HHsearch alignment for GI: 254780975 and conserved domain: PRK13125
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional.
Probab=98.82 E-value=1.7e-06 Score=61.76 Aligned_cols=211 Identities=15% Similarity=0.266 Sum_probs=143.7
Q ss_pred CCCCEEECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEECC---------CCCCCHHHHHHHHHCCCC
Q ss_conf 97981881706325--889999999999965998999973------4263458---------434178999986412564
Q gi|254780975|r 1 MTPSIQIVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFVP---------NISFGADVIRSLRSYSDS 63 (224)
Q Consensus 1 M~k~~~IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fvp---------n~~~~~~~i~~i~~~t~~ 63 (224)
T Consensus 2 ~~r~-ali~yitaG~P~~e~s~~~l~~l~~~-aDiiElGiPfSDPvADGpvIq~A~~~Al~~g~~~-~~i~~~~r~~~~~ 78 (247)
T PRK13125 2 ISRP-GLGVYLTAGWPNAETFLEAIDGLVGL-VDFLELGIPPKNPKYDGPVIRKAHREVSYWGLDY-WSLLEEVRKKVGV 78 (247)
T ss_pred CCCC-EEEEEEECCCCCHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCH-HHHHHHHCCCCCC
T ss_conf 9886-58888718379989999999998647-9999979988987666099999999998769989-9999985056899
Q ss_pred EEEEEEEEE-E-----CCHHHHHHCCCCCCEEEEE---CCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC
Q ss_conf 168567885-1-----2033676404776079997---066421589998677649825998523334478998862014
Q gi|254780975|r 64 VFDCHLMIS-S-----IDSHINIIADAGCDIITFH---PESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID 134 (224)
Q Consensus 64 ~~dvHLMv~-~-----P~~~i~~~~~~g~d~i~~H---~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D 134 (224)
T Consensus 79 pivl--M~Y~N~~~~g~e~F~~~~~~~GvdGvIipDLP~e~~ee~~~~~~~~~~~gl~~I~lvsPtt~~~ri~~i~~~s~ 156 (247)
T PRK13125 79 PTYI--MTYLEDYVGSLDDLLNTAKEVGARGVLFPDLLIDFPDELEKYVELIRRYGLAPVFFTSPKFPDRLIRRLSKLSP 156 (247)
T ss_pred CEEE--HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 8897--29889999769999999998599758833888754678999999999769846999579981999999998689
Q ss_pred EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHC---CCCHHHHH
Q ss_conf 028998306776533220135778998654313865269815899-88999999679989997426637---89989999
Q gi|254780975|r 135 MILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFN---QKGEISYA 210 (224)
Q Consensus 135 ~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~---~~d~~~~~ 210 (224)
T Consensus 157 gFvY~~~~g-vTG~~~~~~~~~~i~~ik~~~~--~~Pv~vGFGI~t~e~v~~~~~~~aDGvIVGSaiVk~i~~~~~~~~~ 233 (247)
T PRK13125 157 LFIYLGLYP-ATGVELPVYVERNIKRVRELVG--DVYLVAGFAIDSPEDAAKALSAGADGVVVGTAFIRRLERNGVEEAL 233 (247)
T ss_pred CEEEEEEEC-CCCCCCCCCHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHH
T ss_conf 779999443-6788773259999999998569--9985883287999999999855899999878999999976989999
Q ss_pred HHHHHHHHH
Q ss_conf 999999997
Q gi|254780975|r 211 KRLNDLKKS 219 (224)
Q Consensus 211 ~~l~~l~~~ 219 (224)
T Consensus 234 ~~v~~l~~a 242 (247)
T PRK13125 234 SLLKEIRGA 242 (247)
T ss_pred HHHHHHHHH
T ss_conf 999999999