RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase
[Candidatus Liberibacter asiaticus str. psy62]
(435 letters)
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional.
Length = 435
Score = 843 bits (2179), Expect = 0.0
Identities = 315/432 (72%), Positives = 379/432 (87%)
Query: 1 MIPRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVD 60
MIPRYSR M +W ETKFRIWFEIEAHAC+A A+LGVIP+++++ IWEKG++A F+V
Sbjct: 1 MIPRYSRPEMVAIWEPETKFRIWFEIEAHACEAQAELGVIPKEAAETIWEKGKDAEFDVA 60
Query: 61 RIMELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDI 120
RI E++++ KHDVIAFLTHLAE +GPDARF+HQGMTSSD+LDTC ++QL+R+ D+LL D+
Sbjct: 61 RIDEIEAVTKHDVIAFLTHLAEFVGPDARFVHQGMTSSDVLDTCLNVQLVRAADLLLADL 120
Query: 121 DQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAV 180
D++L +LKKRAFE+KDT TIGRSHGIHAEPTTFGLKLA YAEF+R+R+RL+ AREEIA
Sbjct: 121 DRVLAALKKRAFEHKDTPTIGRSHGIHAEPTTFGLKLARFYAEFARNRERLVAAREEIAT 180
Query: 181 CAISGSVGTFSNIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVA 240
CAISG+VGTF+NI P VE+HVA +GLK +P+S+QVI RDRHAM+F+ LGVIASSIER+A
Sbjct: 181 CAISGAVGTFANIDPRVEEHVAKKLGLKPEPVSTQVIPRDRHAMFFATLGVIASSIERLA 240
Query: 241 TEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVAL 300
EIRHLQRTE+LE EEFF PGQKGSS+MPHKRNP+LTENLTGL+RL+RS+V+PAMENVAL
Sbjct: 241 IEIRHLQRTEVLEAEEFFSPGQKGSSAMPHKRNPVLTENLTGLARLVRSYVVPAMENVAL 300
Query: 301 WHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRI 360
WHERDISHSSVER+IGPDATI LDFALNRL VIE+LVVYPENM NL + GL+HSQR+
Sbjct: 301 WHERDISHSSVERMIGPDATITLDFALNRLAGVIEKLVVYPENMLKNLNKFGGLVHSQRV 360
Query: 361 LLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYH 420
LLALTQAGVSRE+AY+LVQRNAMKVW+ G FL+ L AD ++R LSE+EI + FD YH
Sbjct: 361 LLALTQAGVSREDAYRLVQRNAMKVWEQGGDFLEELKADPEVRAALSEEEIEELFDLGYH 420
Query: 421 TKHVNAIFERVF 432
TKHV+ IF+RVF
Sbjct: 421 TKHVDTIFKRVF 432
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
Length = 442
Score = 554 bits (1429), Expect = e-158
Identities = 239/444 (53%), Positives = 314/444 (70%), Gaps = 15/444 (3%)
Query: 1 MIPRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVD 60
M+ RY+R M W+++ K+ W E+E A A KLG+IP+ + I +NA F++
Sbjct: 1 MVERYAREEMKKKWTMQAKYDAWLEVEKAAVKAWNKLGLIPDSDCEKIC---KNAKFDIA 57
Query: 61 RIMELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDI 120
RI E++ KHD+IAFLT ++E +G ++RF+H GMTSSD +DT ++Q+ S +++ED+
Sbjct: 58 RIDEIEKTTKHDLIAFLTSVSESLGEESRFVHYGMTSSDCIDTAVALQMRDSLKLIIEDV 117
Query: 121 DQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAV 180
L+E++KKRA E+KDTL +GRSHGIH EP TFGL LA+ Y E R K L E I+V
Sbjct: 118 KNLMEAIKKRALEHKDTLMVGRSHGIHGEPITFGLVLAIWYDEIKRHLKALEHTMEVISV 177
Query: 181 CAISGSVGTFSNIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVA 240
ISG++G F++ +E+ V + +GLK P+S+QVI RDR+A S L ++ASS E++A
Sbjct: 178 GKISGAMGNFAHAPLELEELVCEELGLKPAPVSNQVIQRDRYARLASALALLASSCEKIA 237
Query: 241 TEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVAL 300
IRHLQRTE+ E EE+F GQKGSS+MPHKRNP+L+EN+TGL R+IRS PA+ENVAL
Sbjct: 238 VAIRHLQRTEVYEAEEYFSKGQKGSSAMPHKRNPVLSENITGLCRVIRSFATPALENVAL 297
Query: 301 WHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRI 360
WHERDISHSSVER I PDA I DF L+RL NVIE LVVYPENM NL GL+ SQR+
Sbjct: 298 WHERDISHSSVERFILPDAFITTDFMLHRLNNVIENLVVYPENMMKNLNLTGGLVFSQRV 357
Query: 361 LLALTQAGVSREEAYQLVQRNAMKVW------------KNGAIFLDVLLADVDIRKVLSE 408
LL L + GVSRE+AY++VQRNAMKVW K ++FL LL D D+RK LSE
Sbjct: 358 LLELPKKGVSREDAYKIVQRNAMKVWEDLQQGKAAINEKGESLFLQALLNDEDLRKSLSE 417
Query: 409 KEICDKFDYKYHTKHVNAIFERVF 432
+EI FDY Y+TK+V+AIF+RVF
Sbjct: 418 EEIRACFDYSYYTKNVDAIFKRVF 441
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional.
Length = 431
Score = 532 bits (1372), Expect = e-152
Identities = 219/431 (50%), Positives = 315/431 (73%), Gaps = 4/431 (0%)
Query: 1 MIPRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVD 60
MI RY+ M +W+ KF+ W ++E C+A A+LG IP+++ + I K A F+
Sbjct: 1 MIERYTLPEMGNIWTDTAKFQTWLDVEIAVCEAQAELGKIPQEAVEEIKAK---ANFDPQ 57
Query: 61 RIMELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDI 120
RI+E+++ ++HDVIAFLT++ E +G R+IH GMTSSD+LDT ++QL+ S D+LLE++
Sbjct: 58 RILEIEAEVRHDVIAFLTNVNEYVGDAGRYIHLGMTSSDVLDTGLALQLVASLDLLLEEL 117
Query: 121 DQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAV 180
+ L+++++ +A E+++T+ IGRSHGIHAEP TFG KLA AE R+R+RL+ RE+IAV
Sbjct: 118 EDLIQAIRYQAREHRNTVMIGRSHGIHAEPITFGFKLAGWLAETLRNRERLVRLREDIAV 177
Query: 181 CAISGSVGTFSNIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVA 240
ISG+VGT++N P VE +GLK D S+QVI+RDRHA Y L ++ +S+ER A
Sbjct: 178 GQISGAVGTYANTDPRVEAITCQKLGLKPDTASTQVISRDRHAEYVQTLALVGASLERFA 237
Query: 241 TEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVAL 300
TEIR+LQRT++LEVEE+F GQKGSS+MPHKRNPI +E L+GL+R++RS+ + A+ENVAL
Sbjct: 238 TEIRNLQRTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLSGLARVLRSYAVAALENVAL 297
Query: 301 WHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRI 360
WHERDISHSSVERV+ PD +I L F L + ++++ L+VYPENM+ N+ G++ SQR+
Sbjct: 298 WHERDISHSSVERVMLPDCSILLHFMLREMTDLVKNLLVYPENMRRNMNIYGGVVFSQRV 357
Query: 361 LLALTQAGVSREEAYQLVQRNAMKVW-KNGAIFLDVLLADVDIRKVLSEKEICDKFDYKY 419
LLAL + G+SREEAY+LVQ+NA W G F L AD ++ ++LS E+ D FD +
Sbjct: 358 LLALVEKGMSREEAYRLVQKNAHTAWNTEGGNFRANLEADPEVTQLLSAAELADCFDPQL 417
Query: 420 HTKHVNAIFER 430
H K+++ I++R
Sbjct: 418 HLKNLDVIYQR 428
>gnl|CDD|162114 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP.
