HHsearch alignment for GI: 254780975 and conserved domain: TIGR00007
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=97.49 E-value=0.00033 Score=47.16 Aligned_cols=90 Identities=17% Similarity=0.379 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHH-H-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEE
Q ss_conf 3334478998862-0-14028998306776533220135778998654313865269815899-8899999967998999
Q gi|254780975|r 119 PETPVAILEDVID-E-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLV 195 (224)
Q Consensus 119 p~T~~~~i~~~l~-~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V 195 (224)
T Consensus 27 ~d~P~~~A~~~~~~~GA~~iHvVDLDGA~~g~~~N~~~i~~I~~------~~~~~vQvGGGIRs~e~v~~ll~~Gv~RVI 100 (241)
T TIGR00007 27 SDDPVEAAKKWEEFQGAKRIHVVDLDGALEGGPVNLEVIKKIVE------ELGVPVQVGGGIRSLEDVEKLLDLGVDRVI 100 (241)
T ss_pred ECCHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCHHHHHHHHHH------HCCCCEEECCCCCCHHHHHHHHHCCCCEEE
T ss_conf 08989999999841697159998451000686200789999998------618517981751688999999973985799
Q ss_pred ECHHHHCCCCHHHHHHHHHHH
Q ss_conf 742663789989999999999
Q gi|254780975|r 196 VGSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 196 ~Gsaif~~~d~~~~~~~l~~l 216 (224)
T Consensus 101 ~GT~A~~~~~~v--~~~~~~~ 119 (241)
T TIGR00007 101 IGTAAVENPDLV--KELLKEY 119 (241)
T ss_pred EEEEEECCHHHH--HHHHHHH
T ss_conf 733221086999--9999984