HHsearch alignment for GI: 254780975 and conserved domain: cd04736

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=90.69  E-value=1.4  Score=23.95  Aligned_cols=113  Identities=14%  Similarity=0.188  Sum_probs=61.2

Q ss_pred             HHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf             998677649825998523334478998862-0140289983067765332201357789986543138652698158998
Q gi|254780975|r  102 SLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS  180 (224)
Q Consensus       102 ~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~  180 (224)
T Consensus       227 di~wlr~~w~~p-lilKGI~~~eDA~~A~~~G~dgIiV-S-NHGGRQLD~a~~~id~Lp~I~~av---~~~V~~DgGIRr  300 (361)
T cd04736         227 DLRWLRDLWPHK-LLVKGIVTAEDAKRCIELGADGVIL-S-NHGGRQLDDAIAPIEALAEIVAAT---YKPVLIDSGIRR  300 (361)
T ss_pred             HHHHHHHHCCCC-EEEECCCCHHHHHHHHHCCCCEEEE-C-CCCCCCCCCCCCHHHHHHHHHHHH---CCEEEEECCCCC
T ss_conf             999999866997-4552148999999998769999997-5-886333577741477799999971---994999489887


Q ss_pred             -HHHHHHHHCCCCEEEECH-HHHCC-CCHHHHHHHHHHHHHHH
Q ss_conf             -899999967998999742-66378-99899999999999978
Q gi|254780975|r  181 -RNIKSLVQAGADLLVVGS-SFFNQ-KGEISYAKRLNDLKKSA  220 (224)
Q Consensus       181 -~~i~~l~~~Gad~~V~Gs-aif~~-~d~~~~~~~l~~l~~~a  220 (224)
T Consensus       301 G~DV~KALALGA~aV~iGRp~lygLaa~G~~GV~~~l~iL~~E  343 (361)
T cd04736         301 GSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEE  343 (361)
T ss_pred             HHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             8999999977999898778999987711099999999999999