Length = 435
Score = 483 bits (1244), Expect = e-137
Identities = 199/435 (45%), Positives = 277/435 (63%), Gaps = 4/435 (0%)
Query: 1 MIPRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVD 60
+ RY M +WS E KF+ W ++E ALA+LGVIP ++ K I K ++
Sbjct: 1 LDERYGTPEMRAIWSEENKFKTWLDVEVALLRALAELGVIPAEAVKEIRAKANFTDVDLA 60
Query: 61 RIMELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDI 120
RI E++++ +HDV A + L E G + FIH G TS+DI+DT ++ L + +I+L +
Sbjct: 61 RIKEIEAVTRHDVKAVVYALKEKCGAEGEFIHFGATSNDIVDTALALLLRDALEIILPKL 120
Query: 121 DQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAV 180
QL++ LK A EYKDT+ +GR+HG HAEPTT G K A+ E R +RLL A+E I V
Sbjct: 121 KQLIDRLKDLAVEYKDTVMLGRTHGQHAEPTTLGKKFALWADEMKRQLERLLQAKERIKV 180
Query: 181 CAISGSVGTFSNIHP---YVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIE 237
ISG+VGT + +P VE+ V + +GLK PIS+Q+ RDRHA L ++A+++E
Sbjct: 181 GGISGAVGTHAAAYPLVEEVEERVTEFLGLKPVPISTQIEPRDRHAELLDALALLATTLE 240
Query: 238 RVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMEN 297
+ A +IR LQRTE EVEE F GQ GSS+MPHKRNPI EN+ GL+R+IRS + PA+EN
Sbjct: 241 KFAVDIRLLQRTEHFEVEEPFGKGQVGSSAMPHKRNPIDFENVCGLARVIRSVLSPALEN 300
Query: 298 VALWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHS 357
V LWHERD++ SSVER+I PD+ I D L V+++LVV PEN+ NLE GLI S
Sbjct: 301 VPLWHERDLTDSSVERIILPDSFILADIMLKTTLKVVKKLVVNPENILRNLELTLGLIAS 360
Query: 358 QRILLALTQAGVSREEAYQLVQRNAMKVW-KNGAIFLDVLLADVDIRKVLSEKEICDKFD 416
+R+L+AL + G+ REEAY++V+ AM + L+ LLAD I K L E+E+ + D
Sbjct: 361 ERVLIALVERGMGREEAYEIVRELAMGAAEVDEPDLLEFLLADERITKYLKEEELAELLD 420
Query: 417 YKYHTKHVNAIFERV 431
+ + + I ERV
Sbjct: 421 PETYIGNAREIVERV 435
>gnl|CDD|181463 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
Length = 449
Score = 407 bits (1047), Expect = e-114
Identities = 173/432 (40%), Positives = 274/432 (63%), Gaps = 4/432 (0%)
Query: 4 RYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIM 63
RY M +WS E K + ++EA A A+LG+IPE++++ I K ++R+
Sbjct: 9 RYGTPEMKRVWSEENKLQKMLDVEAALARAEAELGLIPEEAAEEINRKASTKYVKLERVK 68
Query: 64 ELDSIIKHDVIAFLTHLAEIIGPDA-RFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQ 122
E+++ I HD++A + L+E+ DA ++H G TS+DI+DT ++QL S +IL E + +
Sbjct: 69 EIEAEIHHDIMAVVKALSEVCEGDAGEYVHFGATSNDIIDTATALQLKDSLEILEEKLKK 128
Query: 123 LLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCA 182
L L K+A E+K+T+ IGR+HG HA PTT+G++ A+ +E R +RL + + V
Sbjct: 129 LRGVLLKKAEEHKNTVCIGRTHGQHAVPTTYGMRFAIWASEIQRHLERLEQLKPRVCVGQ 188
Query: 183 ISGSVGT---FSNIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERV 239
++G+VGT F +++ V + +GLK IS+QVI RDRHA + L IA++++++
Sbjct: 189 MTGAVGTQAAFGEKGIEIQKRVMEILGLKPVLISNQVIQRDRHAEFMMFLANIATTLDKI 248
Query: 240 ATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVA 299
EIR+LQRTEI EVEE F Q GSS+MPHKRNPI +E + GL+R++RS+V PA+ N
Sbjct: 249 GLEIRNLQRTEIGEVEEEFGKKQVGSSTMPHKRNPITSEQICGLARVVRSNVEPALLNNP 308
Query: 300 LWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQR 359
LW ERD+++SS ER+I P++ + D L + V+E L PEN++ NLE KGLI ++
Sbjct: 309 LWDERDLTNSSCERIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLELTKGLIMAEA 368
Query: 360 ILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKY 419
+++ L + G+ R+EA++LV++ AMK + G +VLL D ++ K L+E+E+ + D +
Sbjct: 369 VMIELAKRGMGRQEAHELVRQAAMKAHEEGRHLKEVLLEDEEVMKYLTEEELEELLDPET 428
Query: 420 HTKHVNAIFERV 431
+ I E V
Sbjct: 429 YIGTAPEIVENV 440
>gnl|CDD|180551 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
Length = 451
Score = 303 bits (777), Expect = 7e-83
Identities = 150/412 (36%), Positives = 240/412 (58%), Gaps = 6/412 (1%)
Query: 4 RYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIM 63
RY R + ++ E + R ++EA A + G+IP + +I + ++R+
Sbjct: 9 RYGRDQVKYIFDDENRLRYMLKVEAAIAKAEYEYGIIPRDAFLDIKNAVDSNSVRLERVR 68
Query: 64 ELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQL 123
E++S IKHDV+A + L+E ++H G+TS+DI DT ++Q+ I+ +DI L
Sbjct: 69 EIESEIKHDVMALVEALSEQCSAGKNYVHFGVTSNDINDTATALQIHDFVSIIKDDIKNL 128
Query: 124 LESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAI 183
+E+L K EYKD+ +GR+HG HA P TFGLK A+ E SR RL + +
Sbjct: 129 METLIKLIDEYKDSPMMGRTHGQHASPITFGLKFAVYLDEMSRHLDRLTEMGDRAFAGKV 188
Query: 184 SGSVGTFSNIHPY---VEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVA 240
G VGT + + ++ V + +G+ ++ S+Q++ RDR+ Y SV+ I+ ++E++A
Sbjct: 189 LGPVGTGAALGKDALDIQNRVMEILGIYSEIGSTQIVNRDRYIEYLSVINGISVTLEKIA 248
Query: 241 TEIRHLQRTEILEVEEFFH-PGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVA 299
TEIR+LQR EI EV E+F Q GSSSMP K NPI +EN+ LSR IRS +IP E
Sbjct: 249 TEIRNLQRPEIDEVSEYFDEESQVGSSSMPSKVNPINSENVVSLSRFIRSLIIPEYEAGV 308
Query: 300 LWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQR 359
WHERD+++S++ER P A+I +D+ L + +V+ L++ + ++ NLE I S+
Sbjct: 309 TWHERDLTNSALERFTIPYASILIDYVLYNMNDVLSHLIIKEDEIRRNLES-DDSIMSES 367
Query: 360 ILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEI 411
I+ ALT +G+ R++A++ V+R +M+ NG L+ I K + EK +
Sbjct: 368 IVRALTLSGMPRQDAHEFVRRASMEARSNGKSLKSSLIEA-GILKYIDEKTL 418
>gnl|CDD|181586 PRK08937, PRK08937, adenylosuccinate lyase; Provisional.
