HHsearch alignment for GI: 254780975 and conserved domain: cd04729
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.13 E-value=0.00019 Score=48.80 Aligned_cols=166 Identities=19% Similarity=0.306 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEE---------EEEEEECCHHHHHHCCCCCC
Q ss_conf 999999999996599899997342634584341789999864125641685---------67885120336764047760
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDC---------HLMISSIDSHINIIADAGCD 87 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dv---------HLMv~~P~~~i~~~~~~g~d 87 (224)
T Consensus 27 ~im~~mA~Aa~~gGA~giR~~------------~~~dI~aIk~~v~lPIIGi~K~~~~~s~VyITPt~~ev~~l~~aGad 94 (219)
T cd04729 27 EIMAAMALAAVQGGAVGIRAN------------GVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGAD 94 (219)
T ss_pred HHHHHHHHHHHHCCCEEEEEC------------CHHHHHHHHHCCCCCEEEEEECCCCCCCEEECCCHHHHHHHHHCCCC
T ss_conf 899999999997896399808------------98899999832899889999568899984566889999999985999
Q ss_pred EEEEECCCCC-----CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEE-CCCCCCCC--CCHHHHHHH
Q ss_conf 7999706642-----158999867764982599852333447899886201402899830-67765332--201357789
Q gi|254780975|r 88 IITFHPESSP-----HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVN-PGFGGQQL--IESTIPKIR 159 (224)
Q Consensus 88 ~i~~H~E~~~-----~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~-PG~~Gq~f--~~~~l~kI~ 159 (224)
T Consensus 95 iIA~DaT~R~RP~g~~l~~~i~~i~~~~-~~l~MAD~st~ee~~~A~~~G~D~v---gTTL~GYT~~t~~~~~PD~~lv~ 170 (219)
T cd04729 95 IIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALNAAKLGFDII---GTTLSGYTEETAKTEDPDFELLK 170 (219)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHH-CCEEEEECCCHHHHHHHHHCCCCEE---ECCCCCCCCCCCCCCCCCHHHHH
T ss_conf 9999467887989978999999999986-9778875488999999998499899---70214567787889998789999
Q ss_pred HHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHH
Q ss_conf 98654313865269815899-8899999967998999742663
Q gi|254780975|r 160 QAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFF 201 (224)
Q Consensus 160 ~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif 201 (224)
T Consensus 171 ~l~~~~---~~pvIaEGri~tPe~a~~a~~~GA~aVVVGsAIT 210 (219)
T cd04729 171 ELRKAL---GIPVIAEGRINSPEQAAKALELGADAVVVGSAIT 210 (219)
T ss_pred HHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCC
T ss_conf 999975---9939970698999999999983998999895438