HHsearch alignment for GI: 254780975 and conserved domain: cd04736
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=90.69 E-value=1.4 Score=23.95 Aligned_cols=113 Identities=14% Similarity=0.188 Sum_probs=61.2
Q ss_pred HHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf 998677649825998523334478998862-0140289983067765332201357789986543138652698158998
Q gi|254780975|r 102 SLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS 180 (224)
Q Consensus 102 ~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~ 180 (224)
T Consensus 227 di~wlr~~w~~p-lilKGI~~~eDA~~A~~~G~dgIiV-S-NHGGRQLD~a~~~id~Lp~I~~av---~~~V~~DgGIRr 300 (361)
T cd04736 227 DLRWLRDLWPHK-LLVKGIVTAEDAKRCIELGADGVIL-S-NHGGRQLDDAIAPIEALAEIVAAT---YKPVLIDSGIRR 300 (361)
T ss_pred HHHHHHHHCCCC-EEEECCCCHHHHHHHHHCCCCEEEE-C-CCCCCCCCCCCCHHHHHHHHHHHH---CCEEEEECCCCC
T ss_conf 999999866997-4552148999999998769999997-5-886333577741477799999971---994999489887
Q ss_pred -HHHHHHHHCCCCEEEECH-HHHCC-CCHHHHHHHHHHHHHHH
Q ss_conf -899999967998999742-66378-99899999999999978
Q gi|254780975|r 181 -RNIKSLVQAGADLLVVGS-SFFNQ-KGEISYAKRLNDLKKSA 220 (224)
Q Consensus 181 -~~i~~l~~~Gad~~V~Gs-aif~~-~d~~~~~~~l~~l~~~a 220 (224)
T Consensus 301 G~DV~KALALGA~aV~iGRp~lygLaa~G~~GV~~~l~iL~~E 343 (361)
T cd04736 301 GSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEE 343 (361)
T ss_pred HHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 8999999977999898778999987711099999999999999