHHHCCC
Q ss_conf 27958899999999999999977768999899999998300127898999988746378547-99999998679343225
Q gi|254780974|r 13 LWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVI-AFLTHLAEIIGPDARFI 91 (435)
Q Consensus 13 ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~-a~~~~l~~~~g~~~~~i 91 (435)
+=.|...+.+-..+..||+.++.+.|+|+++.++.|.+++.....+...-.........||+ +++..|.+++|+.|+|+
T Consensus 26 ~~~D~~l~~~di~~s~AH~~~L~~~gil~~~e~~~I~~~L~~i~~~~~~g~~~~~~~~EDih~~iE~~L~e~~G~~g~~l 105 (459)
T PRK00855 26 ISFDKRLAEEDIAGSIAHATMLAKQGILSEEEAEKILAGLDEILAEIEAGEFEFSVELEDIHMAIEARLTERIGDAGGKL 105 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHC
T ss_conf 98899999999998999999999879989999999999999999877549876788754289999999999847305231
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56777077877899999851102467888888999987333201002101232102554222333445543100014889
Q gi|254780974|r 92 HQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRL 171 (435)
Q Consensus 92 H~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rl 171 (435)
|+||||||+++|+++|++|+.+..+.+.+..++++|.++|++|++|+||||||+|||||+|||||+++|++.|.|+.+||
T Consensus 106 H~gRSRNDqv~t~~rL~~r~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpGyTHlQ~AqP~T~g~~l~a~~~~l~rd~~rl 185 (459)
T PRK00855 106 HTGRSRNDQVATDLRLYLRDEIDEIAELLLELQKALLDQAEEHADTIMPGYTHLQRAQPVTFGHHLLAYAEMLARDLERL 185 (459)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf 66777888999999999999999999999999999999999756987006656640245119889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9986431010011122222466466788655422578766352--02333334567788877644688999999995167
Q gi|254780974|r 172 LTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISS--QVIARDRHAMYFSVLGVIASSIERVATEIRHLQRT 249 (435)
Q Consensus 172 ~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~--~~~~rd~~~e~~~~l~~~~~~l~kia~Dl~~l~~~ 249 (435)
.+++++++.+|||++++++. ..|.+|+++|++|||..+..++ |+.+||+++|+++++++++.+|+|||+|+++|+++
T Consensus 186 ~~~~~r~~~~pLG~~A~~Gt-~~~idr~~~a~~LGf~~~~~ns~davs~rd~~~e~~~~la~~~~~LsRia~Dl~l~ss~ 264 (459)
T PRK00855 186 RDARKRVNRSPLGAAALAGT-SFPIDRERTAELLGFDGVTENSLDAVSDRDFALEFLSAASLLMVHLSRLAEELILWSSP 264 (459)
T ss_pred HHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98887630075553345578-87777689999809986556607767325389999999999999999999999998286
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHCCCCCCCHHHHHCCCCHHHHHHHH
Q ss_conf 8760002564465420123210241567877521123343100235---4311431354321015554172045789999
Q gi|254780974|r 250 EILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAM---ENVALWHERDISHSSVERVIGPDATIHLDFA 326 (435)
Q Consensus 250 eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~---~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~ 326 (435)
|+|+|.+|. ..++|||||||||||+.+|.+|+.+..+.|....++ .+.+.+|+||++.+.. .+.+++..+..+
T Consensus 265 e~g~v~l~d-~~~~GSSiMPqKrNP~~lEliR~~~~~~~G~l~~ll~~~~~lp~~y~rDlQe~k~---~~~~~~~~~~~~ 340 (459)
T PRK00855 265 EFGFVELPD-AFSTGSSIMPQKKNPDVAELIRGKTGRVYGHLTGLLTVMKGLPLAYNKDLQEDKE---PLFDAVDTLKLS 340 (459)
T ss_pred CCCEEECCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHH---HHHHHHHHHHHH
T ss_conf 568575178-8899798875666960899999999999868889999982896032001887788---888999999999
Q ss_pred HHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHCCC
Q ss_conf 99987423100437357999986445837899999999872999899999999999999981999899985074323059
Q gi|254780974|r 327 LNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVL 406 (435)
Q Consensus 327 l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~l~~d~~i~~~l 406 (435)
+..+..++++++||++||++++. .++++++.+++.|+++|+|||+||++|+++++.+.++|+++.++..++......+
T Consensus 341 l~~~~~~l~~l~v~~~rm~~~~~--~~~~~AtdlAd~Lv~~GipFR~AH~iV~~~v~~a~~~~~~l~el~~~~~~~~~~~ 418 (459)
T PRK00855 341 LEAFAGMLETLTVNKERMREAAE--KGFSTATDLADYLVRKGVPFRDAHEIVGKAVKEAEERGVDLADLSLEELQAFSPL 418 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHCHH
T ss_conf 99999886030227999999885--4830799999999986998899999999999999981999676899999876400
Q ss_pred CHHHHHHHCCHHHHH-------CCHHHHHHHHHHH
Q ss_conf 989999851889885-------0199999998851
Q gi|254780974|r 407 SEKEICDKFDYKYHT-------KHVNAIFERVFQM 434 (435)
Q Consensus 407 ~~~eL~~~ldP~~~~-------g~a~~i~d~vl~~ 434 (435)
.++++.+++||++.+ |.++..+++.++.
T Consensus 419 ~~~~i~~~ldp~~~v~~r~~~Gg~ap~~v~~~i~~ 453 (459)
T PRK00855 419 IEEDVYEVLTPEGSVAARNSIGGTAPEQVREQIAR 453 (459)
T ss_pred HHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 25999986799999986548999989999999999
No 19
>cd01334 Lyase_I Lyase class I family of the Lyase_I superfamily. This family contains proteins similar to class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), and 3-carboxy-cis,cis-muconate lactonizing (CMLE) enzyme. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=100.00 E-value=0 Score=611.96 Aligned_cols=321 Identities=35% Similarity=0.486 Sum_probs=304.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCHHHHHHHHHHHCCHH----HCCCCCC
Q ss_conf 9999999999999977768999899999998300127-8989999887463785479999999867934----3225567
Q gi|254780974|r 20 FRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAV-FNVDRIMELDSIIKHDVIAFLTHLAEIIGPD----ARFIHQG 94 (435)
Q Consensus 20 ~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~-~d~~~~~~~~~~~~~~v~a~~~~l~~~~g~~----~~~iH~G 94 (435)
+++|++||.|||++|+++|+||++++++|.++++... .+.......++.++||++++++++.+++++. ++|||+|
T Consensus 1 i~~~l~ve~A~a~a~~~~G~Ip~~~a~~I~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~vH~G 80 (330)
T cd01334 1 IRYMVEVEVALAKALEELGLIPKSAAEEIRSAADEFSEKFKKDVKEQEGSTTHDVMAFNEVLKELIGEAGGDAARFVHYG 80 (330)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 91389999999999988398999999999999999872412024200157786502999999999877466631546379
Q ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77077877899999851102467888888999987333201002101232102554222333445543100014889998
Q gi|254780974|r 95 MTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTA 174 (435)
Q Consensus 95 ~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~ 174 (435)
+||||++||+++|++|+++..+.+.|..++++|.++|++|++|+|+||||+|||+|+|||||+++|+++|.|+++||.++
T Consensus 81 ~TsnDi~dTa~~l~~r~al~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~ 160 (330)
T cd01334 81 ATSNDVLDTAFPLAIRDALKILLPALQQLIETLAEKALKYKDVVMMGRTHLQDASPITLGQEILGWAYELKRDLDRLEEV 160 (330)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88253899999999999999999999999999999999816770113111575777219999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCC---HHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 64310100111222224664---667886554225787-66352023333345677888776446889999999951678
Q gi|254780974|r 175 REEIAVCAISGSVGTFSNIH---PYVEQHVADAMGLKT-DPISSQVIARDRHAMYFSVLGVIASSIERVATEIRHLQRTE 250 (435)
Q Consensus 175 ~~~~~~~~lgGAvGt~~~~~---~~~~~~~a~~LGl~~-~~~~~~~~~rd~~~e~~~~l~~~~~~l~kia~Dl~~l~~~e 250 (435)
+++++.+|+||||||+.+.+ |.+++++++.|||.. .+.++|+++||+++++++++++++++|+|||+|+++|+++|
T Consensus 161 ~~~~~~~~lgGavGt~~~~~~~~~~~~~~~a~~Lgl~~~~~~~~~~~~rd~~~e~~~~l~~~a~~l~kia~Di~~l~~~e 240 (330)
T cd01334 161 KERVLFLGLGGAVGTGASTYPDPSEVRERVAKELGLAVRALNTTQISERDAMVELHSALKLLAAILSKIARDIRLLSSGE 240 (330)
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99886737649998767138978999999999827877686889882871799999999999999999999999985445
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 76000256446542012321024156787752112334310023543114313543210155541720457899999998
Q gi|254780974|r 251 ILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVIGPDATIHLDFALNRL 330 (435)
Q Consensus 251 igei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~ 330 (435)
|||+.||+..+|+|||||||||||+.+|.++++|++++|+..+++.++.+|||||..+|..+|..+|+++.++++++..+
T Consensus 241 ~~e~~~p~~~~~~GSS~MP~K~NPv~~E~i~~~a~~v~g~~~~~~~~~~~~~erd~~~~~~e~~~~~~~~~~l~~~l~~~ 320 (330)
T cd01334 241 IGEVKEPEAKGQGGSSAMPHKVNPIASERVTALARRVIANDESILMNLALGHLRDLVDSPVERNAIPDVVHTLTAVLETA 320 (330)
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 58487666789977688898859789999999999998279999987212556214687989999999999999999999
Q ss_pred HHHHHHCEEC
Q ss_conf 7423100437
Q gi|254780974|r 331 KNVIEELVVY 340 (435)
Q Consensus 331 ~~ll~~L~vn 340 (435)
.++++||+||
T Consensus 321 ~~~~~gl~vN 330 (330)
T cd01334 321 LGVCKGLEVN 330 (330)
T ss_pred HHHHCCCEEC
T ss_conf 9987548849
No 20
>PRK04833 argininosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=597.76 Aligned_cols=416 Identities=17% Similarity=0.140 Sum_probs=364.6
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHH-HHHHCCCHH-HHHHHHHHHCCHHHC
Q ss_conf 727958899999999999999977768999899999998300127898999988-746378547-999999986793432
Q gi|254780974|r 12 TLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMEL-DSIIKHDVI-AFLTHLAEIIGPDAR 89 (435)
Q Consensus 12 ~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~-~~~~~~~v~-a~~~~l~~~~g~~~~ 89 (435)
+|=-|...+.+-+..-.||++++.+.|+|+++.+++|.++++....++..-... ......||+ +++..|.+++|+.|+
T Consensus 22 Si~~D~~L~~~Di~~s~AH~~mL~~~gil~~~e~~~I~~~L~~i~~~~~~g~~~~~~~~~EDiH~~IE~~L~e~~G~~gg 101 (455)
T PRK04833 22 SLRFDYRLAEQDIVGSIAWSKALVTVGVLTADEQQQLEEALNELLEEVRANPQQILASDAEDIHSWVEGKLIDKVGDLGK 101 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 78889999999999899999999988998999999999999999999985991038999755489999999999743787
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25567770778778999998511024678888889999873332010021012321025542223334455431000148
Q gi|254780974|r 90 FIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRK 169 (435)
Q Consensus 90 ~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~ 169 (435)
++|+||||||+++|+++|++|+.+..+...+..|+++|.++|++|.+++||||||+|+|||+|||||+++|++.|.||.+
T Consensus 102 klHtgRSRNDqv~t~~rL~~r~~l~~l~~~l~~L~~~l~~~A~~~~~~impGyTHlQ~AqP~t~gh~l~a~~~~l~rd~~ 181 (455)
T PRK04833 102 KLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAENNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDES 181 (455)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHH
T ss_conf 86325778889999999999999999999999999999999997669844375445431441099999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899986431010011122222466466788655422578766352--023333345677888776446889999999951
Q gi|254780974|r 170 RLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISS--QVIARDRHAMYFSVLGVIASSIERVATEIRHLQ 247 (435)
Q Consensus 170 rl~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~--~~~~rd~~~e~~~~l~~~~~~l~kia~Dl~~l~ 247 (435)
||.++++++++||||++++.+ +.+|.+|+++|++|||+.+..++ .+.+||+++++++.+++++.+|+|||+|+++|+
T Consensus 182 rL~~~~~r~n~~PLGa~A~aG-T~~pidR~~~A~~LGF~~~~~Nsldavs~rD~~~e~~~~~a~~~~~LsRiaeDlil~s 260 (455)
T PRK04833 182 RLQDALKRLDVSPLGSGALAG-TAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAASISMVHLSRFAEDLIFFN 260 (455)
T ss_pred HHHHHHHHHCCCCCCHHHCCC-CCCCCCHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999899873427541232169-8766659999988499864535799997432999999999999999999999999982
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHH---HHHHHHCCCCCCCHHHHHCCCCHHHHHH
Q ss_conf 6787600025644654201232102415678775211233431002354---3114313543210155541720457899
Q gi|254780974|r 248 RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAME---NVALWHERDISHSSVERVIGPDATIHLD 324 (435)
Q Consensus 248 ~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~---~~~~~~erd~~~~~~~~~~l~~~~~~~~ 324 (435)
++|+|.+..| +..++|||||||||||+.+|.+|+.+..+.|...+++. +.+..|+||++.... .+.+++..+.
T Consensus 261 s~efg~i~l~-d~~~tGSSIMPQKkNPd~lEliRgka~~v~G~l~~ll~~~k~lP~~ynrDlqedk~---~l~~a~~~~~ 336 (455)
T PRK04833 261 SGEAGFVELS-DRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMLMTLKGLPLAYNKDMQEDKE---GLFDALDTWL 336 (455)
T ss_pred CCCCCEEEEC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH---HHHHHHHHHH
T ss_conf 5678848727-76678788875556973899998767788679999999975898634431666378---8999999999
Q ss_pred HHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHC
Q ss_conf 99999874231004373579999864458378999999998729998999999999999999819998999850743230
Q gi|254780974|r 325 FALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRK 404 (435)
Q Consensus 325 ~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~l~~d~~i~~ 404 (435)
.++..+..++++++||++||++.+. .++.+++++++.||++|+|||+||++|++++..+.++|+++.++-.++.....
T Consensus 337 ~~l~l~~~~i~~l~~n~~~~~~~~~--~~~~~ATdlAd~LV~~GvpFR~AH~ivg~lV~~~~~~~~~l~~l~~~~~~~~~ 414 (455)
T PRK04833 337 DCLHMAALVLDGIQVNRPRCQEAAQ--QGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLAELQKFS 414 (455)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHC--CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHC
T ss_conf 9999999999863568178998761--47330999999999859988999999999999999839993549999999762
Q ss_pred CCCHHHHHHHCCHHHHH-------CCHHHHHHHHHHH
Q ss_conf 59989999851889885-------0199999998851
Q gi|254780974|r 405 VLSEKEICDKFDYKYHT-------KHVNAIFERVFQM 434 (435)
Q Consensus 405 ~l~~~eL~~~ldP~~~~-------g~a~~i~d~vl~~ 434 (435)
.+.++++.++|||++.+ |.++..|.+.++.
T Consensus 415 ~~~~~dv~~~ld~~~~v~~R~~~Ggtap~~V~~~i~~ 451 (455)
T PRK04833 415 AVIGDDVYPILSLQSCLDKRAAKGGVSPQQVAQAIAA 451 (455)
T ss_pred CCCHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 0134899986899999986558999989999999999
No 21
>PRK09285 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=597.54 Aligned_cols=414 Identities=21% Similarity=0.287 Sum_probs=337.3
Q ss_pred CCCCC--HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC---CC---HHHHHHHHHHHHH-CCCCHHHHHHHHHHHCCCH
Q ss_conf 87498--78887279588999999999999999777689---99---8999999983001-2789899998874637854
Q gi|254780974|r 3 PRYSR--TTMTTLWSLETKFRIWFEIEAHACDALAKLGV---IP---EKSSKNIWEKGRN-AVFNVDRIMELDSIIKHDV 73 (435)
Q Consensus 3 ~ry~~--~e~~~ifs~~~~~~~~l~ve~A~a~a~~e~G~---ip---~~aa~~I~~~~~~-~~~d~~~~~~~~~~~~~~v 73 (435)
.||++ ++|+.||||++++++++.||.+|..++++.+. +| .+....+.+.... ...|..+++++|++++|||
T Consensus 14 gRY~~~t~emr~ifSE~alik~r~~VEi~~l~aLa~~~~~~~i~~~~~~~~~~l~~i~~~f~~~d~~~ikeiE~~t~HDV 93 (456)
T PRK09285 14 GRYASKVAALRPIFSEYGLIKYRVQVEVEWLQALAAEAGIPEVPPFSAEANAFLRAIVENFSEEDAARIKEIERTTNHDV 93 (456)
T ss_pred CCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
T ss_conf 33435568999880978998999999999999998365557889989999999999884389878999999874417877
Q ss_pred HHHHHHHHHHCC------HHHCCCCCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 799999998679------34322556777077877899999851102-46788888899998733320100210123210
Q gi|254780974|r 74 IAFLTHLAEIIG------PDARFIHQGMTSSDILDTCFSIQLMRSTD-ILLEDIDQLLESLKKRAFEYKDTLTIGRSHGI 146 (435)
Q Consensus 74 ~a~~~~l~~~~g------~~~~~iH~G~Ts~Di~~Ta~~l~~r~~l~-~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q 146 (435)
+|+++.+.+++. +.++|||||+|||||+||++.|++|+++. ++.+.+..+++.|..+|.+|+++||+||||||
T Consensus 94 kAvey~i~~~~~~~~~~~~~~~~iH~G~TS~DI~dta~~L~lk~al~~vi~~~l~~l~~~L~~~a~~~~~~~mlgRTHgQ 173 (456)
T PRK09285 94 KAVEYFLKEKLAALPELEAVSEFIHFACTSEDINNLSHALMLKEAREEVLLPALREIIDALKALAHEYADVPMLSRTHGQ 173 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 89999999999873200000000553535898872699999999999999999999999999999984656310000476
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--------CCHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 2554222333445543100014889998643101001112222246--------64667886554225787663520233
Q gi|254780974|r 147 HAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGSVGTFSN--------IHPYVEQHVADAMGLKTDPISSQVIA 218 (435)
Q Consensus 147 ~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~--------~~~~~~~~~a~~LGl~~~~~~~~~~~ 218 (435)
||+|||||++++.|.++|.|+++||.++. ..+++||||||+++ .|+.+.+.+++.|||...|.++|+.+
T Consensus 174 ~A~PtT~Gk~~a~~~~rl~r~~~rl~~~~---~~gKf~GAvGt~~A~~~~~p~~dw~~~~~~f~~~LGL~~~~~tTQi~~ 250 (456)
T PRK09285 174 PATPTTLGKEMANVAYRLERQIKQLAAVE---ILGKINGAVGNYNAHLAAYPEVDWHAFSREFVTSLGLTWNPYTTQIEP 250 (456)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 66341279999999999999999999988---888844454540467775478888999999999769998888777366
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 33345677888776446889999999951678760002564465420123210241567877521123343100235431
Q gi|254780974|r 219 RDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENV 298 (435)
Q Consensus 219 rd~~~e~~~~l~~~~~~l~kia~Dl~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~ 298 (435)
||+++++++.++.++.+|.||+.|++.+.+ +|++.|++.+||+|||+|||||||+.+|+.-+.+....+.........
T Consensus 251 ~D~~ae~~~~l~~i~~~l~~l~~Di~~~is--~~~~~e~~~~gevGSStMPhKrNPI~~Enaegnl~la~~l~~~~~~~l 328 (456)
T PRK09285 251 HDYIAELFDAVARFNTILIDLDRDVWGYIS--LGYFKQKTKAGEIGSSTMPHKVNPIDFENSEGNLGLANALLEHLAAKL 328 (456)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 318999999999985679999899999998--777742468999715888745286035644348999999999998746
Q ss_pred -HHHHCCCCCCCHHHHHC---CCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf -14313543210155541---72045789999999874231004373579999864458378999999998729998999
Q gi|254780974|r 299 -ALWHERDISHSSVERVI---GPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEA 374 (435)
Q Consensus 299 -~~~~erd~~~~~~~~~~---l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~A 374 (435)
...+|||+++|.++|.+ ++.++. ++..+...+++|.||+++|++||+..+ .++||++++.|.++| +.+|
T Consensus 329 ~~sr~qRDLtdSt~~R~igva~~~~~i----a~~~~~~gl~~L~vn~~~m~~nL~~~~-~ilaEav~~~lr~~g--~~~a 401 (456)
T PRK09285 329 PISRWQRDLTDSTVLRNLGVAFGYSLI----AYDSLLKGLSKLEVNEARLAADLDANW-EVLAEPIQTVMRRYG--IENP 401 (456)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCEECHHHHHHHHHCCH-HHHHHHHHHHHHHHC--CCCH
T ss_conf 657877752377888887768999999----999999874270798999998885083-067999999999808--9779
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHCCHHHHHHHH
Q ss_conf 999999999999819998999850743230599899998518898850199999998
Q gi|254780974|r 375 YQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTKHVNAIFERV 431 (435)
Q Consensus 375 h~~v~~~a~~a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g~a~~i~d~v 431 (435)
||.++++++....++..+.+.+... .+... ..++|.+ |+|++|+|.|.+++|+|
T Consensus 402 yE~~k~ltrg~~~~~~~l~~~~~~l-~~~~~-~k~~L~~-L~P~~YiG~A~~~vd~v 455 (456)
T PRK09285 402 YEKLKELTRGKRITAEALQEFIDGL-DLPEE-AKARLKA-LTPANYIGLAAELADEI 455 (456)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHC-CCCHH-HHHHHHH-CCCHHCCCCHHHHHHHC
T ss_conf 9999998656766689999999817-99989-9999982-99340031299998644
No 22
>PRK06705 argininosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=591.98 Aligned_cols=423 Identities=18% Similarity=0.157 Sum_probs=361.6
Q ss_pred CCCHHHHHHCCHHH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH-HHHHHHH
Q ss_conf 49878887279588--99999999999999977768999899999998300127898999988746378547-9999999
Q gi|254780974|r 5 YSRTTMTTLWSLET--KFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVI-AFLTHLA 81 (435)
Q Consensus 5 y~~~e~~~ifs~~~--~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~-a~~~~l~ 81 (435)
|-...+.+.|.... .+.++++|..||+.|+++.|+|+++.++.|..++.... ....-.........||+ +++..|.
T Consensus 21 y~~~vL~~~f~~~~~~l~~~~~~in~AH~~ML~~~gIi~~~ea~~I~~gL~~i~-~~~~~~~~~~~~~EDih~~iE~~L~ 99 (502)
T PRK06705 21 YVDCVLQHVFNFQRNYLLKDMFQVHKAHIVMLTEENLMKKEEAKFILHALKKVE-EIPEEQLLYTEQHEDLFFLVEHLIS 99 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999983266899999988989889999999998879989999999999999998-7653995269963205899999999
Q ss_pred HHC-CHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 867-9343225567770778778999998511024678888889999873332010021012321025542223334455
Q gi|254780974|r 82 EII-GPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMA 160 (435)
Q Consensus 82 ~~~-g~~~~~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~ 160 (435)
+.+ |+.|+++|.||||||++.|+++|++|+.+..+...+..++++|.++|++|.+|+||||||+|+|||+|||||+++|
T Consensus 100 ~~~ggd~ggklHtgRSRNDqvat~~Rl~~R~~l~~i~~~l~~l~~~l~~~A~~~~~timPgYTHlQ~AQP~t~gh~l~a~ 179 (502)
T PRK06705 100 QEAKSDFVSNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLLQESILQLAADHKETIMPAYTHTQPAQPTTFGHYTLAI 179 (502)
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHH
T ss_conf 98474510315554788899999999999999999999999999999999997568632364446311010698999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 431000148899986431010011122222466466788655422578766352--023333345677888776446889
Q gi|254780974|r 161 YAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISS--QVIARDRHAMYFSVLGVIASSIER 238 (435)
Q Consensus 161 ~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~--~~~~rd~~~e~~~~l~~~~~~l~k 238 (435)
++.|.||.+||.+++++++.||||.+++++ +.+|.+|+++|++|||+.+..|+ ++++||+.+|+++++++++.+|+|
T Consensus 180 ~~~l~RD~~Rl~~~~~r~n~sPLGa~AlaG-t~~piDR~~~A~lLGF~~~~~NS~davs~rD~~~e~~~~~s~~~~~LsR 258 (502)
T PRK06705 180 YDTMQRDLERMKKTYKLLNQSPMGAAALST-TSFPIKRERVADLLGFTNVIENSYDAVAGADYLLEVSSLLMVMMTNTSR 258 (502)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHCCCC-CCCCCCHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999985048731001257-8887788999987799987600399886336999999999999877999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHCCCCCCCHHHHHC
Q ss_conf 999999951678760002564465420123210241567877521123343100235---43114313543210155541
Q gi|254780974|r 239 VATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAM---ENVALWHERDISHSSVERVI 315 (435)
Q Consensus 239 ia~Dl~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~---~~~~~~~erd~~~~~~~~~~ 315 (435)
|++|+++|+++|||.|..|.. ..+|||||||||||+.+|.+|+.++.+.|...+++ .+.+..|++|++..... .
