Query gi|254780975|ref|YP_003065388.1| D-ribulose-5 phosphate 3-epimerase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 224
No_of_seqs 118 out of 2458
Neff 6.5
Searched_HMMs 39220
Date Mon May 30 02:40:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780975.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01163 rpe ribulose-phospha 100.0 0 0 561.8 20.1 209 6-214 1-216 (216)
2 PRK08745 ribulose-phosphate 3- 100.0 0 0 494.4 25.1 220 1-224 1-223 (223)
3 PRK05581 ribulose-phosphate 3- 100.0 0 0 492.8 24.4 214 2-215 1-216 (220)
4 COG0036 Rpe Pentose-5-phosphat 100.0 0 0 493.0 22.4 215 3-217 2-217 (220)
5 PRK08005 ribulose-phosphate 3- 100.0 0 0 489.7 22.4 210 5-216 1-210 (210)
6 PRK08091 ribulose-phosphate 3- 100.0 0 0 490.2 21.1 216 1-218 9-235 (235)
7 PRK08883 ribulose-phosphate 3- 100.0 0 0 484.5 24.4 208 7-214 2-212 (220)
8 PRK09722 allulose-6-phosphate 100.0 0 0 481.5 23.1 215 5-220 1-220 (227)
9 PTZ00170 D-ribulose-5-phosphat 100.0 0 0 480.2 23.6 211 3-216 1-217 (224)
10 cd00429 RPE Ribulose-5-phospha 100.0 0 0 477.7 22.0 208 6-213 1-210 (211)
11 pfam00834 Ribul_P_3_epim Ribul 100.0 0 0 479.1 20.9 199 6-204 1-201 (201)
12 KOG3111 consensus 100.0 0 0 438.5 22.0 217 1-219 1-219 (224)
13 TIGR03128 RuMP_HxlA 3-hexulose 99.7 1E-14 2.7E-19 114.3 17.5 196 12-216 4-205 (206)
14 PRK07028 bifunctional hexulose 99.7 5.7E-14 1.4E-18 109.6 19.2 197 12-220 8-213 (429)
15 PRK13306 ulaD 3-keto-L-gulonat 99.6 8.4E-14 2.1E-18 108.5 17.2 197 12-217 8-211 (216)
16 PRK13305 sgbH 3-keto-L-gulonat 99.6 3.3E-13 8.5E-18 104.7 17.3 197 12-217 8-211 (220)
17 COG0269 SgbH 3-hexulose-6-phos 99.5 2.7E-12 6.8E-17 98.9 17.3 197 12-217 8-212 (217)
18 PRK13307 bifunctional formalde 99.5 1.5E-11 3.8E-16 94.1 18.4 192 13-216 181-377 (392)
19 PRK13813 orotidine 5'-phosphat 99.4 2.4E-12 6.2E-17 99.2 8.6 201 1-216 1-211 (215)
20 cd04726 KGPDC_HPS 3-Keto-L-gul 99.4 3.5E-11 8.9E-16 91.8 13.6 190 12-213 5-202 (202)
21 PRK13127 consensus 99.0 1.5E-07 3.9E-12 68.5 19.3 206 7-218 13-252 (262)
22 CHL00200 trpA tryptophan synth 99.0 1.8E-07 4.6E-12 68.0 18.7 190 7-202 17-236 (263)
23 PRK13122 consensus 99.0 1.6E-07 4.1E-12 68.4 18.1 208 1-219 1-239 (242)
24 PRK13111 trpA tryptophan synth 99.0 7.1E-07 1.8E-11 64.3 21.1 203 7-216 11-246 (256)
25 cd04722 TIM_phosphate_binding 99.0 4.1E-08 1E-12 72.2 14.7 176 20-198 15-200 (200)
26 PRK00043 thiE thiamine-phospha 99.0 2E-07 5E-12 67.8 17.1 196 7-219 12-208 (210)
27 PRK03220 consensus 99.0 3E-07 7.7E-12 66.6 18.0 199 1-207 1-242 (257)
28 PRK13129 consensus 99.0 3.3E-07 8.4E-12 66.4 18.1 190 7-202 21-240 (267)
29 cd04724 Tryptophan_synthase_al 98.9 9.8E-07 2.5E-11 63.4 19.6 198 15-219 12-240 (242)
30 PRK13117 consensus 98.9 1.7E-06 4.3E-11 61.8 20.1 191 7-202 19-239 (268)
31 PRK02621 consensus 98.9 5.6E-07 1.4E-11 64.9 17.4 202 1-211 1-242 (254)
32 PRK00748 1-(5-phosphoribosyl)- 98.9 1.7E-06 4.2E-11 61.9 18.9 186 11-207 26-231 (241)
33 pfam00977 His_biosynth Histidi 98.9 1.3E-06 3.4E-11 62.5 18.3 184 10-204 25-227 (229)
34 PRK13131 consensus 98.9 1.9E-06 4.9E-11 61.5 19.0 208 5-218 11-253 (257)
35 pfam00290 Trp_syntA Tryptophan 98.8 2.6E-06 6.7E-11 60.6 19.6 203 7-216 11-249 (258)
36 cd04731 HisF The cyclase subun 98.8 3E-06 7.6E-11 60.3 19.9 185 13-208 26-234 (243)
37 PRK13118 consensus 98.8 1.4E-06 3.5E-11 62.4 17.7 191 7-202 19-238 (269)
38 PRK13125 trpA tryptophan synth 98.8 1.7E-06 4.4E-11 61.8 17.8 211 1-219 2-242 (247)
39 PRK13585 1-(5-phosphoribosyl)- 98.8 2.9E-06 7.4E-11 60.4 18.9 180 15-205 32-229 (240)
40 PRK13136 consensus 98.8 5.3E-07 1.4E-11 65.0 15.1 191 7-203 14-232 (253)
41 PRK02145 consensus 98.8 1.9E-06 4.7E-11 61.6 17.7 204 1-213 2-248 (257)
42 PRK01659 consensus 98.8 2.8E-06 7.2E-11 60.4 18.4 204 1-213 1-244 (252)
43 cd04723 HisA_HisF Phosphoribos 98.8 2.5E-06 6.5E-11 60.7 18.1 182 10-204 31-225 (233)
44 PRK13139 consensus 98.8 2.8E-06 7.2E-11 60.4 18.0 193 4-203 15-237 (254)
45 cd00564 TMP_TenI Thiamine mono 98.8 6.6E-07 1.7E-11 64.5 14.7 190 7-214 4-195 (196)
46 PRK13135 consensus 98.8 2.4E-06 6.1E-11 60.9 17.4 191 7-202 19-237 (267)
47 cd04732 HisA HisA. Phosphorib 98.8 2.7E-06 6.9E-11 60.5 17.6 183 11-204 26-226 (234)
48 PRK07695 transcriptional regul 98.8 3.9E-06 1E-10 59.5 18.4 191 7-218 7-198 (202)
49 PRK13119 consensus 98.8 6.4E-06 1.6E-10 58.1 19.1 189 7-202 17-236 (261)
50 PRK13113 consensus 98.8 1E-05 2.6E-10 56.8 20.0 210 7-222 19-262 (263)
51 PRK13597 imidazole glycerol ph 98.7 8.1E-06 2.1E-10 57.5 19.2 187 19-213 33-241 (252)
52 PRK04281 consensus 98.7 1.1E-05 2.8E-10 56.7 19.8 188 19-214 32-246 (254)
53 PRK13140 consensus 98.7 5.3E-06 1.4E-10 58.7 18.1 203 7-217 16-256 (257)
54 PRK02747 consensus 98.7 6.7E-06 1.7E-10 58.0 18.6 204 1-213 1-247 (257)
55 PRK13134 consensus 98.7 4.9E-06 1.3E-10 58.9 17.8 201 7-214 21-255 (257)
56 COG0352 ThiE Thiamine monophos 98.7 2.3E-06 5.8E-11 61.0 15.8 183 20-218 24-207 (211)
57 PRK03512 thiamine-phosphate py 98.7 6.3E-06 1.6E-10 58.2 18.0 182 21-218 23-207 (211)
58 PRK13124 consensus 98.7 1.2E-05 3.1E-10 56.3 18.9 202 7-216 11-246 (257)
59 PRK13116 consensus 98.7 8E-06 2E-10 57.5 17.2 192 7-202 19-240 (278)
60 PRK02615 thiamine-phosphate py 98.6 8.5E-06 2.2E-10 57.4 16.9 188 17-219 155-342 (345)
61 PRK13587 1-(5-phosphoribosyl)- 98.6 1E-05 2.6E-10 56.9 17.2 176 21-204 35-228 (234)
62 PRK13121 consensus 98.6 1.6E-05 4.2E-10 55.5 17.8 191 7-202 19-238 (265)
63 TIGR03572 WbuZ glycosyl amidat 98.6 1.4E-05 3.6E-10 56.0 17.0 176 14-200 30-230 (232)
64 PRK02083 imidazole glycerol ph 98.6 3.5E-05 8.8E-10 53.5 19.0 186 19-213 32-244 (253)
65 PRK13114 consensus 98.6 5.1E-05 1.3E-09 52.4 19.7 191 7-202 15-234 (266)
66 PRK13112 consensus 98.6 1.3E-05 3.2E-10 56.2 16.5 191 7-202 20-239 (279)
67 PRK13586 1-(5-phosphoribosyl)- 98.6 1.6E-05 4.1E-10 55.6 16.7 178 14-204 29-224 (231)
68 COG0159 TrpA Tryptophan syntha 98.6 3.8E-05 9.8E-10 53.2 18.5 209 6-220 18-259 (265)
69 PRK05211 consensus 98.5 2.7E-05 6.9E-10 54.1 17.3 187 14-211 21-236 (248)
70 PRK00830 consensus 98.5 5.2E-05 1.3E-09 52.3 18.6 188 17-212 34-263 (273)
71 PRK01033 imidazole glycerol ph 98.5 1.7E-05 4.2E-10 55.5 15.9 180 18-205 31-235 (253)
72 PRK13138 consensus 98.5 8.6E-05 2.2E-09 50.9 19.2 188 7-201 15-235 (264)
73 cd04730 NPD_like 2-Nitropropan 98.5 9.6E-06 2.5E-10 57.0 14.2 145 52-205 43-193 (236)
74 PRK13115 consensus 98.5 4.8E-05 1.2E-09 52.6 17.3 206 6-219 25-263 (269)
75 PRK13133 consensus 98.5 5.4E-05 1.4E-09 52.2 17.6 206 7-219 17-265 (267)
76 PRK13123 consensus 98.5 7.1E-05 1.8E-09 51.5 18.2 206 7-220 17-254 (256)
77 COG0106 HisA Phosphoribosylfor 98.5 0.00016 4E-09 49.2 19.6 180 14-205 31-229 (241)
78 PRK13120 consensus 98.4 5.3E-05 1.4E-09 52.3 16.4 189 7-202 23-242 (285)
79 PRK13126 consensus 98.4 2.2E-05 5.5E-10 54.7 13.9 206 7-219 8-232 (237)
80 PRK01222 N-(5'-phosphoribosyl) 98.4 0.00014 3.6E-09 49.5 18.0 188 17-222 11-211 (212)
81 PRK12290 thiE thiamine-phospha 98.4 3.5E-05 8.9E-10 53.4 14.8 181 22-216 224-413 (439)
82 pfam00215 OMPdecase Orotidine 98.4 1.1E-06 2.8E-11 63.1 7.0 199 11-213 4-218 (218)
83 PRK06512 thiamine-phosphate py 98.4 0.00011 2.9E-09 50.2 17.3 194 7-218 18-213 (221)
84 PRK00230 orotidine 5'-phosphat 98.4 5.1E-06 1.3E-10 58.8 10.2 199 1-215 1-226 (231)
85 PRK13132 consensus 98.4 0.00019 4.7E-09 48.8 17.7 200 7-216 13-245 (246)
86 PRK13137 consensus 98.3 0.00014 3.7E-09 49.5 16.0 200 7-214 27-261 (266)
87 PRK01130 N-acetylmannosamine-6 98.3 0.00012 3.1E-09 50.0 15.2 178 17-217 23-220 (222)
88 pfam00697 PRAI N-(5'phosphorib 98.3 0.0002 5E-09 48.6 16.1 166 21-204 10-181 (195)
89 cd04725 OMP_decarboxylase_like 98.3 4.5E-06 1.2E-10 59.1 7.7 190 12-213 3-216 (216)
90 pfam04131 NanE Putative N-acet 98.2 0.00026 6.7E-09 47.8 15.9 157 50-218 20-191 (192)
91 PRK07565 dihydroorotate dehydr 98.2 0.00018 4.6E-09 48.9 14.8 149 54-205 93-277 (333)
92 cd00405 PRAI Phosphoribosylant 98.2 0.00027 7E-09 47.7 15.6 170 21-204 10-188 (203)
93 PRK13958 N-(5'-phosphoribosyl) 98.2 0.00085 2.2E-08 44.6 17.6 171 21-208 12-195 (207)
94 PRK07455 keto-hydroxyglutarate 98.1 0.00021 5.4E-09 48.4 14.2 173 6-205 14-189 (210)
95 cd04729 NanE N-acetylmannosami 98.1 0.00019 4.7E-09 48.8 13.5 166 17-201 27-210 (219)
96 PRK04128 1-(5-phosphoribosyl)- 98.1 0.001 2.7E-08 44.0 17.0 175 14-207 30-221 (228)
97 PRK09427 bifunctional indole-3 98.1 0.00048 1.2E-08 46.1 14.9 163 21-204 269-441 (459)
98 pfam03060 NPD 2-nitropropane d 98.1 0.00024 6.1E-09 48.1 13.3 124 74-205 103-229 (330)
99 PRK00278 trpC indole-3-glycero 98.1 0.00028 7.2E-09 47.6 13.6 191 7-214 59-257 (261)
100 COG0135 TrpF Phosphoribosylant 98.1 0.0013 3.3E-08 43.5 17.0 176 17-210 10-199 (208)
101 PRK00748 1-(5-phosphoribosyl)- 98.0 3.5E-05 9E-10 53.4 8.4 37 169-205 73-110 (241)
102 pfam01081 Aldolase KDPG and KH 98.0 0.00024 6.2E-09 48.0 12.6 175 3-205 6-184 (196)
103 pfam02581 TMP-TENI Thiamine mo 98.0 0.0003 7.6E-09 47.5 12.9 176 7-200 4-180 (180)
104 PRK09140 2-dehydro-3-deoxy-6-p 98.0 0.00064 1.6E-08 45.4 14.6 173 6-205 11-187 (206)
105 PRK07259 dihydroorotate dehydr 98.0 0.00015 3.8E-09 49.4 11.2 154 60-218 89-282 (301)
106 PRK09517 multifunctional thiam 98.0 0.00075 1.9E-08 44.9 14.7 188 17-218 18-207 (738)
107 TIGR00007 TIGR00007 phosphorib 98.0 0.0018 4.5E-08 42.6 17.0 176 20-204 31-235 (241)
108 PRK02621 consensus 98.0 5.5E-05 1.4E-09 52.2 8.4 38 169-206 74-112 (254)
109 PRK06857 consensus 98.0 0.00069 1.8E-08 45.2 13.8 171 6-205 13-188 (209)
110 pfam00218 IGPS Indole-3-glycer 98.0 0.00094 2.4E-08 44.3 14.5 192 7-212 57-253 (254)
111 cd00331 IGPS Indole-3-glycerol 98.0 0.0005 1.3E-08 46.1 12.9 192 7-212 20-216 (217)
112 PRK08904 consensus 98.0 0.00087 2.2E-08 44.5 14.2 187 6-221 11-203 (207)
113 TIGR03572 WbuZ glycosyl amidat 97.9 8.4E-05 2.1E-09 51.0 8.7 39 168-206 73-112 (232)
114 PRK06015 keto-hydroxyglutarate 97.9 0.00076 1.9E-08 44.9 13.5 170 6-204 16-190 (212)
115 COG0134 TrpC Indole-3-glycerol 97.9 0.00076 1.9E-08 44.9 13.5 193 6-213 54-252 (254)
116 PRK02747 consensus 97.9 9.2E-05 2.3E-09 50.8 8.7 41 167-207 72-113 (257)
117 PRK13597 imidazole glycerol ph 97.9 1E-04 2.5E-09 50.5 8.7 69 133-207 45-114 (252)
118 PRK01033 imidazole glycerol ph 97.9 0.00012 3.1E-09 50.0 8.9 41 167-207 72-113 (253)
119 COG3010 NanE Putative N-acetyl 97.9 0.0015 3.8E-08 43.0 14.5 175 24-220 40-229 (229)
120 cd04740 DHOD_1B_like Dihydroor 97.9 0.00061 1.5E-08 45.5 12.5 160 53-217 77-278 (296)
121 PRK13585 1-(5-phosphoribosyl)- 97.9 0.00011 2.9E-09 50.2 8.7 36 170-205 76-112 (240)
122 cd01572 QPRTase Quinolinate ph 97.9 0.0002 5E-09 48.6 9.9 104 87-204 153-261 (268)
123 PRK05211 consensus 97.9 0.00018 4.6E-09 48.9 9.4 38 169-206 65-103 (248)
124 cd04739 DHOD_like Dihydroorota 97.9 0.00084 2.1E-08 44.6 12.8 151 53-206 90-276 (325)
