HHsearch alignment for GI: 254780975 and conserved domain: cd00311

>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=96.43  E-value=0.084  Score=31.82  Aligned_cols=126  Identities=16%  Similarity=0.309  Sum_probs=82.9

Q ss_pred             HHHHCCCCCCEEEE-EC-------CCCCCHHHHHHHHHHCCCEEEEEEECCC-------CH----HHHHHHHHHCCE--E
Q ss_conf             67640477607999-70-------6642158999867764982599852333-------44----789988620140--2
Q gi|254780975|r   78 INIIADAGCDIITF-HP-------ESSPHIRRSLRTIHAMGKKTGVAINPET-------PV----AILEDVIDEIDM--I  136 (224)
Q Consensus        78 i~~~~~~g~d~i~~-H~-------E~~~~~~~~i~~i~~~g~k~Giai~p~T-------~~----~~i~~~l~~~D~--v  136 (224)
T Consensus        77 ~~mL~d~G~~~viiGHSERR~~~~Et~~~i~~K~~~a~~~~l~pI~CiGE~~~~~~~~~~~~~l~~Ql~~~l~~~~~~~~  156 (242)
T cd00311          77 AEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAP  156 (242)
T ss_pred             HHHHHHCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHCCCHHCC
T ss_conf             99999759998997558989881998799999999999879927999366066554043999999999999847101036


Q ss_pred             EEEEEEC----CCCCCCCCCH-HHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHCC-CCEEEECHHHHCCC
Q ss_conf             8998306----7765332201-35778998654313------86526981589988999999679-98999742663789
Q gi|254780975|r  137 LIMTVNP----GFGGQQLIES-TIPKIRQAKALIGK------RSISLEVDGGVTSRNIKSLVQAG-ADLLVVGSSFFNQK  204 (224)
Q Consensus       137 liM~V~P----G~~Gq~f~~~-~l~kI~~l~~~~~~------~~~~I~vDGGvn~~~i~~l~~~G-ad~~V~Gsaif~~~  204 (224)
T Consensus       157 ~iIAYEPvWAIG-tG~~as~~~i~ev~~~Ir~~l~~~~~~~~~~v~iLYGGSV~~~N~~~i~~~~~vdG~LvG~ASl~~~  235 (242)
T cd00311         157 VVIAYEPVWAIG-TGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAE  235 (242)
T ss_pred             EEEEECCHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHH
T ss_conf             099977688618-9999999999999999999999862020367548960778988999995689999788535767888