HHsearch alignment for GI: 254780975 and conserved domain: cd04729

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.13  E-value=0.00019  Score=48.80  Aligned_cols=166  Identities=19%  Similarity=0.306  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEE---------EEEEEECCHHHHHHCCCCCC
Q ss_conf             999999999996599899997342634584341789999864125641685---------67885120336764047760
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDC---------HLMISSIDSHINIIADAGCD   87 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dv---------HLMv~~P~~~i~~~~~~g~d   87 (224)
T Consensus        27 ~im~~mA~Aa~~gGA~giR~~------------~~~dI~aIk~~v~lPIIGi~K~~~~~s~VyITPt~~ev~~l~~aGad   94 (219)
T cd04729          27 EIMAAMALAAVQGGAVGIRAN------------GVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGAD   94 (219)
T ss_pred             HHHHHHHHHHHHCCCEEEEEC------------CHHHHHHHHHCCCCCEEEEEECCCCCCCEEECCCHHHHHHHHHCCCC
T ss_conf             899999999997896399808------------98899999832899889999568899984566889999999985999


Q ss_pred             EEEEECCCCC-----CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEE-CCCCCCCC--CCHHHHHHH
Q ss_conf             7999706642-----158999867764982599852333447899886201402899830-67765332--201357789
Q gi|254780975|r   88 IITFHPESSP-----HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVN-PGFGGQQL--IESTIPKIR  159 (224)
Q Consensus        88 ~i~~H~E~~~-----~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~-PG~~Gq~f--~~~~l~kI~  159 (224)
T Consensus        95 iIA~DaT~R~RP~g~~l~~~i~~i~~~~-~~l~MAD~st~ee~~~A~~~G~D~v---gTTL~GYT~~t~~~~~PD~~lv~  170 (219)
T cd04729          95 IIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALNAAKLGFDII---GTTLSGYTEETAKTEDPDFELLK  170 (219)
T ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHH-CCEEEEECCCHHHHHHHHHCCCCEE---ECCCCCCCCCCCCCCCCCHHHHH
T ss_conf             9999467887989978999999999986-9778875488999999998499899---70214567787889998789999


Q ss_pred             HHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHH
Q ss_conf             98654313865269815899-8899999967998999742663
Q gi|254780975|r  160 QAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFF  201 (224)
Q Consensus       160 ~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif  201 (224)
T Consensus       171 ~l~~~~---~~pvIaEGri~tPe~a~~a~~~GA~aVVVGsAIT  210 (219)
T cd04729         171 ELRKAL---GIPVIAEGRINSPEQAAKALELGADAVVVGSAIT  210 (219)
T ss_pred             HHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCC
T ss_conf             999975---9939970698999999999983998999895438