125 PRK06552 keto-hydroxyglutarate 97.9 0.002 5.1E-08 42.2 14.7 184 6-220 14-202 (209)
126 PRK04281 consensus 97.9 0.00012 3.1E-09 50.0 8.4 40 167-206 72-112 (254)
127 PRK03220 consensus 97.9 0.00013 3.3E-09 49.8 8.6 81 121-207 32-114 (257)
128 PRK02145 consensus 97.9 0.00013 3.3E-09 49.8 8.6 81 121-207 32-114 (257)
129 PRK02083 imidazole glycerol ph 97.9 0.00015 3.8E-09 49.4 8.8 40 36-91 10-49 (253)
130 pfam00977 His_biosynth Histidi 97.8 0.00015 3.8E-09 49.4 8.7 35 170-204 74-109 (229)
131 TIGR03151 enACPred_II putative 97.8 0.0017 4.3E-08 42.7 14.1 142 52-205 52-198 (307)
132 TIGR00693 thiE thiamine-phosph 97.8 0.0032 8.3E-08 40.9 15.5 199 8-213 6-210 (210)
133 COG0284 PyrF Orotidine-5'-phos 97.8 0.00056 1.4E-08 45.7 11.5 197 11-217 15-234 (240)
134 PRK00830 consensus 97.8 9.9E-05 2.5E-09 50.5 7.6 82 120-207 34-117 (273)
135 PRK05567 inositol-5'-monophosp 97.8 0.0027 6.8E-08 41.4 14.8 125 75-205 230-368 (486)
136 PRK08104 consensus 97.8 0.0035 9E-08 40.6 16.5 172 5-204 15-190 (212)
137 PRK01659 consensus 97.8 0.00012 3E-09 50.1 7.7 38 169-206 74-112 (252)
138 PRK07428 nicotinate-nucleotide 97.8 0.00039 1E-08 46.7 10.2 106 86-204 163-275 (285)
139 cd01568 QPRTase_NadC Quinolina 97.8 0.0004 1E-08 46.7 10.2 105 87-204 152-262 (269)
140 PRK08782 consensus 97.8 0.00078 2E-08 44.8 11.5 171 5-204 17-192 (219)
141 PRK04128 1-(5-phosphoribosyl)- 97.8 0.0002 5E-09 48.6 8.4 76 121-202 31-107 (228)
142 PRK05718 keto-hydroxyglutarate 97.8 0.0018 4.7E-08 42.4 13.3 170 6-204 16-190 (212)
143 PRK07896 nicotinate-nucleotide 97.8 0.00041 1.1E-08 46.6 9.8 117 75-204 148-280 (288)
144 PRK05848 nicotinate-nucleotide 97.7 0.00043 1.1E-08 46.5 9.7 102 92-204 160-263 (272)
145 cd04731 HisF The cyclase subun 97.7 0.00024 6.1E-09 48.1 8.4 41 35-91 6-46 (243)
146 pfam03932 CutC CutC family. Co 97.7 0.0048 1.2E-07 39.8 15.4 167 22-200 12-201 (202)
147 pfam04481 DUF561 Protein of un 97.7 0.005 1.3E-07 39.7 16.2 201 3-220 13-237 (243)
148 pfam01729 QRPTase_C Quinolinat 97.7 0.00048 1.2E-08 46.2 9.3 95 97-204 64-162 (169)
149 cd02810 DHOD_DHPD_FMN Dihydroo 97.7 0.00034 8.6E-09 47.1 8.2 144 60-204 96-280 (289)
150 PRK13803 bifunctional phosphor 97.7 0.006 1.5E-07 39.1 15.1 158 21-189 16-184 (611)
151 PRK05742 nicotinate-nucleotide 97.7 0.00066 1.7E-08 45.3 9.6 104 87-204 161-268 (277)
152 PTZ00314 inosine-5'-monophosph 97.6 0.0063 1.6E-07 39.0 15.2 125 75-205 240-378 (499)
153 PRK05265 pyridoxine 5'-phospha 97.6 0.0062 1.6E-07 39.1 14.4 195 15-218 22-235 (240)
154 cd04723 HisA_HisF Phosphoribos 97.6 0.00032 8.1E-09 47.3 7.7 48 36-90 6-53 (233)
155 PRK08072 nicotinate-nucleotide 97.6 0.00081 2.1E-08 44.7 9.7 104 87-204 159-267 (277)
156 PRK06096 molybdenum transport 97.6 0.00079 2E-08 44.8 9.6 106 86-204 157-270 (284)
157 PRK08385 nicotinate-nucleotide 97.6 0.0013 3.3E-08 43.4 10.1 94 98-204 169-267 (279)
158 cd00381 IMPDH IMPDH: The catal 97.6 0.0031 7.9E-08 41.0 12.0 129 75-205 96-234 (325)
159 pfam03740 PdxJ Pyridoxal phosp 97.6 0.0058 1.5E-07 39.2 13.3 193 17-218 22-235 (239)
160 TIGR01334 modD modD protein; I 97.6 0.00067 1.7E-08 45.2 8.5 99 97-205 173-271 (277)
161 PRK07114 keto-hydroxyglutarate 97.5 0.0024 6E-08 41.7 11.2 172 6-204 17-196 (223)
162 PRK08318 dihydropyrimidine deh 97.5 0.0084 2.1E-07 38.2 13.9 152 53-204 89-289 (413)
163 PRK06978 nicotinate-nucleotide 97.5 0.0012 3.1E-08 43.6 9.5 99 92-204 179-278 (288)
164 cd01573 modD_like ModD; Quinol 97.5 0.0016 4.1E-08 42.8 10.2 91 100-204 171-264 (272)
165 PRK13586 1-(5-phosphoribosyl)- 97.5 0.00095 2.4E-08 44.3 8.9 80 121-207 30-111 (231)
166 PRK06559 nicotinate-nucleotide 97.5 0.0014 3.4E-08 43.3 9.5 116 75-204 146-276 (290)
167 cd00452 KDPG_aldolase KDPG and 97.5 0.007 1.8E-07 38.7 13.1 169 5-201 4-175 (190)
168 TIGR00007 TIGR00007 phosphorib 97.5 0.00033 8.5E-09 47.2 6.3 90 119-216 27-119 (241)
169 PRK06843 inositol-5-monophosph 97.5 0.004 1E-07 40.3 11.8 128 76-205 156-293 (404)
170 cd04732 HisA HisA. Phosphorib 97.5 0.00091 2.3E-08 44.4 8.4 27 172-198 168-198 (234)
171 PRK13587 1-(5-phosphoribosyl)- 97.5 0.00097 2.5E-08 44.2 8.5 27 172-198 170-200 (234)
172 pfam00478 IMPDH IMP dehydrogen 97.5 0.011 2.8E-07 37.5 14.5 125 75-205 225-363 (467)
173 PRK13957 indole-3-glycerol-pho 97.4 0.014 3.5E-07 36.9 15.8 192 7-213 50-246 (247)
174 PRK04302 triosephosphate isome 97.4 0.008 2E-07 38.3 12.0 161 40-214 38-219 (223)
175 PRK06106 nicotinate-nucleotide 97.4 0.0029 7.3E-08 41.2 9.6 115 76-204 142-271 (281)
176 pfam01884 PcrB PcrB family. Th 97.3 0.015 3.9E-07 36.5 13.8 187 11-214 13-228 (231)
177 PRK09016 quinolinate phosphori 97.3 0.0031 7.8E-08 41.0 9.4 115 75-203 158-286 (296)
178 PRK11572 copper homeostasis pr 97.3 0.018 4.6E-07 36.1 15.1 166 19-197 11-198 (248)
179 PRK07807 inositol-5-monophosph 97.3 0.0087 2.2E-07 38.1 11.4 178 18-205 166-367 (479)
180 PRK13802 bifunctional indole-3 97.3 0.018 4.7E-07 36.1 13.0 196 7-215 59-258 (695)
181 PRK10128 putative aldolase; Pr 97.2 0.02 5.1E-07 35.8 13.1 181 23-217 15-238 (250)
182 cd00003 PNPsynthase Pyridoxine 97.2 0.02 5.1E-07 35.8 15.0 194 16-218 20-232 (234)
183 PRK06256 biotin synthase; Vali 97.2 0.021 5.3E-07 35.7 14.3 188 15-206 91-308 (325)
184 TIGR03239 GarL 2-dehydro-3-deo 97.2 0.022 5.6E-07 35.5 12.8 172 23-200 26-233 (249)
185 PRK06543 nicotinate-nucleotide 97.1 0.006 1.5E-07 39.2 9.1 92 99-204 179-272 (281)
186 COG0106 HisA Phosphoribosylfor 97.1 0.0052 1.3E-07 39.5 8.6 79 121-205 32-112 (241)
187 TIGR01740 pyrF orotidine 5'-ph 97.0 0.0036 9.3E-08 40.5 7.2 194 11-214 2-233 (233)
188 PRK10558 alpha-dehydro-beta-de 97.0 0.034 8.7E-07 34.3 13.1 171 23-199 33-239 (256)
189 PRK05096 guanosine 5'-monophos 96.9 0.021 5.4E-07 35.6 10.6 124 78-205 113-250 (347)
190 pfam01180 DHO_dh Dihydroorotat 96.9 0.015 3.8E-07 36.6 9.8 154 62-218 93-288 (290)
191 PRK08649 inositol-5-monophosph 96.9 0.021 5.5E-07 35.6 10.3 130 73-205 141-292 (368)
192 PRK09853 putative selenate red 96.9 0.044 1.1E-06 33.6 11.8 146 50-205 232-394 (1032)
193 TIGR01302 IMP_dehydrog inosine 96.9 0.034 8.6E-07 34.3 11.2 181 17-205 173-379 (476)
194 PRK00957 methionine synthase; 96.8 0.048 1.2E-06 33.4 11.9 91 19-116 148-245 (307)
195 TIGR03315 Se_ygfK putative sel 96.8 0.045 1.1E-06 33.6 11.5 155 41-205 204-381 (1012)
196 KOG4175 consensus 96.8 0.04 1E-06 33.9 11.0 190 7-201 20-239 (268)
197 PRK09282 pyruvate carboxylase 96.8 0.051 1.3E-06 33.2 11.5 207 1-214 1-251 (580)
198 cd04738 DHOD_2_like Dihydrooro 96.8 0.05 1.3E-06 33.3 11.4 194 12-207 54-320 (327)
199 COG0157 NadC Nicotinate-nucleo 96.7 0.022 5.5E-07 35.6 9.4 117 75-204 137-269 (280)
200 PRK07107 inositol-5-monophosph 96.7 0.059 1.5E-06 32.8 14.2 184 18-205 181-389 (497)
201 PRK12330 oxaloacetate decarbox 96.7 0.045 1.2E-06 33.5 10.8 194 1-199 1-234 (499)
202 cd02940 DHPD_FMN Dihydropyrimi 96.6 0.033 8.3E-07 34.4 9.7 143 61-204 98-289 (299)
203 COG0800 Eda 2-keto-3-deoxy-6-p 96.6 0.074 1.9E-06 32.2 12.3 185 6-221 14-206 (211)
204 COG1646 Predicted phosphate-bi 96.5 0.06 1.5E-06 32.8 10.5 171 17-205 28-228 (240)
205 PRK02506 dihydroorotate dehydr 96.5 0.08 2E-06 32.0 13.4 198 5-207 15-279 (308)
206 cd00311 TIM Triosephosphate is 96.4 0.084 2.1E-06 31.8 10.8 126 78-204 77-235 (242)
207 pfam01207 Dus Dihydrouridine s 96.3 0.097 2.5E-06 31.4 13.4 49 154-205 171-221 (309)
208 TIGR03471 HpnJ hopanoid biosyn 96.3 0.072 1.8E-06 32.3 9.8 130 13-145 226-381 (472)
209 PRK09427 bifunctional indole-3 96.3 0.11 2.7E-06 31.1 15.5 183 15-214 72-256 (459)
210 PRK04169 geranylgeranylglycery 96.2 0.014 3.4E-07 36.9 5.8 164 23-204 24-221 (229)
211 TIGR02129 hisA_euk phosphoribo 96.2 0.0092 2.3E-07 38.0 4.9 71 135-217 61-134 (274)
212 PRK11815 tRNA-dihydrouridine s 96.2 0.083 2.1E-06 31.9 9.6 129 7-138 67-232 (333)
213 cd02812 PcrB_like PcrB_like pr 96.2 0.018 4.5E-07 36.2 6.1 165 24-205 19-212 (219)
214 pfam03437 BtpA BtpA family. Th 96.1 0.13 3.3E-06 30.6 17.2 173 17-201 29-231 (254)
215 TIGR01303 IMP_DH_rel_1 IMP deh 96.1 0.097 2.5E-06 31.4 9.7 129 74-206 227-370 (476)
216 cd04741 DHOD_1A_like Dihydroor 96.0 0.14 3.6E-06 30.4 11.5 152 62-217 91-291 (294)
217 TIGR01108 oadA oxaloacetate de 96.0 0.027 6.8E-07 35.0 6.3 145 50-196 57-225 (616)
218 TIGR01182 eda 2-dehydro-3-deox 95.9 0.16 4.2E-06 30.0 10.6 189 3-222 6-203 (205)
219 TIGR01768 GGGP-family geranylg 95.7 0.037 9.5E-07 34.1 6.1 187 17-210 14-237 (242)
220 PRK12581 oxaloacetate decarbox 95.7 0.11 2.7E-06 31.2 8.4 189 1-197 9-238 (468)
221 cd02801 DUS_like_FMN Dihydrour 95.7 0.2 5E-06 29.5 14.7 175 26-207 19-223 (231)
222 cd01571 NAPRTase_B Nicotinate 95.6 0.036 9.1E-07 34.2 5.8 51 154-204 227-280 (302)
223 cd00516 PRTase_typeII Phosphor 95.6 0.044 1.1E-06 33.6 6.1 72 123-203 194-273 (281)
224 TIGR00262 trpA tryptophan synt 95.6 0.16 4E-06 30.1 8.9 185 15-203 22-233 (262)
225 COG0167 PyrD Dihydroorotate de 95.5 0.22 5.6E-06 29.2 11.7 130 76-206 113-280 (310)
226 cd03311 CIMS_C_terminal_like C 95.5 0.23 5.8E-06 29.1 11.0 144 18-164 156-329 (332)
227 COG3142 CutC Uncharacterized p 95.4 0.24 6.2E-06 28.9 12.6 162 23-198 14-201 (241)
228 PRK05286 dihydroorotate dehydr 95.4 0.1 2.6E-06 31.3 7.3 167 39-207 105-325 (336)
229 TIGR00078 nadC nicotinate-nucl 95.3 0.26 6.6E-06 28.7 9.8 121 66-201 122-265 (276)
230 PRK07188 nicotinate phosphorib 95.2 0.15 3.9E-06 30.1 7.8 95 99-204 222-323 (355)
231 PRK00042 tpiA triosephosphate 94.9 0.34 8.7E-06 27.9 16.2 194 1-204 1-240 (251)
232 PRK05458 guanosine 5'-monophos 94.9 0.35 8.9E-06 27.9 10.9 122 76-205 100-238 (326)
233 PRK05692 hydroxymethylglutaryl 94.8 0.37 9.3E-06 27.7 13.2 165 21-196 30-230 (287)
234 COG0107 HisF Imidazoleglycerol 94.7 0.35 8.8E-06 27.9 8.6 171 21-200 34-232 (256)
235 COG0325 Predicted enzyme with 94.7 0.39 1E-05 27.6 12.7 145 57-205 65-227 (228)
236 cd04727 pdxS PdxS is a subunit 94.6 0.14 3.7E-06 30.3 6.5 61 154-215 182-243 (283)
237 cd00003 PNPsynthase Pyridoxine 94.6 0.41 1.1E-05 27.4 13.0 143 73-221 22-176 (234)
238 COG2070 Dioxygenases related t 94.6 0.41 1.1E-05 27.4 12.0 147 52-205 55-221 (336)
239 PRK04180 pyridoxine biosynthes 94.6 0.13 3.3E-06 30.6 6.1 61 154-215 191-252 (293)
240 cd02931 ER_like_FMN Enoate red 94.5 0.43 1.1E-05 27.3 10.1 124 80-209 158-347 (382)
241 COG0214 SNZ1 Pyridoxine biosyn 94.5 0.16 4E-06 30.1 6.3 92 124-216 164-256 (296)
242 COG5016 Pyruvate/oxaloacetate 94.4 0.094 2.4E-06 31.5 5.2 172 23-197 34-231 (472)
243 COG0149 TpiA Triosephosphate i 94.4 0.46 1.2E-05 27.1 12.8 137 77-214 80-248 (251)
244 PRK10415 tRNA-dihydrouridine s 94.3 0.47 1.2E-05 27.0 13.8 172 26-206 29-233 (321)
245 PRK07094 biotin synthase; Prov 94.3 0.48 1.2E-05 27.0 13.0 180 14-197 70-280 (323)
246 PRK12331 oxaloacetate decarbox 94.2 0.34 8.6E-06 28.0 7.5 191 17-213 26-249 (463)
247 cd06824 PLPDE_III_Yggs_like Py 94.0 0.13 3.4E-06 30.5 5.1 136 64-203 72-224 (224)
