HHsearch alignment for GI: 254780975 and conserved domain: cd04738
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=96.76 E-value=0.05 Score=33.29 Aligned_cols=194 Identities=21% Similarity=0.313 Sum_probs=120.3
Q ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEEEE------------------CCEECCCCCCC----HHHHHHHHHC--CCCEEEE
Q ss_conf 3258899999999999659989999734------------------26345843417----8999986412--5641685
Q gi|254780975|r 12 LAADFSRLGEEISNITKAGAKQIHFDVM------------------DGCFVPNISFG----ADVIRSLRSY--SDSVFDC 67 (224)
Q Consensus 12 l~~d~~~l~~~i~~l~~~~~d~iHiDIm------------------Dg~fvpn~~~~----~~~i~~i~~~--t~~~~dv 67 (224)
T Consensus 54 lAAGfDKn~~~~~~~~~lGfGfvevGTVT~~pq~GNpkPRifRl~~~~aiiN~~GfnN~G~~~~~~~L~~~~~~~~~lgv 133 (327)
T cd04738 54 LAAGFDKNAEAIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGV 133 (327)
T ss_pred ECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEECCCCCEEEHHCCCCCHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 54588988589999996698679971436888889999857974675401100458717699999999840456871799
Q ss_pred EEEEEE--C-----CHHHH---HHCCCCCCEEEEECCC-----------CCCHHHHHHHHHHCC------CEEEEEEECC
Q ss_conf 678851--2-----03367---6404776079997066-----------421589998677649------8259985233
Q gi|254780975|r 68 HLMISS--I-----DSHIN---IIADAGCDIITFHPES-----------SPHIRRSLRTIHAMG------KKTGVAINPE 120 (224)
Q Consensus 68 HLMv~~--P-----~~~i~---~~~~~g~d~i~~H~E~-----------~~~~~~~i~~i~~~g------~k~Giai~p~ 120 (224)
T Consensus 134 nIg~nk~t~~e~~~~Dy~~~~~~l~~~-aDy~~iNiSsPNt~glr~lq~~~~l~~ll~~v~~~~~~~~~~~Pi~vKlsPD 212 (327)
T cd04738 134 NIGKNKDTPLEDAVEDYVIGVRKLGPY-ADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD 212 (327)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 985047882676899999999985355-7789995468898451002688999999999999998537788669981799
Q ss_pred CCHHHHHHHHHH-----CCEEEEE-E-------------EEC-CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CC
Q ss_conf 344789988620-----1402899-8-------------306-7765332201357789986543138652698158-99
Q gi|254780975|r 121 TPVAILEDVIDE-----IDMILIM-T-------------VNP-GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGG-VT 179 (224)
Q Consensus 121 T~~~~i~~~l~~-----~D~vliM-~-------------V~P-G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGG-vn 179 (224)
T Consensus 213 ~~~~~i~~i~~~~~~~g~dGvi~tNTt~~r~~~~~~~~~~~~GGlSG~pl~~~s~~~v~~v~~~~~~-~~pIIgvGGI~s 291 (327)
T cd04738 213 LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGG-KIPIIGVGGISS 291 (327)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCEEEECCCCC
T ss_conf 7667899999999973997899958855542124565556668636406789999999999997499-981999889799
Q ss_pred HHHHHHHHHCCCCEEEECHH-HHCCCCHH
Q ss_conf 88999999679989997426-63789989
Q gi|254780975|r 180 SRNIKSLVQAGADLLVVGSS-FFNQKGEI 207 (224)
Q Consensus 180 ~~~i~~l~~~Gad~~V~Gsa-if~~~d~~ 207 (224)
T Consensus 292 ~~Da~e~i~aGAslVQiyT~liy~GP~li 320 (327)
T cd04738 292 GEDAYEKIRAGASLVQLYTGLVYEGPGLV 320 (327)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHH
T ss_conf 99999999869969987689893190699