BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase
[Candidatus Liberibacter asiaticus str. psy62]
(435 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 435
Score = 899 bits (2323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/435 (100%), Positives = 435/435 (100%)
Query: 1 MIPRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVD 60
MIPRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVD
Sbjct: 1 MIPRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNIWEKGRNAVFNVD 60
Query: 61 RIMELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDI 120
RIMELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDI
Sbjct: 61 RIMELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQLMRSTDILLEDI 120
Query: 121 DQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAV 180
DQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAV
Sbjct: 121 DQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEFSRSRKRLLTAREEIAV 180
Query: 181 CAISGSVGTFSNIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVA 240
CAISGSVGTFSNIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVA
Sbjct: 181 CAISGSVGTFSNIHPYVEQHVADAMGLKTDPISSQVIARDRHAMYFSVLGVIASSIERVA 240
Query: 241 TEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVAL 300
TEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVAL
Sbjct: 241 TEIRHLQRTEILEVEEFFHPGQKGSSSMPHKRNPILTENLTGLSRLIRSHVIPAMENVAL 300
Query: 301 WHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRI 360
WHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRI
Sbjct: 301 WHERDISHSSVERVIGPDATIHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRI 360
Query: 361 LLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYH 420
LLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYH
Sbjct: 361 LLALTQAGVSREEAYQLVQRNAMKVWKNGAIFLDVLLADVDIRKVLSEKEICDKFDYKYH 420
Query: 421 TKHVNAIFERVFQMF 435
TKHVNAIFERVFQMF
Sbjct: 421 TKHVNAIFERVFQMF 435
>gi|254780370|ref|YP_003064783.1| argininosuccinate lyase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 473
Score = 55.5 bits (132), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 147/358 (41%), Gaps = 32/358 (8%)
Query: 34 LAKLGVIPEKSSKNIWEKGR-------NAVFNVDRIMELDSIIKHDVIAFLTHLAEIIGP 86
LAK G+I + ++ I E + + F R +E I ++ A LT L IG
Sbjct: 54 LAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLE---DIHMNIEARLTSL---IGS 107
Query: 87 DARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGI 146
A +H + +D + + + T + D+ +LL L +A E+ +T+ G +H
Sbjct: 108 IAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQ 167
Query: 147 HAEPTTFGLKLAMAYAE-FSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAM 205
A+P TFG MAY E F R R + E + C + G+ P A +
Sbjct: 168 TAQPVTFG-HHCMAYVEMFGRDISRFFDSIERLDECPL-GAAALAGTSFPIDRHFTAKEL 225
Query: 206 GLKTDPISS--QVIARDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEVEEFFHPGQK 263
G + +S V RD S + A + R+A EI L T
Sbjct: 226 GFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEII-LWSTPQFNFVRLSDAFST 284
Query: 264 GSSSMPHKRNPILTENLTGLSRLIRS---HVIPAMENVALWHERDISHSSVERVIGPDAT 320
GSS MP KRNP E + + I ++ M+ + L + +D+ E V DA
Sbjct: 285 GSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDK-EPVF--DAL 341
Query: 321 IHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLA---LTQAGVSREEAY 375
L + + +IE+L V KD L++ HS LA ++ AG+ EA+
Sbjct: 342 ETLQIIILAISAMIEDLTVN----KDRLQEAATKSHSTATDLADWLVSHAGLPFREAH 395
>gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62]
Length = 463
Score = 55.1 bits (131), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 103/246 (41%), Gaps = 16/246 (6%)
Query: 48 IWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHLAEIIGPDARFIHQGM--TSSDILDTCF 105
+W+ G N M ++ +I + I L + P H + +S+D T
Sbjct: 93 VWQTGSGTQSN----MNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAI 148
Query: 106 SIQLM-RSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEF 164
I R LL + L +L K+ +++D + IGR+H A P T G + + +
Sbjct: 149 HIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQV 208
Query: 165 SRSRKRLLTAREEIAVCAISGS-VGTFSN----IHPYVEQHVADAMGLK--TDPISSQVI 217
S KR+ + + A G+ VGT N V Q++ D GL T P + +
Sbjct: 209 KNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEAL 268
Query: 218 A-RDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEVEEFFHP-GQKGSSSMPHKRNPI 275
A D A + A+++ ++A +IR L + E P + GSS MP K NP
Sbjct: 269 ACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPT 328
Query: 276 LTENLT 281
E +T
Sbjct: 329 QCEAIT 334
>gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 245
Score = 27.7 bits (60), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 3 PRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNI---WEKGRNAVFNV 59
P +R T T ++++ + R + A CD L + P + + + W+ VF
Sbjct: 111 PVITRYTQNTHYNMD-RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD 169
Query: 60 DRIMELDSIIKHDVIAFLTHLAEIIGPDARF 90
+ +S+ K IA + ++A +IGP+ +
Sbjct: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
>gi|254780758|ref|YP_003065171.1| hypothetical protein CLIBASIA_03225 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 216
Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 102 DTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHG 145
DT F + R TDIL D QL+ S+ + D ++ HG
Sbjct: 155 DTLFRSSIGR-TDILHGDYQQLINSINNKILPLGDEISFVCGHG 197
>gi|254780588|ref|YP_003065001.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
[Candidatus Liberibacter asiaticus str. psy62]
Length = 317
Score = 25.0 bits (53), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 61 RIMELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQL 109
R+ME+ K VI+F+ G DA QG + + C +Q+
Sbjct: 142 RLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQV 190
>gi|254780653|ref|YP_003065066.1| phosphoglycerate kinase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 400
Score = 24.3 bits (51), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 205 MGLKTDPISSQVIARDRHAMYFSVLGVIA-SSIERVATEIRH 245
+G KT QVIA+ R M+ LGV +R E+ H
Sbjct: 297 VGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAH 338
>gi|254781064|ref|YP_003065477.1| FeS assembly scaffold SufA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 116
Score = 23.5 bits (49), Expect = 7.0, Method: Composition-based stats.
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 377 LVQRNAMKVWKNGAIFLDVLLADVDIR 403
L++++ +KVW + A L +L ++D +
Sbjct: 58 LIEKDGVKVWIDSASLLYMLGTEIDFK 84
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 268,783
Number of Sequences: 1233
Number of extensions: 10760
Number of successful extensions: 42
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 9
length of query: 435
length of database: 328,796
effective HSP length: 77
effective length of query: 358
effective length of database: 233,855
effective search space: 83720090
effective search space used: 83720090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 40 (20.0 bits)