T Consensus 259 laedlilwss~Ef~fi~l~d~-~~tgSSIMPQKkNPd~lEliRgkag~v~G~l~~ll~~~kglP~~yn~D~qed~~~--~ 335 (502)
T PRK06705 259 WIHDFLLLATKEYDGITVARP-YVQISSIMPQKRNPVSIEHARAITSSALGEAFTVFQMIHNTPFGDIVDTEDDLQP--Y 335 (502)
T ss_pred HHHHHHHHHHCCCCEEEECCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH--H
T ss_conf 999999997115794870786-5566677886769838999999988888899999999758985224200312015--7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 7204578999999987423100437357999986445837899999999872-999899999999999999981999899
Q gi|254780974|r 316 GPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQA-GVSREEAYQLVQRNAMKVWKNGAIFLD 394 (435)
Q Consensus 316 l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~-Gig~~~Ah~~v~~~a~~a~~~~~~l~e 394 (435)
+.+++..+..++..+..++++++||+++|++.+ ..++..++++++.||++ |+|||+||++|+++++.+.++|+.+.+
T Consensus 336 l~~a~~~~~~~l~l~~~~i~~l~~n~~~m~~~~--~~~~~~ATdlAD~LVr~~gipFR~AH~ivg~~V~~a~~~~~~l~~ 413 (502)
T PRK06705 336 LYKGIEKAIRVFCIMNAVIRTMKVEEDTLKRRS--YKHAITITDFADVLTKNYGIPFRHAHHAASVIANMSLEQKKELHE 413 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHH--HCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 899999999999999998853803799999987--549713999999999835989889999999999999975999132
Q ss_pred HHHCCHH------HHCCCCHHHHHHHCCHHHHH-------CCHHHHHHHHHHH
Q ss_conf 9850743------23059989999851889885-------0199999998851
Q gi|254780974|r 395 VLLADVD------IRKVLSEKEICDKFDYKYHT-------KHVNAIFERVFQM 434 (435)
Q Consensus 395 ~l~~d~~------i~~~l~~~eL~~~ldP~~~~-------g~a~~i~d~vl~~ 434 (435)
+..++.. ....++++++.+++||++++ |.+++-|.+.++.
T Consensus 414 l~~~~~~~~~~~~~~~~l~e~~i~~aLdp~~~V~~R~~~GGpap~~v~r~I~~ 466 (502)
T PRK06705 414 LCFKDVNIYLQEKFKIQLLEKEWEEIISPEAFIQKRNVYGGPSKKEMERMINN 466 (502)
T ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 89999999987404679899999986699999987348999989999999999
No 23
>cd01598 PurB PurB: PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This group contains proteins similar to EcASL, the product of the gene purB in Escherichia coli. ASL is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=0 Score=590.17 Aligned_cols=400 Identities=24% Similarity=0.306 Sum_probs=331.9
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCH------HHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 887279588999999999999999777689998------99999998300127-89899998874637854799999998
Q gi|254780974|r 10 MTTLWSLETKFRIWFEIEAHACDALAKLGVIPE------KSSKNIWEKGRNAV-FNVDRIMELDSIIKHDVIAFLTHLAE 82 (435)
Q Consensus 10 ~~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~------~aa~~I~~~~~~~~-~d~~~~~~~~~~~~~~v~a~~~~l~~ 82 (435)
|+.+|||++.+++++.||.+|+.++++.|.||. +....+........ .|..+++++|++++|||+|+++.+.+
T Consensus 1 Lr~~FSE~alik~rv~VEi~~l~~L~~~~~i~~~~~~~~~~~~~l~~i~~~f~~~d~~~Ik~iE~~tnHDVkAvey~i~e 80 (425)
T cd01598 1 LRPYFSEYALIKYRVQVEVEWLIALSNLEEIPEVPPLTKEELKFLRAIIENFSEEDALRIKEIEATTNHDVKAVEYFLKE 80 (425)
T ss_pred CHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHHH
T ss_conf 95541868999999999999999996579876788789999999999997389989999999972518996451999999
Q ss_pred HCC------HHHCCCCCCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 679------3432255677707787789999985110-246788888899998733320100210123210255422233
Q gi|254780974|r 83 IIG------PDARFIHQGMTSSDILDTCFSIQLMRST-DILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGL 155 (435)
Q Consensus 83 ~~g------~~~~~iH~G~Ts~Di~~Ta~~l~~r~~l-~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~ 155 (435)
++. +..+|||||+|||||+||++.|++|+++ .++.+.+..++..|..+|.+|++|||+||||||||+|||||+
T Consensus 81 ~~~~~~~l~~~~e~IHfG~TSqDI~dta~~L~lk~a~~~vi~~~l~~l~~~L~~lA~~~~~tpmlgRTHGQ~A~PtTfGk 160 (425)
T cd01598 81 KFETLGLLKKIKEFIHFACTSEDINNLAYALMIKEARNEVILPLLKEIIDSLKKLAKEYADVPMLSRTHGQPATPTTLGK 160 (425)
T ss_pred HHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHH
T ss_conf 98754121344333564664888987999999999999999888999999999999985456311042177663401999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--------CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 34455431000148899986431010011122222466--------4667886554225787663520233333456778
Q gi|254780974|r 156 KLAMAYAEFSRSRKRLLTAREEIAVCAISGSVGTFSNI--------HPYVEQHVADAMGLKTDPISSQVIARDRHAMYFS 227 (435)
Q Consensus 156 ~~~~~~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~--------~~~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~ 227 (435)
+++.|+++|.|+++||.+.. ..+++||||||+++. |+.+++.+++.|||...|.++|+.+||+++++++
T Consensus 161 e~a~~~~rl~r~~~rL~~~~---~~gk~~GAvGt~~Ah~~a~p~~dw~~~~~~f~~~LGL~~~~~tTQI~~rD~~ae~~~ 237 (425)
T cd01598 161 ELAVFVYRLERQYKQLKQIE---ILGKFNGAVGNFNAHLVAYPDVDWRKFSEFFVTSLGLTWNPYTTQIEPHDYIAELFD 237 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999999999999999743---023105766632666763467649999999999728888988788566139999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHH---HHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 8877644688999999995167876000256446542012321024156787752---1123343100235431143135
Q gi|254780974|r 228 VLGVIASSIERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTG---LSRLIRSHVIPAMENVALWHER 304 (435)
Q Consensus 228 ~l~~~~~~l~kia~Dl~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~---~a~~~~g~~~~~~~~~~~~~er 304 (435)
.++.++++|.|||.|++.+.+ +||+.|||.+||+|||+|||||||+.+|+..+ +++.++++.+..+. ...+||
T Consensus 238 ~l~~i~~~l~~la~Di~~~~s--~~~~~e~~~~gqvGSStMPHK~NPI~~En~egnl~la~~l~~~~~~~l~--~sr~qR 313 (425)
T cd01598 238 ALARINTILIDLCRDIWGYIS--LGYFKQKVKKGEVGSSTMPHKVNPIDFENAEGNLGLSNALLNHLSAKLP--ISRLQR 313 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCC--HHHHHH
T ss_conf 999999999999999999985--0052126789898048888552850156650568889999999887333--188772
Q ss_pred CCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 43210155541720457899999998742310043735799998644583789999999987299989999999999999
Q gi|254780974|r 305 DISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMK 384 (435)
Q Consensus 305 d~~~~~~~~~~l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~ 384 (435)
|+++|.++|.+.. ++..+--++..+...+++|+||+++|++||+ +.+.++||++++.|.+. |+.+|||+|+++++.
T Consensus 314 DLsdStv~Rnig~-~~~~~~ia~~~~~~gL~~l~vn~~~m~~nL~-~~~~vlaEai~~~lr~~--G~~~aye~vk~ltrg 389 (425)
T cd01598 314 DLTDSTVLRNIGV-AFGHSLIAYKSLLRGLDKLELNEARLLEDLD-ANWEVLAEPIQTVMRRY--GIPNPYEKLKDLTRG 389 (425)
T ss_pred CCHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCEECHHHHHHHHH-CCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHCC
T ss_conf 2424677777765-3778999999999776285578999999987-18255999999999984--897889999998578
Q ss_pred HHHCCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHCC
Q ss_conf 998199989998507432305998999985188988501
Q gi|254780974|r 385 VWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTKH 423 (435)
Q Consensus 385 a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g~ 423 (435)
...++.++.+.+... ++... ..++|.. +.|.+|+|.
T Consensus 390 ~~~~~~~l~~~i~~l-~~~~~-~k~~l~~-ltP~~Y~G~ 425 (425)
T cd01598 390 KRIDKETLKEFIDSL-DIPEE-AKAELLA-LTPANYIGL 425 (425)
T ss_pred CCCCHHHHHHHHHHC-CCCHH-HHHHHHC-CCCCCCCCC
T ss_conf 988889999999838-99999-9999980-898466796
No 24
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=100.00 E-value=0 Score=575.71 Aligned_cols=413 Identities=17% Similarity=0.137 Sum_probs=361.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH-HHHHHHCCCHH-HHHHHHHHHCCHHHCCC
Q ss_conf 79588999999999999999777689998999999983001278989999-88746378547-99999998679343225
Q gi|254780974|r 14 WSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIM-ELDSIIKHDVI-AFLTHLAEIIGPDARFI 91 (435)
Q Consensus 14 fs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~-~~~~~~~~~v~-a~~~~l~~~~g~~~~~i 91 (435)
--|...++.-..--.|||+++++.|+|+++..++|..++.....++..-. ......-.||+ +++..|.+++|+.|+++
T Consensus 24 ~fD~rL~~~DI~gSiAHa~mL~~~gIlt~~E~~~I~~gL~~I~~ei~~~~~~~~~~~~EDIH~~IE~~L~e~iG~~G~KL 103 (614)
T PRK12308 24 RFDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLELALNELKLEVMEDPEQILLSDAEDIHSWVEQQLIGKVGDLGKKL 103 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 78899999998777999999987799899999999999999999998399335899853440899999999861544621
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56777077877899999851102467888888999987333201002101232102554222333445543100014889
Q gi|254780974|r 92 HQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRL 171 (435)
Q Consensus 92 H~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rl 171 (435)
|+||||||++.|.++|++|+.+..+...+..++++|.++|++|.+++||||||+|+|||+|||||+.+|++.|.||.+||
T Consensus 104 HTgRSRNDQVatd~RL~~r~~~~~i~~~l~~L~~~l~~~Ae~~~~~iMPGYTHLQ~AQPvt~~H~llAy~e~l~RD~~RL 183 (614)
T PRK12308 104 HTGRSRNDQVATDLKLWCRQQGQQLLLALDQLQQQMVNVAERHQGTVLPGYTHLQRAQPVTFAHWCLAYVEMFERDYSRL 183 (614)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 02467899999999999999999999999999999999999767982578656644211139999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9986431010011122222466466788655422578766352--02333334567788877644688999999995167
Q gi|254780974|r 172 LTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISS--QVIARDRHAMYFSVLGVIASSIERVATEIRHLQRT 249 (435)
Q Consensus 172 ~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~--~~~~rd~~~e~~~~l~~~~~~l~kia~Dl~~l~~~ 249 (435)
.++++|++.||||.+++. ++.+|.+|+.+|+.|||+.+..|+ .+.+||+.+|+++++++++.+|+|+++|+.+|+++
T Consensus 184 ~d~~~r~n~~PLGsgAlA-GT~~pIDR~~tA~~LGF~~~~~NSlDAVSdRDf~~E~l~~~s~~m~hLSRlaEdlIlwsS~ 262 (614)
T PRK12308 184 EDALTRLDTCPLGSGALA-GTAYPIDREALAHNLGFRRATRNSLDSVSDRDHVMELMSVASISMLHLSRLAEDLIFYNSG 262 (614)
T ss_pred HHHHHHHCCCCCCCCCCC-CCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999998575975431346-8989879999999759998667888898725899999999999999999999999998370
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHH
Q ss_conf 876000256446542012321024156787752112334310023---54311431354321015554172045789999
Q gi|254780974|r 250 EILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPA---MENVALWHERDISHSSVERVIGPDATIHLDFA 326 (435)
Q Consensus 250 eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~---~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~ 326 (435)
|||.|..|. ...+||||||||+||+.+|.+||.++.+.|...++ +.+.+..|++|++.... .+-+++..+..+
T Consensus 263 EFgfi~L~D-~~sTGSSIMPQKKNPDv~ELiRGK~Grv~G~L~~lLt~mKgLPlaYNkDlQEDKe---~lfda~dt~~~~ 338 (614)
T PRK12308 263 ESGFIELAD-TVTSGSSLMPQKKNPDALELIRGKTGRVYGALAGMMMTVKALPLAYNKDMQEDKE---GLFDALDTWNDC 338 (614)
T ss_pred CCCEEEECC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH---HHHHHHHHHHHH
T ss_conf 368487066-5544555577777986899988775324538999999976684211314320017---877689999999
Q ss_pred HHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHCCC
Q ss_conf 99987423100437357999986445837899999999872999899999999999999981999899985074323059
Q gi|254780974|r 327 LNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVL 406 (435)
Q Consensus 327 l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~l~~d~~i~~~l 406 (435)
+..+..++++++||+++|++.. ..|+..|++++++||++|+|||+||++|++++..|.++|++|.|+-+++..-...+
T Consensus 339 l~~~~~m~~~l~~n~e~m~~aa--~~gf~~ATdlADyLV~kGvPFReAH~ivG~~V~~a~~~g~~L~~L~L~e~q~~s~~ 416 (614)
T PRK12308 339 MEMAALCFDGIKVNGERTLEAA--KQGYANATELADYLVAKGIPFREAHHIVGVAVVGAIAKGCALEELSLEQLKEFSDV 416 (614)
T ss_pred HHHHHHHHHHCEECHHHHHHHH--HCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHCHH
T ss_conf 9999998743837899999885--35850289999999987997888899999999999981997000889999875602
Q ss_pred CHHHHHHHCCHHHHH-------CCHHHHHHHHHH
Q ss_conf 989999851889885-------019999999885
Q gi|254780974|r 407 SEKEICDKFDYKYHT-------KHVNAIFERVFQ 433 (435)
Q Consensus 407 ~~~eL~~~ldP~~~~-------g~a~~i~d~vl~ 433 (435)
-++++-+++++++.+ |-+++.|+.+++
T Consensus 417 i~~DVy~~L~~e~~v~~R~~~GGtap~qV~~ai~ 450 (614)
T PRK12308 417 IEDDVYQILTIESCLEKRCALGGVSPEQVAYAVK 450 (614)
T ss_pred HHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 2367988708998998723889999899999999
No 25
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=574.40 Aligned_cols=415 Identities=21% Similarity=0.190 Sum_probs=365.2
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH-HHHHHHHHHCCHHHCC
Q ss_conf 727958899999999999999977768999899999998300127898999988746378547-9999999867934322
Q gi|254780974|r 12 TLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVI-AFLTHLAEIIGPDARF 90 (435)
Q Consensus 12 ~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~-a~~~~l~~~~g~~~~~ 90 (435)
+|-.|...+.+-+..-.||+.++++.|+|+++++++|.+++....-++..-+........||+ +++..|.+++|+.|+|
T Consensus 24 Si~~D~~l~~~di~~s~Ah~~mL~~~Gii~~ee~~~Il~~L~~l~~e~~~g~~~~~~~~EDvH~aiE~~L~~~iG~~ggk 103 (459)
T COG0165 24 SISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILEGLEELLEEIRAGKFELDPDDEDVHTAIEARLIERIGDVGGK 103 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCH
T ss_conf 50267999999998759999999986998899999999999999998754886579860108999999999997442220
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55677707787789999985110246788888899998733320100210123210255422233344554310001488
Q gi|254780974|r 91 IHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKR 170 (435)
Q Consensus 91 iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~r 170 (435)
+|+||||||++.|.++|++|+.+..|...+..++++|.++|++|.+|+||||||+|+|||+||||++.+|.+.|.|+++|
T Consensus 104 LhtgRSRNDQVatd~rL~lr~~~~~l~~~i~~l~~aL~~~Ae~~~~~imPGyTHlQ~AQPvtf~H~llay~~~l~RD~~R 183 (459)
T COG0165 104 LHTGRSRNDQVATDLRLWLRDKLLELLELIRILQKALLDLAEEHAETVMPGYTHLQRAQPVTFAHHLLAYAEMLARDIER 183 (459)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 00245633899999999999999999999999999999999980687467854465357684999999999999989999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99986431010011122222466466788655422578766352--0233333456778887764468899999999516
Q gi|254780974|r 171 LLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISS--QVIARDRHAMYFSVLGVIASSIERVATEIRHLQR 248 (435)
Q Consensus 171 l~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~--~~~~rd~~~e~~~~l~~~~~~l~kia~Dl~~l~~ 248 (435)
+.+++++++.+|+|-+++ .++..|.+|+++|+.|||..+..|+ .+++||+++|+++++++++.+|+|||+|+.+|++
T Consensus 184 l~d~~~rvn~sPLGagAl-aGt~~~iDR~~tA~lLGF~~~~~Nsldavs~Rdf~le~l~~~a~~~~~LSRlaedlI~wss 262 (459)
T COG0165 184 LRDALKRVNVSPLGAGAL-AGTPFPIDRERTAELLGFDAVTRNSLDAVSDRDFILEFLSAAALIMVHLSRLAEDLILWSS 262 (459)
T ss_pred HHHHHHHHCCCCCCCCCC-CCCCCCCCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999998743598643456-7899988989999883981332173456652799999999999999999999999998705
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHH
Q ss_conf 787600025644654201232102415678775211233431002---35431143135432101555417204578999
Q gi|254780974|r 249 TEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIP---AMENVALWHERDISHSSVERVIGPDATIHLDF 325 (435)
Q Consensus 249 ~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~---~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~ 325 (435)
.|||.|..|.. ..+|||||||||||+.+|.+|+.+..+.|...+ ++.+.+..|+||++.... .+.+++..+..
T Consensus 263 ~EfgfI~l~D~-~sTGSSIMPQKKNPD~~ELiRgk~grv~G~l~~ll~~~k~lPlaYnrDlQedke---~lfds~~t~~~ 338 (459)
T COG0165 263 PEFGFIELPDE-FSTGSSIMPQKKNPDVLELIRGKAGRVIGALTGLLTIMKGLPLAYNRDLQEDKE---PLFDSVDTLED 338 (459)
T ss_pred CCCCEEECCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH---HHHHHHHHHHH
T ss_conf 46762767855-555666688888986899987755426989999999980686512477786338---89999999999
Q ss_pred HHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHCC
Q ss_conf 99998742310043735799998644583789999999987299989999999999999998199989998507432305
Q gi|254780974|r 326 ALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKV 405 (435)
Q Consensus 326 ~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~l~~d~~i~~~ 405 (435)
++..+..++++|+||+++|++.. ..|+.+++.+++.|+.+|+|||+||++|+++++.+.+.++++.++..++..-...
T Consensus 339 ~l~~~~~mv~~l~vn~e~~~~a~--~~gfs~aTdlAd~lv~kGvPFReAh~ivG~~v~~~~~~~~~l~~l~~~~~~~~~~ 416 (459)
T COG0165 339 SLRVLAGMVSGLTVNKERMREAA--EAGFSTATDLADYLVRKGVPFREAHEIVGEAVRRAEERGKDLADLSLEELQSISP 416 (459)
T ss_pred HHHHHHHHHCCCEECHHHHHHHH--HCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHCC
T ss_conf 99999998721745788899876--4362058999999987699879999999999999987499877502788863132
Q ss_pred CCHHHHHHHCCHHHHHC-------CHHHHHHHHHH
Q ss_conf 99899998518898850-------19999999885
Q gi|254780974|r 406 LSEKEICDKFDYKYHTK-------HVNAIFERVFQ 433 (435)
Q Consensus 406 l~~~eL~~~ldP~~~~g-------~a~~i~d~vl~ 433 (435)
+-++++.++++|+..+. .+++.|++.++
T Consensus 417 ~~~~dv~~~l~~~~~v~~R~~~Ggtap~~v~~~i~ 451 (459)
T COG0165 417 LIDEDVYEVLTPEESVAKRNSEGGTAPEEVREAIA 451 (459)
T ss_pred CCCHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 21168999846699998720469998899999999
No 26
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=0 Score=560.03 Aligned_cols=388 Identities=22% Similarity=0.240 Sum_probs=336.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHCCCHHHHHHHHHHHC----
Q ss_conf 5889999999999999997776899989999999830012-------78989999887463785479999999867----
Q gi|254780974|r 16 LETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNA-------VFNVDRIMELDSIIKHDVIAFLTHLAEII---- 84 (435)
Q Consensus 16 ~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~-------~~d~~~~~~~~~~~~~~v~a~~~~l~~~~---- 84 (435)
+...|+++..|++|+|.++.++|.++++-+++|.++|++. +|.++.++.+.++.-| |++.++++.++
T Consensus 42 ~~~~I~a~~~iK~aaA~~N~~~g~l~~~~~~aI~~A~~ei~~g~~~~~Fpvdv~Q~GsGTstN--MN~NEVian~a~e~l 119 (473)
T PRK13353 42 HEELIRAFAIVKKAAALANMDLGRLERNKAGAIVEAADEILDGKLHDQFIVDPIQGGAGTSMN--MNANEVIANRALELL 119 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHH
T ss_conf 999999999999999999998289999999999999999985997125887541179865353--409999999999994
Q ss_pred CHH-H--CCCC------CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 934-3--2255------677707787789999985110246788888899998733320100210123210255422233
Q gi|254780974|r 85 GPD-A--RFIH------QGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGL 155 (435)
Q Consensus 85 g~~-~--~~iH------~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~ 155 (435)
|.. | .+|| .|+||||++|||+++.....+..|.+.|..|+++|..||++|++++|+||||+|||+|+|||+
T Consensus 120 g~~~g~~~~vhPnDhVN~~QStND~~PTA~~ia~~~~~~~L~~~l~~L~~~L~~KA~e~~~ivkiGRTHlQdAvPiTlGq 199 (473)
T PRK13353 120 GGEKGDYHYVSPNDHVNMAQSTNDVFPTAIRIATLNLLEGLLQAMGALHDVFELKAEEFDHVIKMGRTHLQDAVPIRLGQ 199 (473)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHH
T ss_conf 78778888749764333434576367679999999999999999999999999999987411212522364553412799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHH----HHHCCCCCCCCC---CCHHHHHHHHHHHH
Q ss_conf 344554310001488999864310100111-2222246646678865----542257876635---20233333456778
Q gi|254780974|r 156 KLAMAYAEFSRSRKRLLTAREEIAVCAISG-SVGTFSNIHPYVEQHV----ADAMGLKTDPIS---SQVIARDRHAMYFS 227 (435)
Q Consensus 156 ~~~~~~~~l~r~~~rl~~~~~~~~~~~lgG-AvGt~~~~~~~~~~~~----a~~LGl~~~~~~---~~~~~rd~~~e~~~ 227 (435)
+|++|+.++.|+++||.++++++..+++|| ||||+.+.+|.+.+.+ ++.+|++..+.. .+..++|.++++.+
T Consensus 200 ef~~~a~~l~r~~~Rl~~~~~~l~~l~lGGTAVGTG~n~~~~~~~~v~~~L~~~tgl~~~~a~n~~~a~~~~D~~ve~s~ 279 (473)
T PRK13353 200 EFKAYSRVLERDMKRIQQSREHLYEVNLGATAVGTGLNADPEYIEAVVKHLAAITGLPLVGAEDLVDATQNTDAYVEVSA 279 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHHCCHHHHHHHH
T ss_conf 99999999999999999999998874478701267999982699999998998719996247888999967589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHC
Q ss_conf 88776446889999999951---678760002564465420123210241567877521123343100235431-14313
Q gi|254780974|r 228 VLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENV-ALWHE 303 (435)
Q Consensus 228 ~l~~~~~~l~kia~Dl~~l~---~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~-~~~~e 303 (435)
+|+.++++|+|||+|||+|+ ++|+||+.+| ..|+||||||||+||+.||.+.+.|.++.|+..++..+. ..++|
T Consensus 280 ~L~~lA~~L~KIanDiRlL~SGPr~GlgEi~lP--a~Q~GSSIMPgKvNPv~~E~v~~va~qV~Gnd~ti~~a~~~G~le 357 (473)
T PRK13353 280 ALKVCAMNLSKIANDLRLLASGPRTGLGEINLP--AVQPGSSIMPGKVNPVMPEVINQIAFQVIGNDHTICLAAEAGQLE 357 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHH
T ss_conf 999999999999999999757865560134569--998958888988697799999999999965186766524255456
Q ss_pred CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 54321015554172045789999999874231004373579999864458378999999998729998999999999999
Q gi|254780974|r 304 RDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAM 383 (435)
Q Consensus 304 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~ 383 (435)
.+...+.+.+.++..+..+.+++.....+|++||++|+++|++|++.+.++++ +|+|+ +| |+.++++++
T Consensus 358 LNv~~Pvi~~~ll~si~lL~~a~~~f~~~ci~Gi~~n~e~~~~~l~~S~~LvT------aL~p~-iG----Y~~aa~iak 426 (473)
T PRK13353 358 LNVMEPVIAFNLLQSISILTNGFRAFTDNCVKGIEANEERCKEYVEKSVGIIT------ALNPH-IG----YEAAARVAK 426 (473)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCHHH------HCCCH-HH----HHHHHHHHH
T ss_conf 52354078999999999999999999999884588889999999984805176------60526-63----999999999
Q ss_pred HHHHCCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHC
Q ss_conf 999819998999850743230599899998518898850
Q gi|254780974|r 384 KVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTK 422 (435)
Q Consensus 384 ~a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g 422 (435)
+|.++|++++|++++ .++|+++||+++|||++.+.
