HHsearch alignment for GI: 254780975 and conserved domain: COG0352

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism].
Probab=98.72  E-value=2.3e-06  Score=61.00  Aligned_cols=183  Identities=17%  Similarity=0.191  Sum_probs=128.1

Q ss_pred             HHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCH
Q ss_conf             99999999659989999734263458434178999986412564168567885120336764047760799970664215
Q gi|254780975|r   20 GEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHI   99 (224)
Q Consensus        20 ~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~   99 (224)
T Consensus        24 ~~~ve~al~~Gv~~vQlR~K~~~~~~---~-~~~a~~~~~lc-~~~~v~liINd~~dlA~---~~~AdGV--HlGq~D~~   93 (211)
T COG0352          24 LEWVEAALKGGVTAVQLREKDLSDEE---Y-LALAEKLRALC-QKYGVPLIINDRVDLAL---AVGADGV--HLGQDDMP   93 (211)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCCHHH---H-HHHHHHHHHHH-HHHCCEEEECCCHHHHH---HCCCCEE--EECCCCCC
T ss_conf             99999999679949998028987499---9-99999999999-98198099668399997---6799889--70876545


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             899986776498259985233344789988620-1402899830677653322013577899865431386526981589
Q gi|254780975|r  100 RRSLRTIHAMGKKTGVAINPETPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV  178 (224)
Q Consensus       100 ~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv  178 (224)
T Consensus        94 ~~~ar~~~~~~~iIG~S~h---~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~---iP~vAIGGi  167 (211)
T COG0352          94 LAEARELLGPGLIIGLSTH---DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVN---IPVVAIGGI  167 (211)
T ss_pred             HHHHHHHCCCCCEEEEECC---CHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCC---CCEEEECCC
T ss_conf             5889974199978983049---9999999876399999988867889998877467899999998279---998998488


Q ss_pred             CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             9889999996799899974266378998999999999999
Q gi|254780975|r  179 TSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK  218 (224)
Q Consensus       179 n~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~  218 (224)
T Consensus       168 ~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~  207 (211)
T COG0352         168 NLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALE  207 (211)
T ss_pred             CHHHHHHHHHHCCCEEEEHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             9999999998298769726686607988999999999987