HHsearch alignment for GI: 254780975 and conserved domain: cd02808
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=90.91 E-value=1.4 Score=24.08 Aligned_cols=106 Identities=19% Similarity=0.295 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHCC--CEEEEEEECCCCHHHHHHHHHH--CCEEEEEEEECCCCC--CCCCCH----HHHHHHHHHHHH
Q ss_conf 421589998677649--8259985233344789988620--140289983067765--332201----357789986543
Q gi|254780975|r 96 SPHIRRSLRTIHAMG--KKTGVAINPETPVAILEDVIDE--IDMILIMTVNPGFGG--QQLIES----TIPKIRQAKALI 165 (224)
Q Consensus 96 ~~~~~~~i~~i~~~g--~k~Giai~p~T~~~~i~~~l~~--~D~vliM~V~PG~~G--q~f~~~----~l~kI~~l~~~~ 165 (224)
T Consensus 198 ~edl~~~I~~LR~~~~~kpVgvKl~~g~~~~~l~~~~~~~~~DfItIDG~eGGTGAaP~~~~d~~GlP~~~~l~~~~~~L 277 (392)
T cd02808 198 IEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQAL 277 (392)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999999972899807999688898899999999647999996079987541429999749973899999999999
Q ss_pred HC----CCCEEEEECCCC-HHHHHHHHHCCCCEEEECHH-HH
Q ss_conf 13----865269815899-88999999679989997426-63
Q gi|254780975|r 166 GK----RSISLEVDGGVT-SRNIKSLVQAGADLLVVGSS-FF 201 (224)
Q Consensus 166 ~~----~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsa-if 201 (224)
T Consensus 278 ~~~glr~~i~liasGgl~t~~di~kalaLGAD~v~~a~~~m~ 319 (392)
T cd02808 278 VKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALI 319 (392)
T ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHCHHHHH
T ss_conf 976996763799638857478999999867564510569999