HHsearch alignment for GI: 254780975 and conserved domain: cd04727
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=94.63 E-value=0.14 Score=30.34 Aligned_cols=61 Identities=25% Similarity=0.392 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
Q ss_conf 3577899865431386526981589-9889999996799899974266378998999999999
Q gi|254780975|r 154 TIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLND 215 (224)
Q Consensus 154 ~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~ 215 (224)
T Consensus 182 p~elv~~v~~~-grLPVvnFaAGGiATPADAALmMqLG~dGVFVGSGIFKS~dP~krA~AIV~ 243 (283)
T cd04727 182 PYELVKETAKL-GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVE 243 (283)
T ss_pred CHHHHHHHHHH-CCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 58999999997-897636642678588377999997289878877654578999999999999