T Consensus 427 ~A~~~g~slre~~le----~~~lseeeld~lldP~~m~~ 461 (473)
T PRK13353 427 EAIATGQSVRELCLE----NGVLTEEELDLILDPFEMTH 461 (473)
T ss_pred HHHHHCCCHHHHHHH----CCCCCHHHHHHHCCHHHHCC
T ss_conf 999949989999988----49999999998679998479
No 27
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=100.00 E-value=0 Score=559.02 Aligned_cols=389 Identities=23% Similarity=0.238 Sum_probs=333.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHCCCHHHHHHHHHHHC----
Q ss_conf 588999999999999999777689998999999983001-------278989999887463785479999999867----
Q gi|254780974|r 16 LETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRN-------AVFNVDRIMELDSIIKHDVIAFLTHLAEII---- 84 (435)
Q Consensus 16 ~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~-------~~~d~~~~~~~~~~~~~~v~a~~~~l~~~~---- 84 (435)
+...|+++..|++|+|.++.++|.++++.+++|.++|++ .+|.++.++.+.++.-| |++.+++++++
T Consensus 41 ~~~~I~a~~~vK~AaA~aN~~~g~L~~~~a~aI~~A~~ei~~g~~~~~F~vdv~Q~GsGTstN--MN~NEVIAn~A~e~l 118 (462)
T PRK00485 41 PRELIRALALIKKAAAQVNAELGLLDAEKADAIVAAADEVLAGKHDDHFPLDVWQTGSGTQSN--MNVNEVIANRASELL 118 (462)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCC--CCHHHHHHHHHHHHH
T ss_conf 999999999999999999998499999999999999999984995014412111178875233--519999999999984
Q ss_pred CHH-HC--CCC------CCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 934-32--255------677707787789999985110-24678888889999873332010021012321025542223
Q gi|254780974|r 85 GPD-AR--FIH------QGMTSSDILDTCFSIQLMRST-DILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFG 154 (435)
Q Consensus 85 g~~-~~--~iH------~G~Ts~Di~~Ta~~l~~r~~l-~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G 154 (435)
|.. |. +|| .|+||||++|||+++.+...+ ..|.+.|..|+++|..||++|++++|+||||+|||+|+|||
T Consensus 119 g~~~g~~~~vhPnDhVN~~QStND~~PTA~~ia~~~~~~~~L~~al~~L~~~l~~Ka~e~~~~vk~GRTHLQdA~PiTlG 198 (462)
T PRK00485 119 GGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALAIVEHLLPALEHLRDTLAAKAEEFADIVKIGRTHLQDATPLTLG 198 (462)
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEECCHH
T ss_conf 87778888769300100123667653169999999999998999999999999999998545620052115437551179
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHH----HHHHHHCCCCCCCCCC---CHHHHHHHHHHH
Q ss_conf 3344554310001488999864310100111-2222246646678----8655422578766352---023333345677
Q gi|254780974|r 155 LKLAMAYAEFSRSRKRLLTAREEIAVCAISG-SVGTFSNIHPYVE----QHVADAMGLKTDPISS---QVIARDRHAMYF 226 (435)
Q Consensus 155 ~~~~~~~~~l~r~~~rl~~~~~~~~~~~lgG-AvGt~~~~~~~~~----~~~a~~LGl~~~~~~~---~~~~rd~~~e~~ 226 (435)
|+|++|++.+.|+++||.++++++..+|+|| ||||+.+.+|.+. +.+++.+||...+..+ +..+||.++++.
T Consensus 199 q~f~a~a~~l~r~~~Rl~~~~~~l~~l~lGGtAvGTGlna~~~f~~~v~~~L~~~tgl~~~~a~n~~~a~~~~D~~~e~~ 278 (462)
T PRK00485 199 QEFSGYAAQLEHGIERIEAALPHLYELALGGTAVGTGLNAHPGFAEKVAAELAELTGLPFVTAPNKFEALAAHDALVEAS 278 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHHCCCHHHHHH
T ss_conf 99999999999999999999999998743775323788888105899999999985999712687899985882999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHH-HHH
Q ss_conf 888776446889999999951---6787600025644654201232102415678775211233431002354311-431
Q gi|254780974|r 227 SVLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVA-LWH 302 (435)
Q Consensus 227 ~~l~~~~~~l~kia~Dl~~l~---~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~-~~~ 302 (435)
+.|+.++++|+|||+|+|+|+ ++|+|||.+| ..|+||||||||+||+.+|.+++.|.++.|+..++..+.. ..+
T Consensus 279 ~~L~~lA~~L~KianDlRll~SGPr~glgEi~lP--a~q~GSSIMPgKvNPvi~E~v~~v~~qV~Gnd~tv~~A~~~G~l 356 (462)
T PRK00485 279 GALKTLAVSLMKIANDIRWLASGPRCGLGEISLP--ENEPGSSIMPGKVNPTQCEALTMVCAQVMGNDAAVTFAGSQGNF 356 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHH
T ss_conf 9999999999999999999726876684145479--99998787899889778999998457640757999998751337
Q ss_pred CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 35432101555417204578999999987423100437357999986445837899999999872999899999999999
Q gi|254780974|r 303 ERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNA 382 (435)
Q Consensus 303 erd~~~~~~~~~~l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a 382 (435)
|.+...+.+.+..+..+..+.+++.....+|++||+||+++|++|++.+.+++ ++|+|+ +| |+.+++++
T Consensus 357 ELNv~~Pli~~~ll~si~lL~~a~~~f~~~cI~Gi~vn~e~~~~~l~~S~~l~------TaL~p~-iG----Y~~aa~ia 425 (462)
T PRK00485 357 ELNVFKPVIAYNFLQSIRLLADAMRSFADHCVVGIEPNEERIKELLERSLMLV------TALNPH-IG----YDKAAKIA 425 (462)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHCHHHH------HHCCCH-HH----HHHHHHHH
T ss_conf 76134628886157699999999999999987638878999999997574479------870427-64----99999999
Q ss_pred HHHHHCCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHCC
Q ss_conf 99998199989998507432305998999985188988501
Q gi|254780974|r 383 MKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTKH 423 (435)
Q Consensus 383 ~~a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g~ 423 (435)
++|.++|++++|++++ .+.|+++||+++|||+++++.
T Consensus 426 k~A~~~g~~lrev~le----~~~ls~eeld~lldP~~mt~P 462 (462)
T PRK00485 426 KKAHKEGLTLKEAALE----LGYLSEEEFDRWVDPEKMTGP 462 (462)
T ss_pred HHHHHHCCCHHHHHHH----CCCCCHHHHHHHCCHHHCCCC
T ss_conf 9999959989999988----599999999986699861898
No 28
>cd01362 Fumarase_classII Class II fumarases. This group contains proteins similar to Escherichia coli fumarase C and the human mitochondrial fumarase. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=0 Score=555.55 Aligned_cols=385 Identities=22% Similarity=0.230 Sum_probs=327.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHCCCHHHHHHHHHHHC----C
Q ss_conf 889999999999999997776899989999999830012-------78989999887463785479999999867----9
Q gi|254780974|r 17 ETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNA-------VFNVDRIMELDSIIKHDVIAFLTHLAEII----G 85 (435)
Q Consensus 17 ~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~-------~~d~~~~~~~~~~~~~~v~a~~~~l~~~~----g 85 (435)
...|+++..|++|+|.++.++|+++++.+++|.++|++. +|.++.++.+.++.-| |++.++++.++ |
T Consensus 38 ~~~I~a~~~vK~AaA~aN~~~G~L~~~~~~aI~~A~~ei~~g~~~~~F~vd~~Q~GaGTstN--MN~NEViAn~A~e~~g 115 (455)
T cd01362 38 RELIRALGLLKKAAAQANAELGLLDEEKADAIVQAADEVIAGKLDDHFPLVVWQTGSGTQTN--MNVNEVIANRAIELLG 115 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC--CHHHHHHHHHHHHHHC
T ss_conf 99999999999999999998599999999999999999984997135145200068876332--4099999999999847
Q ss_pred HH-H--CCCC------CCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 34-3--2255------677707787789999985110-246788888899998733320100210123210255422233
Q gi|254780974|r 86 PD-A--RFIH------QGMTSSDILDTCFSIQLMRST-DILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGL 155 (435)
Q Consensus 86 ~~-~--~~iH------~G~Ts~Di~~Ta~~l~~r~~l-~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~ 155 (435)
.. | .+|| .|+||||++|||+++.+...+ ..|.+.|..|+++|..||++|++++|+||||+|||+|+||||
T Consensus 116 ~~~g~~~~vhPndhVN~~QStND~~PTA~~ia~~~~l~~~L~~~l~~L~~~L~~Ka~e~~~~vk~GRTHLQdA~PiTlGq 195 (455)
T cd01362 116 GVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLPALKHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQ 195 (455)
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEHHH
T ss_conf 66788887693001002346676422799999999999999999999999999999984477400541363476600899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHH----HHHHHHCCCCCCCCCC---CHHHHHHHHHHHH
Q ss_conf 344554310001488999864310100111-2222246646678----8655422578766352---0233333456778
Q gi|254780974|r 156 KLAMAYAEFSRSRKRLLTAREEIAVCAISG-SVGTFSNIHPYVE----QHVADAMGLKTDPISS---QVIARDRHAMYFS 227 (435)
Q Consensus 156 ~~~~~~~~l~r~~~rl~~~~~~~~~~~lgG-AvGt~~~~~~~~~----~~~a~~LGl~~~~~~~---~~~~rd~~~e~~~ 227 (435)
+|++|++.|.|+++||.++++++..+|+|| ||||+.+.+|.+. +++++.+||+..+..+ +..+||.++++.+
T Consensus 196 ~f~a~a~~l~r~~~RL~~a~~~l~~~~lGGtAvGTG~n~~~~f~~~~~~~L~~~tgl~~~~a~n~~~a~~~~D~~ve~s~ 275 (455)
T cd01362 196 EFSGYAAQLEHAIARIEAALPRLYELALGGTAVGTGLNAHPGFAEKVAAELAELTGLPFVTAPNKFEALAAHDALVEASG 275 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHHCCCHHHHHHH
T ss_conf 99999998999999999999999986057744347878881267999999988629997116878999848709999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHC
Q ss_conf 88776446889999999951---6787600025644654201232102415678775211233431002354311-4313
Q gi|254780974|r 228 VLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVA-LWHE 303 (435)
Q Consensus 228 ~l~~~~~~l~kia~Dl~~l~---~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~-~~~e 303 (435)
+|+.++++|+|||+|||+|+ ++|||||.+| ..|+||||||||+||+.||.+++.|.++.|+..++..+.. ..+|
T Consensus 276 ~L~~lA~~L~KIanDirll~SGPr~gl~Ei~lP--~~q~GSSIMPgKvNPv~~E~v~~v~~~ViGnd~ti~~a~~~G~~E 353 (455)
T cd01362 276 ALKTLAVSLMKIANDIRWLGSGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEALTMVAAQVMGNDAAITIAGSSGNFE 353 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHH
T ss_conf 999999999999999999827765684355479--999977878998798899999999999966599999866353056
Q ss_pred CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 54321015554172045789999999874231004373579999864458378999999998729998999999999999
Q gi|254780974|r 304 RDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAM 383 (435)
Q Consensus 304 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~ 383 (435)
.+...+.+.+..+..+..+.+++.....+|++||+||+++|++|++.+.+++ ++|+|+ +|| +.++++++
T Consensus 354 LNv~~Plia~~ll~si~lL~~~~~~f~~~~i~gi~vn~e~~~~~l~~S~~l~------TaL~p~-iGY----~~aa~iak 422 (455)
T cd01362 354 LNVFKPVIIYNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLERSLMLV------TALNPH-IGY----DKAAKIAK 422 (455)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHCHHHH------HHHHHH-HHH----HHHHHHHH
T ss_conf 6422838999888899999999999999987658888999999998574389------883237-639----99999999
Q ss_pred HHHHCCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHH
Q ss_conf 9998199989998507432305998999985188988
Q gi|254780974|r 384 KVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYH 420 (435)
Q Consensus 384 ~a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~ 420 (435)
+|.++|++++|++++ .+.|+++||+++|||++.
T Consensus 423 ~A~~~g~slrev~le----~~~ls~eeld~lldP~~m 455 (455)
T cd01362 423 KAHKEGLTLKEAALE----LGYLTEEEFDRLVDPEKM 455 (455)
T ss_pred HHHHHCCCHHHHHHH----CCCCCHHHHHHHCCCCCC
T ss_conf 999939989999988----599999999986592129
No 29
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=541.44 Aligned_cols=397 Identities=18% Similarity=0.187 Sum_probs=347.1
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHHHHCCHH-HC
Q ss_conf 72795889999999999999997776899989999999830012-78989999887463785479999999867934-32
Q gi|254780974|r 12 TLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNA-VFNVDRIMELDSIIKHDVIAFLTHLAEIIGPD-AR 89 (435)
Q Consensus 12 ~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~-~~d~~~~~~~~~~~~~~v~a~~~~l~~~~g~~-~~ 89 (435)
..+-+-+.++++..|+.||..|+.+.|+++.+.+....++.... ..++..+....+..| +.+.++.+|.+++|++ |+
T Consensus 435 ~~~~~~~~~~~~~~i~~ahl~ml~~~gi~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~rg-~Yf~yE~~Lier~G~D~gG 513 (892)
T PRK02186 435 ASEAPLAELDHLAAIDEAHLVMLGDTGIVAPERARPLLDAHRRLRDAGFAPLLARPAPRG-LYMLYEAYLIERLGEDVGG 513 (892)
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCC-HHHHHHHHHHHHHCHHHCC
T ss_conf 333634555545221266757877627877788899999999877468344306878863-0137899999982801126
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25567770778778999998511024678888889999873332010021012321025542223334455431000148
Q gi|254780974|r 90 FIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRK 169 (435)
Q Consensus 90 ~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~ 169 (435)
++|.||||||++.|.++|++|+++..+...+..|+++|.++|++|.+|+||||||+|+|||+|||||+++|.+.|.||.+
T Consensus 514 ~LhtgRSRNDqvAT~~rl~lRd~~~~~~~~l~~L~~aL~~~Ae~~~~tvmPgyTHlQ~AQP~t~gH~Lla~~~~l~RD~~ 593 (892)
T PRK02186 514 VLQTARSRNDINATTTKLHLREATSRAFDALWRLRRALVFKASANVDCALPIYSQYQPALPGSLGHYLLAVDGALARETH 593 (892)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 25205334468999999999999999999999999999999986338652364457656741299999999999985999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899986431010011122222466466788655422578766352--023333345677888776446889999999951
Q gi|254780974|r 170 RLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISS--QVIARDRHAMYFSVLGVIASSIERVATEIRHLQ 247 (435)
Q Consensus 170 rl~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~--~~~~rd~~~e~~~~l~~~~~~l~kia~Dl~~l~ 247 (435)
||.+++++++.||||.++. .++.+|.+|+++|++|||..+..|| .+++||+.+|+.+++++++.+|+|+++|+++|+
T Consensus 594 Rl~~~~~r~n~~PLGa~Al-aGT~~piDr~~tA~lLGF~~~~~NSlDavs~RDf~~e~~~~~a~~~~~lsRlaeel~lws 672 (892)
T PRK02186 594 ALFALFEHIDVCPLGAGAG-GGTTFPIDPEFVARLLGFEQPAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQLWT 672 (892)
T ss_pred HHHHHHHCCCCCCCCCCCC-CCCCCCCCHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999983236698520002-589898698999998199875555312332118999999999999998889999999972
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHH---HHHHHHCCCCCCCHHHHHCCCCHHHHHH
Q ss_conf 6787600025644654201232102415678775211233431002354---3114313543210155541720457899
Q gi|254780974|r 248 RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAME---NVALWHERDISHSSVERVIGPDATIHLD 324 (435)
Q Consensus 248 ~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~---~~~~~~erd~~~~~~~~~~l~~~~~~~~ 324 (435)
+.|||.|..|.. ..+|||||||||||+.+|.+++.+..+.|.+.+++. +.+..|++|.+.-..+ .+.+++..+.
T Consensus 673 s~efgfi~l~D~-~~tgSSiMPQKkNPdvlElvRgKaGrviG~L~~lLt~lKglP~~yn~D~~~e~~~--~~~da~d~~~ 749 (892)
T PRK02186 673 TREFALVSLPDA-LTGGSSMLPQKKNPFLLEFVKGRAGVVAGALASASAALGKTPFSNSFEAGSPMNG--PIAQACAAIE 749 (892)
T ss_pred CCCCCEEECCCC-CCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH--HHHHHHHHHH
T ss_conf 325574876754-5445666786769718999732000038899999998635876334431222002--6899999999
Q ss_pred HHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHC-CHHH
Q ss_conf 99999874231004373579999864458378999999998-729998999999999999999819998999850-7432
Q gi|254780974|r 325 FALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALT-QAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLA-DVDI 402 (435)
Q Consensus 325 ~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~-~~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~l~~-d~~i 402 (435)
.++..+..++.++++|+++|++.. ..|+..++.+++.|| ++|+|||+||++|+++++.+.++|++-.+.+.+ ++..
T Consensus 750 ~~L~l~~~~v~~~~~~~~rM~~aa--~~gfstATdlAD~LVr~~GipFR~AH~iVG~~Vr~al~~g~~~~~~~~~~~~~~ 827 (892)
T PRK02186 750 DAAAVLVLLIDGLEADQARMRAHL--EDGGVSATAVAESLVVRRSISFRSAHTQVGQAIRQSLDQGRSSADALAALDPQF 827 (892)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHH--HCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
T ss_conf 999999999844850899999986--538716999999999864998789999999999999855998667898735242
Q ss_pred HCCCCHHHHHHHCC
Q ss_conf 30599899998518
Q gi|254780974|r 403 RKVLSEKEICDKFD 416 (435)
Q Consensus 403 ~~~l~~~eL~~~ld 416 (435)
.+.+.. |.+..+-
T Consensus 828 ~~~~~~-e~~~~~~ 840 (892)
T PRK02186 828 VSRAPL-EWARSHR 840 (892)
T ss_pred CCCCCH-HHHHHHH
T ss_conf 224876-7888865
No 30
>cd01357 Aspartatase Aspartase_like. This group contains proteins similar to aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=100.00 E-value=0 Score=541.80 Aligned_cols=382 Identities=20% Similarity=0.286 Sum_probs=321.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHCCCHHHHHHHHHHHC----
Q ss_conf 588999999999999999777689998999999983001-------278989999887463785479999999867----
Q gi|254780974|r 16 LETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRN-------AVFNVDRIMELDSIIKHDVIAFLTHLAEII---- 84 (435)
Q Consensus 16 ~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~-------~~~d~~~~~~~~~~~~~~v~a~~~~l~~~~---- 84 (435)
+...|+++..|++|.|.++.++|+++++-+++|.++|++ .+|.++.++.+.++.-| |++.++++.++
T Consensus 37 ~~~~i~a~~~vK~aaA~aN~~~g~l~~~~~~aI~~a~~ei~~g~~~d~Fp~~v~QtGsGTstN--MN~NEVIan~A~~~~ 114 (450)
T cd01357 37 HPELIRALAMVKKAAALANAELGLLDEEKAEAIVKACDEIIAGKLHDQFVVDVIQGGAGTSTN--MNANEVIANRALELL 114 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHH
T ss_conf 999999999999999999998099999999999999999985997546886331079865354--408999999999995
Q ss_pred CHH-H--CCCC------CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 934-3--2255------677707787789999985110246788888899998733320100210123210255422233
Q gi|254780974|r 85 GPD-A--RFIH------QGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGL 155 (435)
Q Consensus 85 g~~-~--~~iH------~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~ 155 (435)
|.. | .+|| .|+||||++|||+++.....+..|.+.|..|+++|..||++|++++|+||||+|||+|+||||
T Consensus 115 g~~~g~~~~vhPnDhVN~~QSsND~~PTA~~ia~~~~~~~L~pal~~l~~~L~~Ka~e~~~vik~GRTHLQdA~PiTlGq 194 (450)
T cd01357 115 GHEKGEYQYVHPNDHVNMSQSTNDVYPTALRLALILLLRKLLDALAALQEAFQAKAREFADVLKMGRTQLQDAVPMTLGQ 194 (450)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHCCCCEEEEHHH
T ss_conf 77778888769532235656776478789999999999999999999999999999984246310543346775400799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHH----HHHHHHCCCCCCCCC---CCHHHHHHHHHHHH
Q ss_conf 344554310001488999864310100111-2222246646678----865542257876635---20233333456778
Q gi|254780974|r 156 KLAMAYAEFSRSRKRLLTAREEIAVCAISG-SVGTFSNIHPYVE----QHVADAMGLKTDPIS---SQVIARDRHAMYFS 227 (435)
Q Consensus 156 ~~~~~~~~l~r~~~rl~~~~~~~~~~~lgG-AvGt~~~~~~~~~----~~~a~~LGl~~~~~~---~~~~~rd~~~e~~~ 227 (435)
+|++|++++.|+++||.++++++..+|+|| ||||+.+.+|.+. +.+++.+||...+.. .++.+||.++++.+
T Consensus 195 ~f~~~~~~l~r~~~Rl~~~~~rl~~l~lGGtAvGTG~na~~~~~~~~~~~L~~~tgl~~~~a~n~~~a~~~~D~~~e~~~ 274 (450)
T cd01357 195 EFGAYATALKRDRARIYKARERLREVNLGGTAIGTGINAPPGYIELVVEKLSEITGLPLKRAENLIDATQNTDAFVEVSG 274 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHHCCHHHHHHHH
T ss_conf 99999999999999999999998873577610027878993168999999999749997568888999957729999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHC
Q ss_conf 88776446889999999951---6787600025644654201232102415678775211233431002354311-4313
Q gi|254780974|r 228 VLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVA-LWHE 303 (435)
Q Consensus 228 ~l~~~~~~l~kia~Dl~~l~---~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~-~~~e 303 (435)
+|+.++++|+|||+|||+|+ ++|||||.+| ..|+||||||||+||+.||.+++.|.++.|+..++..+.. ..+|
T Consensus 275 ~L~~la~~L~KIa~Dirll~SGPr~g~~Ei~lP--~~q~GSSiMPgKvNPv~~E~v~~v~~qV~Gnd~~v~~a~~~G~le 352 (450)
T cd01357 275 ALKRLAVKLSKIANDLRLLSSGPRAGLGEINLP--AVQPGSSIMPGKVNPVIPEVVNQVAFQVIGNDLTITMAAEAGQLE 352 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHH
T ss_conf 999999999999999999736865672034569--999978888998797899999998999856199999874134367
Q ss_pred CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 54321015554172045789999999874231004373579999864458378999999998729998999999999999
Q gi|254780974|r 304 RDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAM 383 (435)
Q Consensus 304 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~ 383 (435)
.+...+...+..+..+-.+.+++......|++||+||++||++|++.+.+++ ++|+|+ +| |+.++++++
T Consensus 353 LNv~~P~i~~~ll~Si~lL~~a~~~f~~~cl~Gi~~N~er~~~~l~~s~~L~------TaL~p~-iG----Y~~aa~Iak 421 (450)
T cd01357 353 LNVFEPVIAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVENSIGIV------TALNPY-IG----YEAAAEIAK 421 (450)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCHH------HHHCHH-HH----HHHHHHHHH
T ss_conf 7601748899999999999999999999987648988999999998390169------983207-63----999999999
Q ss_pred HHHHCCCCHHHHHHCCHHHHCCCCHHHHHHHCC
Q ss_conf 999819998999850743230599899998518
Q gi|254780974|r 384 KVWKNGAIFLDVLLADVDIRKVLSEKEICDKFD 416 (435)
Q Consensus 384 ~a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ld 416 (435)
+|.++|++++|++.+ .++|+++|++++|+
T Consensus 422 ~A~~~g~tlre~~~e----~~~ls~ee~d~iln 450 (450)
T cd01357 422 EALETGRSVRELVLE----EGLLTEEELDEILS 450 (450)
T ss_pred HHHHHCCCHHHHHHH----CCCCCHHHHHHHHC
T ss_conf 999939979999988----49999999999849
No 31
>KOG2700 consensus
Probab=100.00 E-value=0 Score=542.40 Aligned_cols=430 Identities=27% Similarity=0.387 Sum_probs=406.9
Q ss_pred CCCCCC-HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHH
Q ss_conf 887498-78887279588999999999999999777689--998999999983001278989999887463785479999
Q gi|254780974|r 2 IPRYSR-TTMTTLWSLETKFRIWFEIEAHACDALAKLGV--IPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVIAFLT 78 (435)
Q Consensus 2 ~~ry~~-~e~~~ifs~~~~~~~~l~ve~A~a~a~~e~G~--ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~a~~~ 78 (435)
..||++ .+|..+||+.++++.|..+|..+|.+.+++|+ ||+++++++...++.+.+|+..+...++..+|||++++.
T Consensus 11 s~ry~~~~~l~~~~s~~~~~~twr~lw~~lA~ae~~lgL~~itk~ai~e~~s~~~~e~~d~~~l~~ee~r~~hdVmahvh 90 (481)
T KOG2700 11 SGRYASISELNPIFSDRNKFSTWRRLWLWLAEAEKELGLTTITKEAIEEMKSSRDIENIDFTALSPEEGRYRHDVMAHVH 90 (481)
T ss_pred CCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCHHHHHHCCCHHHHHH
T ss_conf 11202651210366666543126677886620231378521349999998852155254233338454130443899999
Q ss_pred HHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99986793432255677707787789999985110246788888899998733320100210123210255422233344
Q gi|254780974|r 79 HLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLA 158 (435)
Q Consensus 79 ~l~~~~g~~~~~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~ 158 (435)
.+++.|+-++++||+|+||+++.|.+..+.+|++.+++.+.|...++.+..++.+|++++|.||||+|+|+|+|||++.+
T Consensus 91 ~~~~~cp~aagiihlgatsc~vtdnadli~~rd~~k~i~~~l~~vIdrls~~~~~~k~~~~~g~Th~q~A~l~tfgkr~~ 170 (481)
T KOG2700 91 SFGELCPIAAGIIHLGATSCFVTDNADLIELRDASKLILPYLAGVIDRLSQFADKYKEKPTLGRTHLQPAQLTTFGKRMC 170 (481)
T ss_pred HHHHHCCHHCCEEEEEEEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHH
T ss_conf 99763630105477420236615784201304179999999999999999999871134001413675401557999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH----------HHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHH
Q ss_conf 55431000148899986431010011122222466466----------788655422578766352-0233333456778
Q gi|254780974|r 159 MAYAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIHPY----------VEQHVADAMGLKTDPISS-QVIARDRHAMYFS 227 (435)
Q Consensus 159 ~~~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~~~----------~~~~~a~~LGl~~~~~~~-~~~~rd~~~e~~~ 227 (435)
-|..+|.++++++..+.+++....++||.||..++... ..+.+++++||......| |.++|+.+.++..