Length = 216
Score = 237 bits (607), Expect = 4e-63
Identities = 100/195 (51%), Positives = 144/195 (73%)
Query: 228 VLGVIASSIERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLI 287
VL +IA+S+E+ A EIR LQR+EI EVEE F GQKGSS+MPHKRNPI +E +TGL+R++
Sbjct: 22 VLALIATSLEKFANEIRLLQRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLARVL 81
Query: 288 RSHVIPAMENVALWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDN 347
RS+++ A+ENV LWHERD+SHSS ER+ PDA + LD+ LNR N++E LVV+PEN++ N
Sbjct: 82 RSYLVTALENVPLWHERDLSHSSAERIALPDAFLALDYILNRFVNILENLVVFPENIERN 141
Query: 348 LEQLKGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLS 407
L++ G I ++R+LL L + G+ REEA++L++ AM+ WKN ++L AD K L+
Sbjct: 142 LDKTLGFIATERVLLELVEKGMGREEAHELIREKAMEAWKNQKDLRELLEADERFTKQLT 201
Query: 408 EKEICDKFDYKYHTK 422
++E+ + FD +
Sbjct: 202 KEELDELFDPEAFVG 216
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 452
Score = 151 bits (384), Expect = 3e-37
Identities = 121/417 (29%), Positives = 196/417 (47%), Gaps = 15/417 (3%)
Query: 10 MTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSII 69
M ++S + + EA A A GVIP + I ++D + + ++
Sbjct: 17 MRAIFSDRATVQRMLDFEAALARAEAACGVIPAAAVAPIEAACDAERLDLDALAQAAALA 76
Query: 70 KHDVIAFLTHL-AEIIGPD---ARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLE 125
+ I + L A++ D AR++H G TS DI+DT +QL + D+L D+D+L +
Sbjct: 77 GNLAIPLVKQLTAQVAARDAEAARYVHWGATSQDIIDTGLVLQLRDALDLLEPDLDRLCD 136
Query: 126 SLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISG 185
+L A ++ T +GR+ A P T GLK A R R+RL R V G
Sbjct: 137 ALATLAARHRATPMVGRTWLQQALPVTLGLKFAGWLDALLRHRQRLAALRPRALVLQFGG 196
Query: 186 SVGTFSNIH---PYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVATE 242
+ GT +++ V Q +A + L P RDR A + S LG++A ++ ++A +
Sbjct: 197 AAGTLASLGEQALPVAQALAAELQLAL-PALPWHTQRDRIAEFASALGLLAGTLGKIARD 255
Query: 243 IRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPI-LTENLTGLSRL--IRSHVIPAMENVA 299
+ L +TE+ EV E G+ GSS+MPHKRNP+ LT +R + + + AM
Sbjct: 256 VSLLMQTEVGEVFEPAAAGKGGSSTMPHKRNPVGCAAVLTAATRAPGLVATLFAAM---P 312
Query: 300 LWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQR 359
HER + E P+ AL ++ ++E L V M+ NL+ GLI ++
Sbjct: 313 QEHERALGGWHAEWDTLPELACLAAGALAQMAQIVEGLEVDAARMRANLDLTHGLILAEA 372
Query: 360 ILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFD 416
++LAL + R +A+ LV++ + + G DVL D + LS + D
Sbjct: 373 VMLALADR-IGRLDAHHLVEQASKRAVAEGRHLRDVLAEDPQVSAHLSPAALDRLLD 428
>gnl|CDD|162853 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate
cycloisomerase. Members of this family are
3-carboxy-cis,cis-muconate cycloisomerase, the enzyme
the catalyzes the second step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. All members of the seed alignment for
this model were chosen from within protocatechuate
degradation operons of at least three genes of the
pathway, from genomes with the complete pathway through
beta-ketoadipate.
Length = 338
Score = 141 bits (357), Expect = 4e-34
Identities = 90/283 (31%), Positives = 135/283 (47%), Gaps = 14/283 (4%)
Query: 10 MTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSII 69
L+S R + EA A A G+IP +++ I E A D + L
Sbjct: 11 ALELFSDRAFLRAMLDFEAALARAQADAGLIPAEAAAAI-EAACAA-AAPD-LEALAHAA 67
Query: 70 KHD---VIAFLTHLAEIIGPD-ARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLE 125
VI + L + + + AR++H+G TS D++DT +QL + D+LL D+ +L +
Sbjct: 68 ATAGNPVIPLVKALRKAVAGEAARYVHRGATSQDVIDTSLMLQLRDALDLLLADLGRLAD 127
Query: 126 SLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISG 185
+L A ++DT GR+ A PTTFGLK A A R+R RL R G
Sbjct: 128 ALADLAARHRDTPMTGRTLLQQAVPTTFGLKAAGWLAAVLRARDRLAALRTRALPLQFGG 187
Query: 186 SVGTFSNIHPY---VEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVATE 242
+ GT + + V +A +GL P RDR A + S L ++A ++ ++A +
Sbjct: 188 AAGTLAALGTRGGAVAAALAARLGL-PLPALPWHTQRDRIAEFGSALALVAGALGKIAGD 246
Query: 243 IRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSR 285
I L +TE+ E F G GSS+MPHKRNP+ L +R
Sbjct: 247 IALLSQTEV---GEVFEAGGGGSSAMPHKRNPVGAALLAAAAR 286
>gnl|CDD|150980 pfam10397, ADSL_C, Adenylosuccinate lyase C-terminus. This is the
C-terminal seven alpha helices of the structure whose
full length represents the enzyme adenylosuccinate
lyase. This sequence lies C-terminal to the conserved
motif necessary for beta-elimination reactions,
Adenylosuccinate lyase catalyses two steps in the
synthesis of purine nucleotides: the conversion of
succinylaminoimidazole-carboxamide ribotide into
aminoimidazole-carboxamide ribotide, the eighth step of
the de novo pathway, and the formation of adenosine
monophosphate (AMP) from adenylosuccinate, the second
step in the conversion of inosine monophosphate into
AMP.