248 PRK08195 4-hydroxy-2-ketovaler 93.8 0.59 1.5E-05 26.4 14.5 179 14-196 22-220 (337)
249 TIGR03470 HpnH hopanoid biosyn 93.8 0.59 1.5E-05 26.4 10.9 124 17-148 59-204 (318)
250 pfam00682 HMGL-like HMGL-like. 93.8 0.6 1.5E-05 26.4 13.3 171 16-196 13-212 (237)
251 TIGR00734 hisAF_rel hisA/hisF 93.8 0.6 1.5E-05 26.4 11.7 179 10-203 32-228 (230)
252 COG2108 Uncharacterized conser 93.7 0.61 1.6E-05 26.3 11.8 156 52-220 98-272 (353)
253 smart00812 Alpha_L_fucos Alpha 93.7 0.61 1.6E-05 26.3 9.4 118 71-197 80-233 (384)
254 COG0502 BioB Biotin synthase a 93.7 0.62 1.6E-05 26.3 9.6 196 15-216 85-315 (335)
255 PRK04452 acetyl-CoA decarbonyl 93.6 0.15 3.9E-06 30.1 4.9 27 71-97 74-101 (322)
256 cd02933 OYE_like_FMN Old yello 93.5 0.66 1.7E-05 26.1 11.1 123 80-208 160-325 (338)
257 PRK08662 nicotinate phosphorib 93.5 0.63 1.6E-05 26.2 8.0 50 154-204 243-295 (343)
258 PRK12857 putative aldolase; Re 93.5 0.66 1.7E-05 26.1 11.8 184 9-202 21-237 (284)
259 pfam05690 ThiG Thiazole biosyn 93.5 0.66 1.7E-05 26.1 10.2 187 16-216 18-222 (246)
260 cd04733 OYE_like_2_FMN Old yel 93.5 0.67 1.7E-05 26.1 9.9 124 82-208 159-333 (338)
261 PRK05265 pyridoxine 5'-phospha 93.5 0.67 1.7E-05 26.1 13.0 158 47-221 5-179 (240)
262 TIGR03217 4OH_2_O_val_ald 4-hy 93.5 0.68 1.7E-05 26.0 15.0 177 15-195 22-218 (333)
263 PRK09121 5-methyltetrahydropte 93.2 0.73 1.9E-05 25.8 8.3 90 18-115 157-272 (339)
264 TIGR00381 cdhD CO dehydrogenas 93.1 0.099 2.5E-06 31.4 3.3 134 31-201 115-253 (401)
265 cd02803 OYE_like_FMN_family Ol 93.1 0.76 1.9E-05 25.7 9.7 123 80-208 149-322 (327)
266 cd02809 alpha_hydroxyacid_oxid 93.1 0.77 2E-05 25.7 15.4 145 54-202 107-262 (299)
267 cd06822 PLPDE_III_YBL036c_euk 93.1 0.78 2E-05 25.7 11.1 152 49-202 49-227 (227)
268 PRK08227 aldolase; Validated 93.1 0.78 2E-05 25.6 9.1 142 60-217 99-273 (291)
269 CHL00162 thiG thiamin biosynth 93.0 0.78 2E-05 25.6 9.8 113 97-216 121-237 (267)
270 PRK08999 hypothetical protein; 92.9 0.81 2.1E-05 25.5 12.6 175 6-200 134-311 (312)
271 pfam01645 Glu_synthase Conserv 92.8 0.86 2.2E-05 25.4 8.4 118 84-201 170-307 (367)
272 pfam00121 TIM Triosephosphate 92.7 0.87 2.2E-05 25.3 15.1 184 15-206 12-239 (243)
273 PRK00208 thiG thiazole synthas 92.6 0.9 2.3E-05 25.3 9.6 185 18-216 22-224 (256)
274 KOG3055 consensus 92.5 0.25 6.3E-06 28.8 4.6 31 172-202 85-115 (263)
275 smart00729 Elp3 Elongator prot 92.4 0.78 2E-05 25.7 7.1 105 11-115 27-155 (216)
276 cd04728 ThiG Thiazole synthase 92.3 0.97 2.5E-05 25.0 10.1 185 18-216 21-223 (248)
277 pfam04055 Radical_SAM Radical 92.3 0.98 2.5E-05 25.0 9.8 84 13-98 27-113 (165)
278 TIGR01769 GGGP geranylgeranylg 92.1 0.29 7.3E-06 28.4 4.6 170 16-197 12-212 (212)
279 PRK04326 methionine synthase; 92.0 1.1 2.7E-05 24.8 11.7 90 18-115 162-260 (330)
280 PRK06267 hypothetical protein; 91.8 1.1 2.9E-05 24.6 12.3 192 9-216 58-282 (324)
281 pfam01717 Meth_synt_2 Cobalami 91.7 1.1 2.9E-05 24.6 11.0 137 19-163 156-320 (324)
282 PRK12737 gatY tagatose-bisphos 91.6 1.2 3E-05 24.5 11.8 185 9-201 21-236 (284)
283 PRK12331 oxaloacetate decarbox 91.5 0.88 2.3E-05 25.3 6.5 106 16-123 153-266 (463)
284 PRK08367 porA pyruvate ferredo 91.5 0.66 1.7E-05 26.1 5.9 65 83-148 259-330 (395)
285 TIGR02176 pyruv_ox_red pyruvat 91.4 0.62 1.6E-05 26.3 5.6 142 15-161 147-347 (1194)
286 PRK06806 fructose-bisphosphate 91.3 1.3 3.2E-05 24.3 13.8 186 9-202 21-235 (281)
287 KOG2550 consensus 91.3 1.3 3.2E-05 24.3 9.3 121 77-203 255-389 (503)
288 COG1856 Uncharacterized homolo 91.3 1.3 3.2E-05 24.3 14.9 199 10-216 35-266 (275)
289 PRK09627 oorA 2-oxoglutarate-a 91.2 1.3 3.3E-05 24.3 7.5 61 84-148 273-338 (375)
290 TIGR01304 IMP_DH_rel_2 IMP deh 91.1 0.071 1.8E-06 32.3 0.6 145 52-205 124-297 (376)
291 cd02808 GltS_FMN Glutamate syn 90.9 1.4 3.5E-05 24.1 8.8 106 96-201 198-319 (392)
292 PRK08366 vorA 2-ketoisovalerat 90.9 0.89 2.3E-05 25.3 6.1 63 85-148 263-332 (394)
293 PRK09622 porA pyruvate flavodo 90.9 0.76 1.9E-05 25.7 5.7 64 84-148 266-336 (407)
294 PRK01362 putative translaldola 90.8 1.4 3.6E-05 24.0 14.9 155 51-214 40-206 (214)
295 pfam01120 Alpha_L_fucos Alpha- 90.7 1.4 3.6E-05 24.0 8.8 117 71-200 91-242 (344)
296 cd04736 MDH_FMN Mandelate dehy 90.7 1.4 3.7E-05 23.9 11.9 113 102-220 227-343 (361)
297 cd00956 Transaldolase_FSA Tran 90.6 1.5 3.7E-05 23.9 15.7 159 51-215 40-207 (211)
298 PRK12738 kbaY tagatose-bisphos 90.0 1.6 4.2E-05 23.6 10.3 180 9-200 21-235 (286)
299 cd06811 PLPDE_III_yhfX_like Ty 89.5 1.8 4.6E-05 23.3 8.4 173 21-203 44-262 (382)
300 TIGR00735 hisF imidazoleglycer 89.4 1.8 4.6E-05 23.3 6.9 89 118-212 40-144 (312)
301 KOG1606 consensus 89.3 1.6 4E-05 23.7 6.2 42 174-215 214-256 (296)
302 TIGR01371 met_syn_B12ind 5-met 89.2 1.3 3.4E-05 24.2 5.8 123 17-146 602-752 (778)
303 PRK13523 NADPH dehydrogenase N 89.1 1.9 4.9E-05 23.1 9.3 123 81-208 151-316 (337)
304 PRK10605 N-ethylmaleimide redu 88.6 2.1 5.2E-05 23.0 12.4 121 82-210 169-334 (362)
305 PRK02227 hypothetical protein; 88.6 2.1 5.3E-05 22.9 20.3 180 18-204 9-215 (239)
306 TIGR00343 TIGR00343 pyridoxine 88.4 1.5 3.9E-05 23.8 5.7 43 174-216 210-253 (298)
307 PRK11840 bifunctional sulfur c 88.2 2.2 5.6E-05 22.8 10.2 113 97-216 182-298 (327)
308 COG1692 Calcineurin-like phosp 88.0 1.5 3.8E-05 23.8 5.4 60 70-132 124-189 (266)
309 pfam06073 DUF934 Bacterial pro 87.7 2.3 6E-05 22.6 7.9 76 114-198 1-78 (110)
310 COG0069 GltB Glutamate synthas 86.9 2.6 6.7E-05 22.3 8.1 131 68-199 253-405 (485)
311 PRK11197 lldD L-lactate dehydr 86.9 2.6 6.7E-05 22.3 11.6 113 102-220 236-354 (381)
312 TIGR01418 PEP_synth phosphoeno 86.8 2.7 6.8E-05 22.2 10.0 32 65-99 755-788 (877)
313 cd04737 LOX_like_FMN L-Lactate 86.7 2.7 6.8E-05 22.2 11.5 97 102-202 212-311 (351)
314 PRK08508 biotin synthase; Prov 86.4 2.8 7.1E-05 22.1 14.6 189 15-207 41-260 (279)
315 cd04735 OYE_like_4_FMN Old yel 86.4 2.8 7.1E-05 22.1 10.5 126 81-209 153-325 (353)
316 TIGR01859 fruc_bis_ald_ fructo 86.3 1.1 2.7E-05 24.8 3.9 135 17-161 164-324 (339)
317 cd00947 TBP_aldolase_IIB Tagat 86.3 2.8 7.2E-05 22.1 15.8 183 9-202 16-231 (276)
318 COG0320 LipA Lipoate synthase 86.2 2.8 7.2E-05 22.1 8.8 129 71-203 99-254 (306)
319 COG1891 Uncharacterized protei 86.2 2.8 7.3E-05 22.1 12.8 186 15-206 6-217 (235)
320 pfam01070 FMN_dh FMN-dependent 86.1 2.9 7.3E-05 22.0 15.3 143 54-202 100-259 (301)
321 cd02930 DCR_FMN 2,4-dienoyl-Co 86.0 2.9 7.4E-05 22.0 9.9 122 81-208 146-317 (353)
322 PRK10550 tRNA-dihydrouridine s 85.8 3 7.6E-05 21.9 12.7 141 62-206 62-233 (312)
323 cd03332 LMO_FMN L-Lactate 2-mo 85.7 3 7.7E-05 21.9 11.6 115 102-220 244-362 (383)
324 PRK12999 pyruvate carboxylase; 85.6 3 7.8E-05 21.9 7.0 143 50-197 594-767 (1147)
325 pfam00224 PK Pyruvate kinase, 85.6 3.1 7.8E-05 21.9 12.9 147 70-222 174-340 (348)
326 pfam04476 DUF556 Protein of un 85.3 3.1 8E-05 21.8 17.5 181 18-205 9-216 (235)
327 pfam01791 DeoC DeoC/LacD famil 84.5 3.4 8.7E-05 21.5 10.8 168 16-202 18-230 (231)
328 cd02932 OYE_YqiM_FMN Old yello 84.1 3.5 9E-05 21.4 10.3 121 82-208 164-331 (336)
329 PRK13209 L-xylulose 5-phosphat 83.8 3.4 8.8E-05 21.5 5.6 198 17-217 21-273 (283)
330 COG0191 Fba Fructose/tagatose 83.6 2.5 6.3E-05 22.4 4.7 181 9-200 21-237 (286)
331 COG0620 MetE Methionine syntha 83.4 3.8 9.7E-05 21.3 11.4 153 8-164 148-323 (330)
332 COG2022 ThiG Uncharacterized e 82.9 4 0.0001 21.1 9.3 124 85-215 97-229 (262)
333 cd00635 PLPDE_III_YBL036c_like 82.9 4 0.0001 21.1 13.0 150 49-202 51-222 (222)
334 COG1411 Uncharacterized protei 82.5 4.1 0.0001 21.0 11.5 177 13-210 35-223 (229)
335 cd00717 URO-D Uroporphyrinogen 81.8 3.4 8.6E-05 21.6 4.9 16 76-91 181-196 (335)
336 PRK06801 hypothetical protein; 81.7 4.4 0.00011 20.9 12.7 185 9-201 21-237 (286)
337 pfam01116 F_bP_aldolase Fructo 81.3 4.5 0.00012 20.8 12.7 185 9-201 19-235 (283)
338 COG2069 CdhD CO dehydrogenase/ 81.1 1.7 4.4E-05 23.5 3.2 118 71-197 149-285 (403)
339 TIGR00010 TIGR00010 hydrolase, 80.7 4.2 0.00011 21.0 5.0 130 30-166 101-252 (269)
340 PRK12484 nicotinate phosphorib 79.8 4.1 0.0001 21.0 4.8 51 155-205 262-317 (443)
341 PRK09195 gatY tagatose-bisphos 79.7 5.1 0.00013 20.4 13.7 181 10-201 22-236 (284)
342 PRK08659 2-oxoglutarate ferred 79.6 5.2 0.00013 20.4 7.7 61 85-148 273-337 (377)
343 TIGR01037 pyrD_sub1_fam dihydr 79.2 4.1 0.0001 21.0 4.6 168 4-204 93-277 (308)
344 PRK07998 gatY putative fructos 79.0 5.4 0.00014 20.3 12.9 186 9-201 21-233 (283)
345 COG0434 SgcQ Predicted TIM-bar 78.9 5.4 0.00014 20.3 16.1 174 18-203 35-238 (263)
346 cd00288 Pyruvate_Kinase Pyruva 78.5 5.6 0.00014 20.2 11.8 152 65-222 167-338 (480)
347 pfam09370 TIM-br_sig_trns TIM- 77.8 5.8 0.00015 20.1 6.6 53 151-203 194-252 (268)
348 TIGR01036 pyrD_sub2 dihydrooro 77.7 5.9 0.00015 20.1 5.2 81 136-217 266-353 (370)
349 PRK00125 pyrF orotidine 5'-pho 77.4 6 0.00015 20.0 8.6 50 156-205 199-253 (277)
350 PRK00366 ispG 4-hydroxy-3-meth 77.4 6 0.00015 20.0 7.9 100 10-120 32-139 (367)
351 pfam04551 GcpE GcpE protein. I 77.2 6 0.00015 20.0 8.1 100 10-120 21-128 (345)
352 cd01335 Radical_SAM Radical SA 77.2 6.1 0.00015 20.0 8.7 98 17-118 31-146 (204)
353 KOG4201 consensus 76.5 6.3 0.00016 19.8 11.1 192 10-215 85-284 (289)
354 TIGR01919 hisA-trpF bifunction 75.8 6.6 0.00017 19.7 14.2 177 19-205 35-236 (246)
355 PRK05835 fructose-bisphosphate 75.6 2.5 6.3E-05 22.4 2.6 182 9-200 20-258 (307)
356 TIGR01858 tag_bisphos_ald clas 75.5 2.4 6.2E-05 22.5 2.6 178 11-200 18-233 (282)
357 pfam01208 URO-D Uroporphyrinog 75.2 6.9 0.00017 19.6 7.2 16 76-91 183-198 (337)
358 COG0042 tRNA-dihydrouridine sy 74.7 7 0.00018 19.5 12.9 139 62-206 66-237 (323)
359 pfam09587 PGA_cap Bacterial ca 74.6 7.1 0.00018 19.5 7.3 123 71-199 61-212 (237)
360 TIGR02708 L_lactate_ox L-lacta 74.6 6 0.00015 20.0 4.4 54 151-205 267-322 (368)
361 cd04743 NPD_PKS 2-Nitropropane 74.5 7.1 0.00018 19.5 14.1 147 52-205 44-211 (320)
362 PRK09243 nicotinate phosphorib 74.5 5.9 0.00015 20.0 4.3 50 154-203 268-322 (466)
363 pfam05582 Peptidase_U57 YabG p 74.5 7.1 0.00018 19.5 9.3 116 90-206 108-237 (287)
364 CHL00197 carA carbamoyl-phosph 74.4 7.2 0.00018 19.5 8.3 96 98-197 117-223 (383)
365 PRK07709 fructose-bisphosphate 74.4 7.2 0.00018 19.5 13.8 185 9-200 21-236 (285)
366 pfam05853 DUF849 Prokaryotic p 74.3 7.2 0.00018 19.5 14.9 184 15-204 24-237 (274)
367 PRK13352 thiamine biosynthesis 74.2 7.2 0.00018 19.5 10.2 186 5-200 62-299 (433)
368 COG1830 FbaB DhnA-type fructos 74.2 7.3 0.00018 19.5 12.3 175 15-216 41-256 (265)
369 COG0821 gcpE 1-hydroxy-2-methy 74.0 7.3 0.00019 19.4 13.5 96 14-120 33-133 (361)
370 pfam01168 Ala_racemase_N Alani 73.4 7.6 0.00019 19.3 14.8 147 51-203 55-214 (216)
371 KOG3157 consensus 73.4 7.6 0.00019 19.3 6.3 154 48-206 56-239 (244)
372 cd00740 MeTr MeTr subgroup of 73.4 7.6 0.00019 19.3 8.3 109 6-119 15-129 (252)
373 PTZ00333 triosephosphate isome 73.2 7.6 0.0002 19.3 16.9 124 78-202 82-240 (252)