T Consensus 171 ~~~qel~~~l~~f~~~~~~~~~~~~kga~gtqasf~~l~~~~~~kv~~ld~Lv~k~~gf~~~~~~TGQt~sr~~~~~~~~ 250 (481)
T KOG2700 171 LWIQELLRDLERFHRARTDVRFRGLKGATGTQASFLSLFLGDMDKVEKLDSLVTKELGFVPMYIVTGQTYSRKTDAEEVA 250 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 98999999999999863120015665213018888886335188899899999998188865544588678315789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHCCCC
Q ss_conf 887764468899999999516787600025644654201232102415678775211233431002354-3114313543
Q gi|254780974|r 228 VLGVIASSIERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAME-NVALWHERDI 306 (435)
Q Consensus 228 ~l~~~~~~l~kia~Dl~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~-~~~~~~erd~ 306 (435)
.|++++++..|+|.|+++++. ++|+.|||.++|+|||+||+||||+.||.++++++.++++...++. .+.+||||++
T Consensus 251 ~la~lgat~~k~~Tdirll~~--~~ev~epFea~q~gsSaMp~krNpm~~E~itslar~l~~~v~~al~~~~~qw~Ertl 328 (481)
T KOG2700 251 PLASLGATAHKYATDIRLLAK--FAEVEEPFEAHQIGSSAMPYKRNPMRCERITSLARHLRPYVTQALNTASVQWHERTL 328 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999888999999999999999--987525500155555568877787126787589999877777776667777765034
Q ss_pred CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-
Q ss_conf 2101555417204578999999987423100437357999986445837899999999872999899999999999999-
Q gi|254780974|r 307 SHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKV- 385 (435)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a- 385 (435)
++|.++|..+|+.|..+++.|....++++||.|.+++|.+|+....+++.+|+++++|+++|++|++||+.|+.++.++
T Consensus 329 ~dSa~~rivlP~~Fl~ad~~L~~~~ni~~gl~v~p~~i~r~i~~e~~~~~~eni~mAL~~~g~srq~ahe~I~~L~~~a~ 408 (481)
T KOG2700 329 DDSANRRIVLPDAFLTADGNLGTLLNILEGLVVYPKVIERNIRDELPFMVLENIIMALVKAGLSRQEAHEGIRKLSHQAA 408 (481)
T ss_pred CCCCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 53336533465888877889998898984100152788888876311899999999988700129999999999999888
Q ss_pred ---HHCCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHCCHHHHHHHHHH
Q ss_conf ---981999899985074323059989999851889885019999999885
Q gi|254780974|r 386 ---WKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTKHVNAIFERVFQ 433 (435)
Q Consensus 386 ---~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g~a~~i~d~vl~ 433 (435)
..++++..+..............+|++.+|||.+|+|.+...+.+.++
T Consensus 409 ~~v~~e~g~~~~ie~~k~~~~~~~v~ee~~~ll~p~~f~gra~dQie~~v~ 459 (481)
T KOG2700 409 QVVKQEGGDNDLIERAKEDPTFKPVKEELDSLLDPLNFTGRAVDQIEKFVP 459 (481)
T ss_pred HHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHCCCHHCCCCCHHHHHHHHH
T ss_conf 899986488178998302423462489998641602045210899998731
No 32
>TIGR00979 fumC_II fumarate hydratase, class II; InterPro: IPR005677 Fumarase C catalyzes the stereospecific interconversion of fumarate to L-malate as part of the metabolic citric acid or Kreb's cycle. The recent three-dimensional structure of fumarase C from Escherichia coli has identified a binding site for anions which is generated by side chains from three of the four subunits within the tetramer. These same side chains are found in the three most highly conserved regions within the class II fumarate hydratase family. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences.; GO: 0004333 fumarate hydratase activity, 0006106 fumarate metabolic process, 0045239 tricarboxylic acid cycle enzyme complex.
Probab=100.00 E-value=0 Score=538.69 Aligned_cols=388 Identities=21% Similarity=0.223 Sum_probs=340.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHCCCHHHHHHHHHHHC----
Q ss_conf 588999999999999999777689998999999983001-------278989999887463785479999999867----
Q gi|254780974|r 16 LETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRN-------AVFNVDRIMELDSIIKHDVIAFLTHLAEII---- 84 (435)
Q Consensus 16 ~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~-------~~~d~~~~~~~~~~~~~~v~a~~~~l~~~~---- 84 (435)
+...|+++..++++.|.++.++|.++.+.++.|.++||+ .+|++.-++.++++--| |++.++++.++
T Consensus 39 P~~lI~Afa~lKk~aA~~N~~LG~L~~~k~~~I~~A~DeiL~G~~~d~FPL~vWQTGSGTQsN--MN~NEViANrA~~~~ 116 (459)
T TIGR00979 39 PKELIRAFAILKKAAAIVNEDLGKLDAEKADAIAAAADEILAGKFDDHFPLVVWQTGSGTQSN--MNVNEVIANRAIELL 116 (459)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCC--CCHHHHHHHHHHHHH
T ss_conf 788999999999999999686279988899999998769873874477985378678774100--225899999999984
Q ss_pred CHH-H--CCCC------CCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 934-3--2255------677707787789999985110-24678888889999873332010021012321025542223
Q gi|254780974|r 85 GPD-A--RFIH------QGMTSSDILDTCFSIQLMRST-DILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFG 154 (435)
Q Consensus 85 g~~-~--~~iH------~G~Ts~Di~~Ta~~l~~r~~l-~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G 154 (435)
|.. | ..|| .++||||++||||++.....+ ..|+|.|..|..+|.+|+++|+++|++||||+|||+|.|+|
T Consensus 117 gG~~G~k~~iHPNDhVNkSQSSNDtFPTAMHIAAv~~~~~~LIP~L~~L~~~l~~Ks~~F~~ivKIGRTHLqDAtPLTLG 196 (459)
T TIGR00979 117 GGKLGSKKPIHPNDHVNKSQSSNDTFPTAMHIAAVLAIKEQLIPALENLKKTLDEKSKEFADIVKIGRTHLQDATPLTLG 196 (459)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHH
T ss_conf 77667888789876568887788876678999999999875316799999999999998608720056441324454002
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHC----CCCCCCCCC---CHHHHHHHHHHH
Q ss_conf 3344554310001488999864310100111-22222466466788655422----578766352---023333345677
Q gi|254780974|r 155 LKLAMAYAEFSRSRKRLLTAREEIAVCAISG-SVGTFSNIHPYVEQHVADAM----GLKTDPISS---QVIARDRHAMYF 226 (435)
Q Consensus 155 ~~~~~~~~~l~r~~~rl~~~~~~~~~~~lgG-AvGt~~~~~~~~~~~~a~~L----Gl~~~~~~~---~~~~rd~~~e~~ 226 (435)
|+||||...|.++++++..+.+.+..+.+|| |||||.|.+|.+.+++++++ |.+..+.+. .-++.|.+++..
T Consensus 197 QEfSGY~~qL~~~l~~i~~sL~~l~~LA~GGTAVGTGLN~~~~f~~Kv~~~~~~~T~~~F~~ApNKF~ALa~HDAiv~ah 276 (459)
T TIGR00979 197 QEFSGYVAQLEHGLERIEESLPHLYELALGGTAVGTGLNTHPGFDEKVAEEIAKFTGLPFVTAPNKFEALAAHDAIVEAH 276 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 45899999999999999999999999735773231566886667889999999973789989961677864458999864
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHH-HH
Q ss_conf 888776446889999999951---67876000256446542012321024156787752112334310023543114-31
Q gi|254780974|r 227 SVLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVAL-WH 302 (435)
Q Consensus 227 ~~l~~~~~~l~kia~Dl~~l~---~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~-~~ 302 (435)
++|..+|++|.|||+|||||. |+|+|||..| .+.|||||||+|+||.+||.+.++|.||.|+..++.-++++ .|
T Consensus 277 GaL~~LA~sL~KIAnD~R~LgSGPRCGlGEl~~P--ENEPGSSIMPGKVNPTQ~EalTMVC~QVmGNd~tI~~agS~GnF 354 (459)
T TIGR00979 277 GALKTLAASLMKIANDIRWLGSGPRCGLGELFLP--ENEPGSSIMPGKVNPTQCEALTMVCVQVMGNDATIGFAGSQGNF 354 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7899999988779877878507886420025677--78757876978987104358899888773002454533204653
Q ss_pred CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 35432101555417204578999999987423100437357999986445837899999999872999899999999999
Q gi|254780974|r 303 ERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNA 382 (435)
Q Consensus 303 erd~~~~~~~~~~l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a 382 (435)
|-..-...+..++|..+-++.++|-..-..|+.||+||.+|+.++|+.|..+++ +|+|| || ||..+++|
T Consensus 355 ELNVFkPViIyNfLqS~~LLsDa~~SF~~hcv~Gi~pN~~ri~~~l~~SLMLVT------ALNPh-iG----Yd~AakiA 423 (459)
T TIGR00979 355 ELNVFKPVIIYNFLQSVRLLSDAMESFREHCVVGIEPNKERIQQLLENSLMLVT------ALNPH-IG----YDNAAKIA 423 (459)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH------HHCCC-CC----HHHHHHHH
T ss_conf 123452589987998999999899988864012450245899999752113345------42354-57----47899999
Q ss_pred HHHHHCCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHC
Q ss_conf 9999819998999850743230599899998518898850
Q gi|254780974|r 383 MKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTK 422 (435)
Q Consensus 383 ~~a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g 422 (435)
+.|..+|.+|+|.+++ .++||++|+|+++-||.++|
T Consensus 424 K~Ahk~GitLKeaAl~----Lg~Lse~eFD~~V~PE~Mvg 459 (459)
T TIGR00979 424 KKAHKEGITLKEAALE----LGLLSEEEFDKWVVPEKMVG 459 (459)
T ss_pred HHHHHCCCCHHHHHHH----CCCCCHHHCCCCCCCCCCCC
T ss_conf 9997439777899974----48978688278279862679
No 33
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=0 Score=525.04 Aligned_cols=384 Identities=22% Similarity=0.283 Sum_probs=327.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHCCCHHHHHHHHHHHC----C
Q ss_conf 88999999999999999777689998999999983001-------278989999887463785479999999867----9
Q gi|254780974|r 17 ETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRN-------AVFNVDRIMELDSIIKHDVIAFLTHLAEII----G 85 (435)
Q Consensus 17 ~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~-------~~~d~~~~~~~~~~~~~~v~a~~~~l~~~~----g 85 (435)
...|+++..|++|+|+++.++|+++++-+++|.++|++ .+|.++.++.+.++.-| |++.++++.++ |
T Consensus 45 ~~~I~A~~~iK~AaA~aN~~lg~L~~~~a~aI~~A~~ei~~G~~~~~Fpvdv~QtGsGTstN--MNvNEVIAnrA~e~lg 122 (471)
T PRK12273 45 PELIRALAMVKKAAALANKELGLLDEEKADAIVAACDEILAGKLHDQFVVDVIQGGAGTSTN--MNANEVIANRALELLG 122 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEHHCCCCCCCCC--CCHHHHHHHHHHHHHC
T ss_conf 89999999999999999998289999999999999999984986203402010278876667--6289999999999938
Q ss_pred HH-HC--CCC------CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34-32--255------6777077877899999851102467888888999987333201002101232102554222333
Q gi|254780974|r 86 PD-AR--FIH------QGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLK 156 (435)
Q Consensus 86 ~~-~~--~iH------~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~ 156 (435)
.. |. .|| .|+||||++|||+++.....+..|.+.|..|+++|..++.+|++++++||||+|+|+|+|||++
T Consensus 123 ~~~G~~~~vHPNDhVN~~QSsND~~PTA~~ia~~~~~~~L~pal~~L~~~l~~Ka~~f~~iiK~GRTHLqDA~PitlGQe 202 (471)
T PRK12273 123 HEKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSLRKLLDALEQLIEAFEAKAKEFADILKMGRTQLQDAVPMTLGQE 202 (471)
T ss_pred CCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHH
T ss_conf 87788887483258763246666320899999999999999999999999999999973235305201566533120778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHC----CCCCCCCCC---CHHHHHHHHHHHHH
Q ss_conf 44554310001488999864310100111-22222466466788655422----578766352---02333334567788
Q gi|254780974|r 157 LAMAYAEFSRSRKRLLTAREEIAVCAISG-SVGTFSNIHPYVEQHVADAM----GLKTDPISS---QVIARDRHAMYFSV 228 (435)
Q Consensus 157 ~~~~~~~l~r~~~rl~~~~~~~~~~~lgG-AvGt~~~~~~~~~~~~a~~L----Gl~~~~~~~---~~~~rd~~~e~~~~ 228 (435)
|++|+..+.|+++||..+.+++..+|+|| ||||+.+.+|.+.+.+++.| |+...+... ...++|.++++.+.
T Consensus 203 f~aya~~l~~~~~rl~~~~~~l~~l~lGGTAVGTGlna~~~f~~~v~~~L~~~tgl~f~~a~n~f~a~~~~D~~v~~sg~ 282 (471)
T PRK12273 203 FGAFAVALAEDIKRLEEAAELLREVNLGATAIGTGINAPPGYAELVVKKLAEITGLPLVPAEDLIEATQDCGAFVEVSGA 282 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHCCCCHHHHHHHH
T ss_conf 99999999999999999999987536875100467788820899999999999789964578899997288199999999
Q ss_pred HHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHCC
Q ss_conf 8776446889999999951---67876000256446542012321024156787752112334310023543114-3135
Q gi|254780974|r 229 LGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVAL-WHER 304 (435)
Q Consensus 229 l~~~~~~l~kia~Dl~~l~---~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~-~~er 304 (435)
|..++++|.|||+|+|+|+ ++|+||+.+| +.|+||||||||+||+.||.+.+.|.++.|+..++..+..+ .+|
T Consensus 283 Lk~lA~~L~KIAnDlRlL~SGPr~GlgEi~LP--a~qpGSSIMPGKVNPv~~E~~~mv~~qViGnd~aIt~A~~~G~~E- 359 (471)
T PRK12273 283 LKRLAVKLSKICNDLRLLSSGPRAGLNEINLP--AVQAGSSIMPGKVNPVIPEVVNQVCFQVIGNDLTVTMAAEAGQLQ- 359 (471)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCHH-
T ss_conf 99999999999988888706876675400378--899987778999896789999999999974459999985455067-
Q ss_pred CCCCCHHHHHCCC----CHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 4321015554172----045789999999874231004373579999864458378999999998729998999999999
Q gi|254780974|r 305 DISHSSVERVIGP----DATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQR 380 (435)
Q Consensus 305 d~~~~~~~~~~l~----~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~ 380 (435)
.+..++++.. .+-.+.+++-....+|++||+||++||+++++.|.+++ ++|+|+ +| |+.+.+
T Consensus 360 ---LNv~~PlIa~nll~Si~lL~~a~~~f~~~ci~Gi~~n~e~~~~~l~~S~~lv------TaL~p~-IG----Yd~aa~ 425 (471)
T PRK12273 360 ---LNVMEPVIAYALFESISILTNACRTLREKCIDGITANEERCREYVENSIGIV------TALNPY-IG----YENAAE 425 (471)
T ss_pred ---HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHCHHHH------HHCCCH-HC----HHHHHH
T ss_conf ---6513609999999999999999999999875657778999999997483247------553450-15----799999
Q ss_pred HHHHHHHCCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHCC
Q ss_conf 9999998199989998507432305998999985188988501
Q gi|254780974|r 381 NAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTKH 423 (435)
Q Consensus 381 ~a~~a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g~ 423 (435)
++++|.++|++++|++++ .+.|+++|+++++||++.++.
T Consensus 426 iak~A~~~g~slre~~le----~~~ls~~e~d~ildP~~mt~p 464 (471)
T PRK12273 426 IAKEALETGKSVRELVLE----RGLLTEEELDDILSPENMTHP 464 (471)
T ss_pred HHHHHHHHCCCHHHHHHH----CCCCCHHHHHHHCCHHHHCCC
T ss_conf 999999929989999988----599999999986699984799
No 34
>cd01596 Aspartatase_like Aspartase_like. This group contains proteins similar to aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=0 Score=519.82 Aligned_cols=382 Identities=22% Similarity=0.257 Sum_probs=313.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHCCCHHHHHHHHHHHC----
Q ss_conf 5889999999999999997776899989999999830012-------78989999887463785479999999867----
Q gi|254780974|r 16 LETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNA-------VFNVDRIMELDSIIKHDVIAFLTHLAEII---- 84 (435)
Q Consensus 16 ~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~-------~~d~~~~~~~~~~~~~~v~a~~~~l~~~~---- 84 (435)
+...|+++..|++|+|.++.++|.++++-+++|.++|++. +|.++.++.+.++.-| |++.++++.++
T Consensus 37 ~~~~I~a~~~vK~AaA~aN~~~g~L~~~~~~aI~~Ac~ei~~g~~~~~F~vdv~Q~GsGTstN--MN~NEVIAn~A~e~l 114 (450)
T cd01596 37 PPELIRALALVKKAAALANAELGLLDEEKADAIVQACDEVIAGKLDDQFPLDVWQTGSGTSTN--MNVNEVIANRALELL 114 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHCEEHHHCCCCCCCCC--CHHHHHHHHHHHHHH
T ss_conf 999999999999999999998099999999999999999984996430411032078976454--418999999999983
Q ss_pred CHH-HCC-CC------CCCCCHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 934-322-55------6777077877899-99985110246788888899998733320100210123210255422233
Q gi|254780974|r 85 GPD-ARF-IH------QGMTSSDILDTCF-SIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGL 155 (435)
Q Consensus 85 g~~-~~~-iH------~G~Ts~Di~~Ta~-~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~ 155 (435)
|.. |.| +| .+++|||.++|+. ++.+...+..|.+.|..|+++|..|+++|++++|+||||+|||+|+|||+
T Consensus 115 g~~~g~~~~~~~d~~~~~qsSnd~~~~a~~~~a~~~~~~~L~~al~~L~~~l~~Ka~e~~~iik~GRTHLQdA~PiTlGq 194 (450)
T cd01596 115 GGKKGKYPVHPNDDVNNSQSSNDDFPPAAHIAAALALLERLLPALEQLQDALDAKAEEFADIVKIGRTHLQDAVPLTLGQ 194 (450)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEECCHHH
T ss_conf 88778777889832356678888299999999999999999999999999999999974697643544464163352899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHH----HHHHHHCCCCCCCCC---CCHHHHHHHHHHHH
Q ss_conf 344554310001488999864310100111-2222246646678----865542257876635---20233333456778
Q gi|254780974|r 156 KLAMAYAEFSRSRKRLLTAREEIAVCAISG-SVGTFSNIHPYVE----QHVADAMGLKTDPIS---SQVIARDRHAMYFS 227 (435)
Q Consensus 156 ~~~~~~~~l~r~~~rl~~~~~~~~~~~lgG-AvGt~~~~~~~~~----~~~a~~LGl~~~~~~---~~~~~rd~~~e~~~ 227 (435)
+|++|++.+.|+++||.++++++..+|+|| ||||+.+.++.+. +.+++.+||+..+.. .++.+||.++++.+
T Consensus 195 ef~~~a~~l~r~~~RL~~~~~~l~~l~lGGtAvGTG~na~~~~~~~v~~~L~~~tgl~~~~a~n~~~a~~~rD~~ve~s~ 274 (450)
T cd01596 195 EFSGYAAQLARDIARIEAALERLRELNLGGTAVGTGLNAPPGYAEKVAAELAELTGLPFVTAPNLFEATAAHDALVEVSG 274 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCEECCCHHHHHCCCCHHHHHHH
T ss_conf 99999999999999999999999875388762107888981278999999999859997137879999818839999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHC
Q ss_conf 88776446889999999951---67876000256446542012321024156787752112334310023543114-313
Q gi|254780974|r 228 VLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVAL-WHE 303 (435)
Q Consensus 228 ~l~~~~~~l~kia~Dl~~l~---~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~-~~e 303 (435)
+|+.++++|+|||+|||+|+ ++|||||.+| ..|+||||||||+||+.||.+.+.|.++.|+..++..+... .+|
T Consensus 275 ~L~~lA~~L~KIanDirll~SGPr~gl~Ei~lP--~~q~GSSiMPgKvNPv~~E~v~~v~~qViGnd~ti~~A~~~G~lE 352 (450)
T cd01596 275 ALKTLAVSLSKIANDLRLLSSGPRAGLGEINLP--ANQPGSSIMPGKVNPVIPEAVNMVAAQVIGNDTAITMAGSAGQLE 352 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHH
T ss_conf 999999999999999999716876786123469--999988888999897799999998999963517877876302367
Q ss_pred CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 54321015554172045789999999874231004373579999864458378999999998729998999999999999
Q gi|254780974|r 304 RDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAM 383 (435)
Q Consensus 304 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~ 383 (435)
.......+....+..+..+.+++.....+|++||+||+++|++|++.|.++++ +|+|+ +||..|++ +++
T Consensus 353 LNv~~Plia~~ll~si~lL~~a~~~f~~~ci~Gi~vn~e~~~~~l~~S~~LvT------aL~p~-iGY~~aa~----Iak 421 (450)
T cd01596 353 LNVFKPVIAYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEYVENSLMLVT------ALNPH-IGYEKAAE----IAK 421 (450)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCHHH------HHCCH-HHHHHHHH----HHH
T ss_conf 62034389999999999999999999999876589989999999984830898------83318-63999999----999
Q ss_pred HHHHCCCCHHHHHHCCHHHHCCCCHHHHHHHCC
Q ss_conf 999819998999850743230599899998518
Q gi|254780974|r 384 KVWKNGAIFLDVLLADVDIRKVLSEKEICDKFD 416 (435)
Q Consensus 384 ~a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ld 416 (435)
+|.++|++++|++++ .+.++++|++++||
T Consensus 422 ~A~~~g~sl~e~~le----~~~ls~ee~d~lld 450 (450)
T cd01596 422 EALKEGRTLREAALE----LGLLTEEELDEILD 450 (450)
T ss_pred HHHHHCCCHHHHHHH----CCCCCHHHHHHHHC
T ss_conf 999939989999988----59999999999749
No 35
>PRK12425 fumarate hydratase; Provisional
Probab=100.00 E-value=0 Score=514.18 Aligned_cols=388 Identities=19% Similarity=0.184 Sum_probs=332.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHCCCHHHHHHHHHHHC----C
Q ss_conf 889999999999999997776899989999999830012-------78989999887463785479999999867----9
Q gi|254780974|r 17 ETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNA-------VFNVDRIMELDSIIKHDVIAFLTHLAEII----G 85 (435)
Q Consensus 17 ~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~-------~~d~~~~~~~~~~~~~~v~a~~~~l~~~~----g 85 (435)
...|+++..|++|+|+++.++|.++++-+++|.++|++. +|.++.++.+.++.-| |++.+++++++ |
T Consensus 40 ~~~I~A~~~vKkAaA~aN~~~G~L~~~~~~aI~~Acdei~~g~~~~~Fpvdv~Q~GsGTstN--MNvNEVIAnrA~e~lg 117 (464)
T PRK12425 40 LAVLHALALIKKAAARVNDRNGDLPADIARLIEQAADEVLDGQHDDQFPLVVWQTGSGTQSN--MNVNEVIAGRANELAG 117 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHC--CHHHHHHHHHHHHHHC
T ss_conf 99999999999999999998099999999999999999985997024887110079841200--5199999999999847
Q ss_pred HH-HC--CCC------CCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 34-32--255------677707787789999985110-246788888899998733320100210123210255422233
Q gi|254780974|r 86 PD-AR--FIH------QGMTSSDILDTCFSIQLMRST-DILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGL 155 (435)
Q Consensus 86 ~~-~~--~iH------~G~Ts~Di~~Ta~~l~~r~~l-~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~ 155 (435)
.. |. +|| .|+||||++|||+++.+...+ ..|.+.|..|.++|..|+++|++++++||||+|||+|+|||+
T Consensus 118 ~~~G~~~~vhPNDhVN~sQStND~~PTA~~ia~~~~l~~~L~pal~~L~~~l~~Ka~ef~~iiK~GRThLqDAvP~tlGQ 197 (464)
T PRK12425 118 NGRGGKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQLLPAIAELSSGLAELSARHAKLVKTGRTHMMDATPITFGQ 197 (464)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHH
T ss_conf 77788887594322355456764787799999999999999999999999999999986133012634045567363788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHH----HHHHCCCCCCCCCC---CHHHHHHHHHHHH
Q ss_conf 344554310001488999864310100111-222224664667886----55422578766352---0233333456778
Q gi|254780974|r 156 KLAMAYAEFSRSRKRLLTAREEIAVCAISG-SVGTFSNIHPYVEQH----VADAMGLKTDPISS---QVIARDRHAMYFS 227 (435)
Q Consensus 156 ~~~~~~~~l~r~~~rl~~~~~~~~~~~lgG-AvGt~~~~~~~~~~~----~a~~LGl~~~~~~~---~~~~rd~~~e~~~ 227 (435)
+|++|+..+.++++||.++.+++..+++|| ||||+.+.+|.+.+. +++..|++..+... ...++|.++++.+
T Consensus 198 ef~~~a~~l~~~~~rl~~~~~~l~~l~lGgTAVGTGina~~~f~~~~~~~L~~~tgl~~~~a~n~~~a~~~~d~~v~~sg 277 (464)
T PRK12425 198 ELSAFVAQLDYAERAIRAALPAVYELAQGGTAVGTGLNAPKGFAEAIAAELAALSGLPFVTAPNKFAALAGHEPLTSLSG 277 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCHHHHHCCCCHHHHHHH
T ss_conf 99999999999999999999999985277621146888857699999999999749996347879999717868999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHC
Q ss_conf 887764468899999999516---78760002564465420123210241567877521123343100235431-14313
Q gi|254780974|r 228 VLGVIASSIERVATEIRHLQR---TEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENV-ALWHE 303 (435)
Q Consensus 228 ~l~~~~~~l~kia~Dl~~l~~---~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~-~~~~e 303 (435)
.|..++.+|.|||+|||+|++ +|+||+.+| +.|+||||||+|+||+.||.+.+.|.++.|...++..+. ..++|
T Consensus 278 ~Lk~lA~~L~KIanDlRlL~SGPr~GlgEi~LP--~~qpGSSIMPGKVNPvi~E~v~qv~~qViGnd~tit~a~~~Gq~e 355 (464)
T PRK12425 278 ALKTLAVALMKIANDLRLLGSGPRAGLAEVRLP--ANEPGSSIMPGKVNPTQCEALSMLACQVMGNDATIGFAASQGHLQ 355 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHCCEEEECCHHHHHHHHHHCCHH
T ss_conf 999999999999988777637865676512489--999987778998798888886527415454729999877604457
Q ss_pred CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 54321015554172045789999999874231004373579999864458378999999998729998999999999999
Q gi|254780974|r 304 RDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAM 383 (435)
Q Consensus 304 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~ 383 (435)
.+.....+...++..+..+.+++-....+|++||++|+++|+++++.|.+++ ++|.|+ +| |+...++++
T Consensus 356 LNv~~Plia~nll~Si~lL~~a~~~f~~~ci~Gi~~N~e~~~~~~~~S~~lv------TaL~P~-IG----Y~~aa~Iak 424 (464)
T PRK12425 356 LNVFKPVIIHNLLQSIRLLADGCRNFNQHCVAGLEPDAEQMAAHLERGLMLV------TALNPH-IG----YDKAAEIAK 424 (464)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHCHHHH------HHCCCH-HC----HHHHHHHHH
T ss_conf 6420278887436799999999999999987628888999999998475688------760340-16----699999999
Q ss_pred HHHHCCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHCC
Q ss_conf 9998199989998507432305998999985188988501
Q gi|254780974|r 384 KVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTKH 423 (435)
Q Consensus 384 ~a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g~ 423 (435)
+|.++|++++|++++ .++++++|+++++||+++++.
