HHsearch alignment for GI: 254780975 and conserved domain: TIGR00007
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=97.99 E-value=0.0018 Score=42.56 Aligned_cols=176 Identities=14% Similarity=0.188 Sum_probs=123.8
Q ss_pred HHHHHHHHH-CCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 999999996-5998999973426345843417899998641256416856788512033676404776079997066421
Q gi|254780975|r 20 GEEISNITK-AGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPH 98 (224)
Q Consensus 20 ~~~i~~l~~-~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~ 98 (224)
T Consensus 31 ~~~A~~~~~~~GA~~iHvVDLDGA~~g~~~-N~~~i~~I~~~~~~~vQvGG-GIRs~e~v~~ll~~Gv~RVI~GT~A~~~ 108 (241)
T TIGR00007 31 VEAAKKWEEFQGAKRIHVVDLDGALEGGPV-NLEVIKKIVEELGVPVQVGG-GIRSLEDVEKLLDLGVDRVIIGTAAVEN 108 (241)
T ss_pred HHHHHHHHHCCCCCEEEEEECCHHHCCCCC-HHHHHHHHHHHCCCCEEECC-CCCCHHHHHHHHHCCCCEEEEEEEEECC
T ss_conf 999999984169715999845100068620-07899999986185179817-5168899999997398579973322108
Q ss_pred HHHHHHHHHHCC-CEEEEEEE--------------------CCCCHHHHHHHHHHCC-EEEEEE--EE-CCCCCCCCCCH
Q ss_conf 589998677649-82599852--------------------3334478998862014-028998--30-67765332201
Q gi|254780975|r 99 IRRSLRTIHAMG-KKTGVAIN--------------------PETPVAILEDVIDEID-MILIMT--VN-PGFGGQQLIES 153 (224)
Q Consensus 99 ~~~~i~~i~~~g-~k~Giai~--------------------p~T~~~~i~~~l~~~D-~vliM~--V~-PG~~Gq~f~~~ 153 (224)
T Consensus 109 ~~~v~~~~~~~g~~~i~V~lD~~~g~~G~~~V~v~GW~E~s~~~~~~~~~~~~~-~G~~~~ii~TdI~~DGtl-~G~n~~ 186 (241)
T TIGR00007 109 PDLVKELLKEYGPERIVVSLDARDGEEGVKEVAVKGWKEKSEVSLEELAKRLEE-LGELEGIIYTDISRDGTL-SGPNFE 186 (241)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCHHHHHHHHHH-CCCCCEEEEEEEECCCCE-ECCCCC
T ss_conf 699999999848996599986314887517888740411356279999999851-586336899752006720-078732
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHH--CCCCEEEECHHHHCCC
Q ss_conf 35778998654313865269815899-889999996--7998999742663789
Q gi|254780975|r 154 TIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQ--AGADLLVVGSSFFNQK 204 (224)
Q Consensus 154 ~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~--~Gad~~V~Gsaif~~~ 204 (224)
T Consensus 187 ~~---~~~~~~~--~~~~viaSGGv~s~~D~~~L~~~~~G~~GvIvGkALY~g~ 235 (241)
T TIGR00007 187 LT---KELVKAL--VNVPVIASGGVSSIDDLRALKEIELGVYGVIVGKALYEGK 235 (241)
T ss_pred HH---HHHHHHH--CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
T ss_conf 88---9999873--5841899426578899999997159832799862111688