HHsearch alignment for GI: 254780975 and conserved domain: cd00311
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=96.43 E-value=0.084 Score=31.82 Aligned_cols=126 Identities=16% Similarity=0.309 Sum_probs=82.9
Q ss_pred HHHHCCCCCCEEEE-EC-------CCCCCHHHHHHHHHHCCCEEEEEEECCC-------CH----HHHHHHHHHCCE--E
Q ss_conf 67640477607999-70-------6642158999867764982599852333-------44----789988620140--2
Q gi|254780975|r 78 INIIADAGCDIITF-HP-------ESSPHIRRSLRTIHAMGKKTGVAINPET-------PV----AILEDVIDEIDM--I 136 (224)
Q Consensus 78 i~~~~~~g~d~i~~-H~-------E~~~~~~~~i~~i~~~g~k~Giai~p~T-------~~----~~i~~~l~~~D~--v 136 (224)
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~~~Et~~~i~~K~~~a~~~~l~pI~CiGE~~~~~~~~~~~~~l~~Ql~~~l~~~~~~~~ 156 (242)
T cd00311 77 AEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAP 156 (242)
T ss_pred HHHHHHCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHCCCHHCC
T ss_conf 99999759998997558989881998799999999999879927999366066554043999999999999847101036
Q ss_pred EEEEEEC----CCCCCCCCCH-HHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHCC-CCEEEECHHHHCCC
Q ss_conf 8998306----7765332201-35778998654313------86526981589988999999679-98999742663789
Q gi|254780975|r 137 LIMTVNP----GFGGQQLIES-TIPKIRQAKALIGK------RSISLEVDGGVTSRNIKSLVQAG-ADLLVVGSSFFNQK 204 (224)
Q Consensus 137 liM~V~P----G~~Gq~f~~~-~l~kI~~l~~~~~~------~~~~I~vDGGvn~~~i~~l~~~G-ad~~V~Gsaif~~~ 204 (224)
T Consensus 157 ~iIAYEPvWAIG-tG~~as~~~i~ev~~~Ir~~l~~~~~~~~~~v~iLYGGSV~~~N~~~i~~~~~vdG~LvG~ASl~~~ 235 (242)
T cd00311 157 VVIAYEPVWAIG-TGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAE 235 (242)
T ss_pred EEEEECCHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHH
T ss_conf 099977688618-9999999999999999999999862020367548960778988999995689999788535767888