T Consensus 425 ~A~~~g~sl~e~~le----~g~ls~ee~d~il~P~~m~~p 460 (464)
T PRK12425 425 KAYAEGTTLREAALE----LGYLTEEQFDQWVRPENMLEA 460 (464)
T ss_pred HHHHHCCCHHHHHHH----CCCCCHHHHHHHCCHHHHCCC
T ss_conf 999939989999988----599999999986799984689
No 36
>PRK06389 argininosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=507.57 Aligned_cols=395 Identities=13% Similarity=0.016 Sum_probs=319.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH-HHHHHHHHHCCHHHCCCCCC
Q ss_conf 58899999999999999977768999899999998300127898999988746378547-99999998679343225567
Q gi|254780974|r 16 LETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVI-AFLTHLAEIIGPDARFIHQG 94 (435)
Q Consensus 16 ~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~-a~~~~l~~~~g~~~~~iH~G 94 (435)
|...+.+-+.--.||++++++.|+|+++.+++|..++....-+ ...-...-.||+ +++..|.+++|+.|+++|+|
T Consensus 28 D~~L~~~DI~gS~AHa~mL~~~giit~~e~~~I~~~L~~i~~~----~~~~~~~~EDiH~~iE~~L~e~iGd~g~klHTg 103 (434)
T PRK06389 28 DKNLIKYEIINLLAYHVALAQRRLITEKAPKCVINALIDIYKN----GIEIDLDLEDVHTAIENFVIRRCGDMFKNFRLF 103 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC----CCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCC
T ss_conf 9999999998769999999987998999999999999999909----985799865557999999999970654311203
Q ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77077877899999851102467888888999987333201002101232102554222333445543100014889998
Q gi|254780974|r 95 MTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTA 174 (435)
Q Consensus 95 ~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~ 174 (435)
|||||++.|.++|++|+.+..+...+..++.++.+ .|.+++||||||+|+|||+|||||+.+|++.|.|+.+||.++
T Consensus 104 RSRNDQVatd~RL~lr~~~~~l~~~l~~l~~~l~~---~~~~~~mPGYTHlQ~AQP~t~~h~l~a~~e~l~rD~~rL~~~ 180 (434)
T PRK06389 104 LSRNEQVHADLNLFIIDKIIEIEKILYEIIKVIPG---FNLKGRLPGYTHFRQAMPMTVNTYINYIKSILYHHINNLDSF 180 (434)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56889999999999999999999999999999997---541663677422232401217899999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6431010011122222466466788655422578766352--02333334-56778887764468899999999516787
Q gi|254780974|r 175 REEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISS--QVIARDRH-AMYFSVLGVIASSIERVATEIRHLQRTEI 251 (435)
Q Consensus 175 ~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~--~~~~rd~~-~e~~~~l~~~~~~l~kia~Dl~~l~~~ei 251 (435)
+++++.||||.++|.| +.+|.+|+++|++|||..+..++ .+.+||.. .++.++++.++.+|+|+|+|+.+|++.
T Consensus 181 ~~r~n~~PLGsgA~aG-t~~piDR~~~a~~LGF~~~~~Nsl~a~s~r~~~~~~~~~~~s~~~~~LSRlaeDlilwss~-- 257 (434)
T PRK06389 181 LMDLREMPYGYGSGYG-SPSSVKFNQMSELLGMEKNIKNPVYSSSLYIKTIENISYLISSLAVDLSRICQDIIIYYEN-- 257 (434)
T ss_pred HHHHCCCCCCCCCCCC-CCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_conf 9861448753000258-8887688999998299976555188886008999999999999999999999999998168--
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 6000256446542012321024156787752112334310023---5431143135432101555417204578999999
Q gi|254780974|r 252 LEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPA---MENVALWHERDISHSSVERVIGPDATIHLDFALN 328 (435)
Q Consensus 252 gei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~---~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~ 328 (435)
|.|..|. ...+|||||||||||+.+|.+||.+..+.|....+ +.+.+..|+||++.... .+-+++..+..++.
T Consensus 258 gfv~l~d-~~~tGSSIMPQKkNPD~lELiRgk~g~v~G~l~~ll~~~kgLP~~YnrDlQedKe---~lfds~d~~~~~L~ 333 (434)
T PRK06389 258 GIITIPD-EFTTGSSLMPNKRNPDYLELFQGIAAESISVLSFIAQSELNKTTGYHRDFQIVKD---STISFINNFERILL 333 (434)
T ss_pred CCEEECC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCHH---HHHHHHHHHHHHHH
T ss_conf 8487576-4433556687777984999998888778779999999980686511146662208---88779999999999
Q ss_pred HHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHC--CHHHHCCC
Q ss_conf 9874231004373579999864458378999999998729998999999999999999819998999850--74323059
Q gi|254780974|r 329 RLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLA--DVDIRKVL 406 (435)
Q Consensus 329 ~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~l~~--d~~i~~~l 406 (435)
.+..++++++||+++|+.. .+.++|+.++..|+++|+|||+||++|+++++.+.+-.....+-+.. +......
T Consensus 334 i~~~~i~~i~~~~~~~~~~----~~~~~ATd~A~~lv~kGvPFReAh~ivG~~Vr~~e~l~~~~~edl~d~l~~~~l~~- 408 (434)
T PRK06389 334 GLPDLLYNIKFEITNEKNI----KNSVYATYNAWLAFKNGMDWKSAYAYIGNKIREGEVLDEYQPEDLTDYIDVNELKR- 408 (434)
T ss_pred HHHHHHHHCCCCHHHHHHH----CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHH-
T ss_conf 9999997588188999853----05553159999999879987999999999999888753047377886504898976-
Q ss_pred CHHHHHHHCCHHHHH-CCHHHHHH
Q ss_conf 989999851889885-01999999
Q gi|254780974|r 407 SEKEICDKFDYKYHT-KHVNAIFE 429 (435)
Q Consensus 407 ~~~eL~~~ldP~~~~-g~a~~i~d 429 (435)
-+.++..+++|..++ ..+..++.
T Consensus 409 i~~~ik~~~~~~~~~~~~~~~~~~ 432 (434)
T PRK06389 409 INHNIKIIIEPREKLIEYAENLIK 432 (434)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 325578771689999999999974
No 37
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=100.00 E-value=0 Score=485.96 Aligned_cols=389 Identities=23% Similarity=0.259 Sum_probs=336.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHCCCHHHHHHHHHHH----C
Q ss_conf 588999999999999999777689998999999983001-------27898999988746378547999999986----7
Q gi|254780974|r 16 LETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRN-------AVFNVDRIMELDSIIKHDVIAFLTHLAEI----I 84 (435)
Q Consensus 16 ~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~-------~~~d~~~~~~~~~~~~~~v~a~~~~l~~~----~ 84 (435)
+...|+++..+++|.|+++.++|.+|++.+++|..+|++ .+|+++..+.++++.-| |+..++++.+ +
T Consensus 40 p~~~I~Al~~lKkaaA~~N~~LG~L~~~~a~aI~~Aadev~~Gk~d~~FPl~VwQTGSGTqsN--MN~NEVIAnrA~e~~ 117 (462)
T COG0114 40 PREIIRALGLLKKAAAQVNADLGLLDPEKADAIIAAADEVLAGKHDDHFPLDVWQTGSGTQSN--MNVNEVIANRASELL 117 (462)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC--CCHHHHHHHHHHHHH
T ss_conf 499999999999999998898279998999999999999975866677876887559986344--628999999999983
Q ss_pred CHH-H--CCCC------CCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 934-3--2255------677707787789999985110-24678888889999873332010021012321025542223
Q gi|254780974|r 85 GPD-A--RFIH------QGMTSSDILDTCFSIQLMRST-DILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFG 154 (435)
Q Consensus 85 g~~-~--~~iH------~G~Ts~Di~~Ta~~l~~r~~l-~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G 154 (435)
|.. | .-|| .|+||||++||++++....++ ..|++.|..|.++|..++++|++++++||||+|+|+|.|||
T Consensus 118 gg~~g~~~~VHPNDhVN~sQSSNDtfPTAmhIAa~~~v~~~LiPaL~~L~~~L~~Ka~~~~~iVKiGRTHLqDAtPlTlG 197 (462)
T COG0114 118 GGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNRLIPALKHLIKTLAAKAEEFADVVKIGRTHLQDATPLTLG 197 (462)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 75457788879986677656567620369999999999987579999999999999999864553273103445763244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHC----CCCCCCCCC---CHHHHHHHHHHH
Q ss_conf 3344554310001488999864310100111-22222466466788655422----578766352---023333345677
Q gi|254780974|r 155 LKLAMAYAEFSRSRKRLLTAREEIAVCAISG-SVGTFSNIHPYVEQHVADAM----GLKTDPISS---QVIARDRHAMYF 226 (435)
Q Consensus 155 ~~~~~~~~~l~r~~~rl~~~~~~~~~~~lgG-AvGt~~~~~~~~~~~~a~~L----Gl~~~~~~~---~~~~rd~~~e~~ 226 (435)
|+|++|+..|.+++++++.+.+.+..+++|| ||||+.+.+|.+.+++++++ |+...+.+. ..+++|.+++..
T Consensus 198 QE~sGy~~ql~~~~~~i~~~l~~l~eLAiGGTAVGTGlNa~p~f~ekva~~i~~~TG~~F~~a~NkF~al~~hd~lv~~~ 277 (462)
T COG0114 198 QEFSGYAAQLEHALERIEASLPHLYELAIGGTAVGTGLNAHPEFGEKVAEELAELTGLPFVTAPNKFEALAAHDALVEAS 277 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHH
T ss_conf 35678999999999999999899998705772304676899347899999999975897504884788765006899986
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHH-HH
Q ss_conf 888776446889999999951---67876000256446542012321024156787752112334310023543114-31
Q gi|254780974|r 227 SVLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVAL-WH 302 (435)
Q Consensus 227 ~~l~~~~~~l~kia~Dl~~l~---~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~-~~ 302 (435)
++|..++++|.|||+|||||. ++++|||..| ..++||||||+|+||+.||.+.+.|.++.|+..++.-+.++ .|
T Consensus 278 Gal~~lA~~L~KIAnDiR~l~SGPr~GLgEi~lP--enePGSSIMPGKVNPtq~EA~tmv~~QV~Gnd~ai~~ags~GnF 355 (462)
T COG0114 278 GALRTLAVSLMKIANDIRWLGSGPRCGLGEIELP--ENEPGSSIMPGKVNPTQCEALTMVAAQVIGNDAAIAFAGSQGNF 355 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCE
T ss_conf 7899999999999888878706887775421057--78997667899989427999999999997555888875405742
Q ss_pred CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 35432101555417204578999999987423100437357999986445837899999999872999899999999999
Q gi|254780974|r 303 ERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNA 382 (435)
Q Consensus 303 erd~~~~~~~~~~l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a 382 (435)
|-......+.++++..+-.+.+++-...+.|+.|+++|.+||+++++.|..++ ++|.|+ || ||...+++
T Consensus 356 ELNv~~Pvi~~N~LqS~~LLada~~~f~~~ci~gie~n~~~i~~~l~~SlmLV------TaLnp~-IG----YdkAa~IA 424 (462)
T COG0114 356 ELNVFKPVIAYNFLQSVRLLADAMRSFADHCIVGIEPNEERIKELLERSLMLV------TALNPH-IG----YDKAAKIA 424 (462)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHH------HHCCCC-CC----HHHHHHHH
T ss_conf 20010289999999999999999999998766135138899999986170578------860540-04----38999999
Q ss_pred HHHHHCCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHCC
Q ss_conf 99998199989998507432305998999985188988501
Q gi|254780974|r 383 MKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTKH 423 (435)
Q Consensus 383 ~~a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g~ 423 (435)
+.+..+|++++|.+.+ .++++++|+++++||+.+++.
T Consensus 425 K~A~keg~tlreaa~~----~G~lte~efd~~v~Pe~mv~~ 461 (462)
T COG0114 425 KKAHKEGTTLREAALE----LGLLSEEEFDKLVDPEKMVGP 461 (462)
T ss_pred HHHHHCCCCHHHHHHH----CCCCCHHHHHHHCCHHHHCCC
T ss_conf 9998779829999988----388899999986399882689
No 38
>KOG1316 consensus
Probab=100.00 E-value=0 Score=480.49 Aligned_cols=405 Identities=20% Similarity=0.181 Sum_probs=360.6
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH-HHHHHHHHHCCHHHC
Q ss_conf 8727958899999999999999977768999899999998300127898999988746378547-999999986793432
Q gi|254780974|r 11 TTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVI-AFLTHLAEIIGPDAR 89 (435)
Q Consensus 11 ~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~-a~~~~l~~~~g~~~~ 89 (435)
.+|-.|...+..-+.=-+|+|+++.+.|+|++.....|.+.++....+++.-+..-..+..||+ +.+..|.+.+|+-++
T Consensus 26 ~Si~ydk~ly~~Dv~gSkaya~~L~~~glit~~e~dkil~gLe~i~~ew~~~kf~~~p~dEDvHtanErrL~eliG~~ag 105 (464)
T KOG1316 26 ASIPYDKRLYEADVDGSKAYAKALEKAGLITEAELDKILKGLEKIRREWAAGKFKLNPNDEDVHTANERRLTELIGEIAG 105 (464)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 34753068887640544999999987588768889999977999999986494686788134566789999998755643
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25567770778778999998511024678888889999873332010021012321025542223334455431000148
Q gi|254780974|r 90 FIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRK 169 (435)
Q Consensus 90 ~iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~ 169 (435)
.+|.||||||++.|-++|++|++++.+.-.+..|++++.++|+.+.+++||||||+|.|||+.|.|++..++..|.||+.
T Consensus 106 KlHTgRSRNDQV~TDlRLw~r~~i~~~~~~l~~L~~~~v~rAe~~~dvlmpGYTHLQRAQpvrwsH~LlSha~~l~~D~~ 185 (464)
T KOG1316 106 KLHTGRSRNDQVVTDLRLWLRDAIDTILGLLWNLIRVLVDRAEAELDVLMPGYTHLQRAQPVRWSHWLLSHAEQLTRDLG 185 (464)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 11357655533678999999999999999999999999999862447222571666541673028999998999876788
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899986431010011122222466466788655422578766352--023333345677888776446889999999951
Q gi|254780974|r 170 RLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISS--QVIARDRHAMYFSVLGVIASSIERVATEIRHLQ 247 (435)
Q Consensus 170 rl~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~--~~~~rd~~~e~~~~l~~~~~~l~kia~Dl~~l~ 247 (435)
|+.+++.|+++.|+| |....++..+.+|+.+++.|||..+..++ .+..||+++|+..|.++++.+++|+|+|+.+|+
T Consensus 186 Rl~q~~~R~n~~PLG-agALAGnpl~iDR~~la~~LgF~~v~~NSm~AvsDRDFVvef~fw~sm~m~HlSRlaEdlIiy~ 264 (464)
T KOG1316 186 RLVQIRKRLNQLPLG-AGALAGNPLGIDREFLAEELGFEGVIMNSMDAVSDRDFVVEFLFWASMVMTHLSRLAEDLIIYS 264 (464)
T ss_pred HHHHHHHHHCCCCCC-CCHHCCCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_conf 999999874248753-2110389877368999975587530010011014402679999998899999998765760313
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHH---HHHHHCCCCCCCHHHHHCCCCHHHHHH
Q ss_conf 67876000256446542012321024156787752112334310023543---114313543210155541720457899
Q gi|254780974|r 248 RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMEN---VALWHERDISHSSVERVIGPDATIHLD 324 (435)
Q Consensus 248 ~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~---~~~~~erd~~~~~~~~~~l~~~~~~~~ 324 (435)
+.|||.|... +...+|||+||||+||..+|.+|+.+..+.|.+.+++.+ .+..|++|++.... .+-+.+..+.
T Consensus 265 t~EF~Fv~lS-DaySTGSSlMPQKKNpDslELlRgksgrV~gdl~g~lmt~KG~PstYnkDlQeDKe---p~Fds~~tv~ 340 (464)
T KOG1316 265 TKEFGFVTLS-DAYSTGSSLMPQKKNPDSLELLRGKSGRVFGDLTGLLMTLKGLPSTYNKDLQEDKE---PLFDSSKTVS 340 (464)
T ss_pred CCCCCCEEEC-CCCCCCCCCCCCCCCCCHHHHHCCCCCEEHHHHHHHHHHHCCCCCCCCCCHHHHHH---HHHHHHHHHH
T ss_conf 0114714301-23456754477778997788863556543366687898726785201320342003---7776688999
Q ss_pred HHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHC
Q ss_conf 99999874231004373579999864458378999999998729998999999999999999819998999850743230
Q gi|254780974|r 325 FALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRK 404 (435)
Q Consensus 325 ~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~l~~d~~i~~ 404 (435)
+++...+.++.++.||+++|.+.|.. -+.|++++.+||++|+|||++|+++++++..|.+.|.++-++-+++.....
T Consensus 341 ~~l~v~tgv~stltvn~e~m~~aLt~---dmlATdlA~YLVrKGvPFRqtHhisG~~V~~ae~rg~~l~~Lsledlqkls 417 (464)
T KOG1316 341 DSLQVATGVISTLTVNQENMEKALTP---DMLATDLAYYLVRKGVPFRQTHHISGKAVRMAEERGVTLDKLSLEDLQKLS 417 (464)
T ss_pred HHHHHHHHHHHHEEECHHHHHHCCCC---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCC
T ss_conf 99999987754536778888640580---155768999999758982155566688999999808870117799875127
Q ss_pred CCCHHHHHHHCCHHHHHCC
Q ss_conf 5998999985188988501
Q gi|254780974|r 405 VLSEKEICDKFDYKYHTKH 423 (435)
Q Consensus 405 ~l~~~eL~~~ldP~~~~g~ 423 (435)
++-++++-..+|.++-+-.
T Consensus 418 plF~eDv~~v~~ye~sVek 436 (464)
T KOG1316 418 PLFEEDVFCVFNYENSVEK 436 (464)
T ss_pred CCCCCCHHHHHCHHHHHHH
T ss_conf 2000116776053656888
No 39
>TIGR00839 aspA aspartate ammonia-lyase; InterPro: IPR004708 A number of enzymes, belonging to the lyase class, for which fumarate is a substrate have been shown , to share a short conserved sequence around a methionine which is probably involved in the catalytic activity of this type of enzymes. Aspartate ammonia-lyase catalyses the conversion of aspartate to fumarate.; GO: 0008797 aspartate ammonia-lyase activity, 0006531 aspartate metabolic process.
Probab=100.00 E-value=0 Score=478.06 Aligned_cols=388 Identities=22% Similarity=0.261 Sum_probs=338.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHCCCHHHHHHHHH----
Q ss_conf 795889999999999999997776899989999999830012--------78989999887463785479999999----
Q gi|254780974|r 14 WSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNA--------VFNVDRIMELDSIIKHDVIAFLTHLA---- 81 (435)
Q Consensus 14 fs~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~--------~~d~~~~~~~~~~~~~~v~a~~~~l~---- 81 (435)
-+-...++.|..|++|.|.|+.++|.||++-+.+|..+|++. +|.+|.++-+.+++-| |+-.++++
T Consensus 37 ~~~pefi~~~~~VKKAaaLAN~~l~~i~~~~~~AIv~AcDe~l~~GK~~DQFivD~~QGGAGTS~N--MN~NEViaN~AL 114 (469)
T TIGR00839 37 SDVPEFIRGLAMVKKAAALANVELGLIPEKIAQAIVAACDEILETGKCHDQFIVDVIQGGAGTSVN--MNTNEVIANLAL 114 (469)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHH
T ss_conf 360789999999999998755887430889999999999999856871002224433388765422--306789999888
Q ss_pred HHCCHH-HCCCC--------CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 867934-32255--------677707787789999985110246788888899998733320100210123210255422
Q gi|254780974|r 82 EIIGPD-ARFIH--------QGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTT 152 (435)
Q Consensus 82 ~~~g~~-~~~iH--------~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T 152 (435)
|..|+- |.|.| ..+|+||.+||++++.+...|..|.+.+..|.++...||.+|.+++++||||+|||+|+|
T Consensus 115 E~mGH~KGeY~~~~PndHVN~sQStNDayPta~~Ia~y~~L~kL~~~~~~l~~~F~~KA~EF~~viKMGRTqLQDAVPmt 194 (469)
T TIGR00839 115 EIMGHKKGEYQFLNPNDHVNRSQSTNDAYPTALRIAVYKSLEKLVDTMEDLRDAFKQKAKEFASVIKMGRTQLQDAVPMT 194 (469)
T ss_pred HHHCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 76255146621208865102246666644017899999999999999999999998888998888621675454532355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHH----HHHHHHHCCCCCCCCCC---CHHHHHHHHH
Q ss_conf 233344554310001488999864310100111-222224664667----88655422578766352---0233333456
Q gi|254780974|r 153 FGLKLAMAYAEFSRSRKRLLTAREEIAVCAISG-SVGTFSNIHPYV----EQHVADAMGLKTDPISS---QVIARDRHAM 224 (435)
Q Consensus 153 ~G~~~~~~~~~l~r~~~rl~~~~~~~~~~~lgG-AvGt~~~~~~~~----~~~~a~~LGl~~~~~~~---~~~~rd~~~e 224 (435)
+||+|-+|+--|.|+.+++.+.+..+..+.||+ |+|||.+.+|.+ .+.+++-.||+..+... .+.+-+.+++
T Consensus 195 lGQEF~ay~~~l~~di~~~~~~~~~l~EvNlGaTAiGTGlN~~~~Y~~lvvK~laevtG~p~V~A~~LieAT~~tgAYv~ 274 (469)
T TIGR00839 195 LGQEFEAYALLLERDIKNIKRTRQLLLEVNLGATAIGTGLNTPPEYIKLVVKKLAEVTGLPLVPAENLIEATQDTGAYVE 274 (469)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEE
T ss_conf 56048999999999999999998778776347510215778771138999887641168864252357775338996266
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 77888776446889999999951---678760002564465420123210241567877521123343100235431143
Q gi|254780974|r 225 YFSVLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALW 301 (435)
Q Consensus 225 ~~~~l~~~~~~l~kia~Dl~~l~---~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~ 301 (435)
+.++|+.++..|+|+|+|||+|| |.|+.||.+| .-|+||||||.|+|||.+|.|.+.|..+.|...++--+. +
T Consensus 275 V~g~LKr~avklSKvcNDLRLlsSGPRAGL~EInLP--~~QpGSSIMPgKVNPV~pEvvNQvcF~VIGND~tv~lA~--E 350 (469)
T TIGR00839 275 VSGALKRIAVKLSKVCNDLRLLSSGPRAGLNEINLP--ELQPGSSIMPGKVNPVVPEVVNQVCFKVIGNDTTVTLAA--E 350 (469)
T ss_pred EHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHCEEECCCHHHHHHH--C
T ss_conf 418899999986457656776405775440005764--447788437877787214325204201005625888861--1
Q ss_pred HCCCCCCCHHHHHCCCCHH----HHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 1354321015554172045----789999999874231004373579999864458378999999998729998999999
Q gi|254780974|r 302 HERDISHSSVERVIGPDAT----IHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQL 377 (435)
Q Consensus 302 ~erd~~~~~~~~~~l~~~~----~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~ 377 (435)
-+.++.+.+|+++...+| ++..++-...++|++|+++|+++|...+.+|-|.+ ++|.|+ +| ||.