Length = 81
Score = 113 bits (285), Expect = 1e-25
Identities = 40/81 (49%), Positives = 54/81 (66%)
Query: 352 KGLIHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEI 411
GLI S+R+LLAL + G+ REEAY+LVQR AMK W+ G +VLLAD ++ LSE+E+
Sbjct: 1 GGLIFSERVLLALAEKGLGREEAYELVQRAAMKAWEEGRDLREVLLADPEVAAYLSEEEL 60
Query: 412 CDKFDYKYHTKHVNAIFERVF 432
FD Y+ H + I +RV
Sbjct: 61 DALFDPAYYLGHADEIVDRVL 81
>gnl|CDD|181757 PRK09285, PRK09285, adenylosuccinate lyase; Provisional.
Length = 456
Score = 84.0 bits (209), Expect = 8e-17
Identities = 103/372 (27%), Positives = 168/372 (45%), Gaps = 65/372 (17%)
Query: 19 KFRIWFEIEAHACDALAKLGVIPE--KSSKNIWEKGRNAV--FNVD---RIMELDSIIKH 71
++R+ E+E ALA IPE S R V F+ + RI E++ H
Sbjct: 34 RYRVQVEVEW--LIALAAHPGIPEVPPFSAEANAFLRAIVENFSEEDAARIKEIERTTNH 91
Query: 72 DVIA---FL----THLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRST---DILLEDID 121
DV A FL L E+ + FIH TS DI + S LM ++LL +
Sbjct: 92 DVKAVEYFLKEKLAGLPEL-EAVSEFIHFACTSEDINNL--SHALMLKEAREEVLLPALR 148
Query: 122 QLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVC 181
+L+++LK+ A EY D + R+HG A PTT G ++A R K+L EI
Sbjct: 149 ELIDALKELAHEYADVPMLSRTHGQPATPTTLGKEMANVAYRLERQLKQL--EAVEIL-G 205
Query: 182 AISGSVGTFSNIH---------PYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVI 232
I+G+VG + N H + +++GL +P ++Q+ D A F +
Sbjct: 206 KINGAVGNY-NAHLAAYPEVDWHAFSREFVESLGLTWNPYTTQIEPHDYIAELFDAVARF 264
Query: 233 ASSIERVATEI------RHL-QRTEILEVEEFFHPGQKGSSSMPHKRNPILTE----NLT 281
+ + + ++ + Q+T+ E+ GSS+MPHK NPI E NL
Sbjct: 265 NTILIDLDRDVWGYISLGYFKQKTKAGEI---------GSSTMPHKVNPIDFENSEGNL- 314
Query: 282 GLSRLIRSHV---IPAMENVALWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELV 338
GL+ + H+ +P ++ W +RD++ S+V R +G A + A + L + +L
Sbjct: 315 GLANALLEHLAAKLP----ISRW-QRDLTDSTVLRNLGV-AFGYSLIAYDSLLKGLGKLE 368
Query: 339 VYPENMKDNLEQ 350
V + ++L+
Sbjct: 369 VNEARLAEDLDA 380
>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 351
Score = 79.3 bits (196), Expect = 2e-15
Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 22/283 (7%)
Query: 13 LWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIKHD 72
L+S E EA +A A+ G+IP ++++ I F D + L D
Sbjct: 23 LFSAEADIAAMLAFEAALAEAEAEHGIIPAEAAERIAA--ACETFEPD-LAALRHATARD 79
Query: 73 ---VIAFLTHLAEIIGPDAR-FIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLK 128
V A + L +G +A +H G TS D++DT ++L +++IL + L+ L
Sbjct: 80 GVVVPALVRQLRAAVGEEAAAHVHFGATSQDVIDTSLMLRLKAASEILAARLGALIARLD 139
Query: 129 KRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGSVG 188
+ +G + A P T +LA A R R RL R ++ G+ G
Sbjct: 140 ALEATFGQNALMGHTRMQAAIPITVADRLASWRAPLLRHRDRLEALRADVFPLQFGGAAG 199
Query: 189 T---FSNIHPYVEQHVADAMGLKTDPI-SSQVIARDRHAMYFSVLGVIASSIERVATEIR 244
T V +A +GL+ P SQ RD A + +L ++ S+ + +I
Sbjct: 200 TLEKLGGKAAAVRARLAKRLGLEDAPQWHSQ---RDFIADFAHLLSLVTGSLGKFGQDIA 256
Query: 245 HL--QRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSR 285
+ EI G GSS+MPHK+NP+ E L L+R
Sbjct: 257 LMAQAGDEISLS------GGGGSSAMPHKQNPVAAETLVTLAR 293
>gnl|CDD|178440 PLN02848, PLN02848, adenylosuccinate lyase.
Length = 458
Score = 72.5 bits (178), Expect = 2e-13
Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 52/332 (15%)
Query: 19 KFRIWFEIEAHACDALAKLGVIPE-------KSSKNIWEKGRNAVFNVDRIMELDSIIK- 70
++R+ E++ L KL IPE N + +G A F+VD +E+ I +
Sbjct: 37 RYRVLVEVKW-----LLKLSQIPEVTEVPPFSDEANSFLEGIIAGFSVDDALEVKKIERV 91
Query: 71 --HDVIAFLTHLAEIIGPDAR------FIHQGMTSSDILDTCFSIQLMRSTD-ILLEDID 121
HDV A L + F H TS DI + ++ L + ++L +D
Sbjct: 92 TNHDVKAVEYFLKQKCKSHPELAKVLEFFHFACTSEDINNLSHALMLKEGVNSVVLPTMD 151
Query: 122 QLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVC 181
++++++ A E+ + R+HG A PTT G ++A SR RK+L E
Sbjct: 152 EIIKAISSLAHEFAYVPMLSRTHGQPASPTTLGKEMANFAYRLSRQRKQL---SEVKIKG 208
Query: 182 AISGSVGTFSNIH----PYVE-QHVAD----AMGLKTDPISSQVIARDRHAMYFSVLGVI 232
+G+VG + N H P V+ VA+ ++GL +P +Q+ D A F
Sbjct: 209 KFAGAVGNY-NAHMSAYPEVDWPAVAEEFVTSLGLTFNPYVTQIEPHDYMAELF------ 261
Query: 233 ASSIERVATEIRHLQR-----TEILEVEEFFHPGQKGSSSMPHKRNPILTENLTG---LS 284
+++ R + R + ++ G+ GSS+MPHK NPI EN G L+
Sbjct: 262 -NAVSRFNNILIDFDRDIWSYISLGYFKQITKAGEVGSSTMPHKVNPIDFENSEGNLGLA 320
Query: 285 RLIRSHVIPAMENVALWHERDISHSSVERVIG 316
SH+ + ++ +RD++ S+V R +G
Sbjct: 321 NAELSHLSMKLP-ISRM-QRDLTDSTVLRNMG 350
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional.
