HHsearch alignment for GI: 254780975 and conserved domain: TIGR01768
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205 This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=95.71 E-value=0.037 Score=34.10 Aligned_cols=187 Identities=16% Similarity=0.214 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCC--HHHHHHHHHCCCCEEEEEEEEEECCHH--------HHHHCCC-C
Q ss_conf 9999999999965998999973426345843417--899998641256416856788512033--------6764047-7
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG--ADVIRSLRSYSDSVFDCHLMISSIDSH--------INIIADA-G 85 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~--~~~i~~i~~~t~~~~dvHLMv~~P~~~--------i~~~~~~-g 85 (224)
T Consensus 14 ~e~~eI~~a~~~~GTDail~GGs~g-----Vt~~~~~~~~~~~~e~~~~P~il--fPsn~~~~s~~~Da~f~~svlNS~~ 86 (242)
T TIGR01768 14 EEADEIAKAAAESGTDAILVGGSQG-----VTLDKLDQLIEALRERYGVPIIL--FPSNLTNVSRKADALFFPSVLNSDD 86 (242)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCCC-----CCHHHHHHHHHHHHHCCCCCEEE--ECCCCCCHHHCCCEEEEEEEEECCC
T ss_conf 6368999999835898898227787-----03688999999997405983798--4188742111067687711431699
Q ss_pred CCEEEE--------ECCCCCCHHHHHHH---------HHHCCCEEEEEEECCC-CH--HHHHHHHHHCCEEEEEE---EE
Q ss_conf 607999--------70664215899986---------7764982599852333-44--78998862014028998---30
Q gi|254780975|r 86 CDIITF--------HPESSPHIRRSLRT---------IHAMGKKTGVAINPET-PV--AILEDVIDEIDMILIMT---VN 142 (224)
Q Consensus 86 ~d~i~~--------H~E~~~~~~~~i~~---------i~~~g~k~Giai~p~T-~~--~~i~~~l~~~D~vliM~---V~ 142 (224)
T Consensus 87 ~~wI~GkhaqWvr~q~~~~~~~~~~~~~~E~~~~gY~iv~pgg~aa~v~~A~~~P~~k~~~Aa~~~~a~~~~g~~~~YLE 166 (242)
T TIGR01768 87 PYWIIGKHAQWVRAQILAAPKFKKLGESLEIIPEGYIIVNPGGAAATVTKAKPIPYDKEDLAAYAALAEEMLGMPIIYLE 166 (242)
T ss_pred CCEEECCHHHHHHHHHHHHHHHHHHHHHHEEHHEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 76453425999999998789887653134001211278758995588502357887768799999999998099689996
Q ss_pred C-CCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHH
Q ss_conf 6-77653322013577899865431-3865269815899-8899999967998999742663789989999
Q gi|254780975|r 143 P-GFGGQQLIESTIPKIRQAKALIG-KRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYA 210 (224)
Q Consensus 143 P-G~~Gq~f~~~~l~kI~~l~~~~~-~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~ 210 (224)
T Consensus 167 agsgap~pvpPE~va~vk~v~~~aGyGGe~~L~vGGGIRs~E~A~~~a~AgAD~~VtGnvie~~~nv~~k~ 237 (242)
T TIGR01768 167 AGSGAPEPVPPELVAEVKKVLDKAGYGGEVKLIVGGGIRSVEKARKLAEAGADVVVTGNVIEEDDNVVDKA 237 (242)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEECCHHHHHHH
T ss_conf 37875479745899999987410478863257840764788999999534598999846875163789999