T Consensus 351 -aGQLqLNVmEPVi~~~lf~S~~Il~na~~~l~~kC~~GItaN~~~c~~YV~nSiGiv------T~lNPh-iG----y~~ 418 (469)
T TIGR00839 351 -AGQLQLNVMEPVIGQALFESISILTNAIENLTDKCVEGITANEKICEDYVFNSIGIV------TALNPH-IG----YEN 418 (469)
T ss_pred -CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHCCCCE------ECCCCC-CC----CCH
T ss_conf -351012000068999999999999899998886420310676898740100111020------101420-14----223
Q ss_pred HHHHHHHHHHCCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHCC
Q ss_conf 9999999998199989998507432305998999985188988501
Q gi|254780974|r 378 VQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTKH 423 (435)
Q Consensus 378 v~~~a~~a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g~ 423 (435)
-..+++.|..+|++.+|++++ .+.|+++|||++|+|++.+..
T Consensus 419 ~~~iak~a~~tg~svrd~~Le----~~~LTee~LDdIl~~~nl~~P 460 (469)
T TIGR00839 419 GALIAKEAAKTGKSVRDVVLE----KGLLTEEELDDILSPENLLKP 460 (469)
T ss_pred HHHHHHHHHHCCCCHHHHHHC----CCCCCHHHHHCCCCHHHHCCH
T ss_conf 779999997438833023222----455675541010382651271
No 40
>pfam00206 Lyase_1 Lyase.
Probab=100.00 E-value=0 Score=477.55 Aligned_cols=286 Identities=23% Similarity=0.304 Sum_probs=252.0
Q ss_pred CCC--CHHHHHHCCHHHHHHHHHHHH-----HHHHHHHHHCCCCCHHHHHHHHHHHHHCCC--C---HHHHHHHHHHHCC
Q ss_conf 749--878887279588999999999-----999999777689998999999983001278--9---8999988746378
Q gi|254780974|r 4 RYS--RTTMTTLWSLETKFRIWFEIE-----AHACDALAKLGVIPEKSSKNIWEKGRNAVF--N---VDRIMELDSIIKH 71 (435)
Q Consensus 4 ry~--~~e~~~ifs~~~~~~~~l~ve-----~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~--d---~~~~~~~~~~~~~ 71 (435)
||. .+++..+||+.+.++..+.+| .++++++++.|+||++.+++|.++|+.... + .-.++.....++|
T Consensus 2 r~~~~~~~l~~~ft~~~~~~~rl~~~dI~~~~a~~~~la~~~~i~~~~~~~I~~al~~i~~~~~~~~~f~i~~~~e~~~~ 81 (312)
T pfam00206 2 RFTVPADALMGIFTDRSRFNFRLSEEDIKGLAALKKAAAKANVLLKEEAAAIIKALDEVAEEGKADDAFVLKVIQEGSGT 81 (312)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 85884799999983898808812075899999999999985999989999999999999842223897033621476788
Q ss_pred CHHH-HHHHHHHHCCH---HHCCCCCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 5479-99999986793---4322556777077877899999851102-46788888899998733320100210123210
Q gi|254780974|r 72 DVIA-FLTHLAEIIGP---DARFIHQGMTSSDILDTCFSIQLMRSTD-ILLEDIDQLLESLKKRAFEYKDTLTIGRSHGI 146 (435)
Q Consensus 72 ~v~a-~~~~l~~~~g~---~~~~iH~G~Ts~Di~~Ta~~l~~r~~l~-~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q 146 (435)
+|-. +++.+.+++|+ .++|||+|+||||+++|+++|++|+++. .+.+.|..++++|..+|++|++++||||||+|
T Consensus 82 ~i~~~l~e~i~~~~~~~~~~~~~vH~g~SsnD~~~Ta~~L~~~~~l~~~l~~~l~~l~~~L~~~A~~~~~~~m~GrTHlQ 161 (312)
T pfam00206 82 AVNMNLNEVIGELLGQLVHPNDKVHTGQSSNDQVPTALRLALKLALSEVLLPALGQLIDALKEKAKEFADVVKPGRTHLQ 161 (312)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999976234777885344438877122188899999999999999999999999999999985676113654662
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--HH----HHHHHHHHCCCCCCCCC--CCHHH
Q ss_conf 255422233344554310001488999864310100111222224664--66----78865542257876635--20233
Q gi|254780974|r 147 HAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIH--PY----VEQHVADAMGLKTDPIS--SQVIA 218 (435)
Q Consensus 147 ~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~--~~----~~~~~a~~LGl~~~~~~--~~~~~ 218 (435)
|||||||||+|++|+++|.|+++||.+++++++.+|+|||+|++.+.+ +. +.++++..+||..+..+ +|+.+
T Consensus 162 ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lggaa~~gt~~~~d~~~~~~~~~~l~~~~g~~~~~~n~~~~~~~ 241 (312)
T pfam00206 162 DATPVTLGQELSGYAVALTRDLERLKQLLPRILVEPLGGGTAVGTGLNADPEFAELLAKELGFFTGLPVPAPNSFEATSD 241 (312)
T ss_pred EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHC
T ss_conf 13201199999999999999999999999999798762899867766788207999999999984899888788888724
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 33345677888776446889999999951678760002564465420123210241567877521123343
Q gi|254780974|r 219 RDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRS 289 (435)
Q Consensus 219 rd~~~e~~~~l~~~~~~l~kia~Dl~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g 289 (435)
||+++++++++++++.+|+|||+|+++|+++|+|++.+|++.+++|||||||||||+.||.+++.|.++.|
T Consensus 242 rD~~~e~~~~l~~~~~~L~kia~Di~l~~s~e~g~~~~~~~~~~~GSSiMP~K~NP~~~E~~~g~~~~v~G 312 (312)
T pfam00206 242 RDAVVEFSGALALLATHLSKFANDLRLLSSGPFGFVELSLAEGEPGSSIMPGKVNPDQLELLRGKAGRVFG 312 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHCCHHCCCC
T ss_conf 45999999999999999999999999980888795772389999866788998596598998481441229
No 41
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=450.45 Aligned_cols=385 Identities=22% Similarity=0.300 Sum_probs=325.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHCCCHHHHHHHHH----HHCC
Q ss_conf 889999999999999997776899989999999830012-------78989999887463785479999999----8679
Q gi|254780974|r 17 ETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNA-------VFNVDRIMELDSIIKHDVIAFLTHLA----EIIG 85 (435)
Q Consensus 17 ~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~-------~~d~~~~~~~~~~~~~~v~a~~~~l~----~~~g 85 (435)
...++++..|++|.|.++.|+|.+|++.+++|.++|++. +|.++.++.+.+++-| |+..++++ |.+|
T Consensus 44 p~~i~a~~~VKKAaAlaN~elg~l~~~~~~aIv~ACDeil~Gk~~dqFvvD~~QGGAGTS~N--MN~NEVIAN~AlE~lG 121 (471)
T COG1027 44 PEFIRAMAMVKKAAALANKELGALPKEIADAIVKACDEILDGKCHDQFVVDVYQGGAGTSTN--MNANEVIANRALELLG 121 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCC--CCHHHHHHHHHHHHHC
T ss_conf 89999999999999986555177877899999999999975855110430011168775525--6389999999999856
Q ss_pred HH-HCC--CC------CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34-322--55------6777077877899999851102467888888999987333201002101232102554222333
Q gi|254780974|r 86 PD-ARF--IH------QGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLK 156 (435)
Q Consensus 86 ~~-~~~--iH------~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~ 156 (435)
.. |.| +| .++|+||++||++++.+...+..+.+.+..|++++..++.+|++++++||||+|+|+|+|+|++
T Consensus 122 ~~KGeY~~~hPndhVNmsQSTND~yPTa~ria~~~~l~~L~~al~~L~~af~~Ka~EF~~ilKmGRTqLQDAvPmtlGqE 201 (471)
T COG1027 122 HEKGEYQYLHPNDHVNMSQSTNDAYPTAFRIAVYKSLRKLIDALEDLIEAFERKAKEFADILKMGRTQLQDAVPMTLGQE 201 (471)
T ss_pred CCCCCEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHH
T ss_conf 77775035687553430003564330589999999999999999999999999999986555227454134466013146
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHH----HHHHHCCCCCCCCCC---CHHHHHHHHHHHHH
Q ss_conf 44554310001488999864310100111-22222466466788----655422578766352---02333334567788
Q gi|254780974|r 157 LAMAYAEFSRSRKRLLTAREEIAVCAISG-SVGTFSNIHPYVEQ----HVADAMGLKTDPISS---QVIARDRHAMYFSV 228 (435)
Q Consensus 157 ~~~~~~~l~r~~~rl~~~~~~~~~~~lgG-AvGt~~~~~~~~~~----~~a~~LGl~~~~~~~---~~~~rd~~~e~~~~ 228 (435)
|.+|+..|.++.+|+.++.+++..+.+|| |+||+.+.+|.+.+ .+++..||...+... .+-+.+.++++.++
T Consensus 202 F~Afa~~l~ed~~ri~~~~~~l~evNlGgTAiGTGiNa~~~Y~~~vv~~l~evtg~~~~~A~~Lieatq~~~afv~vsg~ 281 (471)
T COG1027 202 FGAFAVALKEDIKRIYRAAELLLEVNLGGTAIGTGINAPKGYIELVVKKLAEVTGLPLVPAENLIEATQDTGAFVMVSGA 281 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 79999999999999999998888505785011467689843799999999997588875512589887065379999999
Q ss_pred HHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 8776446889999999951---6787600025644654201232102415678775211233431002354311431354
Q gi|254780974|r 229 LGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERD 305 (435)
Q Consensus 229 l~~~~~~l~kia~Dl~~l~---~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd 305 (435)
|..++..|+|||+|+|+|+ +++++|+.+| +.|+||||||+|+|||.+|.+.+.|..+.|+..++-.+.. -+.
T Consensus 282 lk~~Av~LsKI~NDlRLLsSGPr~Gl~EI~LP--~~Q~GSSIMPgKVNPVipEvvnQvcf~ViGnD~tit~Aae---aGQ 356 (471)
T COG1027 282 LKRLAVKLSKICNDLRLLSSGPRAGLNEINLP--AVQAGSSIMPGKVNPVIPEVVNQVCFKVIGNDTTITMAAE---AGQ 356 (471)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH---HCC
T ss_conf 99999999998625655326975675632477--7789987788876841599999999999651478899887---143
Q ss_pred CCCCHHHHHCCCCHH----HHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 321015554172045----7899999998742310043735799998644583789999999987299989999999999
Q gi|254780974|r 306 ISHSSVERVIGPDAT----IHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRN 381 (435)
Q Consensus 306 ~~~~~~~~~~l~~~~----~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~ 381 (435)
++.+.+++++...+| ++..++-....+|++|+++|+++|+++++.|-|.+ ++|.|+ +| |+...++
T Consensus 357 LqLNvmePvI~~~l~~Si~iL~na~~~l~ekcI~gItaN~e~C~~~v~nSigiv------TaLnp~-iG----y~~~~~i 425 (471)
T COG1027 357 LQLNVMEPVIAYALFESISILTNACRNLREKCIDGITANEERCEEYVENSIGIV------TALNPY-IG----YENAAII 425 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH------HHHCCC-CC----CHHHHHH
T ss_conf 446501089999999999999999999999986413037999999998446788------761310-15----1178899
Q ss_pred HHHHHHCCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHCC
Q ss_conf 999998199989998507432305998999985188988501
Q gi|254780974|r 382 AMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTKH 423 (435)
Q Consensus 382 a~~a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g~ 423 (435)
++.|.++|++.+|++++ .+.|+++||+++|+|++.+..
T Consensus 426 aK~a~~tgksv~evvLe----~g~Lteeel~~Il~~~~m~~p 463 (471)
T COG1027 426 AKEALETGKSVREVVLE----RGLLTEEELDDILSPENMTKP 463 (471)
T ss_pred HHHHHHCCCCHHHHHHH----HCCCCHHHHHHHHCHHHCCCC
T ss_conf 99999748859999987----279889999987095631786
No 42
>KOG1317 consensus
Probab=100.00 E-value=0 Score=390.31 Aligned_cols=388 Identities=22% Similarity=0.251 Sum_probs=318.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-------CCCHHHHHHHHH----HHCCCHHHHHHHHHHHC
Q ss_conf 5889999999999999997776899989999999830012-------789899998874----63785479999999867
Q gi|254780974|r 16 LETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNA-------VFNVDRIMELDS----IIKHDVIAFLTHLAEII 84 (435)
Q Consensus 16 ~~~~~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~-------~~d~~~~~~~~~----~~~~~v~a~~~~l~~~~ 84 (435)
+...+++|...++|.|+.+.+.|+-| .-+.+|.+++++. +|++..++.+.+ ...++|+. +...+.+
T Consensus 67 P~pii~AfGiLKkaaA~vN~~~GLDp-kis~Ai~~AadeV~~GKL~dhFPLvvwQTGSGTQsNMN~NEVIs--NrAieil 143 (487)
T KOG1317 67 PEPIIQAFGILKKAAAEVNQEYGLDP-KISKAISQAADEVASGKLNDHFPLVVWQTGSGTQSNMNANEVIS--NRAIEIL 143 (487)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHH--HHHHHHH
T ss_conf 66899998899999998757618885-88999999888885476335675468863787424672777776--7789986
Q ss_pred CHH-H-CCCC------CCCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 934-3-2255------67770778778999998511-0246788888899998733320100210123210255422233
Q gi|254780974|r 85 GPD-A-RFIH------QGMTSSDILDTCFSIQLMRS-TDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGL 155 (435)
Q Consensus 85 g~~-~-~~iH------~G~Ts~Di~~Ta~~l~~r~~-l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~ 155 (435)
|.. | +.+| ..+||||.+||++++..-.. ...|++.+..|.++|..++.+|+|++++||||.|+|+|.|+|+
T Consensus 144 Gg~~GsK~VHPNdHvN~SQSSNDTFPtamHIa~~~ei~~~L~P~l~~L~~aL~aKs~EfkdIiKIGRTHtqDAvPLTLGQ 223 (487)
T KOG1317 144 GGKLGSKKVHPNDHVNKSQSSNDTFPTAMHIAAATEINSRLIPALTNLRDALEAKSKEFKDIIKIGRTHTQDAVPLTLGQ 223 (487)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 45446663587542341114677640478999999888777588898999988536888999985221245555540100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCH----HHHHHHHHHCCCCCCCCCC---CHHHHHHHHHHHH
Q ss_conf 344554310001488999864310100111-2222246646----6788655422578766352---0233333456778
Q gi|254780974|r 156 KLAMAYAEFSRSRKRLLTAREEIAVCAISG-SVGTFSNIHP----YVEQHVADAMGLKTDPISS---QVIARDRHAMYFS 227 (435)
Q Consensus 156 ~~~~~~~~l~r~~~rl~~~~~~~~~~~lgG-AvGt~~~~~~----~~~~~~a~~LGl~~~~~~~---~~~~rd~~~e~~~ 227 (435)
+|++|...+...++|+....+|+.....|| ||||+.+..+ ++.++++++.||+....+. ..+.+|..+|+.+
T Consensus 224 EFsgY~qQ~~ngl~Rv~~~lpr~y~LA~GGTAVGTGLNTr~GFaeKia~~va~ltgLpFvtApNkFEALAahDA~VE~~G 303 (487)
T KOG1317 224 EFSGYVQQVTNGLQRVAATLPRLYQLAQGGTAVGTGLNTRKGFAEKIAARVAELTGLPFVTAPNKFEALAAHDAMVEVSG 303 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHCC
T ss_conf 22469999998999998641589999637851025655664578999999998738974106618887765456787413
Q ss_pred HHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HC
Q ss_conf 88776446889999999951---678760002564465420123210241567877521123343100235431143-13
Q gi|254780974|r 228 VLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALW-HE 303 (435)
Q Consensus 228 ~l~~~~~~l~kia~Dl~~l~---~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~-~e 303 (435)
+|..++++|.||++|+|++. |+++||+.+| ...+||||||+|+||..||.+.+.|.+++|....+.-..++. ||
T Consensus 304 alNt~A~SlmKianDIRfLGSGPRcGlgEL~LP--ENEPGSSIMPGKVNPTQcEamTmvcaQVMGN~vAvtvgGsnGhFE 381 (487)
T KOG1317 304 ALNTIAVSLMKIANDIRFLGSGPRCGLGELMLP--ENEPGSSIMPGKVNPTQCEAMTMVCAQVMGNHVAVTVGGSNGHFE 381 (487)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEEE
T ss_conf 077899999998521121057887776531367--899986668888791788999999999845735899636676267
Q ss_pred CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 54321015554172045789999999874231004373579999864458378999999998729998999999999999
Q gi|254780974|r 304 RDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAM 383 (435)
Q Consensus 304 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~ 383 (435)
.......+....+..+-.+.+++.....+|++|++.|++|+.+-+..|..++ .+|.|| +| |+....+++
T Consensus 382 LNVFKP~i~~nvL~SirLl~D~~~sF~~nCV~Gi~aN~eri~kl~~eSLMLV------TaLNPh-IG----YD~aa~iAK 450 (487)
T KOG1317 382 LNVFKPLIASNVLHSIRLLADASVSFTKNCVVGIEANKERIAKLLNESLMLV------TALNPH-IG----YDNAAKIAK 450 (487)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH------HCCCCC-CC----CCHHHHHHH
T ss_conf 7330489999999888876401312214245223278788999987767654------304865-47----406889999
Q ss_pred HHHHCCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHCC
Q ss_conf 9998199989998507432305998999985188988501
Q gi|254780974|r 384 KVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTKH 423 (435)
Q Consensus 384 ~a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g~ 423 (435)
.+..+|.+|.+...+ .+.++++++++++.|+.++|.
T Consensus 451 ~AHKng~TLk~~Al~----lGvltee~F~ewV~Pe~MlGP 486 (487)
T KOG1317 451 TAHKNGTTLKEEALK----LGVLTEEQFDEWVVPEKMLGP 486 (487)
T ss_pred HHHHCCCCHHHHHHH----HCCCCHHHHHHHHCHHHCCCC
T ss_conf 765268768998988----554759988765087740499
No 43
>cd01594 Lyase_I_like Lyase class I_like. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respectively.
Probab=100.00 E-value=2.8e-45 Score=301.60 Aligned_cols=224 Identities=32% Similarity=0.358 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCHH-HCCC-----CC
Q ss_conf 99999999999999777689998999999983001278989999887463785479999999867934-3225-----56
Q gi|254780974|r 20 FRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHLAEIIGPD-ARFI-----HQ 93 (435)
Q Consensus 20 ~~~~l~ve~A~a~a~~e~G~ip~~aa~~I~~~~~~~~~d~~~~~~~~~~~~~~v~a~~~~l~~~~g~~-~~~i-----H~ 93 (435)
+++|+.|+.+++.++ ++.++.+.+|+. +++. |+
T Consensus 1 vra~~~v~~a~~~~~-----------------------------------------i~~~L~~~~~~~~~~~~~~~~~~~ 39 (231)
T cd01594 1 VRADLLVELAAALAL-----------------------------------------VEEVLAGRAGELAGGLHGSALVHK 39 (231)
T ss_pred CCHHHHHHHHHHHHH-----------------------------------------HHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 924789879999999-----------------------------------------999999999998678898777788
Q ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77707787789999985110246788888899998733320100210123210255422233344554310001488999
Q gi|254780974|r 94 GMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLT 173 (435)
Q Consensus 94 G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~ 173 (435)
|+||||+.+|++++++|+++..+.+.+..+..++..++++|++++||||||+|+|+|+||||++..|.+.+.++++||.+
T Consensus 40 ~~s~~d~~~t~~~~~~~~~l~~~~~~l~~~~~~l~~~ae~~~~~~~~~~th~q~A~p~t~g~~l~~~~~~l~~~~~~l~~ 119 (231)
T cd01594 40 GRSSNDIGTTALRLALRDALDDLLPLLKALIDALALKAEAHKGTVMPGRTHLQDAQPVTLGYELRAWAQVLGRDLERLEE 119 (231)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98811399999999999999999999999999999999981798633644676773120999999999999999999998
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 86431010011122222466466788655422578766352023333345677888776446889999999951678760
Q gi|254780974|r 174 AREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVATEIRHLQRTEILE 253 (435)
Q Consensus 174 ~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~~l~~~~~~l~kia~Dl~~l~~~eige 253 (435)
+ ++++++..++.++.+|+|+++|+++|++.|+++
T Consensus 120 ~----------------------------------------------~~a~~~~~l~~~~~~l~~ia~d~~~~~~~~~~~ 153 (231)
T cd01594 120 A----------------------------------------------AVAEALDALALAAAHLSKIAEDLRLLLSGEFGE 153 (231)
T ss_pred H----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 5----------------------------------------------899999999999998999999999985767554
Q ss_pred CCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 00256446542012321024156787752112334310023543114313543210155541720457899999998
Q gi|254780974|r 254 VEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVIGPDATIHLDFALNRL 330 (435)
Q Consensus 254 i~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~ 330 (435)
+.+|+...++|||+||||+||+.+|.+++++..+.|....+......+++++..++...+..+++.+..+..++..+
T Consensus 154 ~~~~~~~~~~gSS~mp~K~Np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~ 230 (231)
T cd01594 154 LGEPFLPGQPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVLTALKGGPERDNEDSPSMREILADSLLLLIDALRLL 230 (231)
T ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 31355667886667898879669999999999998239999999845714776558978998998999999999975
No 44
>pfam10397 ADSL_C Adenylosuccinate lyase C-terminus. This is the C-terminal seven alpha helices of the structure whose full length represents the enzyme adenylosuccinate lyase. This sequence lies C-terminal to the conserved motif necessary for beta-elimination reactions, Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide, the eighth step of the de novo pathway, and the formation of adenosine monophosphate (AMP) from adenylosuccinate, the second step in the conversion of inosine monophosphate into AMP.
Probab=99.74 E-value=1.1e-17 Score=129.49 Aligned_cols=81 Identities=49% Similarity=0.775 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHCCHHHHHHHH
Q ss_conf 58378999999998729998999999999999999819998999850743230599899998518898850199999998
Q gi|254780974|r 352 KGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTKHVNAIFERV 431 (435)
Q Consensus 352 ~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g~a~~i~d~v 431 (435)
+|+++||++|++|+++|+||++||++|+++++++.++|.+|.|++.+|+.+.+++++++|+++|||++|+|+++.|+|||
T Consensus 1 ~Gli~Se~vml~L~~~glgR~~Ah~lVq~~a~~a~~~~~~l~e~l~~d~~i~~~l~~~el~~l~dp~~ylg~~~~i~~rv 80 (81)
T pfam10397 1 GGLIFSERVLLALAEKGLGREEAYELVQRAAMKAWEEGRDLREVLLADPEVAAYLSEEELDALFDPAYYLGHADEIVDRV 80 (81)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 95388999999998808988999999999999998839869999870989997746999998739999997289999875
Q ss_pred H
Q ss_conf 8
Q gi|254780974|r 432 F 432 (435)
Q Consensus 432 l 432 (435)
+
T Consensus 81 l 81 (81)
T pfam10397 81 L 81 (81)
T ss_pred C
T ss_conf 9
No 45
>pfam08328 ASL_C Adenylosuccinate lyase C-terminal. This domain is found at the C-terminus of adenylosuccinate lyase(ASL; PurB in E. coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain pfam00206. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate.
Probab=98.34 E-value=1.3e-06 Score=60.56 Aligned_cols=111 Identities=15% Similarity=0.142 Sum_probs=81.0
Q ss_pred HCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 13543210155541720457899999998742310043735799998644583789999999987299989999999999
Q gi|254780974|r 302 HERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQRN 381 (435)
Q Consensus 302 ~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i~se~i~~~L~~~Gig~~~Ah~~v~~~ 381 (435)
.+||+++|.+.|+++ -+|...--++..+..-+..+.||+++|.+.|+..+. +.+|++.+.|-++|+ .+|||.++++
T Consensus 3 lQRDLsDSTvlRNiG-vafg~s~ia~~s~~kGL~ki~~N~~~i~~dL~~~we-VLaEaiQtiLR~~g~--~~~YE~lK~l 78 (115)
T pfam08328 3 WQRDLTDSTVLRNLG-VAFGHSLIAYDSLLKGLGKLEVNEARLAADLDANWE-VLAEPIQTVMRRYGI--PNPYEKLKEL 78 (115)
T ss_pred CCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHCCC--CCHHHHHHHH
T ss_conf 454440558998500-899999999999998987501579999999997789-999999999998199--9899999998
Q ss_pred HHHHHHCCCCHHHHHHCCHHHHCCCCHHHHHHH--CCHHHHH
Q ss_conf 999998199989998507432305998999985--1889885
Q gi|254780974|r 382 AMKVWKNGAIFLDVLLADVDIRKVLSEKEICDK--FDYKYHT 421 (435)
Q Consensus 382 a~~a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~--ldP~~~~ 421 (435)
.+.-.-+...+.+.+.. -.++++.-..+ +.|.+|+
T Consensus 79 TRGk~i~~~~~~~fI~~-----L~i~~~~k~~Ll~LtP~~Yi 115 (115)
T pfam08328 79 TRGKRITKEDLREFIDG-----LDIPEEAKARLLALTPATYI 115 (115)
T ss_pred HCCCCCCHHHHHHHHHH-----CCCCHHHHHHHHHCCCCCCC
T ss_conf 66898999999999995-----79999999999828703209
No 46
>pfam10415 FumaraseC_C Fumarase C C-terminus. Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Kreb's cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit. FumaraseC_C does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle.