Length = 473
Score = 72.3 bits (178), Expect = 2e-13
Identities = 74/265 (27%), Positives = 115/265 (43%), Gaps = 47/265 (17%)
Query: 92 HQGMTSS--DILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAE 149
H M S D+ T I + + LL + L + +++A E+ + +GR+ A
Sbjct: 134 HVNMAQSTNDVFPTAIRIAALNLLEGLLAAMGALQDVFEEKAAEFDHVIKMGRTQLQDAV 193
Query: 150 PTTFGLKLAMAYAE-FSRSRKRLLTAREEIAVCAISGS-VGTFSNIHP-YVEQ---HVAD 203
P T G + + AYA R RKR+ ARE + + G+ VGT N P Y+E+ H+A
Sbjct: 194 PITLGQEFS-AYARALKRDRKRIQQAREHLYEVNLGGTAVGTGLNADPEYIERVVKHLAA 252
Query: 204 AMGLKTDPISSQVIARDRHAMYFSVLGVI---ASSIERVATEIRHLQ---RTEILEVEEF 257
GL V A + V G + A ++ ++A ++R L RT + E+
Sbjct: 253 ITGLPLVGAEDLVDATQNTDAFVEVSGALKVCAVNLSKIANDLRLLSSGPRTGLGEI--N 310
Query: 258 FHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMEN-VALWHERDISHSSVERVIG 316
Q GSS MP K NP V+P + N +A +VIG
Sbjct: 311 LPAVQPGSSIMPGKVNP----------------VMPEVVNQIAF------------QVIG 342
Query: 317 PDATIHLDFALNRLK-NVIEELVVY 340
D TI L +L+ NV+E ++ +
Sbjct: 343 NDVTITLAAEAGQLELNVMEPVIAF 367
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 72.1 bits (178), Expect = 3e-13
Identities = 76/274 (27%), Positives = 118/274 (43%), Gaps = 54/274 (19%)
Query: 28 AHACDALAKLGVIPEKSS-------KNIWEKGRNAVFNVDRIMELDSIIKHDVIAFL-TH 79
AHA LAK G++ E+ + I E+ F +E D+ +
Sbjct: 42 AHA-RMLAKQGILSEEEAEKILAGLDEILEEIEAGKFEFSPELE-------DIHMAIEAR 93
Query: 80 LAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLT 139
L E IG +H G + +D + T + L D + E + +L ++L A E+ DT+
Sbjct: 94 LTERIGDVGGKLHTGRSRNDQVATDLRLYLRDEIDEIAELLLELQKALLDLAEEHADTIM 153
Query: 140 IGRSHGIHAEPTTFGLKLAMAYAE-FSRSRKRLLTAREEIAVC-----AISGSVGTFSNI 193
G +H A+P TFG L +AYAE +R +RL AR+ + A++G+ TF I
Sbjct: 154 PGYTHLQRAQPVTFGHHL-LAYAEMLARDLERLRDARKRVNRSPLGSAALAGT--TF-PI 209
Query: 194 HPYVEQHVADAMGLKT------DPISSQVIARDRHAMYF-SVLGVIASSIERVATEIRHL 246
+ A+ +G D +S RD A+ F S ++ + R+A E+
Sbjct: 210 DR---ERTAELLGFDGVTENSLDAVSD----RD-FALEFLSAASLLMVHLSRLAEEL--- 258
Query: 247 QRTEILEVEEFFH----PGQ--KGSSSMPHKRNP 274
IL + F P GSS MP K+NP
Sbjct: 259 ----ILWSSQEFGFVELPDAFSTGSSIMPQKKNP 288
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens.
Length = 455
Score = 71.2 bits (175), Expect = 5e-13
Identities = 71/273 (26%), Positives = 113/273 (41%), Gaps = 33/273 (12%)
Query: 33 ALAKLGVIPEKSSKNI-------WEKGRNAVFNVDRIMELDSIIKHDVIAFLTHLAEIIG 85
L K G++ E+ + I E+GR F +D + + I H I L + +G
Sbjct: 41 MLKKAGILTEEEAAKIIEGLNELKEEGREGPFILD--PDDEDI--HMAIE--RELIDRVG 94
Query: 86 PD-ARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSH 144
D +H G + +D + T + L L E + L ++L + A ++ +TL G +H
Sbjct: 95 EDLGGKLHTGRSRNDQVATDLRLYLRDHVLELAEALLDLQDALIELAEKHVETLMPGYTH 154
Query: 145 GIHAEPTTFGLKLAMAYAE-FSRSRKRLLTAREEIAVCAI-SGSVGTFSNIHPYVEQHVA 202
A+P T L +AYAE R +RL A + + V + SG++ +
Sbjct: 155 LQRAQPITLAHHL-LAYAEMLLRDYERLQDALKRVNVSPLGSGALAG----TGFPIDREY 209
Query: 203 DAMGLKTDPISSQ----VIARDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEVE--- 255
A L D ++ V RD V +I + R A ++ E VE
Sbjct: 210 LAELLGFDAVTENSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWSTGEFGFVELPD 269
Query: 256 EFFHPGQKGSSSMPHKRNPILTENLTG-LSRLI 287
EF GSS MP K+NP + E + G R+
Sbjct: 270 EF----SSGSSIMPQKKNPDVAELIRGKTGRVQ 298
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II. Putative
fumarases from several species (Mycobacterium
tuberculosis, Streptomyces coelicolor, Pseudomonas
aeruginosa) branch deeply, although within the same
branch of a phylogenetic tree rooted by aspartate
ammonia-lyase sequences, and score between the trusted
and noise cutoffs.
Length = 458
Score = 65.1 bits (159), Expect = 3e-11
Identities = 63/252 (25%), Positives = 111/252 (44%), Gaps = 28/252 (11%)
Query: 48 IWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHLAEIIGPDARFIH------QGMTSSDIL 101
+W+ G N M ++ +I + I L +G + +H + +S+D
Sbjct: 90 VWQTGSGTQSN----MNVNEVIANRAIE---LLGGKLG-SKQPVHPNDHVNKSQSSNDTF 141
Query: 102 DTCFSIQLMRST-DILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMA 160
T I + + + L+ ++ L ++L ++ E+ + IGR+H A P T G + +
Sbjct: 142 PTAMHIAAVLAIKNQLIPALENLKKTLDAKSKEFAHIVKIGRTHLQDATPLTLGQEFSGY 201
Query: 161 YAEFSRSRKRLLTAREEIAVCAISGS-VGTFSNIHP-YVE---QHVADAMGLKTDPISSQ 215
A+ +R+ + + AI G+ VGT N HP + E + +A GL ++
Sbjct: 202 VAQLEHGLERIAYSLPHLYELAIGGTAVGTGLNTHPGFDEKVAEEIAKETGLPFVTAPNK 261
Query: 216 VIARDRH--AMYFS-VLGVIASSIERVATEIRHL---QRTEILEVEEFFHPGQKGSSSMP 269
A H + L +A+S+ ++A +IR L R + E+ F + GSS MP
Sbjct: 262 FEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPRCGLGEL--FIPENEPGSSIMP 319
Query: 270 HKRNPILTENLT 281
K NP E LT
Sbjct: 320 GKVNPTQCEALT 331
>gnl|CDD|162062 TIGR00839, aspA, aspartate ammonia-lyase. Fumarate hydratase
scores as high as 570 bits against this model.
