HHsearch alignment for GI: 254780975 and conserved domain: cd04738

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=96.76  E-value=0.05  Score=33.29  Aligned_cols=194  Identities=21%  Similarity=0.313  Sum_probs=120.3

Q ss_pred             HCCCHHHHHHHHHHHHHCCCCEEEEEEE------------------CCEECCCCCCC----HHHHHHHHHC--CCCEEEE
Q ss_conf             3258899999999999659989999734------------------26345843417----8999986412--5641685
Q gi|254780975|r   12 LAADFSRLGEEISNITKAGAKQIHFDVM------------------DGCFVPNISFG----ADVIRSLRSY--SDSVFDC   67 (224)
Q Consensus        12 l~~d~~~l~~~i~~l~~~~~d~iHiDIm------------------Dg~fvpn~~~~----~~~i~~i~~~--t~~~~dv   67 (224)
T Consensus        54 lAAGfDKn~~~~~~~~~lGfGfvevGTVT~~pq~GNpkPRifRl~~~~aiiN~~GfnN~G~~~~~~~L~~~~~~~~~lgv  133 (327)
T cd04738          54 LAAGFDKNAEAIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGV  133 (327)
T ss_pred             ECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEECCCCCEEEHHCCCCCHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             54588988589999996698679971436888889999857974675401100458717699999999840456871799


Q ss_pred             EEEEEE--C-----CHHHH---HHCCCCCCEEEEECCC-----------CCCHHHHHHHHHHCC------CEEEEEEECC
Q ss_conf             678851--2-----03367---6404776079997066-----------421589998677649------8259985233
Q gi|254780975|r   68 HLMISS--I-----DSHIN---IIADAGCDIITFHPES-----------SPHIRRSLRTIHAMG------KKTGVAINPE  120 (224)
Q Consensus        68 HLMv~~--P-----~~~i~---~~~~~g~d~i~~H~E~-----------~~~~~~~i~~i~~~g------~k~Giai~p~  120 (224)
T Consensus       134 nIg~nk~t~~e~~~~Dy~~~~~~l~~~-aDy~~iNiSsPNt~glr~lq~~~~l~~ll~~v~~~~~~~~~~~Pi~vKlsPD  212 (327)
T cd04738         134 NIGKNKDTPLEDAVEDYVIGVRKLGPY-ADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD  212 (327)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             985047882676899999999985355-7789995468898451002688999999999999998537788669981799


Q ss_pred             CCHHHHHHHHHH-----CCEEEEE-E-------------EEC-CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CC
Q ss_conf             344789988620-----1402899-8-------------306-7765332201357789986543138652698158-99
Q gi|254780975|r  121 TPVAILEDVIDE-----IDMILIM-T-------------VNP-GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGG-VT  179 (224)
Q Consensus       121 T~~~~i~~~l~~-----~D~vliM-~-------------V~P-G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGG-vn  179 (224)
T Consensus       213 ~~~~~i~~i~~~~~~~g~dGvi~tNTt~~r~~~~~~~~~~~~GGlSG~pl~~~s~~~v~~v~~~~~~-~~pIIgvGGI~s  291 (327)
T cd04738         213 LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGG-KIPIIGVGGISS  291 (327)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCEEEECCCCC
T ss_conf             7667899999999973997899958855542124565556668636406789999999999997499-981999889799


Q ss_pred             HHHHHHHHHCCCCEEEECHH-HHCCCCHH
Q ss_conf             88999999679989997426-63789989
Q gi|254780975|r  180 SRNIKSLVQAGADLLVVGSS-FFNQKGEI  207 (224)
Q Consensus       180 ~~~i~~l~~~Gad~~V~Gsa-if~~~d~~  207 (224)
T Consensus       292 ~~Da~e~i~aGAslVQiyT~liy~GP~li  320 (327)
T cd04738         292 GEDAYEKIRAGASLVQLYTGLVYEGPGLV  320 (327)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHCCCHHH
T ss_conf             99999999869969987689893190699