RPSBLAST alignment of GI: 254780974 and protein with PDBid: 1q5n

 Score =  298 bits (764), Expect = 1e-81
 Identities = 104/439 (23%), Positives = 197/439 (44%), Gaps = 9/439 (2%)

Query: 3   PRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAV--FNVD 60
             + +  +T ++S         E E     A A++GVIP+ ++  I    + A+   + D
Sbjct: 10  SLFYQRDVTEIFSDRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAIDKIDFD 69

Query: 61  RIMELDSIIKHDVIAFLTHLAEIIG----PDARFIHQGMTSSDILDTCFSIQLMRSTDIL 116
            +     +  +  I F+  L  I+       AR++H G TS DILDT   +Q   +  I+
Sbjct: 70  ALATATGLAGNIAIPFVKQLTAIVKDADEDAARYVHWGATSQDILDTACILQCRDALAIV 129

Query: 117 LEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTARE 176
              + Q  E+   +A  Y+  + +GR+    A P T G KLA   + F R   R+   + 
Sbjct: 130 QNQVQQCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKA 189

Query: 177 EIAVCAISGSVGTFSNIHPYVEQHVADAMGLKT--DPISSQVIARDRHAMYFSVLGVIAS 234
            + V  + G+VG+ +++       V              +    RDR     SVLG+I  
Sbjct: 190 RVLVAQLGGAVGSLASLQDQGSIVVEAYAKQLKLGQTACTWHGERDRIVEIASVLGIITG 249

Query: 235 SIERVATEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPA 294
           ++ ++A +   + +TEI EV E    G+ GSS+MPHKRNP+   ++   +  + + +   
Sbjct: 250 NVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSI 309

Query: 295 MENVALWHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGL 354
            +++   HER +     E +  P+       AL R  +V++ + V  ENM  N+E   GL
Sbjct: 310 YQSMVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGL 369

Query: 355 IHSQRILLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDK 414
           I ++ +++AL    + R  A+ +V+              D++    ++++  +  ++ + 
Sbjct: 370 IMAEAVMMALAP-HMGRLNAHHVVEAACKTAVAEQKHLKDIISQVDEVKQYFNPSQLDEI 428

Query: 415 FDYKYHTKHVNAIFERVFQ 433
           F  + +  ++    + V Q
Sbjct: 429 FKPESYLGNIQDQIDAVLQ 447