Length = 468
Score = 64.9 bits (158), Expect = 4e-11
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 9/192 (4%)
Query: 96 TSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGL 155
+++D T F I + S L++ I+QL + +++A E+ D L +GR+ A P T G
Sbjct: 138 STNDAYPTGFRIAVYSSLIKLVDAINQLRDGFEQKAKEFADILKMGRTQLQDAVPMTLGQ 197
Query: 156 KLAMAYAEFSRSRKRLLTAREEIAVCAISGS-VGTFSNIHP----YVEQHVADAMGLKTD 210
+ K + E + + + +GT N P V + +A+ GL
Sbjct: 198 EFEAFSILLEEEVKNIKRTAELLLEVNLGATAIGTGLNTPPEYSPLVVKKLAEVTGLPCV 257
Query: 211 PISSQVIAR---DRHAMYFSVLGVIASSIERVATEIRHLQRTEILEVEEFFHPG-QKGSS 266
P + + A + M L +A + ++ ++R L + E P Q GSS
Sbjct: 258 PAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSS 317
Query: 267 SMPHKRNPILTE 278
MP K NP++ E
Sbjct: 318 IMPAKVNPVVPE 329
>gnl|CDD|183393 PRK12273, aspA, aspartate ammonia-lyase; Provisional.
Length = 472
Score = 57.4 bits (140), Expect = 7e-09
Identities = 65/237 (27%), Positives = 95/237 (40%), Gaps = 54/237 (22%)
Query: 103 TCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYA 162
T I L+ S LL+ ++QL E+ + +A E+ D L +GR+ A P T G + AYA
Sbjct: 149 TAIRIALLLSLRKLLDALEQLQEAFEAKAKEFADILKMGRTQLQDAVPMTLGQEFG-AYA 207
Query: 163 E-FSRSRKRLLTAREEIAVCAISGS-VGTFSNIHPY----VEQHVADAMGLKTDPISSQV 216
+ RKRL A E + + + +GT N P V + +A+ GL P + +
Sbjct: 208 VALAEDRKRLYRAAELLREVNLGATAIGTGLNAPPGYIELVVEKLAEITGLPLVP-AEDL 266
Query: 217 IAR----DRHAMYFSVLGVIASSIERVATEIRHLQ---RT---EI-LEVEEFFHPGQKGS 265
I L +A + ++ ++R L R EI L Q GS
Sbjct: 267 IEATQDTGAFVEVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLP------AVQAGS 320
Query: 266 SSMPHKRNPILTENLTGLSRLIRSHVIPAMEN-VALWHERDISHSSVERVIGPDATI 321
S MP K NP VIP + N V +VIG D T+
Sbjct: 321 SIMPGKVNP----------------VIPEVVNQVCF------------QVIGNDTTV 349
>gnl|CDD|167327 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 57.2 bits (138), Expect = 9e-09
Identities = 53/211 (25%), Positives = 82/211 (38%), Gaps = 13/211 (6%)
Query: 79 HLAEIIGPD-ARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDT 137
+L E +G D + + +DI T + L +T + + +L +L +A D
Sbjct: 497 YLIERLGEDVGGVLQTARSRNDINATTTKLHLREATSRAFDALWRLRRALVFKASANVDC 556
Query: 138 LTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGSVG--TFSNIHP 195
S A P + G L +R L E I VC + G T I P
Sbjct: 557 ALPIYSQYQPALPGSLGHYLLAVDGALARETHALFALFEHIDVCPLGAGAGGGTTFPIDP 616
Query: 196 YVEQHVADAMGLKTDPISS--QVIARDRHAMYFSVLGVIASSIERVATEIRHLQRTEILE 253
VA +G + +S V +RD + S + I++ + R+A + LQ E
Sbjct: 617 EF---VARLLGFEQPAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQD---LQLWTTRE 670
Query: 254 VEEFFHPGQ--KGSSSMPHKRNPILTENLTG 282
P GSS +P K+NP L E + G
Sbjct: 671 FALVSLPDALTGGSSMLPQKKNPFLLEFVKG 701
>gnl|CDD|184723 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional.
Length = 479
Score = 54.2 bits (130), Expect = 6e-08
Identities = 71/326 (21%), Positives = 132/326 (40%), Gaps = 50/326 (15%)
Query: 37 LGVIPEKSSKNIWEKGRNAVFNVDRI---------MELDSIIKHDVIAFLTHLA---EII 84
G ++++ I + + F VD I M + +I + + L I
Sbjct: 76 KGGAIAEAAQEILDGKWHDHFIVDPIQGGAGTSMNMNANEVIANRALELLGMEKGDYHYI 135
Query: 85 GPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSH 144
P++ ++ +++D T I + + + LL+ + + + + +A ++ + +GR+H
Sbjct: 136 SPNSH-VNMAQSTNDAFPTAIHIATLNALEGLLQTMGYMHDVFELKAEQFDHVIKMGRTH 194
Query: 145 GIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEI-AVCAISGSVGTFSNIHP-YVE---Q 199
A P G + R KR+ +R+ + V + +VGT N P Y+E +
Sbjct: 195 LQDAVPIRLGQEFKAYSRVLERDMKRIQQSRQHLYEVNMGATAVGTGLNADPEYIEAVVK 254
Query: 200 HVADAMGLKTDPISSQVIARDRHAMYFSV---LGVIASSIERVATEIRHLQRTEILEVEE 256
H+A L V A Y V L V ++ ++A ++R + + + E
Sbjct: 255 HLAAISELPLVGAEDLVDATQNTDAYTEVSAALKVCMMNMSKIANDLRLMASGPRVGLAE 314
Query: 257 FFHPG-QKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVALWHERDISHSSVERVI 315
P Q GSS MP K NP++ E + +A +VI
Sbjct: 315 IMLPARQPGSSIMPGKVNPVMPE---------------VINQIAF------------QVI 347
Query: 316 GPDATIHLDFALNRLK-NVIEELVVY 340
G D TI L +L+ NV+E ++V+
Sbjct: 348 GNDHTICLASEAGQLELNVMEPVLVF 373
>gnl|CDD|179045 PRK00485, fumC, fumarate hydratase; Reviewed.