Probab=98.05 E-value=4.8e-06 Score=56.93 Aligned_cols=54 Identities=24% Similarity=0.314 Sum_probs=48.1
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHHCC
Q ss_conf 999987299989999999999999998199989998507432305998999985188988501
Q gi|254780974|r 361 LLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYHTKH 423 (435)
Q Consensus 361 ~~~L~~~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~l~~d~~i~~~l~~~eL~~~ldP~~~~g~ 423 (435)
.++|+|+ +| |+...+++++|.++|++++|++.+ .+.++++|++++|||++.++.
T Consensus 2 vTaL~P~-IG----Y~~aa~IAk~A~~~g~sv~e~v~e----~glls~~e~d~ll~p~~m~~P 55 (55)
T pfam10415 2 VTALNPH-IG----YDKAAKIAKEALKTGRTLREVALE----LGLLTEEELDEILDPENMTGP 55 (55)
T ss_pred CCCCCCH-HC----HHHHHHHHHHHHHHCCCHHHHHHH----CCCCCHHHHHHHCCHHHCCCC
T ss_conf 1103341-34----399999999999929989999999----399999999987799882897
No 47
>KOG2700 consensus
Probab=97.69 E-value=0.00013 Score=48.06 Aligned_cols=192 Identities=14% Similarity=0.014 Sum_probs=104.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHCC---H---HHCCCCCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHH-HHHC
Q ss_conf 8874637854799999998679---3---4322556777077877899999851102-46788888899998733-3201
Q gi|254780974|r 64 ELDSIIKHDVIAFLTHLAEIIG---P---DARFIHQGMTSSDILDTCFSIQLMRSTD-ILLEDIDQLLESLKKRA-FEYK 135 (435)
Q Consensus 64 ~~~~~~~~~v~a~~~~l~~~~g---~---~~~~iH~G~Ts~Di~~Ta~~l~~r~~l~-~l~~~l~~l~~~L~~~a-~~~~ 135 (435)
...+.++|++..++....+.|- + +-+.+|..+++-|+..-.-..-...++. .+.....++. .|.+++ +...
T Consensus 150 ~~~g~Th~q~A~l~tfgkr~~~~~qel~~~l~~f~~~~~~~~~~~~kga~gtqasf~~l~~~~~~kv~-~ld~Lv~k~~g 228 (481)
T KOG2700 150 PTLGRTHLQPAQLTTFGKRMCLWIQELLRDLERFHRARTDVRFRGLKGATGTQASFLSLFLGDMDKVE-KLDSLVTKELG 228 (481)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHC
T ss_conf 00141367540155799999998999999999999863120015665213018888886335188899-89999999818
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 00210123210255422233344554310001488999864310100111222224664667886554225787663520
Q gi|254780974|r 136 DTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISSQ 215 (435)
Q Consensus 136 ~~~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~~ 215 (435)
=.+|.-+| ||++.|.+.+..++..+.-..-..+-..+.+ ...+++++++.+.. ..-|-+..|.
T Consensus 229 f~~~~~~T-GQt~sr~~~~~~~~~la~lgat~~k~~Tdir---ll~~~~ev~epFea----------~q~gsSaMp~--- 291 (481)
T KOG2700 229 FVPMYIVT-GQTYSRKTDAEEVAPLASLGATAHKYATDIR---LLAKFAEVEEPFEA----------HQIGSSAMPY--- 291 (481)
T ss_pred CCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCC----------CCCCCCCCCC---
T ss_conf 88655445-8867831578999999988899999999999---99999875255001----------5555556887---
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHH
Q ss_conf 2333334-567788877644688999999995167876000256446542012321024156787752112
Q gi|254780974|r 216 VIARDRH-AMYFSVLGVIASSIERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSR 285 (435)
Q Consensus 216 ~~~rd~~-~e~~~~l~~~~~~l~kia~Dl~~l~~~eigei~ep~~~~~~GSS~MP~K~NP~~~E~i~~~a~ 285 (435)
.|.++ -|+++.|+. .+.-...+... ++-+. ...+..|+|+||+|.||...+...+.-.
T Consensus 292 --krNpm~~E~itslar---~l~~~v~~al~-----~~~~q--w~Ertl~dSa~~rivlP~~Fl~ad~~L~ 350 (481)
T KOG2700 292 --KRNPMRCERITSLAR---HLRPYVTQALN-----TASVQ--WHERTLDDSANRRIVLPDAFLTADGNLG 350 (481)
T ss_pred --CCCCCHHHHHHHHHH---HHHHHHHHHHH-----HHHHH--HHHCCCCCCCCCCEECHHHHHHHHHHHH
T ss_conf --778712678758999---98777777766-----67777--7650345333653346588887788999
No 48
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=57.21 E-value=12 Score=17.08 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCEECHHHHHHHHHHHCCHH
Q ss_conf 999987423100437357999986445837
Q gi|254780974|r 326 ALNRLKNVIEELVVYPENMKDNLEQLKGLI 355 (435)
Q Consensus 326 ~l~~~~~ll~~L~vn~erm~~nl~~s~g~i 355 (435)
..-.+...-..+.+||+.+.+|+.++++++
T Consensus 305 LIi~Ft~Fyt~i~~nP~eiAenl~k~G~~I 334 (417)
T CHL00161 305 LILFFSYFYSSLVLNPKDISENLKKMAVSI 334 (417)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
T ss_conf 999999999997168999999999869817
No 49
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family; InterPro: IPR004589 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0008026 ATP-dependent helicase activity, 0006310 DNA recombination.
Probab=52.94 E-value=12 Score=17.09 Aligned_cols=145 Identities=12% Similarity=0.151 Sum_probs=89.6
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHC-CHH--HHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHH----HHHHH
Q ss_conf 43225567770778778999998511-024--678888889-99987333201002101232102554222----33344
Q gi|254780974|r 87 DARFIHQGMTSSDILDTCFSIQLMRS-TDI--LLEDIDQLL-ESLKKRAFEYKDTLTIGRSHGIHAEPTTF----GLKLA 158 (435)
Q Consensus 87 ~~~~iH~G~Ts~Di~~Ta~~l~~r~~-l~~--l~~~l~~l~-~~L~~~a~~~~~~~m~grTh~Q~A~P~T~----G~~~~ 158 (435)
.|.++--..|.+.+..-..-+.-|+. +.+ +.|+-...- .-|..+...|...- ++-+ .|=+|
T Consensus 78 ~A~~L~s~~s~~~~~~v~~~~~~k~g~~kllYvtPE~~~~~~~ll~~Le~~Y~~~~-----------~~~iAvDEAHCiS 146 (497)
T TIGR00614 78 PATFLNSSQSKEQQKEVLTDLSKKDGKLKLLYVTPEKISKSKSLLQTLEKLYERKG-----------ITLIAVDEAHCIS 146 (497)
T ss_pred CEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHCCHHHHHHHHHHHHHCC-----------CEEEEEECEEEEC
T ss_conf 30104432577899999999873079758997163465346478999999886449-----------6699983215435
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55431000148899986431010011122222466466788655422578766352023333345677888776446889
Q gi|254780974|r 159 MAYAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIER 238 (435)
Q Consensus 159 ~~~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~~l~~~~~~l~k 238 (435)
.|-..+..++.+|-.++..++.+|+ ++.-++..+.+++...+.|++..+.+ ..++-|+.--+. .+..=.+.-.|
T Consensus 147 qWGHDFR~~Y~~LG~Lk~~fP~vP~---~ALTATA~~~~~~Di~~~L~l~~p~~--~~~SFdRPNl~y-~v~~K~~n~~~ 220 (497)
T TIGR00614 147 QWGHDFRPDYKALGSLKQKFPNVPI---MALTATASPSVREDILRILNLKNPQV--FITSFDRPNLYY-EVRRKTSNTKK 220 (497)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCE---EEEECCCCHHHHHHHHHHHCCCCCCE--EEECCCCCCCEE-EEECCCCCHHH
T ss_conf 8888740799996578885488743---64340578678999998722136624--640466876303-40057897025
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999516
Q gi|254780974|r 239 VATEIRHLQR 248 (435)
Q Consensus 239 ia~Dl~~l~~ 248 (435)
+..|+.-|-.
T Consensus 221 ~~~dl~~f~~ 230 (497)
T TIGR00614 221 ILEDLLRFIV 230 (497)
T ss_pred HHHHHHHHHH
T ss_conf 8999999987
No 50
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=52.21 E-value=15 Score=16.56 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 3789999999987299989999999999999
Q gi|254780974|r 354 LIHSQRILLALTQAGVSREEAYQLVQRNAMK 384 (435)
Q Consensus 354 ~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~ 384 (435)
...+++.++.|++.||||.+++++|..--++
T Consensus 371 ValAt~a~~mLaKPGMGfDeg~~iV~NEmnR 401 (410)
T COG3799 371 VALATRAMRMLAKPGMGFDEGLDIVFNEMNR 401 (410)
T ss_pred HHHHHCHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 2212047878448988710678898788899
No 51
>PRK07306 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=49.00 E-value=8.9 Score=17.95 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=41.4
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCC
Q ss_conf 7333201002101232102554222-------3334455431000148899986431-010011122222
Q gi|254780974|r 129 KRAFEYKDTLTIGRSHGIHAEPTTF-------GLKLAMAYAEFSRSRKRLLTAREEI-AVCAISGSVGTF 190 (435)
Q Consensus 129 ~~a~~~~~~~m~grTh~Q~A~P~T~-------G~~~~~~~~~l~r~~~rl~~~~~~~-~~~~lgGAvGt~ 190 (435)
.+|.+..+..|-+| .|||+||-| |+-.+-|.-.+..+++.+....+.. ...+.||-||..
T Consensus 137 ~~a~~~~~~~~~~~--~~pATPTl~NaG~~~~gqlsSCFll~v~Dsl~~I~~~~~~~a~lSK~gGGvG~~ 204 (720)
T PRK07306 137 DLAKDLADEMIHQR--YQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIN 204 (720)
T ss_pred HHHHHHHHHHHHCC--CCCCCCHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999999998485--336887111189999986442450578878789999999999886416747676
No 52
>TIGR00065 ftsZ cell division protein FtsZ; InterPro: IPR000158 In bacteria, FtsZ , , is an essential cell division protein which appears to be involved in the initiation of this event. It assembles into a cytokinetic ring on the inner surface of the cytoplasmic membrane at the place where division will occur. The ring serves as a scaffold that is disassembled when septation is completed. FtsZ ring formation is initiated at a single site on one side of the bacterium and appears to grow bidirectionally. In Escherichia coli, MinCD IPR005526 from INTERPRO, encoded by the MinB locus, form a complex which appears to block the formation of FtsZ rings at the cell poles, at the ancient mid cell division sites, whilst MinE, encoded at the same locus, specifically prevents the action of MinCD at mid cell. FtsZ is a GTP binding protein PDOC00199 from PROSITEDOC with a GTPase activity. It undergoes GTP-dependent polymerization into filaments (or tubules) that seem to form a cytoskeleton involved in septum synthesis. The structure and the properties of FtsZ clearly provide it with the capacity for the cytoskeletal, perhaps motor role, necessary for "contraction" along the division plane. In addition, however, the FtsZ ring structure provides the framework for the recruitment or assembly of the ten or so membrane and cytoplasmic proteins, uniquely required for cell division in E. coli or Bacillus subtilis, some of which are required for biogenesis of the new hemispherical poles of the two daughter cells. FtsZ can polymerize into various structures, for example a single linear polymer of FtsZ monomers, called a protofilament. Protofilaments can associate laterally to form pairs (sometimes called thick filaments, bundles (ill-defined linear associations of multiple protofilaments or thick filaments, sheets (parallel or anti-parallel two-dimensional associations of thick filaments and tubes (anti-parallel associations of thick filaments in a circular fashion to form a tubular structure). In addition, small circles of FtsZ monomers (a short protofilament bent around to join itself, apparently head to tail) have been observed and termed mini-rings. FtsZ is a protein of about 400 residues which is well conserved across bacterial species and which is also present in the chloroplast of plants as well as in archaebacteria . FtsZ shows structural similarity with eukaryotic tubulins. This similarity is probably both evolutionary and functionally significant.; GO: 0005525 GTP binding, 0005737 cytoplasm.
Probab=48.99 E-value=8.7 Score=18.03 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHCCCCCCC
Q ss_conf 68899999999516787600
Q gi|254780974|r 235 SIERVATEIRHLQRTEILEV 254 (435)
Q Consensus 235 ~l~kia~Dl~~l~~~eigei 254 (435)
..-|.|+|+.--+=.+|.|+
T Consensus 192 ~AF~~AD~vL~~aVkGI~el 211 (365)
T TIGR00065 192 DAFKVADDVLRRAVKGISEL 211 (365)
T ss_pred HHHHHHHHHHHHHCCCHHHH
T ss_conf 99999999999750264788
No 53
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=48.78 E-value=19 Score=15.95 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 333445543100014889998643101001112222246646678865542257876
Q gi|254780974|r 154 GLKLAMAYAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTD 210 (435)
Q Consensus 154 G~~~~~~~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~ 210 (435)
.|-++.|-..+.-++.+|..+++.+...|+= ..-++..|.+++.+.+.|++..+
T Consensus 148 AHcvs~WGhdFRp~Y~~l~~l~~~~~~~p~~---AlTATAt~~v~~di~~~L~l~~~ 201 (607)
T PRK11057 148 AHCISQWGHDFRPEYAALGQLRQRFPTLPFM---ALTATADDTTRQDIVRLLGLNDP 201 (607)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCCCEE---EEEECCCHHHHHHHHHHHCCCCC
T ss_conf 6667541550038899999999976999748---99963687899999997089998
No 54
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=47.15 E-value=13 Score=17.01 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHCEECHHHHHHHHHHHCCHH
Q ss_conf 999987423100437357999986445837
Q gi|254780974|r 326 ALNRLKNVIEELVVYPENMKDNLEQLKGLI 355 (435)
Q Consensus 326 ~l~~~~~ll~~L~vn~erm~~nl~~s~g~i 355 (435)
..-.+...-..+.+||+.+.+|+.++++++
T Consensus 319 LIi~FsyFyt~i~~nP~eiAenlkK~G~fI 348 (434)
T PRK12907 319 LIVAFTYFYAFIQVNPEQMAENLKKQNGYV 348 (434)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
T ss_conf 999999999998248478999999769858
No 55
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=45.65 E-value=21 Score=15.65 Aligned_cols=102 Identities=15% Similarity=0.065 Sum_probs=49.2
Q ss_pred CCCCCCCCCC-----CCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHH---HHHCCCCCCCHHHHHCCCCH---H
Q ss_conf 6000256446-----54201232102415678775211233431002354311---43135432101555417204---5
Q gi|254780974|r 252 LEVEEFFHPG-----QKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVA---LWHERDISHSSVERVIGPDA---T 320 (435)
Q Consensus 252 gei~ep~~~~-----~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~---~~~erd~~~~~~~~~~l~~~---~ 320 (435)
++.+.|-... .+-||-+|=|.||...--+. .+..+.....+...-.. ..+.-....+-..+.. +.. .
T Consensus 239 ~~r~IPI~y~~~~~~~g~~s~lPlKln~agvIPvI-fassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~-~~~~~y~ 316 (436)
T COG0201 239 ARRRIPIQYAKRQSYRGQSSYLPLKLNYAGVIPVI-FASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALS-PGSPVYI 316 (436)
T ss_pred EEEEEEHHHHHHHHCCCCCCEEEEEEECCCCHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHC-CCCHHHH
T ss_conf 07886345435441478674431575245775899-999999999999998277763211563466897606-7869999
Q ss_pred HHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHH
Q ss_conf 78999999987423100437357999986445837
Q gi|254780974|r 321 IHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLI 355 (435)
Q Consensus 321 ~~~~~~l~~~~~ll~~L~vn~erm~~nl~~s~g~i 355 (435)
...-...-.+...-..+..|++.+.+|+..+++++
T Consensus 317 ~~y~~lii~Fs~Fy~~i~~np~~~A~~lkksG~~I 351 (436)
T COG0201 317 ALYVVLIIFFSYFYTEIQFNPEEIAENLKKSGGFI 351 (436)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
T ss_conf 99999999999999998329999999999769928
No 56
>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=45.65 E-value=14 Score=16.78 Aligned_cols=79 Identities=15% Similarity=0.075 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7789999985110246788888899998733320100210123210255422-------233344554310001488999
Q gi|254780974|r 101 LDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTT-------FGLKLAMAYAEFSRSRKRLLT 173 (435)
Q Consensus 101 ~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~P~T-------~G~~~~~~~~~l~r~~~rl~~ 173 (435)
+-.-..+.++-++-+-..+... |.+.-+..+-+ ..|||.||- .|+-.|=+.-.+..+++.+..
T Consensus 111 ~E~~~~~~~~val~~~~~d~~~--------a~~~y~~m~~~--~f~paTPTl~NaG~~~~gqlsSCFll~v~Dsie~I~~ 180 (696)
T PRK07632 111 LEDYEDRVAIVALYLANGDKAK--------AKQFISAMVEQ--RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINF 180 (696)
T ss_pred CCCHHHHHHHHHHHHCCCCHHH--------HHHHHHHHHHC--CEECCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHH
T ss_conf 2489999999999971776999--------99999999849--6537886111079999897650683357888789999
Q ss_pred HHHHH-HHHCCCCCCCC
Q ss_conf 86431-01001112222
Q gi|254780974|r 174 AREEI-AVCAISGSVGT 189 (435)
Q Consensus 174 ~~~~~-~~~~lgGAvGt 189 (435)
..+.. ...+.||-||.
T Consensus 181 ~~~~~a~iSK~GGGvG~ 197 (696)
T PRK07632 181 IDSTAMQLSKIGGGVAL 197 (696)
T ss_pred HHHHHHHHHHCCCEEEE
T ss_conf 99999999853785765
No 57
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase; InterPro: IPR006395 These sequences describe methylaspartate ammonia-lyase, also called beta-methylaspartase. It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. .
Probab=43.51 E-value=23 Score=15.45 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 78999999998729998999999999999999
Q gi|254780974|r 355 IHSQRILLALTQAGVSREEAYQLVQRNAMKVW 386 (435)
Q Consensus 355 i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a~ 386 (435)
-+|+...+.|+|.|||+.++|.+|+.--++.+
T Consensus 377 ~~At~A~~vLAKPGMGvDeg~~iV~NE~nR~L 408 (414)
T TIGR01502 377 ALATDADQVLAKPGMGVDEGFAIVKNEMNRVL 408 (414)
T ss_pred HHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 54423466522899864566788675468899
No 58
>TIGR00624 tag DNA-3-methyladenine glycosylase I; InterPro: IPR004597 One common form of damage to DNA occurs when alkyl groups become covalently linked to DNA, leading to the formation of mutagenic or toxic lesions. Alkylating agents are ubiquitous in the environment and can also exist endogenously; for example S-adenosylmethionine, a commonly used methyl donor in many cellualr pathways, can produce methylation damage. Given the prevalence of alkylating agents it is not surprising that all cellular organisms studied so far have developed repair systems to deal with DNA alkylation . DNA-3-methyladenine glycosylase I (also known as TagI) is part of the broader helix-hairpin-helix DNA repair glycosylase supefamily. It specifically catalyses the release of 3-methylated adenine and, to a lesser extent, guanosine bases from DNA by hydrolysis of the deoxyribose N-glycosidic bond , . A phylogenomic study suggests that TagI evolved in, and is specific to, the bacteria .; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair.
Probab=42.93 E-value=11 Score=17.38 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 241567877521123
Q gi|254780974|r 272 RNPILTENLTGLSRL 286 (435)
Q Consensus 272 ~NP~~~E~i~~~a~~ 286 (435)
||=...+.++++|+-
T Consensus 90 RnR~Ki~A~i~NArA 104 (185)
T TIGR00624 90 RNRLKIEATIANARA 104 (185)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 001889999999999
No 59
>TIGR02036 dsdC D-serine deaminase transcriptional activator; InterPro: IPR011781 This family, part of the LysR family of transcriptional regulators, activates transcription of the gene for D-serine deaminase, dsdA. Trusted members of this family so far are found adjacent to dsdA and only in Gammaproteobacteria, including Escherichia coli, Vibrio cholerae, and Colwellia psychrerythraea..
Probab=42.54 E-value=23 Score=15.35 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=9.3
Q ss_pred HHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 9999951678760002564465
Q gi|254780974|r 241 TEIRHLQRTEILEVEEFFHPGQ 262 (435)
Q Consensus 241 ~Dl~~l~~~eigei~ep~~~~~ 262 (435)
+|=.-+++.||. |...|+..+
T Consensus 133 NeNinfqg~GID-vAIYFDd~~ 153 (302)
T TIGR02036 133 NENINFQGAGID-VAIYFDDKQ 153 (302)
T ss_pred CCCEECCCCCCE-EEEEECCCC
T ss_conf 353201357503-788707888
No 60
>pfam01257 Complex1_24kDa Respiratory-chain NADH dehydrogenase 24 Kd subunit.
Probab=40.92 E-value=25 Score=15.20 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=15.8
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9999977768999899999998300
Q gi|254780974|r 29 HACDALAKLGVIPEKSSKNIWEKGR 53 (435)
Q Consensus 29 A~a~a~~e~G~ip~~aa~~I~~~~~ 53 (435)
+|-..|.+.|-||+++-+.|.+.+.
T Consensus 18 ~L~~iQ~~~Gyip~~~~~~iA~~l~ 42 (145)
T pfam01257 18 LLHLAQEQYGYLPDEAIEYIAELLG 42 (145)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 9999999849969999999999988
No 61
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=40.03 E-value=26 Score=15.11 Aligned_cols=25 Identities=8% Similarity=0.039 Sum_probs=15.7
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9999977768999899999998300
Q gi|254780974|r 29 HACDALAKLGVIPEKSSKNIWEKGR 53 (435)
Q Consensus 29 A~a~a~~e~G~ip~~aa~~I~~~~~ 53 (435)
+|-.+|.+.|-||+++.+.|.+.+.
T Consensus 27 ~L~~iQ~~~G~i~~ea~~~iA~~l~ 51 (154)
T PRK07539 27 ALKIVQEQRGWVPDEAIEAVADYLG 51 (154)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 9999999879939999999999979
No 62
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases; InterPro: IPR011833 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins in this entry are glycosyltransferases with phosphorylase activities. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) . GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 800f its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels . There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that 'regardless of the a or b form, GPase functions as a dimer in vivo . The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain . The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments . The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible .; GO: 0004645 phosphorylase activity, 0030170 pyridoxal phosphate binding, 0005975 carbohydrate metabolic process.
Probab=37.24 E-value=28 Score=14.84 Aligned_cols=71 Identities=15% Similarity=0.306 Sum_probs=51.2
Q ss_pred HHHHHHHH---HHHH--CEECHHHHHHHHHHHCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99999874---2310--04373579999864458378999999998-72999899999999999999981999899985
Q gi|254780974|r 325 FALNRLKN---VIEE--LVVYPENMKDNLEQLKGLIHSQRILLALT-QAGVSREEAYQLVQRNAMKVWKNGAIFLDVLL 397 (435)
Q Consensus 325 ~~l~~~~~---ll~~--L~vn~erm~~nl~~s~g~i~se~i~~~L~-~~Gig~~~Ah~~v~~~a~~a~~~~~~l~e~l~ 397 (435)
.++..+.. .-.. ++=-+++..=.|+.|+|.+.--.+|--|+ ++|+++.+|.+++.+.. |.-+-.-|-|+|.
T Consensus 291 DIir~~~~~~~~~~~~~l~~f~~k~aiQLNDTHPalaIPELMRLL~De~~~~WD~AW~It~~tf--aYTNHT~LpEALE 367 (822)
T TIGR02093 291 DIIRRHKEKERTHGDKSLEDFPKKVAIQLNDTHPALAIPELMRLLIDEEGLDWDEAWDITTKTF--AYTNHTLLPEALE 367 (822)
T ss_pred HHHHHHHHHCCCCCCCCHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCC--CCCCCHHHHHHHC
T ss_conf 9999887502568887500210828887368987311466767776430588877877600001--6546101232531
No 63
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=37.20 E-value=28 Score=14.84 Aligned_cols=30 Identities=7% Similarity=0.072 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHCEECHHHHHHHHHHHCCHH
Q ss_conf 999987423100437357999986445837
Q gi|254780974|r 326 ALNRLKNVIEELVVYPENMKDNLEQLKGLI 355 (435)
Q Consensus 326 ~l~~~~~ll~~L~vn~erm~~nl~~s~g~i 355 (435)
..-.++..-..+.+||+.+.+|+.++++++
T Consensus 288 LIi~FtyFyt~i~~nP~~iAenLkK~G~fI 317 (399)
T PRK12417 288 LQMLLSYFFSFVLINTKQISKRMLKSGNYI 317 (399)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
T ss_conf 999999999995118999999999779858
No 64
>pfam00343 Phosphorylase Carbohydrate phosphorylase. The members of this family catalyse the formation of glucose 1-phosphate from one of the following polyglucoses; glycogen, starch, glucan or maltodextrin.