374 COG0280 Pta Phosphotransacetyl 73.1 7.7 0.0002 19.3 6.6 198 7-207 38-271 (327)
375 PRK07226 fructose-bisphosphate 73.0 7.7 0.0002 19.3 12.1 175 16-217 38-251 (266)
376 PRK10076 pyruvate formate lyas 72.7 7.8 0.0002 19.2 4.8 21 154-174 191-211 (213)
377 cd06591 GH31_xylosidase_XylS X 72.4 8 0.0002 19.2 8.1 26 95-120 64-89 (319)
378 pfam02593 DUF166 Uncharacteriz 72.2 8.1 0.00021 19.2 10.0 124 49-179 8-141 (215)
379 TIGR03569 NeuB_NnaB N-acetylne 72.1 8.1 0.00021 19.1 15.0 198 13-220 12-255 (329)
380 cd06502 TA_like Low-specificit 71.4 8.4 0.00021 19.0 6.1 72 138-216 130-222 (338)
381 PRK00694 4-hydroxy-3-methylbut 71.3 8.5 0.00022 19.0 9.9 52 15-69 43-97 (606)
382 TIGR01235 pyruv_carbox pyruvat 70.9 3.4 8.7E-05 21.6 2.4 141 50-197 611-785 (1169)
383 cd04734 OYE_like_3_FMN Old yel 70.6 8.8 0.00022 18.9 10.5 138 68-208 129-326 (343)
384 TIGR03527 selenium_YedF seleni 70.4 8.9 0.00023 18.9 7.4 74 133-206 84-169 (194)
385 cd02929 TMADH_HD_FMN Trimethyl 70.1 9 0.00023 18.9 10.3 139 67-208 137-330 (370)
386 smart00854 PGA_cap Bacterial c 69.9 9.1 0.00023 18.8 9.3 126 71-199 59-214 (239)
387 PRK12656 fructose-6-phosphate 69.5 9.3 0.00024 18.8 15.2 155 52-214 42-210 (222)
388 KOG0538 consensus 68.7 9.6 0.00025 18.7 9.0 111 88-202 201-313 (363)
389 TIGR00433 bioB biotin synthase 68.5 7.1 0.00018 19.5 3.6 130 76-207 167-337 (350)
390 pfam07722 Peptidase_C26 Peptid 68.1 9.9 0.00025 18.6 4.5 51 102-153 29-83 (219)
391 pfam01964 ThiC ThiC family. Th 68.0 9.9 0.00025 18.6 9.6 186 5-200 60-294 (421)
392 PRK12655 fructose-6-phosphate 67.1 10 0.00026 18.5 16.0 156 51-215 40-209 (220)
393 pfam03102 NeuB NeuB family. Ne 67.0 10 0.00027 18.5 12.6 190 23-221 2-234 (240)
394 PRK06739 pyruvate kinase; Vali 66.6 11 0.00027 18.4 13.2 154 64-223 157-331 (352)
395 PRK06520 5-methyltetrahydropte 66.6 11 0.00027 18.4 11.1 99 17-115 170-299 (370)
396 TIGR02494 PFLE_PFLC glycyl-rad 66.5 4.7 0.00012 20.7 2.4 97 99-218 147-250 (305)
397 cd02922 FCB2_FMN Flavocytochro 66.3 11 0.00027 18.4 9.3 98 102-202 204-306 (344)
398 KOG2335 consensus 66.0 11 0.00028 18.3 10.3 140 62-203 73-239 (358)
399 COG4981 Enoyl reductase domain 65.9 11 0.00028 18.3 8.7 139 63-203 90-259 (717)
400 TIGR01161 purK phosphoribosyla 65.9 11 0.00028 18.3 7.8 113 65-181 44-188 (386)
401 cd00957 Transaldolase_TalAB Tr 65.6 7.9 0.0002 19.2 3.4 150 49-202 79-248 (313)
402 TIGR00583 mre11 DNA repair pro 65.6 11 0.00028 18.3 4.7 38 181-218 33-72 (424)
403 PRK13962 bifunctional phosphog 65.4 11 0.00028 18.3 15.5 183 20-206 421-644 (653)
404 cd00958 DhnA Class I fructose- 65.3 11 0.00029 18.2 16.3 175 15-216 19-233 (235)
405 PRK11858 aksA trans-homoaconit 65.2 11 0.00029 18.2 14.4 167 17-195 26-218 (378)
406 cd00377 ICL_PEPM Members of th 64.8 11 0.00029 18.2 4.1 138 51-203 58-232 (243)
407 cd06589 GH31 The enzymes of gl 64.8 11 0.00029 18.2 5.1 65 52-123 28-92 (265)
408 COG1038 PycA Pyruvate carboxyl 64.4 12 0.0003 18.1 4.3 144 51-199 597-771 (1149)
409 PRK10063 predicted glycosyl tr 64.3 11 0.00028 18.3 3.9 70 15-92 12-89 (248)
410 PRK06846 deaminase; Validated 64.2 12 0.0003 18.1 15.7 182 18-213 115-332 (410)
411 PRK09240 thiH thiamine biosynt 64.1 12 0.0003 18.1 4.8 178 14-200 104-322 (371)
412 COG0826 Collagenase and relate 64.0 12 0.0003 18.1 7.7 123 75-198 82-250 (347)
413 pfam01487 DHquinase_I Type I 3 63.9 12 0.0003 18.1 10.1 120 9-132 2-137 (222)
414 PRK09230 cytosine deaminase; P 63.8 12 0.0003 18.1 14.2 182 19-212 104-333 (426)
415 PRK07535 methyltetrahydrofolat 63.5 12 0.00031 18.0 10.3 177 7-197 15-228 (268)
416 PRK08654 pyruvate carboxylase 63.3 7.6 0.00019 19.3 3.0 128 21-151 16-169 (497)
417 COG3749 Uncharacterized protei 62.9 12 0.00032 18.0 4.8 83 106-197 48-132 (167)
418 COG0074 SucD Succinyl-CoA synt 62.7 13 0.00032 17.9 6.4 58 52-111 55-117 (293)
419 COG0635 HemN Coproporphyrinoge 62.2 12 0.0003 18.1 3.8 174 17-199 69-300 (416)
420 KOG0053 consensus 62.1 13 0.00033 17.9 7.0 131 78-219 109-253 (409)
421 PRK08185 hypothetical protein; 62.1 13 0.00033 17.9 12.4 183 9-201 16-232 (283)
422 PRK13347 coproporphyrinogen II 60.8 14 0.00034 17.7 6.4 153 17-175 85-287 (453)
423 PRK12679 cbl transcriptional r 60.5 14 0.00035 17.7 5.2 139 51-203 109-250 (316)
424 PRK05301 pyrroloquinoline quin 60.5 14 0.00035 17.7 9.5 123 14-145 47-197 (375)
425 PRK08591 acetyl-CoA carboxylas 60.5 14 0.00035 17.7 3.9 79 70-150 85-168 (449)
426 cd00019 AP2Ec AP endonuclease 60.3 14 0.00035 17.7 9.9 201 17-218 10-278 (279)
427 cd06549 GH18_trifunctional GH1 59.7 14 0.00036 17.6 7.1 127 32-158 30-194 (298)
428 cd03310 CIMS_like CIMS - Cobal 59.1 14 0.00037 17.5 12.6 68 17-93 151-229 (321)
429 PRK13479 2-aminoethylphosphona 59.0 15 0.00037 17.5 6.4 24 89-112 136-163 (368)
430 COG1488 PncB Nicotinic acid ph 58.9 15 0.00037 17.5 9.2 98 102-205 224-331 (405)
431 COG1603 RPP1 RNase P/RNase MRP 58.8 15 0.00037 17.5 13.6 138 68-220 4-158 (229)
432 TIGR00742 yjbN TIM-barrel prot 58.7 13 0.00033 17.8 3.5 129 10-138 60-230 (326)
433 PRK13237 tyrosine phenol-lyase 58.5 15 0.00038 17.5 6.3 160 16-187 21-229 (459)
434 TIGR02090 LEU1_arch isopropylm 58.2 15 0.00038 17.5 4.6 140 51-195 51-218 (371)
435 PRK00507 deoxyribose-phosphate 58.2 15 0.00038 17.4 4.4 164 15-199 20-210 (221)
436 cd00423 Pterin_binding Pterin 57.9 15 0.00039 17.4 13.5 145 13-165 20-195 (258)
437 PRK07119 2-ketoisovalerate fer 57.6 15 0.00039 17.4 8.2 61 84-148 244-309 (350)
438 PRK13210 putative L-xylulose 5 57.4 15 0.00039 17.4 6.6 197 17-215 16-272 (284)
439 smart00518 AP2Ec AP endonuclea 56.6 16 0.0004 17.3 11.8 77 19-95 12-107 (273)
440 COG3669 Alpha-L-fucosidase [Ca 56.4 16 0.00041 17.3 4.2 88 20-118 13-122 (430)
441 PRK07178 acetyl-CoA carboxylas 56.4 13 0.00033 17.9 3.1 79 70-150 84-167 (471)
442 cd07205 Pat_PNPLA6_PNPLA7_NTE1 56.3 12 0.00032 17.9 3.1 26 171-196 146-172 (175)
443 PRK05481 lipoyl synthase; Prov 56.1 16 0.00041 17.2 9.1 129 71-203 81-237 (289)
444 PRK12376 putative translaldola 55.8 16 0.00042 17.2 11.8 145 52-204 49-208 (238)
445 pfam04263 TPK_catalytic Thiami 55.8 9 0.00023 18.9 2.3 112 51-176 5-122 (122)
446 cd01570 NAPRTase_A Nicotinate 55.8 16 0.00042 17.2 5.5 52 154-205 260-316 (327)
447 KOG4202 consensus 54.4 17 0.00044 17.1 7.5 124 63-200 92-219 (227)
448 TIGR00875 talC transaldolase, 54.4 17 0.00044 17.1 9.0 176 15-214 6-209 (216)
449 COG0380 OtsA Trehalose-6-phosp 54.3 17 0.00044 17.0 4.1 83 84-175 202-289 (486)
450 PRK09454 ugpQ cytoplasmic glyc 53.8 18 0.00045 17.0 6.3 27 18-44 23-52 (249)
451 PRK05437 isopentenyl pyrophosp 53.7 18 0.00045 17.0 5.1 115 81-201 144-294 (351)
452 TIGR01678 FAD_lactone_ox sugar 53.7 15 0.00039 17.4 3.2 103 88-191 16-124 (505)
453 pfam00724 Oxidored_FMN NADH:fl 53.4 18 0.00046 16.9 9.4 127 81-208 152-327 (336)
454 PRK09432 metF 5,10-methylenete 53.3 18 0.00046 16.9 12.6 109 9-119 31-153 (296)
455 pfam07287 DUF1446 Protein of u 52.5 18 0.00047 16.9 8.7 99 99-204 60-177 (362)
456 cd01989 STK_N The N-terminal d 52.4 19 0.00047 16.9 7.8 42 161-202 70-115 (146)
457 TIGR03326 rubisco_III ribulose 52.3 19 0.00047 16.8 13.0 199 15-218 158-387 (412)
458 KOG0369 consensus 52.1 19 0.00048 16.8 4.5 145 51-196 621-793 (1176)
459 PRK06851 hypothetical protein; 51.8 19 0.00048 16.8 4.7 65 112-183 193-258 (368)
460 cd07228 Pat_NTE_like_bacteria 51.1 19 0.0005 16.7 3.5 26 171-196 146-172 (175)
461 PRK12928 lipoyl synthase; Prov 51.1 19 0.0005 16.7 9.4 130 71-204 89-246 (290)
462 COG1954 GlpP Glycerol-3-phosph 51.1 12 0.00031 18.0 2.3 137 10-196 28-172 (181)
463 KOG3974 consensus 50.6 20 0.0005 16.7 6.5 83 81-176 53-139 (306)
464 TIGR02146 LysS_fung_arch homoc 50.5 20 0.00051 16.7 7.3 161 23-195 26-220 (355)
465 COG1902 NemA NADH:flavin oxido 50.4 20 0.00051 16.6 7.8 124 82-210 159-331 (363)
466 TIGR02855 spore_yabG sporulati 50.1 20 0.00051 16.6 8.1 116 91-207 117-246 (292)
467 cd06593 GH31_xylosidase_YicI Y 49.8 20 0.00052 16.6 5.5 24 15-38 22-47 (308)
468 smart00052 EAL Putative diguan 49.7 20 0.00052 16.6 7.3 100 99-206 135-238 (241)
469 PRK05500 bifunctional orotidin 49.6 21 0.00052 16.6 7.1 99 114-216 118-257 (478)
470 cd02874 GH18_CFLE_spore_hydrol 49.4 21 0.00053 16.6 5.9 120 17-142 17-178 (313)
471 PRK05093 argD bifunctional N-s 49.3 21 0.00053 16.5 7.9 163 36-200 43-255 (403)
472 PRK11449 putative deoxyribonuc 49.1 21 0.00053 16.5 7.2 55 59-116 124-179 (258)
473 COG2513 PrpB PEP phosphonomuta 49.0 21 0.00053 16.5 4.6 149 51-204 67-241 (289)
474 PRK13238 tnaA tryptophanase; P 48.5 21 0.00054 16.5 6.3 65 119-186 159-228 (461)
475 PRK08255 salicylyl-CoA 5-hydro 48.0 22 0.00055 16.4 7.8 120 81-206 565-731 (770)
476 COG4992 ArgD Ornithine/acetylo 47.8 22 0.00056 16.4 9.7 165 35-203 44-258 (404)
477 cd03308 CmuA_CmuC_like CmuA_Cm 47.5 22 0.00056 16.4 8.3 42 149-191 248-291 (378)
478 KOG2672 consensus 47.4 22 0.00056 16.4 5.5 41 72-112 142-190 (360)
479 pfam10566 Glyco_hydro_97 Glyco 47.4 21 0.00054 16.5 3.1 40 158-197 353-398 (643)
480 TIGR00677 fadh2_euk methylenet 47.3 22 0.00057 16.3 3.9 84 99-196 82-192 (312)
481 PRK09249 coproporphyrinogen II 47.0 22 0.00057 16.3 4.2 193 16-214 85-351 (456)
482 TIGR01179 galE UDP-glucose 4-e 46.9 12 0.0003 18.1 1.7 15 140-154 185-201 (341)
483 COG0119 LeuA Isopropylmalate/h 46.7 23 0.00058 16.3 13.2 172 18-196 25-222 (409)
484 TIGR00874 talAB transaldolase; 46.5 12 0.00032 18.0 1.8 69 49-117 83-160 (324)
485 TIGR01513 NAPRTase_put putativ 46.5 23 0.00058 16.3 3.4 101 99-205 236-354 (523)
486 PRK05826 pyruvate kinase; Prov 46.3 23 0.00059 16.2 12.4 145 71-221 172-337 (461)
487 cd06598 GH31_transferase_CtsZ 46.1 23 0.00059 16.2 5.3 24 15-38 22-47 (317)
488 pfam01212 Beta_elim_lyase Beta 45.3 24 0.00061 16.2 7.8 91 122-216 110-225 (288)
489 PRK05678 succinyl-CoA syntheta 45.2 24 0.00061 16.1 4.7 28 9-36 68-95 (289)
490 TIGR02346 chap_CCT_theta T-com 44.8 19 0.00049 16.7 2.5 22 174-197 395-416 (554)
491 PRK08610 fructose-bisphosphate 44.7 24 0.00062 16.1 16.0 184 9-201 21-237 (286)
492 cd07376 PLPDE_III_DSD_D-TA_lik 44.6 24 0.00062 16.1 8.3 171 11-206 44-227 (345)
493 PRK07534 methionine synthase I 44.0 25 0.00064 16.0 7.6 116 78-195 137-276 (335)
494 TIGR00873 gnd 6-phosphoglucona 43.3 26 0.00065 16.0 8.4 120 88-222 24-160 (480)
495 PRK05660 coproporphyrinogen II 43.1 26 0.00066 15.9 3.8 122 76-199 108-267 (378)
496 pfam12617 LdpA_C Iron-Sulfur b 42.9 26 0.00066 15.9 9.2 110 80-190 2-124 (182)
497 PRK05586 biotin carboxylase; V 42.7 26 0.00067 15.9 3.2 79 70-150 85-168 (447)
498 PTZ00187 succinyl-CoA syntheta 42.3 26 0.00067 15.9 5.7 13 84-96 103-115 (309)
499 TIGR02635 RhaI_grampos L-rhamn 42.3 15 0.00037 17.5 1.6 103 17-130 116-228 (382)
500 PRK08223 hypothetical protein; 42.2 27 0.00068 15.9 5.7 29 61-91 95-123 (287)
No 1