Length = 464
Score = 53.6 bits (130), Expect = 9e-08
Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 17/179 (9%)
Query: 116 LLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAE-FSRSRKRLLTA 174
LL ++ L ++L +A E+ D + IGR+H A P T G + + YA +R+ A
Sbjct: 160 LLPALEHLRDTLAAKAEEFADIVKIGRTHLQDATPLTLGQEFS-GYAAQLEHGIERIEAA 218
Query: 175 REEIAVCAISGS-VGTFSNIHP----YVEQHVADAMGL--KTDPISSQVIA-RDRHAMYF 226
+ A+ G+ VGT N HP V + +A+ GL T P + +A D
Sbjct: 219 LPHLYELALGGTAVGTGLNAHPGFAERVAEELAELTGLPFVTAPNKFEALAAHDALVEAS 278
Query: 227 SVLGVIASSIERVATEIRHLQ---RTEILEVEEFFHPG-QKGSSSMPHKRNPILTENLT 281
L +A S+ ++A +IR L R + E+ P + GSS MP K NP E LT
Sbjct: 279 GALKTLAVSLMKIANDIRWLASGPRCGLGEISL---PENEPGSSIMPGKVNPTQCEALT 334
>gnl|CDD|178252 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 52.0 bits (125), Expect = 3e-07
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 20/215 (9%)
Query: 80 LAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLT 139
L E+IG A+ +H + +D + T + + D++ + I L +L + A + D +
Sbjct: 106 LTELIGEPAKKLHTARSRNDQVATDTRLWCRDAIDVIRKRIKTLQVALVELAEKNVDLVV 165
Query: 140 IGRSHGIHAEPTTFGLKLAMAYAE-FSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVE 198
G +H A+P +++ E R RL+ R + C + GS P
Sbjct: 166 PGYTHLQRAQPVLLS-HWLLSHVEQLERDAGRLVDCRPRVNFCPL-GSCALAGTGLPIDR 223
Query: 199 QHVADAMGLKTDPISSQVIA---RDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEVE 255
A +G T P+ + + A RD F + + A+SI A + L +L
Sbjct: 224 FMTAKDLGF-TAPMRNSIDAVSDRD-----FVLEFLFANSI--TAIHLSRLGEEWVLWAS 275
Query: 256 E---FFHPGQK---GSSSMPHKRNPILTENLTGLS 284
E F P GSS MP K+NP E + G S
Sbjct: 276 EEFGFVTPSDAVSTGSSIMPQKKNPDPMELVRGKS 310
>gnl|CDD|177743 PLN00134, PLN00134, fumarate hydratase; Provisional.
Length = 458
Score = 48.9 bits (117), Expect = 2e-06
Identities = 62/229 (27%), Positives = 98/229 (42%), Gaps = 21/229 (9%)
Query: 72 DVIAFLTHLAEIIGP---DARFIH------QGMTSSDILDTCFSIQL-MRSTDILLEDID 121
+VIA AEI+G + +H + +S+D T I L+ +
Sbjct: 100 EVIANRA--AEILGGPVGEKSPVHPNDHVNRSQSSNDTFPTAMHIAAATEIHSRLIPALK 157
Query: 122 QLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAVC 181
+L ESL+ ++FE+KD + IGR+H A P T G + + + R+ +
Sbjct: 158 ELHESLRAKSFEFKDIVKIGRTHLQDAVPLTLGQEFSGYATQVKYGLNRVQCTLPRLYEL 217
Query: 182 AISGS-VGTFSNIHPYVEQHVADAMGLKTD-PISS------QVIARDRHAMYFSVLGVIA 233
A G+ VGT N ++ +A A+ +T P + + A D L +A
Sbjct: 218 AQGGTAVGTGLNTKKGFDEKIAAAVAEETGLPFVTAPNKFEALAAHDAFVELSGALNTVA 277
Query: 234 SSIERVATEIRHLQRTEILEVEEFFHP-GQKGSSSMPHKRNPILTENLT 281
S+ ++A +IR L + E P + GSS MP K NP E LT
Sbjct: 278 VSLMKIANDIRLLGSGPRCGLGELNLPENEPGSSIMPGKVNPTQCEALT 326
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 47.1 bits (112), Expect = 8e-06
Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 26/208 (12%)
Query: 80 LAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLT 139
L +G + +H G + +D + T + + LL +DQL + + A ++ T+
Sbjct: 92 LIGKVGDLGKKLHTGRSRNDQVATDLKLWCRQQGQQLLLALDQLQQQMVNVAERHQGTVL 151
Query: 140 IGRSHGIHAEPTTFGLKLAMAYAE-FSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVE 198
G +H A+P TF +AY E F R RL A + C + GS +P
Sbjct: 152 PGYTHLQRAQPVTFA-HWCLAYVEMFERDYSRLEDALTRLDTCPL-GSGALAGTAYPIDR 209
Query: 199 QHVADAMGLKTDPISSQVIARDR-HAMYFSVLGVIASSIERVATEIRHLQRTEILEVEEF 257
+ +A +G + +S DR H M L +AS + HL R + E F
Sbjct: 210 EALAHNLGFRRATRNSLDSVSDRDHVME---LMSVAS------ISMLHLSR--LAEDLIF 258
Query: 258 FHPGQ-----------KGSSSMPHKRNP 274
++ G+ GSS MP K+NP
Sbjct: 259 YNSGESGFIELADTVTSGSSLMPQKKNP 286
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional.
