HHsearch alignment for GI: 254780975 and conserved domain: TIGR00007

>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=97.49  E-value=0.00033  Score=47.16  Aligned_cols=90  Identities=17%  Similarity=0.379  Sum_probs=64.7

Q ss_pred             CCCCHHHHHHHHH-H-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEE
Q ss_conf             3334478998862-0-14028998306776533220135778998654313865269815899-8899999967998999
Q gi|254780975|r  119 PETPVAILEDVID-E-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLV  195 (224)
Q Consensus       119 p~T~~~~i~~~l~-~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V  195 (224)
T Consensus        27 ~d~P~~~A~~~~~~~GA~~iHvVDLDGA~~g~~~N~~~i~~I~~------~~~~~vQvGGGIRs~e~v~~ll~~Gv~RVI  100 (241)
T TIGR00007        27 SDDPVEAAKKWEEFQGAKRIHVVDLDGALEGGPVNLEVIKKIVE------ELGVPVQVGGGIRSLEDVEKLLDLGVDRVI  100 (241)
T ss_pred             ECCHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCHHHHHHHHHH------HCCCCEEECCCCCCHHHHHHHHHCCCCEEE
T ss_conf             08989999999841697159998451000686200789999998------618517981751688999999973985799


Q ss_pred             ECHHHHCCCCHHHHHHHHHHH
Q ss_conf             742663789989999999999
Q gi|254780975|r  196 VGSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       196 ~Gsaif~~~d~~~~~~~l~~l  216 (224)
T Consensus       101 ~GT~A~~~~~~v--~~~~~~~  119 (241)
T TIGR00007       101 IGTAAVENPDLV--KELLKEY  119 (241)
T ss_pred             EEEEEECCHHHH--HHHHHHH
T ss_conf             733221086999--9999984