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=100.00 E-value=0 Score=561.85 Aligned_cols=209 Identities=47% Similarity=0.825 Sum_probs=203.2
Q ss_pred EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHC-CCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf 8817063258899999999999659989999734263458434178999986412-564168567885120336764047
Q gi|254780975|r 6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY-SDSVFDCHLMISSIDSHINIIADA 84 (224)
Q Consensus 6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~~P~~~i~~~~~~ 84 (224)
+|+||||+|||.+|.+|++.++++|+||+|+|+||||||||+||||..++.||++ |++|+||||||++|++|++.|+++
T Consensus 1 ~iAPSILsADf~rLgee~~~v~~AGaD~iH~DVMDGHFVPNlT~Gp~v~~~~r~~g~~~P~DVHLMv~~pd~~~~~Fa~a 80 (216)
T TIGR01163 1 LIAPSILSADFARLGEEVKAVEEAGADLIHVDVMDGHFVPNLTFGPPVLEALRKYGTKLPIDVHLMVENPDRYIEDFAEA 80 (216)
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 96512555047779999999996699789986247971771002778999887407952126630357857778899970
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 76079997066421589998677649825998523334478998862014028998306776533220135778998654
Q gi|254780975|r 85 GCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKAL 164 (224)
Q Consensus 85 g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~ 164 (224)
|||+|+||+|++.+++|++++||+.|+++||++||+||+|.++++|+++|.||+||||||||||+|+|.+++|||++|++
T Consensus 81 GA~~I~vH~Ea~~h~~R~l~~Ik~~G~~AG~v~NP~TPl~~~~~~L~~~D~VLlMSVnPGFgGQkFIP~~~~Kir~~R~~ 160 (216)
T TIGR01163 81 GADIITVHAEATEHIHRLLQLIKELGAKAGIVLNPATPLEALEYVLEDVDLVLLMSVNPGFGGQKFIPETLEKIRELRKM 160 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 89989984377626799999999718970688679999878998987629899887607998841105789999999999
Q ss_pred HH--CCC--CEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC--CHHHHHHHHH
Q ss_conf 31--386--52698158998899999967998999742663789--9899999999
Q gi|254780975|r 165 IG--KRS--ISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK--GEISYAKRLN 214 (224)
Q Consensus 165 ~~--~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~--d~~~~~~~l~ 214 (224)
++ +.+ +.||||||||.+|+..+.+||||++|+|||||+++ |..+.++.|+
T Consensus 161 id~~~~~~~~~ieVDGGv~~~ni~~~~~AGAD~~VaGSaiF~~~s~d~~~~i~~lr 216 (216)
T TIGR01163 161 IDKLELGLSILIEVDGGVNEDNIAEVAEAGADILVAGSAIFGADSLDYKEAIRSLR 216 (216)
T ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHCC
T ss_conf 98602799558997179897679999975898999831020888668799997339
No 2
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=0 Score=494.43 Aligned_cols=220 Identities=44% Similarity=0.774 Sum_probs=207.9
Q ss_pred CCCCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHC-CCCEEEEEEEEEECCHHHH
Q ss_conf 979818817063258899999999999659989999734263458434178999986412-5641685678851203367
Q gi|254780975|r 1 MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY-SDSVFDCHLMISSIDSHIN 79 (224)
Q Consensus 1 M~k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~~P~~~i~ 79 (224)
|.+ ++|||||+|+||++|++++++++++|+||+|+|||||+||||+||||++++++|+. |++|+||||||++|++|++
T Consensus 1 m~~-~~IspSil~ad~~~L~~ei~~l~~~g~d~iHiDImDG~FVpN~t~g~~~i~~ir~~~~~~plDvHLMv~~P~~~i~ 79 (223)
T PRK08745 1 MQP-TAIAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVP 79 (223)
T ss_pred CCC-CEEEHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHH
T ss_conf 999-7986866515999999999999976999899827679707755709599999996189975377898339899999
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 64047760799970664215899986776498259985233344789988620140289983067765332201357789
Q gi|254780975|r 80 IIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIR 159 (224)
Q Consensus 80 ~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~ 159 (224)
.|.++|+|+|+||+|++.++.+++++||++|+++|+||||+||++.+++|++.+|+||+|||+|||+||+|+|.+++||+
T Consensus 80 ~~~~aGad~i~~H~Ea~~~~~~~i~~ik~~g~k~GlalnP~T~~~~l~~~l~~~D~VliMtV~PGf~GQ~f~~~~l~KI~ 159 (223)
T PRK08745 80 DFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLR 159 (223)
T ss_pred HHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 99973997899960644299999999998398446774699987999998864798999875699887545688999999
Q ss_pred HHHHHHHCC--CCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 986543138--65269815899889999996799899974266378998999999999999786279
Q gi|254780975|r 160 QAKALIGKR--SISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSALAID 224 (224)
Q Consensus 160 ~l~~~~~~~--~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~~a~a~~ 224 (224)
++|+++++. ++.|+||||||.+|++.+.++|||++|+||+||+++|+. +.+++||.+..|+.
T Consensus 160 ~l~~~~~~~~~~~~I~VDGGI~~~ti~~l~~aGad~~V~GSaiF~~~d~~---~~i~~lr~~~~~~~ 223 (223)
T PRK08745 160 AIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYA---QVIAQMRAAVAAVR 223 (223)
T ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHH---HHHHHHHHHHHHCC
T ss_conf 99999986499945999788798999999986999999741775799999---99999999998659
No 3
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=100.00 E-value=0 Score=492.79 Aligned_cols=214 Identities=46% Similarity=0.759 Sum_probs=204.8
Q ss_pred CCCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHH
Q ss_conf 79818817063258899999999999659989999734263458434178999986412564168567885120336764
Q gi|254780975|r 2 TPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINII 81 (224)
Q Consensus 2 ~k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~ 81 (224)
+|+++|||||+|+|+.+|++++++++++|+||+|+|||||+||||+|||++++++||++|++|+||||||++|++|+++|
T Consensus 1 m~~~~IspSil~ad~~~l~~~i~~l~~~g~~~lHiDImDG~FVpn~t~g~~~v~~i~~~t~~~~DvHLMv~~P~~~i~~~ 80 (220)
T PRK05581 1 MKMVLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDF 80 (220)
T ss_pred CCCCEEEHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECHHHHHHHH
T ss_conf 99759868774079999999999999769998999575784477556399999999841899647899971888879999
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 04776079997066421589998677649825998523334478998862014028998306776533220135778998
Q gi|254780975|r 82 ADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQA 161 (224)
Q Consensus 82 ~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l 161 (224)
.++|+|+|+||+|+++++.+++++||++|+++||||||+||++.+++|++.+|+||+|||+|||+||+|++.+++||+++
T Consensus 81 ~~~g~d~I~~H~Ea~~~~~~~i~~ik~~g~k~Glalnp~T~~~~l~~~l~~iD~VlvMtV~PGf~GQ~f~~~~l~ki~~l 160 (220)
T PRK05581 81 AKAGADIITFHVEASEHIHRLLQLIKEAGIKAGLVLNPATPLEYLEYVLPLLDLVLLMSVNPGFGGQKFIPEVLEKIREV 160 (220)
T ss_pred HHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 97399889981675027999999999749970467669999899999987415258998658878764556699999999
Q ss_pred HHHHHCCC--CEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
Q ss_conf 65431386--5269815899889999996799899974266378998999999999
Q gi|254780975|r 162 KALIGKRS--ISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLND 215 (224)
Q Consensus 162 ~~~~~~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~ 215 (224)
|+++.+++ +.|+||||||.+|++.+.++|||++|+||+||+++|+.+.+++|++
T Consensus 161 ~~~~~~~~~~~~I~VDGGIn~~~i~~l~~~Gad~~V~GS~iF~~~d~~~~i~~lk~ 216 (220)
T PRK05581 161 RKLIDERGLDILIEVDGGVNAENIKECAEAGADVFVAGSAVFGAPDYKEAIDELRA 216 (220)
T ss_pred HHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
T ss_conf 99998459975599978989899999997799999979488579999999999999
No 4
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=0 Score=492.99 Aligned_cols=215 Identities=47% Similarity=0.826 Sum_probs=204.0
Q ss_pred CCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHC
Q ss_conf 98188170632588999999999996599899997342634584341789999864125641685678851203367640
Q gi|254780975|r 3 PSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIA 82 (224)
Q Consensus 3 k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~ 82 (224)
++++|+|||||+||.+|++++++++++|+||+|+||||||||||+||||+.++++|+.|++|+||||||++|++|++.|+
T Consensus 2 ~~~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa 81 (220)
T COG0036 2 KMMKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFA 81 (220)
T ss_pred CCCEEEEEHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
T ss_conf 97466415642777679999999997699879996457876787334899999886368973589973289899999999
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 47760799970664215899986776498259985233344789988620140289983067765332201357789986
Q gi|254780975|r 83 DAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAK 162 (224)
Q Consensus 83 ~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~ 162 (224)
++|+|+|+||+|++.++.+++++||+.|+++|++|||+||++.++++++++|+||+|||+|||+||+|++.+++||+++|
T Consensus 82 ~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr 161 (220)
T COG0036 82 KAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELR 161 (220)
T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 81999899971277689999999997598577997899977899989865789999857799866314799999999999
Q ss_pred HHHHCC-CCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
Q ss_conf 543138-6526981589988999999679989997426637899899999999999
Q gi|254780975|r 163 ALIGKR-SISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLK 217 (224)
Q Consensus 163 ~~~~~~-~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~ 217 (224)
++++++ ++.|+||||||.+|++.+.++|||++|+||++|+++|..+..+.++.+.
T Consensus 162 ~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~~~ 217 (220)
T COG0036 162 AMIDERLDILIEVDGGINLETIKQLAAAGADVFVAGSALFGADDYKATIRELRGEL 217 (220)
T ss_pred HHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 97402477599996896988899999739999999777867811999999999876
No 5
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=100.00 E-value=0 Score=489.73 Aligned_cols=210 Identities=30% Similarity=0.459 Sum_probs=203.4
Q ss_pred EEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf 18817063258899999999999659989999734263458434178999986412564168567885120336764047
Q gi|254780975|r 5 IQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADA 84 (224)
Q Consensus 5 ~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ 84 (224)
|+|||||+|+|+++|++++++++++|+||+|+|||||+||||+||||++++++|++|+.|+||||||++|++|+++|.++
T Consensus 1 m~IsPSil~ad~~~L~~ei~~l~~~g~d~lHiDIMDG~FVPNitfg~~~v~~ir~~t~~p~DvHLMv~~P~~~i~~~~~~ 80 (210)
T PRK08005 1 MILHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQYTRHPLSFHLMVSSPQRWLPWLAAI 80 (210)
T ss_pred CEEEHHHHHHCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHC
T ss_conf 98865565448999999999999779998998288898277456298999999861899807999868889999999972
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 76079997066421589998677649825998523334478998862014028998306776533220135778998654
Q gi|254780975|r 85 GCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKAL 164 (224)
Q Consensus 85 g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~ 164 (224)
|+|+|+||+|++.++.++++.||++|+++||||||+||++.+++|++.+|+||+|||+|||+||+|++.+++||+++|+.