Probab=33.64 E-value=32 Score=14.48 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=6.4
Q ss_pred CCCHHHHHHHHHHHC
Q ss_conf 785479999999867
Q gi|254780974|r 70 KHDVIAFLTHLAEII 84 (435)
Q Consensus 70 ~~~v~a~~~~l~~~~ 84 (435)
+||.++..+.++..+
T Consensus 223 tHpa~ai~ElmRiLv 237 (712)
T pfam00343 223 THPTLAIPELMRILI 237 (712)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 875115999999998
No 65
>TIGR02317 prpB methylisocitrate lyase; InterPro: IPR012695 Propionate is the second most abundant low molecular mass carbon source found in soil, being generated by the degradation of several amino acids, fementation of crabohydrates and the oxidation of odd-chain fatty acids. Many different organisms are capable of metabolising propionate and several distinct pathways for utilising this compound exist, all of which begin with its activation to propionyl-CoA . Many bacteria metabolise propionate to pyruvate by the 2-methylcitric acid cycle. In the first step, catalysed by methycitrate synthase, oxaloacetate and propionyl-CoA are condensed to form 2-methylcitrate and CoA. The 2-methylcitrate is subsequently converted to 2-methylisocitrate by the combined actions of a dehydratase and an aconitase. In the final step, 2-methylisocitrate lyase cleaves a C-C bond within this compound to form succinate and pyruvate. The succinate is further oxidised to oxaloacetate which re-enters the cycle, while the pyruvate can be used further for either energy generation or biomass synthesis. Proteins in this entry are mostly 2-methylisocitrate lyases. Some of them have been annotated (incorrectly it seems) as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. Structural studies indicate that these enzymes belong to the isocitrate lyase family, binding a Mg(2+) cofactor and forming a TIM barrel fold , . As with other enzymes in this family, substrate-binding induces a conformational change that prevents solvent access to the active site and which is important for catalysis. .
Probab=30.24 E-value=37 Score=14.13 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889998643101001112222246646678865542257876635202333-3345677888776446889999999951
Q gi|254780974|r 169 KRLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISSQVIAR-DRHAMYFSVLGVIASSIERVATEIRHLQ 247 (435)
Q Consensus 169 ~rl~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~~~~~~~r-d~~~e~~~~l~~~~~~l~kia~Dl~~l~ 247 (435)
.++.++.+.-+.+++ +|+.+... ...|+.-||+....|....+- +-=+-=++ -++|.-++.|.|-.+
T Consensus 3 ~~fR~a~~~~~ilq~---pGa~n~~~----AL~Ae~aGF~A~YLSGaa~aa~sLGlPDLG-----~~tL~Eva~~~r~It 70 (287)
T TIGR02317 3 KRFREAIAKEDILQI---PGAINGLV----ALLAERAGFEAIYLSGAAVAAGSLGLPDLG-----ITTLTEVAERARRIT 70 (287)
T ss_pred HHHHHHHHCCCCEEE---CCHHHHHH----HHHHHHCCCCEEEEHHHHHHHHHHCCCCCC-----CCCHHHHHHHHHHHH
T ss_conf 105999856897487---14061899----999986375566101687741320677676-----678789999988777
Q ss_pred C
Q ss_conf 6
Q gi|254780974|r 248 R 248 (435)
Q Consensus 248 ~ 248 (435)
+
T Consensus 71 r 71 (287)
T TIGR02317 71 R 71 (287)
T ss_pred H
T ss_conf 5
No 66
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains . Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export . Homologs of secY are found in archaebacteria . SecY is also encoded in the chloroplast genome of some algae where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0009306 protein secretion, 0016020 membrane.
Probab=28.30 E-value=33 Score=14.44 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=21.2
Q ss_pred HHHHHHH-HHCEECHHHHHHHHHHHCCHH
Q ss_conf 9987423-100437357999986445837
Q gi|254780974|r 328 NRLKNVI-EELVVYPENMKDNLEQLKGLI 355 (435)
Q Consensus 328 ~~~~~ll-~~L~vn~erm~~nl~~s~g~i 355 (435)
-.|...= +.+.+||+.|.+||.+++.++
T Consensus 379 ~~F~~fY~~t~~~NP~~~A~Nlkk~G~~I 407 (489)
T TIGR00967 379 IFFSYFYAETLQLNPEDLAKNLKKQGMFI 407 (489)
T ss_pred HHHHHHHHHEEECCHHHHHHHHHHCCCCC
T ss_conf 99776655203448899999996538643
No 67
>KOG0351 consensus
Probab=27.39 E-value=41 Score=13.82 Aligned_cols=127 Identities=15% Similarity=0.104 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHCCH---HHCCCCCCCCCHHHHHHHHHHHHHHC---CHHHHH-HHHHHHHHHHHHHHHHC----CHHHH
Q ss_conf 547999999986793---43225567770778778999998511---024678-88888999987333201----00210
Q gi|254780974|r 72 DVIAFLTHLAEIIGP---DARFIHQGMTSSDILDTCFSIQLMRS---TDILLE-DIDQLLESLKKRAFEYK----DTLTI 140 (435)
Q Consensus 72 ~v~a~~~~l~~~~g~---~~~~iH~G~Ts~Di~~Ta~~l~~r~~---l~~l~~-~l~~l~~~L~~~a~~~~----~~~m~ 140 (435)
|..++.+--..++.. .|.++|-++|......+-..|....- +..+.+ .+......+..++.-+. --..+
T Consensus 312 PL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vI 391 (941)
T KOG0351 312 PLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVI 391 (941)
T ss_pred CHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECHHHHHCCCCHHHHHHHCCCCCEEEEEEE
T ss_conf 38999999997432148541323565668889999999857887678999677886333215667875067870488872
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 123210255422233344554310001488999864310100111222224664667886554225787663
Q gi|254780974|r 141 GRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPI 212 (435)
Q Consensus 141 grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~a~~LGl~~~~~ 212 (435)
.. .|=++.|...|.-++.+|..++.+..-.|+= +.-++.-+.+++.+.+.||+..+++
T Consensus 392 DE-----------AHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~i---ALTATAT~~v~~DIi~~L~l~~~~~ 449 (941)
T KOG0351 392 DE-----------AHCVSQWGHDFRPSYKRLGLLRIRFPGVPFI---ALTATATERVREDVIRSLGLRNPEL 449 (941)
T ss_pred CH-----------HHHHHHHCCCCCHHHHHHHHHHHHCCCCCEE---EEEHHCCHHHHHHHHHHHCCCCCCE
T ss_conf 27-----------8876642233347789999998527899768---7530020889999999827888632
No 68
>pfam00417 Ribosomal_S3_N Ribosomal protein S3, N-terminal domain. This family contains a central domain pfam00013, hence the amino and carboxyl-terminal domains are stored separately.
Probab=27.23 E-value=15 Score=16.61 Aligned_cols=10 Identities=50% Similarity=0.464 Sum_probs=8.1
Q ss_pred HHHHCCHHHH
Q ss_conf 3210241567
Q gi|254780974|r 268 MPHKRNPILT 277 (435)
Q Consensus 268 MP~K~NP~~~ 277 (435)
|-||+||...
T Consensus 1 MGQKvnP~gf 10 (62)
T pfam00417 1 MGQKVNPIGF 10 (62)
T ss_pred CCCCCCCEEE
T ss_conf 9887697503
No 69
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial; InterPro: IPR006248 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop , . Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) . Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway . The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) , . As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated . IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis . Although IRP2 is homologous to IRP1, IPR2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes . In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica , . In S.enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents mitochondrial aconitase (mAcn), as well as close homologues such as certain bacterial aconitase A (AcnA) enzymes. More information about these proteins can be found at Protein of the Month: Aconitase .; GO: 0003994 aconitate hydratase activity, 0051539 4 iron 4 sulfur cluster binding, 0006099 tricarboxylic acid cycle.
Probab=25.03 E-value=41 Score=13.81 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHCCHHHCCCCCCCCCHHHHH-HHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 5479999999867934322556777077877-899-99985110246788888899998733320100210123210255
Q gi|254780974|r 72 DVIAFLTHLAEIIGPDARFIHQGMTSSDILD-TCF-SIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAE 149 (435)
Q Consensus 72 ~v~a~~~~l~~~~g~~~~~iH~G~Ts~Di~~-Ta~-~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~grTh~Q~A~ 149 (435)
+.---++.|-.++.+ .|-..+|||+.- +.. .-+||=.=+.+.=+=..-+-+|+.+-.. -.-|.|+
T Consensus 19 pLTlaEKiLYSHLdd----p~~S~~S~d~~Gr~~RG~~yLkL~PDRVamQDA~AQMAlLQFm~~---------gL~~~~~ 85 (761)
T TIGR01340 19 PLTLAEKILYSHLDD----PEESLLSQDISGRDVRGKSYLKLRPDRVAMQDASAQMALLQFMTA---------GLPQVAV 85 (761)
T ss_pred CCHHHHHHHHHCCCC----HHHCEEECCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC---------CCCCCCC
T ss_conf 722555556420467----202303024565322145454448860001036789999999865---------8888764
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH------------------------------------------HHHC
Q ss_conf 422233344-----55431000148899986431------------------------------------------0100
Q gi|254780974|r 150 PTTFGLKLA-----MAYAEFSRSRKRLLTAREEI------------------------------------------AVCA 182 (435)
Q Consensus 150 P~T~G~~~~-----~~~~~l~r~~~rl~~~~~~~------------------------------------------~~~~ 182 (435)
|.|.-+==. +--..|.+..+-=.++++.| +-+.
T Consensus 86 Pa~iHCDHLI~~~~G~~kDL~~~~~~N~EVfDFL~s~~~kYgi~FW~PGsGIIHQivLENya~PGllMlGTDSHtPNaGG 165 (761)
T TIGR01340 86 PASIHCDHLIVGQKGGEKDLARAIATNKEVFDFLESAAKKYGIGFWKPGSGIIHQIVLENYAFPGLLMLGTDSHTPNAGG 165 (761)
T ss_pred CCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHCCCCCCCCCCCCCCCCCCHH
T ss_conf 65012451055477860347888864015778899766541886468888404132123102464100045678886221
Q ss_pred CCC-CCCCCCCCCHHHHH--------HHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 111-22222466466788--------655422578-76635202333334567788877644688999999995167876
Q gi|254780974|r 183 ISG-SVGTFSNIHPYVEQ--------HVADAMGLK-TDPISSQVIARDRHAMYFSVLGVIASSIERVATEIRHLQRTEIL 252 (435)
Q Consensus 183 lgG-AvGt~~~~~~~~~~--------~~a~~LGl~-~~~~~~~~~~rd~~~e~~~~l~~~~~~l~kia~Dl~~l~~~eig 252 (435)
||+ |+|-|+.. .+.- ..=+.||.+ .-..+.|+++.|.++.++..| --+-|.|
T Consensus 166 L~~~~IGVGGAD--AVd~l~g~PWELKaPKilGV~LTGkl~gW~~pKDvIlklag~L----------------TV~GGTG 227 (761)
T TIGR01340 166 LGAIAIGVGGAD--AVDALAGLPWELKAPKILGVKLTGKLNGWTSPKDVILKLAGLL----------------TVRGGTG 227 (761)
T ss_pred HHHHEECCCCHH--HHHHHCCCCHHHCCCCEEEEEEEEEECCCCCHHHHHHHHCCCE----------------EECCCCC
T ss_conf 331200267355--8899718873143880565554101368776224552120411----------------5107854
Q ss_pred CCCCCCCCC
Q ss_conf 000256446
Q gi|254780974|r 253 EVEEFFHPG 261 (435)
Q Consensus 253 ei~ep~~~~ 261 (435)
.|-|+|.+|
T Consensus 228 ~IvEYfG~G 236 (761)
T TIGR01340 228 YIVEYFGPG 236 (761)
T ss_pred EEEEEECCC
T ss_conf 089885588
No 70
>PRK07187 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=24.81 E-value=39 Score=13.94 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=35.3
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCC
Q ss_conf 33201002101232102554222-------3334455431000148899986431-010011122222
Q gi|254780974|r 131 AFEYKDTLTIGRSHGIHAEPTTF-------GLKLAMAYAEFSRSRKRLLTAREEI-AVCAISGSVGTF 190 (435)
Q Consensus 131 a~~~~~~~m~grTh~Q~A~P~T~-------G~~~~~~~~~l~r~~~rl~~~~~~~-~~~~lgGAvGt~ 190 (435)
|.++-+.++.+ ..|||+||-+ |+..+=+.-.+..+++.+....... ...+.||-||..
T Consensus 137 a~~~~~~~~~~--~f~~aTPTl~NaG~~~rgqlsSCFl~~v~Dsl~sI~~~~~~~a~lsk~gGGiG~~ 202 (722)
T PRK07187 137 AFDLLDAILLG--RFQPATPTFLNAGKKRRGEYVSCYLLRVEDNMESISRAISTSLQLSKRGGGVALC 202 (722)
T ss_pred HHHHHHHHHHC--CCCCCCCHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECC
T ss_conf 99999999837--8477997211288899887441683476887799999999999998427766113
No 71
>KOG3124 consensus
Probab=24.14 E-value=47 Score=13.45 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 37899999999872999899999999999999
Q gi|254780974|r 354 LIHSQRILLALTQAGVSREEAYQLVQRNAMKV 385 (435)
Q Consensus 354 ~i~se~i~~~L~~~Gig~~~Ah~~v~~~a~~a 385 (435)
|++.|.+++-=++-|+||+.||++.....-.+
T Consensus 178 f~~ieaLadGgVkmGlPr~lA~~laaqtllGA 209 (267)
T KOG3124 178 FVAIEALADGGVKMGLPRQLAYRLAAQTLLGA 209 (267)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999874445003999899999888998718
No 72
>KOG0993 consensus
Probab=24.10 E-value=24 Score=15.27 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=7.0
Q ss_pred CHHHHHHCCHHHHH
Q ss_conf 01232102415678
Q gi|254780974|r 265 SSSMPHKRNPILTE 278 (435)
Q Consensus 265 SS~MP~K~NP~~~E 278 (435)
||.|||-|....+|
T Consensus 248 ~s~mpq~rk~mtpe 261 (542)
T KOG0993 248 DSVMPQERKAMTPE 261 (542)
T ss_pred CCCCCHHHHCCCHH
T ss_conf 43471433037824
No 73
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=23.03 E-value=50 Score=13.32 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=49.3
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCC-CH--HHHHHHHHHHCCCHHHHHHHHHHHCCHH-HCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 77689998999999983001278-98--9999887463785479999999867934-32255677707787789999985
Q gi|254780974|r 35 AKLGVIPEKSSKNIWEKGRNAVF-NV--DRIMELDSIIKHDVIAFLTHLAEIIGPD-ARFIHQGMTSSDILDTCFSIQLM 110 (435)
Q Consensus 35 ~e~G~ip~~aa~~I~~~~~~~~~-d~--~~~~~~~~~~~~~v~a~~~~l~~~~g~~-~~~iH~G~Ts~Di~~Ta~~l~~r 110 (435)
+.-|++|+++-++|.+.-+.... |. .+++.+++ -+|.-|++.+++-+|-+ +.+++=|+..|-.+ ++=.++
T Consensus 8 q~~g~l~~~a~~a~~~~gdgysvcd~c~~~ld~~~~---P~i~efe~~aAeflG~d~A~~V~Ggt~Gnqa~---i~t~c~ 81 (361)
T cd06452 8 QRGGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEK---PPIKDFHHDLAEFLGMDEARVTPGAREGKFAV---MHSLCE 81 (361)
T ss_pred HHCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCC---CCHHHHHHHHHHHCCCCEEEEECCCCHHHHHH---HHHHHC
T ss_conf 516968999999999867864714520565334769---98899999999871996699946852089999---999847
Q ss_pred HCCHHHHHHHHH
Q ss_conf 110246788888
Q gi|254780974|r 111 RSTDILLEDIDQ 122 (435)
Q Consensus 111 ~~l~~l~~~l~~ 122 (435)
+.-.+|.++...
T Consensus 82 ~GD~VIv~~naH 93 (361)
T cd06452 82 KGDWVVVDGLAH 93 (361)
T ss_pred CCCEEEECCCCH
T ss_conf 998898557512
No 74
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=22.55 E-value=51 Score=13.26 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=7.1
Q ss_pred HHHHCCCCCHHHHHHHHH
Q ss_conf 977768999899999998
Q gi|254780974|r 33 ALAKLGVIPEKSSKNIWE 50 (435)
Q Consensus 33 a~~e~G~ip~~aa~~I~~ 50 (435)
+|.+.|-||+++.+.|.+
T Consensus 45 iQe~~Gyip~eai~~vA~ 62 (169)
T PRK07571 45 AQELFGYLERDLLLYVAR 62 (169)
T ss_pred HHHHCCCCCHHHHHHHHH
T ss_conf 999829989999999999
No 75
>KOG2368 consensus
Probab=21.46 E-value=53 Score=13.12 Aligned_cols=10 Identities=10% Similarity=0.428 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q ss_conf 7899999999
Q gi|254780974|r 355 IHSQRILLAL 364 (435)
Q Consensus 355 i~se~i~~~L 364 (435)
+.+|++...|
T Consensus 262 ~ATEDlvYmL 271 (316)
T KOG2368 262 LATEDLVYML 271 (316)
T ss_pred CHHHHHHHHH
T ss_conf 3178899997
No 76
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM; InterPro: IPR014282 Members of this entry are found in a subset of nitrogen-fixing bacteria and are annotated as nitrogen fixation protein NifM. NifM is homologous to peptidyl-prolyl cis-trans isomerases and appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase..
Probab=21.27 E-value=54 Score=13.10 Aligned_cols=164 Identities=18% Similarity=0.137 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHCCCCHHHHH-----------HHHHHHCCCH-H-HHHHHHHHH
Q ss_conf 8999999999999999777689-998999999983001278989999-----------8874637854-7-999999986
Q gi|254780974|r 18 TKFRIWFEIEAHACDALAKLGV-IPEKSSKNIWEKGRNAVFNVDRIM-----------ELDSIIKHDV-I-AFLTHLAEI 83 (435)
Q Consensus 18 ~~~~~~l~ve~A~a~a~~e~G~-ip~~aa~~I~~~~~~~~~d~~~~~-----------~~~~~~~~~v-~-a~~~~l~~~ 83 (435)
..++...-+|-|.+.+-.+.|+ ||++.-++|...+....-....+. +.++...|.+ + .....+.+.
T Consensus 29 ~~~~RQ~~~E~Av~~~~~~~~~~i~p~~le~~Wahiasryes~~~L~~~L~~~~l~A~~~~a~l~h~~~l~~~L~~v~~q 108 (270)
T TIGR02933 29 QAWQRQRHIEQAVVEAADESAVDIPPSLLEEVWAHIASRYESAQALAAELDEQELAAAEREALLAHHVRLEAQLASVAEQ 108 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99987789999999736522464788889999999873156778999871330489301799999999999999999705
Q ss_pred CC--HHHC----C---------------CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 79--3432----2---------------5567770778778999998511024678888889999873332010021012
Q gi|254780974|r 84 IG--PDAR----F---------------IHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGR 142 (435)
Q Consensus 84 ~g--~~~~----~---------------iH~G~Ts~Di~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~a~~~~~~~m~gr 142 (435)
++ +++. | =|.=.|.||=+|-.-+=.+++.++.|.++|..-.+..+.+|.+|.+.
T Consensus 109 ~p~p~~a~V~~wY~~Ha~~F~rPeQrltrHLLlTv~edfPen~~eAv~~ri~al~rrL~~~~~~FA~~A~rhS~C----- 183 (270)
T TIGR02933 109 APQPDDAEVEAWYRRHAEQFVRPEQRLTRHLLLTVNEDFPENDREAVRERILALLRRLRAKRAAFAELAERHSHC----- 183 (270)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-----
T ss_conf 899960358899888674057713442223320115877988817899999999987468856789998762778-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 3210255422233344554310001488999864310100111222224664
Q gi|254780974|r 143 SHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIH 194 (435)
Q Consensus 143 Th~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~ 194 (435)
|+-++==+.||...=. -+-.|+++.-++..+.|+-.+-|-.+++
T Consensus 184 -------PtAl~gG~LGWv~RG~-LYp~Ld~aLF~L~~G~LS~~~es~lGwH 227 (270)
T TIGR02933 184 -------PTALEGGLLGWVSRGL-LYPQLDAALFQLAEGELSAPIESELGWH 227 (270)
T ss_pred -------CCHHCCCCEEEECCCC-CCHHHHHHHHHHHCCCCCCCHHCHHHHH
T ss_conf -------6202278204430776-6600789999986068886011101467
No 77
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=21.16 E-value=30 Score=14.67 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=13.5
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 100111222224664667886554225
Q gi|254780974|r 180 VCAISGSVGTFSNIHPYVEQHVADAMG 206 (435)
Q Consensus 180 ~~~lgGAvGt~~~~~~~~~~~~a~~LG 206 (435)
.-.+|| |||++.+-.+-+.+.+..+
T Consensus 136 ~~Sl~G--GTGSGlgs~l~e~l~d~yp 160 (431)
T cd02188 136 CHSIAG--GTGSGMGSYLLERLNDRYP 160 (431)
T ss_pred EEECCC--CCCCCHHHHHHHHHHHHHC
T ss_conf 974488--6754089999999998715
No 78
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=20.98 E-value=55 Score=13.06 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=15.4
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9999977768999899999998300
Q gi|254780974|r 29 HACDALAKLGVIPEKSSKNIWEKGR 53 (435)
Q Consensus 29 A~a~a~~e~G~ip~~aa~~I~~~~~ 53 (435)
+|-.+|.+.|-||+++...|.+.+.
T Consensus 28 ~L~~iQ~~~Gyip~~a~~~vA~~l~ 52 (156)
T PRK05988 28 ILHAIQEEFGYIPEDAVPMIAEALN 52 (156)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 9999999829999999999999979
No 79
>TIGR00459 aspS_bact aspartyl-tRNA synthetase; InterPro: IPR004524 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Aspartyl tRNA synthetase 6.1.1.12 from EC is an alpha2 dimer that belongs to class IIb. Structural analysis combined with mutagenesis and enzymology data on the yeast enzyme point to a tRNA binding process that starts by a recognition event between the tRNA anticodon loop and the synthetase anticodon binding module . This family represents aspartyl-tRNA synthetases from the bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). ; GO: 0000166 nucleotide binding, 0004815 aspartate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006422 aspartyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=20.46 E-value=56 Score=12.99 Aligned_cols=179 Identities=16% Similarity=0.245 Sum_probs=88.1
Q ss_pred HCCCC--CCCCC-HHHHHHHHH-----HHHHHCCH--HHHHHHHHHHHHHHHHHHHHCCH--HHHHHH---HHHHHHHHH
Q ss_conf 32255--67770-778778999-----99851102--46788888899998733320100--210123---210255422
Q gi|254780974|r 88 ARFIH--QGMTS-SDILDTCFS-----IQLMRSTD--ILLEDIDQLLESLKKRAFEYKDT--LTIGRS---HGIHAEPTT 152 (435)
Q Consensus 88 ~~~iH--~G~Ts-~Di~~Ta~~-----l~~r~~l~--~l~~~l~~l~~~L~~~a~~~~~~--~m~grT---h~Q~A~P~T 152 (435)
|-.+= +|+-+ .-++.+++. +.+...+. ++.+.....+=... ++-+-... ||==.+ ..=.|.==-
T Consensus 434 gdillnPfg~~~l~~~v~~~lgGkalRl~l~~~l~sWL~d~~~~~flWv~D-ksGkkeklaFP~fE~d~~E~~~~a~HHp 512 (653)
T TIGR00459 434 GDILLNPFGAGDLKKIVLDALGGKALRLKLGKDLGSWLVDPDAFSFLWVVD-KSGKKEKLAFPLFEKDEEEGRLVAAHHP 512 (653)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEE-CCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 878655778605899999850416889998765300023523147178983-7887023427656677652755840578
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCC-CCCCCCC--CCHHHHHHHHH-HCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 233344554310001-488999864310100111-2222246--64667886554-225787663520233333456778
Q gi|254780974|r 153 FGLKLAMAYAEFSRS-RKRLLTAREEIAVCAISG-SVGTFSN--IHPYVEQHVAD-AMGLKTDPISSQVIARDRHAMYFS 227 (435)
Q Consensus 153 ~G~~~~~~~~~l~r~-~~rl~~~~~~~~~~~lgG-AvGt~~~--~~~~~~~~~a~-~LGl~~~~~~~~~~~rd~~~e~~~ 227 (435)
|-.--..|.+.|... -+.+.++|+-| +.| =+|.|+- ..|.+++++-+ .||++... + +.-+.=++.
T Consensus 513 FT~Pk~~~~~~lE~~p~~a~a~aYDlV----lNG~ElGGGSiRIh~~~~Q~~~F~d~Lgid~ee---a---~EkFGFLLe 582 (653)
T TIGR00459 513 FTMPKPEDLEDLETAPEEALAEAYDLV----LNGVELGGGSIRIHDPEVQEKVFEDILGIDPEE---A---REKFGFLLE 582 (653)
T ss_pred CCCCCCCCHHHHHCCHHHHHHHCCCEE----EEEEEECCCEEEECCHHHHHHHHHHHHCCCHHH---H---HHHHHHHHH
T ss_conf 898751227877407455412028768----830698871046428789999998762889899---8---776356875
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCHHH---HHHCCHHHHHHHH
Q ss_conf 8-------87764468899999999516-78760002564465420123---2102415678775
Q gi|254780974|r 228 V-------LGVIASSIERVATEIRHLQR-TEILEVEEFFHPGQKGSSSM---PHKRNPILTENLT 281 (435)
Q Consensus 228 ~-------l~~~~~~l~kia~Dl~~l~~-~eigei~ep~~~~~~GSS~M---P~K~NP~~~E~i~ 281 (435)
+ =+.+|..|-|+. ++|+. .-|-+|- .|++++.||-.| |-++|+..++-+.
T Consensus 583 A~~yGaPPHgG~A~GlDRL~---Mll~~~~nIRDVI-AFPKt~~a~cL~T~APs~~~~~~L~~l~ 643 (653)
T TIGR00459 583 AFKYGAPPHGGLALGLDRLV---MLLTGTDNIRDVI-AFPKTAQASCLLTEAPSEIDEKQLEELS 643 (653)
T ss_pred HHHCCCCCCHHHHHHHHHHH---HHHCCCCCCCEEC-CCCCCCCHHHHHHCCCCCCCHHHHHHHH
T ss_conf 87357685101555589999---9980899722001-7887601243411487757988841132
Done!