Length = 464
Score = 44.5 bits (105), Expect = 5e-05
Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 14/206 (6%)
Query: 91 IHQGMTSSDILDTCFSIQLMRST-DILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAE 149
+++ +S+D T I ++ + LL I +L L +++ + + GR+H + A
Sbjct: 132 VNRSQSSNDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAEQSARHAKLVKTGRTHMMDAT 191
Query: 150 PTTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGS-VGTFSNI-HPYVEQHVADAMGL 207
P TFG +L+ A+ + + + A + A G+ VGT N H + E A+ L
Sbjct: 192 PITFGQELSAFVAQLDYAERAIRAALPAVCELAQGGTAVGTGLNAPHGFAEAIAAELAAL 251
Query: 208 KTDPISS---QVIARDRHAMYFSVLG---VIASSIERVATEIRHL---QRTEILEVEEFF 258
P + + A H S+ G +A ++ ++A ++R L R + EV
Sbjct: 252 SGLPFVTAPNKFAALAGHEPLVSLSGALKTLAVALMKIANDLRLLGSGPRAGLAEVR--L 309
Query: 259 HPGQKGSSSMPHKRNPILTENLTGLS 284
+ GSS MP K NP E L+ L+
Sbjct: 310 PANEPGSSIMPGKVNPTQCEALSMLA 335
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 40.0 bits (93), Expect = 0.001
Identities = 51/216 (23%), Positives = 81/216 (37%), Gaps = 44/216 (20%)
Query: 91 IHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEP 150
+H G + +D+ T + + L R L+E L ES+ + A ++K+T+ +H A+P
Sbjct: 110 MHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLLQESILQLAADHKETIMPAYTHTQPAQP 169
Query: 151 TTFGLKLAMAYAEFSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAMGLKTD 210
TTFG Y R +R+ + N P MG
Sbjct: 170 TTFGHYTLAIYDTMQRDLERMKKTYK-------------LLNQSP---------MGAAAL 207
Query: 211 PISSQVIARDRHAMYFSVLGVIASSIERVA-----TEIRHLQRTEILEVEEFFH------ 259
+S I R+R A VI +S + VA E+ L + + H
Sbjct: 208 STTSFPIKRERVADLLGFTNVIENSYDAVAGADYLLEVSSLLMVMMTNTSRWIHDFLLLA 267
Query: 260 -----------PGQKGSSSMPHKRNPILTENLTGLS 284
P + SS MP KRNP+ E+ ++
Sbjct: 268 TKEYDGITVARPYVQISSIMPQKRNPVSIEHARAIT 303
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 34.6 bits (80), Expect = 0.056
Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 34/176 (19%)
Query: 116 LLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAE-FSRSRKRLLTA 174
LL + QL +L + A +D + G +H A+P TF +AY E +R RL A
Sbjct: 128 LLTALRQLQSALVETAENNQDAVMPGYTHLQRAQPVTFA-HWCLAYVEMLARDESRLQDA 186
Query: 175 REEIAVCAI-SGSV-GTFSNIHPYVEQHVADAMGLKTDPISS--QVIARDRHAMYFSVLG 230
+ + V + SG++ GT I + +A +G + +S V RD H VL
Sbjct: 187 LKRLDVSPLGSGALAGTAYEID---REQLAGWLGFASATRNSLDSVSDRD-H-----VLE 237
Query: 231 VI-ASSIERVATEIRHLQRTEILEVEEFFHPGQ-----------KGSSSMPHKRNP 274
++ +SI V HL R E FF+ G+ GSS MP K+NP
Sbjct: 238 LLSDASISMV-----HLSR--FAEDLIFFNSGEAGFVELSDRVTSGSSLMPQKKNP 286
>gnl|CDD|180516 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 33.6 bits (78), Expect = 0.098
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 81 AEIIGPDA-RFIH-------QGMTSSDILDTCF 105
A IIGPDA IH QG+T D+L F
Sbjct: 405 AHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPF 437
>gnl|CDD|102352 PRK06389, PRK06389, argininosuccinate lyase; Provisional.
Length = 434
Score = 31.4 bits (71), Expect = 0.49
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 232 IASSIERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLS 284
+A + R+ +I I+ + + F GSS MP+KRNP E G++
Sbjct: 240 LAVDLSRICQDIIIYYENGIITIPDEF---TTGSSLMPNKRNPDYLELFQGIA 289
>gnl|CDD|129374 TIGR00273, TIGR00273, iron-sulfur cluster-binding protein. Members
of this family have a perfect 4Fe-4S binding motif
C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or
imperfect (the first Cys replaced by Ser) second copy.
Members probably bind two 4fe-4S iron-sulfur clusters.
Length = 432
Score = 30.2 bits (68), Expect = 0.96
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 31/141 (21%)
Query: 273 NPILTENLTGLSRLIRSHVIPAMENVALWHE-RDISHSSVERVIGPDATIHLDFALNRLK 331
+ IL E L +R++ +E + W E R++ +LK
Sbjct: 3 DGILREALRNAQERLRANRKLLVEELGYWEEWRELVKEI------------------KLK 44
Query: 332 NVIEELVVYPENMKDNLEQLKGLIHSQRILLALTQAGVSREEAYQLVQR-NAMKVWKNGA 390
V+E L Y + +K+N+ Q G ++ + A +R+ ++ Q N KV K+ +
Sbjct: 45 -VLENLDFYLDQLKENVTQRGGHVYYAK------TAEEARKIIGKVAQEKNGKKVVKSKS 97
Query: 391 IFLDVLLADVDIRKVLSEKEI 411
+ + ++ + +VL + I
Sbjct: 98 MVSE----EIGLNEVLEKIGI 114
>gnl|CDD|178060 PLN02441, PLN02441, cytokinin dehydrogenase.
Length = 525
Score = 29.9 bits (68), Expect = 1.5
Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 178 IAVCAISGSVGTFSNIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSV-LGVI-ASS 235
+ + +++ SVG S+ + + ++ L DP+S+ ++D + S+ V+ SS
Sbjct: 14 LFLSSLTSSVGLCSSPSSLLPKLLSLDGHLSFDPVSTASASKDFGNLVHSLPAAVLYPSS 73
Query: 236 IERVATEIRH 245
+E +A+ +R
Sbjct: 74 VEDIASLVRA 83
>gnl|CDD|181377 PRK08312, PRK08312, putative indolepyruvate oxidoreductase subunit
B; Reviewed.
Length = 510
Score = 29.6 bits (67), Expect = 1.8
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 233 ASSIERVATEIRHLQRTEILEVEEFFHPG 261
AS ERV E+ + +I++V EF HP
Sbjct: 324 ASRFERVRDEVG-AKPGQIVQVTEFMHPR 351
>gnl|CDD|169386 PRK08334, PRK08334, translation initiation factor IF-2B subunit
beta; Validated.
Length = 356
Score = 28.8 bits (64), Expect = 3.0
Identities = 15/42 (35%), Positives = 29/42 (69%), Gaps = 8/42 (19%)
Query: 321 IHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLI--HSQRI 360
++L +ALNR+K ++E E+++D L+++K LI +Q+I
Sbjct: 104 VNLFWALNRIKKLVE------EHLEDPLDEIKRLIVEEAQKI 139
>gnl|CDD|180726 PRK06846, PRK06846, putative deaminase; Validated.
Length = 410
Score = 28.8 bits (65), Expect = 3.2
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 32/106 (30%)
Query: 307 SHSSVERVIGPDATIHLDFALNRLKNVIE-ELVVYPENMKDNLEQLKGLIHSQRILLALT 365
SH +++ VIG +L AL R K+ E+V +P++ GL+ S
Sbjct: 133 SHCNIDPVIGLKNLENLQAALERYKDGFTYEIVAFPQH---------GLLRSN------- 176
Query: 366 QAGVSREEAYQLVQRNAMKVWKNGAIF---LDVLLADVDIRKVLSE 408
+ L+ R AM K GA +D D I K L
Sbjct: 177 --------SEPLM-REAM---KMGAHLVGGVDPASVDGAIEKSLDT 210
>gnl|CDD|107070 PHA01757, PHA01757, hypothetical protein.
Length = 98
Score = 27.3 bits (60), Expect = 8.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 28 AHACDALAKLGVIPEKSSKNIWEKGRNAVFNVDRIMELDSIIK 70
A A D ++K V+ +S K+ G NA+ N+D + +++ + +
Sbjct: 43 AKAIDQMSKSTVVATESIKDTTVTGINALLNMDTLRDVNDLAR 85
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.135 0.391
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,175,142
Number of extensions: 473913
Number of successful extensions: 1076
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1037
Number of HSP's successfully gapped: 46
Length of query: 435
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 339
Effective length of database: 3,920,105
Effective search space: 1328915595
Effective search space used: 1328915595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)