T Consensus 81 g~d~it~H~Ea~~~~~~~i~~Ik~~g~k~GlAlnP~T~i~~~~~~l~~vD~VLvMtV~PGf~GQ~Fi~~~~~KI~~~r~~ 160 (210)
T PRK08005 81 RPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREH 160 (210)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99859993567769999999999749807888379998799873040079899987789998721178899999999962
Q ss_pred HHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf 3138652698158998899999967998999742663789989999999999
Q gi|254780975|r 165 IGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 165 ~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l 216 (224)
+++ ..|+||||||.+|++.+.++|||++|+||++|+++|+.+++.+++.|
T Consensus 161 ~~~--~~I~vDGGIn~~t~~~~~~aGad~~V~GSaiF~~~d~~~~i~~lr~l 210 (210)
T PRK08005 161 FPA--AECWADGGITLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQFTAL 210 (210)
T ss_pred CCC--CCEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHCC
T ss_conf 877--88899788788999999986999999790653699999999998639
No 6
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=100.00 E-value=0 Score=490.23 Aligned_cols=216 Identities=23% Similarity=0.427 Sum_probs=205.3
Q ss_pred CCCCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHH
Q ss_conf 97981881706325889999999999965998999973426345843417899998641256416856788512033676
Q gi|254780975|r 1 MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINI 80 (224)
Q Consensus 1 M~k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~ 80 (224)
|+|+.||||||||+||++|++++++++++|+||+|+||||||||||+||||+.+++++ ++.++||||||++|++|++.
T Consensus 9 ~m~~~kIspSIL~aD~~~L~~ei~~l~~~g~d~lHiDIMDG~FVPNitfg~~~v~~l~--~~~~~DvHLMV~~P~~~i~~ 86 (235)
T PRK08091 9 LLKSQPLSVGILAGQWLALHRYLQQLEALNQPLLHFDIMDGQFSPQFTVGPWAVGQFP--QTFIKDVHLMVADQWTVAKA 86 (235)
T ss_pred HHHCCCEEHHHHHHCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHC--CCCCCCEEEEECCHHHHHHH
T ss_conf 8523753599875189999999999997799999981858876784322899999737--49997266433888999999
Q ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHC---------CCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCC
Q ss_conf 40477607999706642158999867764---------982599852333447899886201402899830677653322
Q gi|254780975|r 81 IADAGCDIITFHPESSPHIRRSLRTIHAM---------GKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLI 151 (224)
Q Consensus 81 ~~~~g~d~i~~H~E~~~~~~~~i~~i~~~---------g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~ 151 (224)
|.++|+|+|+||+|++.++.+++++||+. |+++||||||+||++.+++|++.+|+||+|||+|||+||+|+
T Consensus 87 ~~~aGad~it~H~Ea~~~~~~~i~~i~~~~~~~~~~~~~~~~GlAlnP~Tpve~l~~~L~~vD~VLvMtV~PGfgGQ~fi 166 (235)
T PRK08091 87 CVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVLRGISLCPATPLDVLIPYLSDVDVIQLLTLDPRYGSKMRS 166 (235)
T ss_pred HHHCCCCEEEECCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCC
T ss_conf 99759989997545555889999999983420222220750138979999889999987053999998766898888678
Q ss_pred CHHHHHHHHHHHHHHCCCC--EEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 0135778998654313865--269815899889999996799899974266378998999999999999
Q gi|254780975|r 152 ESTIPKIRQAKALIGKRSI--SLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK 218 (224)
Q Consensus 152 ~~~l~kI~~l~~~~~~~~~--~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~ 218 (224)
+++++||+++|+++++++. .|+||||||.+|++.+.++|||++|+||++|+++|+.+.++++++|.|
T Consensus 167 ~~~l~KI~~l~~~~~~~~~~~~I~VDGGI~~~ti~~~~~aGad~~V~GS~iF~~~d~~e~i~~lk~l~~ 235 (235)
T PRK08091 167 SDLHERVAQLLCLLGDKREGKLIVIDGSMTQDQLPSLIAQGIDWVVSGSALFSDDRLVENLRSWKAMFK 235 (235)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHCCCCCHHHHHHHHHHHHC
T ss_conf 789999999999999649991599848989888999998399999978243379999999999998529
No 7
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=0 Score=484.50 Aligned_cols=208 Identities=46% Similarity=0.820 Sum_probs=201.4
Q ss_pred ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHC-CCCEEEEEEEEEECCHHHHHHCCCC
Q ss_conf 817063258899999999999659989999734263458434178999986412-5641685678851203367640477
Q gi|254780975|r 7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY-SDSVFDCHLMISSIDSHINIIADAG 85 (224)
Q Consensus 7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~~P~~~i~~~~~~g 85 (224)
|||||+|+|+.+|++++++++++|+||+|+|||||+||||+|||+++++++|++ |+.|+||||||++|++|+++|.++|
T Consensus 2 IspSil~ad~~~L~~ei~~l~~~g~d~lHiDIMDG~FVPNitfg~~~v~~ir~~~t~~~~DvHLMv~~P~~~i~~~~~aG 81 (220)
T PRK08883 2 IAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAG 81 (220)
T ss_pred EEHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCC
T ss_conf 50776432999999999999976999899817789858865669899999996589987578998338888899999759
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 60799970664215899986776498259985233344789988620140289983067765332201357789986543
Q gi|254780975|r 86 CDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALI 165 (224)
Q Consensus 86 ~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~ 165 (224)
+|+|+||+|+++++.+++++||++|+++|+||||+||++.+++|++.+|+||+|||+|||+||+|++.+++||+++|+++
T Consensus 82 ad~I~~H~Ea~~~~~~~i~~Ik~~g~k~GlalnP~T~~~~l~~~l~~~D~VLvMtV~PGf~GQ~f~~~~l~Ki~~l~~~~ 161 (220)
T PRK08883 82 ASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLAHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMI 161 (220)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98899857765499999999998599668884799987999999974697999874589887545577999999999988
Q ss_pred HCCC--CEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
Q ss_conf 1386--526981589988999999679989997426637899899999999
Q gi|254780975|r 166 GKRS--ISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLN 214 (224)
Q Consensus 166 ~~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~ 214 (224)
++++ +.|+||||||.+|++.+.++|||++|+||++|+++|+.+.+++++
T Consensus 162 ~~~~~~~~I~VDGGI~~~ti~~l~~aGad~~V~GS~iF~~~d~~~~i~~lr 212 (220)
T PRK08883 162 DASGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMR 212 (220)
T ss_pred HHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
T ss_conf 744998079998987899999999879999996826748999999999999
No 8
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=0 Score=481.46 Aligned_cols=215 Identities=34% Similarity=0.604 Sum_probs=197.8
Q ss_pred EEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf 18817063258899999999999659989999734263458434178999986412564168567885120336764047
Q gi|254780975|r 5 IQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADA 84 (224)
Q Consensus 5 ~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ 84 (224)
|||||||||+|+.+|+++++.++ .++||+|+|||||+||||+||||++++.+|++|++|+||||||++|++|+++|.++
T Consensus 1 ~kI~PSil~aD~~~L~~~i~~~~-~~~d~iHiDIMDG~FVPN~tfgp~~v~~ir~~t~~p~DvHLMv~~P~~~i~~~~~~ 79 (227)
T PRK09722 1 MKISPSLMCMDLLKFKEQIEFLD-SKADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPLDCHLMVTRPQDYIAQLADA 79 (227)
T ss_pred CEEEHHHHHCCHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHC
T ss_conf 98768676308999999999997-48988999561686078545186599999744899647899965888889999854
Q ss_pred CCCEEEEECCCC-CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 760799970664-2158999867764982599852333447899886201402899830677653322013577899865
Q gi|254780975|r 85 GCDIITFHPESS-PHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKA 163 (224)
Q Consensus 85 g~d~i~~H~E~~-~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~ 163 (224)
|+|+|+||+|+. .++.+++++||+.|+++||||||+||++.+++|++++|+||+|||+|||+||+|++++++||+++|+
T Consensus 80 gad~It~H~Ea~~~~~~~~i~~Ik~~g~k~GlAlnP~Tpi~~i~~~l~~vD~VLvMsV~PGf~GQ~Fi~~~l~KI~~lr~ 159 (227)
T PRK09722 80 GADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVEAIKYYIHLADKVTVMTVDPGFAGQPFIPEMLDKIAELKA 159 (227)
T ss_pred CCCEEEECHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99899956565056599999999986997223338999866887667437989999888999876566889999999999
Q ss_pred HHHCCC--CEEEEECCCCHHHHHHHHHCCCCEEEEC-HHHHCCCCHH-HHHHHHHHHHHHH
Q ss_conf 431386--5269815899889999996799899974-2663789989-9999999999978
Q gi|254780975|r 164 LIGKRS--ISLEVDGGVTSRNIKSLVQAGADLLVVG-SSFFNQKGEI-SYAKRLNDLKKSA 220 (224)
Q Consensus 164 ~~~~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~G-saif~~~d~~-~~~~~l~~l~~~a 220 (224)
++++++ +.|+||||||.+|++.+.++|||++|+| |+||++++.. +..+.++.-.++|
T Consensus 160 ~~~~~~~~~~I~VDGGI~~~~i~~~~~aGAd~~V~GssaiF~~~~~i~~~~~~l~~~~~~~ 220 (227)
T PRK09722 160 WREREGLEYEIEVDGSCNQKTYEKLMAAGADVFIVGTSGLFNHAENIDEAWDIMTAQILAA 220 (227)
T ss_pred HHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9982599826999898889999999986999999774897489999999999999999998
No 9
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=0 Score=480.23 Aligned_cols=211 Identities=40% Similarity=0.698 Sum_probs=197.6
Q ss_pred CCEEECHHHHCCCHHHHHHHHHHHHH---CCCCEEEEEEECCEECCCCCCCHHHHHHHHHCC-CCEEEEEEEEEECCHHH
Q ss_conf 98188170632588999999999996---599899997342634584341789999864125-64168567885120336
Q gi|254780975|r 3 PSIQIVPSILAADFSRLGEEISNITK---AGAKQIHFDVMDGCFVPNISFGADVIRSLRSYS-DSVFDCHLMISSIDSHI 78 (224)
Q Consensus 3 k~~~IspSil~~d~~~l~~~i~~l~~---~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t-~~~~dvHLMv~~P~~~i 78 (224)
|++ |||||+|||+++|+++++++++ +|+||+|+|||||+||||+||||++++++|+++ +.|+||||||++|++|+
T Consensus 1 ~~~-I~pSil~aD~~~L~~ei~~~~~~~~~g~d~lHiDImDG~FVpN~t~g~~~v~~ir~~~~~~~lDvHLMv~~P~~~i 79 (224)
T PTZ00170 1 KPI-IAPSILAADFTKLLDESQDVLSPEGGGADWLHVDVMDGHFVPNLSFGPPVVSSLRKHLPNTFLDVHLMVSDPERWV 79 (224)
T ss_pred CCE-EEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHHH
T ss_conf 976-6487766469999999999986340599789994405850776574978999999717998646899863888879
Q ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH--CCEEEEEEEECCCCCCCCCCHHHH
Q ss_conf 764047760799970664215899986776498259985233344789988620--140289983067765332201357
Q gi|254780975|r 79 NIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDE--IDMILIMTVNPGFGGQQLIESTIP 156 (224)
Q Consensus 79 ~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~--~D~vliM~V~PG~~Gq~f~~~~l~ 156 (224)
++|.++|+|+|+||+|++.++.+++++||++|+++||||||+||++.+++|++. +|+||+|||+|||+||+|++.+++
T Consensus 80 ~~~~~~gad~I~~H~E~~~~~~~~i~~ik~~g~k~GlAlnP~T~i~~l~~~l~~~~iD~VLlMsV~PGf~GQ~Fi~~~l~ 159 (224)
T PTZ00170 80 DSFAKAGASQFTFHIEATEDPKAVARKIRAAGMQVGVALKPKTPAEELFPLIDAGLVDMVLVMTVEPGFGGQSFMHDMMP 159 (224)
T ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHH
T ss_conf 99986289679985001339999999999714764556079998799999971144578999855699876214588999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf 789986543138652698158998899999967998999742663789989999999999
Q gi|254780975|r 157 KIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 157 kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l 216 (224)
||+++|+.++ ++.|+||||||.+|++.+.++|||++|+||++|+++|+.+++++|++-
T Consensus 160 KI~~lr~~~~--~~~I~VDGGIn~~ti~~l~~aGad~~V~GSaiF~~~d~~~~i~~lr~~ 217 (224)
T PTZ00170 160 KVRQLRQRYP--HLNIQVDGGINPDTIDLAAEAGANVIVAGTSIFKANDRKESIETLRRS 217 (224)
T ss_pred HHHHHHHCCC--CCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
T ss_conf 9999985489--975999589998999999986999999785886799999999999999
No 10
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=100.00 E-value=0 Score=477.67 Aligned_cols=208 Identities=48% Similarity=0.839 Sum_probs=201.8
Q ss_pred EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCC
Q ss_conf 88170632588999999999996599899997342634584341789999864125641685678851203367640477
Q gi|254780975|r 6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAG 85 (224)
Q Consensus 6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g 85 (224)
+|||||+|+|+.+|++++++++++|+||+|+|||||+||||+|||++.+++||++|++|+||||||++|++|+++|.++|
T Consensus 1 ~IspSil~ad~~~l~~~i~~~~~~g~d~lHiDimDG~Fvpn~t~g~~~v~~i~~~t~~~~DvHLMv~~P~~~i~~~~~~g 80 (211)
T cd00429 1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAG 80 (211)
T ss_pred CEEHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHC
T ss_conf 91573531799999999999997699989995757972786675989999998757997058998718877699999709
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 60799970664215899986776498259985233344789988620140289983067765332201357789986543
Q gi|254780975|r 86 CDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALI 165 (224)
Q Consensus 86 ~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~ 165 (224)
+|+|+||+|++.++.+++++||++|+++|||+||+||++.+++|++.+|+||+|||+|||+||+|++++++||+++|+++
T Consensus 81 ~d~I~~H~E~~~~~~~~i~~ik~~g~~~Glal~p~T~~~~l~~~l~~~D~vliMtV~PGf~GQ~f~~~~~~ki~~l~~~~ 160 (211)
T cd00429 81 ADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELI 160 (211)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98899864322089999999997398723575489998999999975152279874688788754567999999999999
Q ss_pred HCC--CCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf 138--652698158998899999967998999742663789989999999
Q gi|254780975|r 166 GKR--SISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL 213 (224)
Q Consensus 166 ~~~--~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l 213 (224)
++. ++.|+||||||.+|++++.++|||++|+||++|+++|+.++++++
T Consensus 161 ~~~~~~~~I~vDGGI~~~~i~~l~~~Gad~~V~GS~iF~~~d~~~~i~~l 210 (211)
T cd00429 161 PENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
T ss_conf 86499859999678598999999985999999793775899999999971
No 11
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=100.00 E-value=0 Score=479.09 Aligned_cols=199 Identities=46% Similarity=0.827 Sum_probs=195.0
Q ss_pred EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCC
Q ss_conf 88170632588999999999996599899997342634584341789999864125641685678851203367640477
Q gi|254780975|r 6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAG 85 (224)
Q Consensus 6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g 85 (224)
||||||+|+|+++|++++++++++|+||+|+|||||+||||+|||+++++++|++|++|+||||||++|++|+++|.++|
T Consensus 1 kIspSil~ad~~~l~~~i~~l~~~g~d~iHiDimDG~FVpn~t~g~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~~g 80 (201)
T pfam00834 1 KIAPSLLSADFAHLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPLTELPLDVHLMVEEPDRIIPDFAEAG 80 (201)
T ss_pred CEEHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHCC
T ss_conf 91565741689999999999997699989982767972775555877999998638996389999837766399998739
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 60799970664215899986776498259985233344789988620140289983067765332201357789986543
Q gi|254780975|r 86 CDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALI 165 (224)
Q Consensus 86 ~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~ 165 (224)
+|+|+||+|+++++.+++++||++|+++||||||+||++.+++|++++|+||+|||+|||+||+|++.+++||+++|+++
T Consensus 81 ~d~i~~H~E~~~~~~~~i~~ik~~g~k~GlAlnP~T~~~~l~~~l~~iD~VLvMtV~PGf~GQ~f~~~~l~KI~~lr~~~ 160 (201)
T pfam00834 81 ADIISFHAEASDHPHRTIQLIKEAGAKAGLVLNPATPLDAIEYLLDDLDLVLLMSVNPGFGGQSFIPSVLPKIRKVRKMI 160 (201)
T ss_pred CCEEEECHHHHHCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98899754441379999999986497268885699860288876742798999886689887645677999999999999
Q ss_pred HCCC--CEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 1386--52698158998899999967998999742663789
Q gi|254780975|r 166 GKRS--ISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 166 ~~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
++++ +.|+||||||.+|++.+.++|||++|+||++|++|
T Consensus 161 ~~~~~~~~I~vDGGIn~~ti~~l~~~Gad~~V~GSaiF~sp 201 (201)
T pfam00834 161 DEGGLDTLIEVDGGVNLDNIPQIAEAGADVLVAGSAVFGAP 201 (201)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCEECCCC
T ss_conf 82699807999898889999999987999999780024598
No 12
>KOG3111 consensus
Probab=100.00 E-value=0 Score=438.53 Aligned_cols=217 Identities=38% Similarity=0.670 Sum_probs=205.3
Q ss_pred CCCCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCE--EEEEEEEEECCHHH
Q ss_conf 9798188170632588999999999996599899997342634584341789999864125641--68567885120336
Q gi|254780975|r 1 MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSV--FDCHLMISSIDSHI 78 (224)
Q Consensus 1 M~k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~--~dvHLMv~~P~~~i 78 (224)
|.-+.+|+||||++|+.||+.|.+++..+|+||||+|+||||||||+|||+..++++|+.+..+ +|+||||.+|++|+
T Consensus 1 ~~~~~~I~pSIL~~dfanL~~E~~~~~~~GadwlHlDVMDg~FVpNiT~G~pvV~slr~~~~~~~ffD~HmMV~~Peq~v 80 (224)
T KOG3111 1 MMVKPKIAPSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWV 80 (224)
T ss_pred CCCCCEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCHHHHH
T ss_conf 98676325366513067899999999974987587860147104774336188999985258885236787646988876
Q ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 76404776079997066421589998677649825998523334478998862014028998306776533220135778
Q gi|254780975|r 79 NIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKI 158 (224)
Q Consensus 79 ~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI 158 (224)
++++++|++.+|||+|++.++.+++++||+.|+++|+||+|+||++.++++++.+|++|+|||+|||+||+|.|+++.|+
T Consensus 81 ~~~a~agas~~tfH~E~~q~~~~lv~~ir~~gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV 160 (224)
T KOG3111 81 DQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKV 160 (224)
T ss_pred HHHHHCCCCEEEEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 79986477569998643257899999999749756687489995899997641025799998548975045789998999
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 9986543138652698158998899999967998999742663789989999999999997
Q gi|254780975|r 159 RQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKS 219 (224)
Q Consensus 159 ~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~~ 219 (224)
+.+|+.++ +..|+||||+..+|+..+.++|||.+|+||++|++.|+.+.++-|++-...
T Consensus 161 ~~lR~kyp--~l~ieVDGGv~p~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~ 219 (224)
T KOG3111 161 EWLREKYP--NLDIEVDGGVGPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEK 219 (224)
T ss_pred HHHHHHCC--CCEEEECCCCCCCHHHHHHHCCCCEEEECCEEECCCCHHHHHHHHHHHHHH
T ss_conf 99998689--843885488682137799875888798633345279989999999999866
No 13
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=99.68 E-value=1e-14 Score=114.31 Aligned_cols=196 Identities=18% Similarity=0.284 Sum_probs=145.4
Q ss_pred HCCCHHHHHHHHHHHHHC--CCCEEEEEEECCEECCC-CCCCHHHHHHHHH-CCCCEEEEEEEEEE-CCHHHHHHCCCCC
Q ss_conf 325889999999999965--99899997342634584-3417899998641-25641685678851-2033676404776
Q gi|254780975|r 12 LAADFSRLGEEISNITKA--GAKQIHFDVMDGCFVPN-ISFGADVIRSLRS-YSDSVFDCHLMISS-IDSHINIIADAGC 86 (224)
Q Consensus 12 l~~d~~~l~~~i~~l~~~--~~d~iHiDImDg~fvpn-~~~~~~~i~~i~~-~t~~~~dvHLMv~~-P~~~i~~~~~~g~ 86 (224)
++.|..++++.++.+++. +++|+-+ |. |- .+.|++.++.+|+ .++.++=+.|-+-| +..-.+...++|+
T Consensus 4 vALD~~~~~~A~~i~~~~~~~v~~ikv----G~--~L~~~~G~~~v~~lk~~~p~~~I~~DlK~~D~g~~~~~~~~~~Ga 77 (206)
T TIGR03128 4 LALDLLDIEEALELAEKVADYVDIIEI----GT--PLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGA 77 (206)
T ss_pred EEECCCCHHHHHHHHHHHCCCCCEEEE----CC--HHHHHHCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHCCC
T ss_conf 995799999999999970355629998----96--999976899999999878999799995044743899999997289
Q ss_pred CEEEEECCCCCC-HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 079997066421-5899986776498259985233344789988620140289983067765332201357789986543
Q gi|254780975|r 87 DIITFHPESSPH-IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALI 165 (224)
Q Consensus 87 d~i~~H~E~~~~-~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~ 165 (224)
|++|+|.-+... +....+..++.|.+..+.+...+.+....+.+..+. +-.+++..|+..|.......+.+..+++..
T Consensus 78 d~itVh~~~~~~ti~~a~~~a~~~~~~v~vdl~~~~~~~~~a~~~~~~g-~d~v~~h~g~d~~~~~~~~~~~~~~~~~~~ 156 (206)
T TIGR03128 78 DIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELG-ADYIGVHTGLDEQAKGQNPFEDLQTILKLV 156 (206)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCC-CCEEEEECCCCHHHCCCCCHHHHHHHHHCC
T ss_conf 8999943489799999999999739979999747898899999999758-988995025004432679889999998625
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf 138652698158998899999967998999742663789989999999999
Q gi|254780975|r 166 GKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 166 ~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l 216 (224)
. +..+.++||++.+|.+.+.++|||.+|+|++|++++||.+++++|++.
T Consensus 157 ~--~~~i~v~gGi~~~t~~~ai~~Gad~vVVGR~It~A~dP~~aa~~i~e~ 205 (206)
T TIGR03128 157 K--EARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred C--CCCEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 7--873636798683569999866999999896124799999999999974
No 14
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=99.66 E-value=5.7e-14 Score=109.60 Aligned_cols=197 Identities=23% Similarity=0.374 Sum_probs=154.1
Q ss_pred HCCCHHHHHHHHHHHHH---CCCCEEEEEEECCEECCCC-CCCHHHHHHHHH-CCCCEEEEEEEEEECCHH-HHHHCCCC
Q ss_conf 32588999999999996---5998999973426345843-417899998641-256416856788512033-67640477
Q gi|254780975|r 12 LAADFSRLGEEISNITK---AGAKQIHFDVMDGCFVPNI-SFGADVIRSLRS-YSDSVFDCHLMISSIDSH-INIIADAG 85 (224)
Q Consensus 12 l~~d~~~l~~~i~~l~~---~~~d~iHiDImDg~fvpn~-~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~-i~~~~~~g 85 (224)
++.|+.+|.+.++...+ .++||+.+ |+ |-+ +.|.+-++.+|+ +++.++=+.|-+.+--.| .+...++|
T Consensus 8 vALD~~~l~~A~~ia~e~v~~~~diiE~----GT--PLIk~eG~~aV~~lr~~fP~~~ivAD~KtmDaG~~Ea~~A~~AG 81 (429)
T PRK07028 8 VALDLLELDRAIEIAKEAVAGGADWIEA----GT--PLIKSEGMNAIRTLRKNFPDLTIVADMKTMDTGAMEVEMAAKAG 81 (429)
T ss_pred EEECCCCHHHHHHHHHHHHHCCCCEEEE----CC--HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHCC
T ss_conf 6542488899999999874158759991----76--88886418999999987899869887640455088999998769
Q ss_pred CCEEEEECCCCCC-HHHHHHHHHHCCCEEEEE-EECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 6079997066421-589998677649825998-523334478998862-0140289983067765332201357789986
Q gi|254780975|r 86 CDIITFHPESSPH-IRRSLRTIHAMGKKTGVA-INPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAK 162 (224)
Q Consensus 86 ~d~i~~H~E~~~~-~~~~i~~i~~~g~k~Gia-i~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~ 162 (224)
+|++|+---+... +...++..+++|+++-+- ||-..+.+..+.+-. -+|+|.+.+ |..-|.--...++-+++++
T Consensus 82 ADivtVlG~a~d~TI~~aV~aA~k~G~~v~vDlI~v~d~~~ra~el~~lGvd~I~vH~---G~D~Q~~g~~p~~~l~~v~ 158 (429)
T PRK07028 82 ADVVCILGVADDSTIADAVRAARKYGVLVMADLINVPDPVKRAVELEELGVDIINVHV---GIDQQMLGKDPLELLKKVS 158 (429)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEE---EECHHHCCCCHHHHHHHHH
T ss_conf 9889994578836999999999970988999855899889999999970998899976---2335531798499999999
Q ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 5431386526981589988999999679989997426637899899999999999978
Q gi|254780975|r 163 ALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSA 220 (224)
Q Consensus 163 ~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~~a 220 (224)
+. .+..+.|-||||.+|++.+.++|||++|+|++|.+++||.++++++++-..+.
T Consensus 159 ~~---~~~~vAVAGGi~~~t~~~~v~~GAdIvIVGgaI~~a~dp~~aAr~ir~ai~~~ 213 (429)
T PRK07028 159 EE---VSIPIAAAGGLDAETAVKAVEAGADIVIVGGNIYKSADVTGAARDIREALDSP 213 (429)
T ss_pred HH---CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 75---59718996687877699999759989998940057999799999999997376
No 15
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.62 E-value=8.4e-14 Score=108.52 Aligned_cols=197 Identities=17% Similarity=0.280 Sum_probs=149.2
Q ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEEEEC-CEECCC-CCCCHHHHHHHHH-CCCCEEEEEEEEEECCH-HHHHHCCCCCC
Q ss_conf 32588999999999996599899997342-634584-3417899998641-25641685678851203-36764047760
Q gi|254780975|r 12 LAADFSRLGEEISNITKAGAKQIHFDVMD-GCFVPN-ISFGADVIRSLRS-YSDSVFDCHLMISSIDS-HINIIADAGCD 87 (224)
Q Consensus 12 l~~d~~~l~~~i~~l~~~~~d~iHiDImD-g~fvpn-~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~-~i~~~~~~g~d 87 (224)
++.|..++++.++.+++. .++ +|+.- |. |= .+.|++.++.+|+ +++.++=+.|-+.|--+ -.+...++|+|
T Consensus 8 vALD~~~l~~Al~ia~~~-~~~--vdiiEvGt--pLi~~~G~~~V~~lr~~~p~k~I~aDlK~~D~g~~ea~~a~~aGAd 82 (216)
T PRK13306 8 VALDNQDLDSALEDAKKV-AEE--VDIIEVGT--ILCLAEGMKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGAD 82 (216)
T ss_pred EEECCCCHHHHHHHHHHH-HCC--CCEEEECC--HHHHHHCHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHCCCC
T ss_conf 986789999999999972-322--89999685--9999858999999998789997999753236538999999972898
Q ss_pred EEEEECCCCCC-HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH-CCEEEEE-EEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 79997066421-5899986776498259985233344789988620-1402899-8306776533220135778998654
Q gi|254780975|r 88 IITFHPESSPH-IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDE-IDMILIM-TVNPGFGGQQLIESTIPKIRQAKAL 164 (224)
Q Consensus 88 ~i~~H~E~~~~-~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~-~D~vliM-~V~PG~~Gq~f~~~~l~kI~~l~~~ 164 (224)
++++|.-+... +...++..++.|.++-+-+-.....+....+.+. ++.+.+. +.+-+.+|+.+.+.-+++++++..
T Consensus 83 ~vtV~g~a~~~Ti~~~~~~A~~~g~~v~vdl~~~~~~e~a~~~~~lgv~~~i~H~~~D~~~~g~~~~~~~~~~ik~l~~- 161 (216)
T PRK13306 83 WVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDAGIQQVIYHRSRDAELAGVAWGEKDLNKVKKLSD- 161 (216)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCHHHHHHHHHHHC-
T ss_conf 8999566897999999999998098369997378778889999976998788760322442467888778999999763-
Q ss_pred HHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
Q ss_conf 31386526981589988999999679989997426637899899999999999
Q gi|254780975|r 165 IGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLK 217 (224)
Q Consensus 165 ~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~ 217 (224)
.++.+.|-|||+.++++.+.+.|++++|+|++|.+++||.++++.+++--
T Consensus 162 ---~~~~vaVaGGI~~~~~~~~~~~~~~ivIVGraIt~a~dP~~aA~~i~~~I 211 (216)
T PRK13306 162 ---MGFKVSVTGGIVPEDLKLFKGIPIKTFIAGRAIRGAKDPAEAARAFKDEI 211 (216)
T ss_pred ---CCCEEEECCCCCHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf ---69829985998989999986279989998852358999999999999999
No 16
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.59 E-value=3.3e-13 Score=104.69 Aligned_cols=197 Identities=13% Similarity=0.223 Sum_probs=151.0
Q ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEEEEC-CEECCC-CCCCHHHHHHHHH-CCCCEEEEEEEEEECCHH-HHHHCCCCCC
Q ss_conf 32588999999999996599899997342-634584-3417899998641-256416856788512033-6764047760
Q gi|254780975|r 12 LAADFSRLGEEISNITKAGAKQIHFDVMD-GCFVPN-ISFGADVIRSLRS-YSDSVFDCHLMISSIDSH-INIIADAGCD 87 (224)
Q Consensus 12 l~~d~~~l~~~i~~l~~~~~d~iHiDImD-g~fvpn-~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~-i~~~~~~g~d 87 (224)
++.|..+|++.++.+++. .+ |+||.- |+ |= ..+|.+.++.+|+ +++..+=..+-+.|--.| .+...++|+|
T Consensus 8 vALD~~~l~~A~~~a~~v-~~--~vDIIE~GT--pLik~~G~~aV~~lr~~~P~~~IvAD~Kt~DaG~~Ea~~a~~aGAD 82 (220)
T PRK13305 8 LALDHTSLEAAQRDVALL-QD--HVDIVEAGT--ILCLNEGLGAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGAN 82 (220)
T ss_pred EEECCCCHHHHHHHHHHH-HC--CCCEEEECC--HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHCCCC
T ss_conf 655679999999999983-04--688999087--9999842999999998789987998754526259999999865998
Q ss_pred EEEEECCCCCC-HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEE-EECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 79997066421-589998677649825998523334478998862-014028998-306776533220135778998654
Q gi|254780975|r 88 IITFHPESSPH-IRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMT-VNPGFGGQQLIESTIPKIRQAKAL 164 (224)
Q Consensus 88 ~i~~H~E~~~~-~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~-V~PG~~Gq~f~~~~l~kI~~l~~~ 164 (224)
++|+-.-+... +...++..+++|.+.-+-+-...+++....+.. .+|++.+.. .+--.+|+.+-+..+.+++.+.+
T Consensus 83 ~vTVlg~A~~~TI~~~~~~a~~~g~~v~vDli~~~~~~~ak~~~~lgv~~v~~H~g~D~q~~g~~~~~~~l~~~k~~~~- 161 (220)
T PRK13305 83 WMTIICAAPLATVEKGHAVAQSCGGEIQIELFGNWTLDDARDWHRIGVRQAIYHRGRDAQASGQQWGEADLARMKALSD- 161 (220)
T ss_pred EEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCHHHHHHHHHHHH-
T ss_conf 8999566897999999999998099899984589987899999986998899983336765189863101999998760-
Q ss_pred HHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
Q ss_conf 31386526981589988999999679989997426637899899999999999
Q gi|254780975|r 165 IGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLK 217 (224)
Q Consensus 165 ~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~ 217 (224)
.++.+.|-||||.+|++.+...|+|++|+||+|-+++||.++++.+++--
T Consensus 162 ---~~~~vaVAGGI~~~~i~~~~~~~~~ivIvGraIt~A~dP~~aA~~~~~~I 211 (220)
T PRK13305 162 ---IGLELSITGGITPADLPLFKDIRVKAFIAGRALAGAANPAQVAGDFHAQI 211 (220)
T ss_pred ---CCCEEEEECCCCHHHHHHHHCCCCCEEEECHHHCCCCCHHHHHHHHHHHH
T ss_conf ---69649998887888999997169989998936518999999999999999
No 17
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=99.52 E-value=2.7e-12 Score=98.93 Aligned_cols=197 Identities=21% Similarity=0.357 Sum_probs=151.0
Q ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEEEEC-CEECCC-CCCCHHHHHHHHH-CCCCEEEEEEEEEECCHH-HHHHCCCCCC
Q ss_conf 32588999999999996599899997342-634584-3417899998641-256416856788512033-6764047760
Q gi|254780975|r 12 LAADFSRLGEEISNITKAGAKQIHFDVMD-GCFVPN-ISFGADVIRSLRS-YSDSVFDCHLMISSIDSH-INIIADAGCD 87 (224)
Q Consensus 12 l~~d~~~l~~~i~~l~~~~~d~iHiDImD-g~fvpn-~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~-i~~~~~~g~d 87 (224)
.+.|..+|++.++.+++. .++ +||.- |+ |= ..+|.+-++.||+ +++.++=+.+-+.+--.+ .+...++|+|
T Consensus 8 vALD~~~l~~Ai~~a~~v-~~~--~diiEvGT--pLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd 82 (217)
T COG0269 8 VALDLLDLEEAIEIAEEV-ADY--VDIIEVGT--PLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGAD 82 (217)
T ss_pred EEECCCCHHHHHHHHHHH-HHC--CEEEEECC--HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHCCCC
T ss_conf 666557799999999971-221--32998076--9999851799999998789986886203224048999999973898
Q ss_pred EEEEECCCCC-CHHHHHHHHHHCCCEEEEEE-ECCCCHHHHHHHH-HHCCEEEEEE-EECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 7999706642-15899986776498259985-2333447899886-2014028998-30677653322013577899865
Q gi|254780975|r 88 IITFHPESSP-HIRRSLRTIHAMGKKTGVAI-NPETPVAILEDVI-DEIDMILIMT-VNPGFGGQQLIESTIPKIRQAKA 163 (224)
Q Consensus 88 ~i~~H~E~~~-~~~~~i~~i~~~g~k~Giai-~p~T~~~~i~~~l-~~~D~vliM~-V~PG~~Gq~f~~~~l~kI~~l~~ 163 (224)
++|+-.-+.. -+...++..+++|...-+-+ +-.|+.+....+- --+|++.+.. ++-=-.|+.+-...+.+++++.+
T Consensus 83 ~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~ 162 (217)
T COG0269 83 WVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSD 162 (217)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCHHHHHHHHHHHC
T ss_conf 79998048889999999999983986999851689999999999971897899970434765089941778999998623
Q ss_pred HHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
Q ss_conf 431386526981589988999999679989997426637899899999999999
Q gi|254780975|r 164 LIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLK 217 (224)
Q Consensus 164 ~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~ 217 (224)
+ ++.+.|-|||+.++++.+...|+++||+|++|-+++||.++++++++..
T Consensus 163 ~----g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i 212 (217)
T COG0269 163 L----GAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEI 212 (217)
T ss_pred C----CCEEEEECCCCHHHHHHHHCCCCCEEEECCHHCCCCCHHHHHHHHHHHH
T ss_conf 6----8359986687887889986489979998822148999799999999986
No 18
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=99.48 E-value=1.5e-11 Score=94.13 Aligned_cols=192 Identities=23% Similarity=0.358 Sum_probs=142.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCC-CCCHHHHHHHHH-CCCCEEEEEEEEEECCHH-HHHHCCCCCCEE
Q ss_conf 25889999999999965998999973426345843-417899998641-256416856788512033-676404776079
Q gi|254780975|r 13 AADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNI-SFGADVIRSLRS-YSDSVFDCHLMISSIDSH-INIIADAGCDII 89 (224)
Q Consensus 13 ~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~-~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~-i~~~~~~g~d~i 89 (224)
--|+.++++-++.+-+. | |+=|-=|+ |-+ .+|.+.++.||+ +++..+=..|-+.|--.+ .+...++|+|++
T Consensus 181 ~~~~~~~~~~~~~~p~~--d--~~IIEaGT--PLIK~~G~~aV~~iRe~fPd~~IvADlKTmDaG~lEa~mAa~AGADiv 254 (392)
T PRK13307 181 LPDLEEVERVLSELPQS--D--HIIIEAGT--PLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAV 254 (392)
T ss_pred CCCHHHHHHHHHHCCCC--C--EEEEEECC--HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 88889999999718865--6--28999085--888986789999999878998899854203542688888887599889
Q ss_pred EEECCCCCC-HHHHHHHHHHCCCEEEEE-EECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 997066421-589998677649825998-523334478998862014028998306776533220135778998654313
Q gi|254780975|r 90 TFHPESSPH-IRRSLRTIHAMGKKTGVA-INPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGK 167 (224)
Q Consensus 90 ~~H~E~~~~-~~~~i~~i~~~g~k~Gia-i~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~ 167 (224)
++---+... ++..++..+++|++.-+- ||-.-|.+..+.+--..|+|.+.+ |-.-|.- ...+..+.+.++..
T Consensus 255 tVlG~A~~sTI~~aikeA~k~G~~v~vDlInV~dpv~ra~eLklg~DiI~lH~---giD~Q~~-~~~~~~l~~i~~~~-- 328 (392)
T PRK13307 255 VISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVELHR---GIDEEGT-EHAWGNIPEIKKAA-- 328 (392)
T ss_pred EEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEE---CCCHHHC-CCCHHHHHHHHHHC--
T ss_conf 99567987899999999997097999983478888999998444698899985---4126403-68745699999742--
Q ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf 8652698158998899999967998999742663789989999999999
Q gi|254780975|r 168 RSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 168 ~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l 216 (224)
.+..+.|-||||.+|++.+.++|+|++|+||+|.+++||..+++.+.+-
T Consensus 329 ~~~~VAVAGGI~~et~~~~~~~gadIvIVG~aIT~S~Dp~~AAreil~~ 377 (392)
T PRK13307 329 GKILVAVAGGVRVEKVEEALKAGADILVVGRAITKSKDVRRAAEQFLNK 377 (392)
T ss_pred CCEEEEEECCCCHHHHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHH
T ss_conf 6805999778888889999846998999891213789989999999987
No 19
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=99.38 E-value=2.4e-12 Score=99.20 Aligned_cols=201 Identities=21% Similarity=0.351 Sum_probs=133.6
Q ss_pred CCCCEEECHHHHCCCHHHHHHHHHHHHHCC--CCEEEEEEECCEECCC-CCCCHHHHHHHHHCCCCEEEEEEEEE--ECC
Q ss_conf 979818817063258899999999999659--9899997342634584-34178999986412564168567885--120
Q gi|254780975|r 1 MTPSIQIVPSILAADFSRLGEEISNITKAG--AKQIHFDVMDGCFVPN-ISFGADVIRSLRSYSDSVFDCHLMIS--SID 75 (224)
Q Consensus 1 M~k~~~IspSil~~d~~~l~~~i~~l~~~~--~d~iHiDImDg~fvpn-~~~~~~~i~~i~~~t~~~~dvHLMv~--~P~ 75 (224)
|+++ +| +++.|..++++.++.+++.+ ++.+.+- . |- ..+|++.++.+++...+.+|..+|=- ...
T Consensus 1 mk~~-~l---~vALD~~~~~~a~~l~~~l~~~i~~iKiG-----~-~l~~~~G~~~i~~l~~~~~If~DlK~~DIpnTv~ 70 (215)
T PRK13813 1 MKDS-RI---ILALDVYDREEALKIAEELSDYVDAIKVN-----W-PLILASGLSIIRELKQYTPVIADLKVADIPNTNR 70 (215)
T ss_pred CCCC-CE---EEEECCCCHHHHHHHHHHHCCCCEEEEEC-----H-HHHHHCCHHHHHHHHHHCCEEEEEEECCCHHHHH
T ss_conf 9988-87---99961799999999999847756099989-----7-9987549999999998589079986244637999
Q ss_pred HHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHCCCEEEEEEECCCC--HHHHHHHHHHCCEEEEEEEECCCCCCCCCC
Q ss_conf 33676404776079997066421-589998677649825998523334--478998862014028998306776533220
Q gi|254780975|r 76 SHINIIADAGCDIITFHPESSPH-IRRSLRTIHAMGKKTGVAINPETP--VAILEDVIDEIDMILIMTVNPGFGGQQLIE 152 (224)
Q Consensus 76 ~~i~~~~~~g~d~i~~H~E~~~~-~~~~i~~i~~~g~k~Giai~p~T~--~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~ 152 (224)
.+++.+.++|++++|+|.=+..+ +....+..++.+.++.+......+ .+.++++... +.-++.+.|..|+--..
T Consensus 71 ~~~~~~~~~ga~~vTvh~~~g~~~i~~a~~~~~~~~~~v~~v~~ls~~g~~~~~~~~~~~---~~~~a~~~g~~Gvv~~~ 147 (215)
T PRK13813 71 LICEKVFEAGADGIIVHGFTGRDSLKAVVEAAKRYGKKVFVVVEMSHPGALEFINPVADK---LAKLANEAGAFGVVAPA 147 (215)
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH---HHHHHHHCCCCEEEECC
T ss_conf 999999962999999925688999999999876419845999984687746569999999---99999986999899789
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf 135778998654313865269815899--8899999967998999742663789989999999999
Q gi|254780975|r 153 STIPKIRQAKALIGKRSISLEVDGGVT--SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 153 ~~l~kI~~l~~~~~~~~~~I~vDGGvn--~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l 216 (224)
...+.++.+|+..++ ++.+ +=.||+ ..+.....++|+|.+|+|++|++++||.++++++++-
T Consensus 148 ~~~~~~~~ir~~~~~-~~~i-vtPGI~~~~~~~~~ai~~Gad~iVVGR~It~A~dP~~aa~~i~~~ 211 (215)
T PRK13813 148 TRPERVRAIRRRLGD-DLKI-ISPGIGAQGGKASDAIKAGADYVIVGRSIYNAADPREAAKKIREE 211 (215)
T ss_pred CCHHHHHHHHHHCCC-CCEE-ECCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 887999999986288-7469-857616799998999981899999894335899999999999998
No 20
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.36 E-value=3.5e-11 Score=91.78 Aligned_cols=190 Identities=21% Similarity=0.348 Sum_probs=124.9
Q ss_pred HCCCHHHHHHHHHHHHHCC--CCEEEEEEECCEECCC-CCCCHHHHHHHHH-CCCCEEEEEEEEEE-CCHHHHHHCCCCC
Q ss_conf 3258899999999999659--9899997342634584-3417899998641-25641685678851-2033676404776
Q gi|254780975|r 12 LAADFSRLGEEISNITKAG--AKQIHFDVMDGCFVPN-ISFGADVIRSLRS-YSDSVFDCHLMISS-IDSHINIIADAGC 86 (224)
Q Consensus 12 l~~d~~~l~~~i~~l~~~~--~d~iHiDImDg~fvpn-~~~~~~~i~~i~~-~t~~~~dvHLMv~~-P~~~i~~~~~~g~ 86 (224)
++.|..++++.++.+++.. ++|+-+ |. |- ++.|+..++.||+ ++++++=..|-+-| |....+...++|+
T Consensus 5 vALD~~~~~~A~~l~~~l~~~v~~iKv----G~--~L~~~~G~~~v~~lk~~~p~~~IflDlK~~Di~~tva~~~~~~Ga 78 (202)
T cd04726 5 VALDLLDLEEALELAKKVPDGVDIIEA----GT--PLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGA 78 (202)
T ss_pred EEECCCCHHHHHHHHHHHCCCCCEEEE----CH--HHHHHHCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHCC
T ss_conf 985899999999999970354879998----95--999976899999999878999799986533616799999997079
Q ss_pred CEEEEECCCCCC-HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEE-EEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 079997066421-589998677649825998523334478998862-0140289-9830677653322013577899865
Q gi|254780975|r 87 DIITFHPESSPH-IRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILI-MTVNPGFGGQQLIESTIPKIRQAKA 163 (224)
Q Consensus 87 d~i~~H~E~~~~-~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vli-M~V~PG~~Gq~f~~~~l~kI~~l~~ 163 (224)
|++++|.-+..+ +....+..++.+.+..+.+--....+......+ .++.+.+ .+.+.+..|.... ...++++++
T Consensus 79 d~~tvh~~~g~~~~~~a~~~a~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~~---~~~~~~i~~ 155 (202)
T cd04726 79 DIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAGGWWP---EDDLKKVKK 155 (202)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCH---HHHHHHHHH
T ss_conf 88999666898999999998863696799998368999999988856805889998787775289970---899999986
Q ss_pred HHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf 43138652698158998899999967998999742663789989999999
Q gi|254780975|r 164 LIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL 213 (224)
Q Consensus 164 ~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l 213 (224)
. .+..+.|-|||+.+|.+...++|+|.+|+|++|.+++||.++++.+
T Consensus 156 ~---~~~~i~VtpGIr~~t~~~a~~~gad~iVVGR~It~A~dP~~AA~~f 202 (202)
T cd04726 156 L---LGVKVAVAGGITPDTLPEFKKAGADIVIVGRAITGAADPAEAAREF 202 (202)
T ss_pred H---CCCCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 2---3996788999885409999975999999898345799989999619
No 21
>PRK13127 consensus
Probab=99.04 E-value=1.5e-07 Score=68.50 Aligned_cols=206 Identities=20% Similarity=0.311 Sum_probs=145.3
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf 81706325--889999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC 67 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv 67 (224)
+.|=+.+. |.-...+.+..+.++|+|.+-+.+ .||-.. ..+++ -.+.++++|+.++.|+=+
T Consensus 13 lI~yitaG~P~~e~t~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~pivl 92 (262)
T PRK13127 13 LVPYLVAGDPDPEATLEFVKALVKGGADVIELGIPFSDPVADGPTIQAADVRALSAGMKIDKYFELVKELRVDSSVPLVL 92 (262)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 89886270899899999999999769999997898888776579999999999976997999999999974569988799
Q ss_pred EEEEE-------ECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC-CEEEEE
Q ss_conf 67885-------1203367640477607999706642158999867764982599852333447899886201-402899
Q gi|254780975|r 68 HLMIS-------SIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEI-DMILIM 139 (224)
Q Consensus 68 HLMv~-------~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~-D~vliM 139 (224)
|.= -.++|++.+.++|+|-+.+.==-.+.-.+..+.++++|...-.-+.|.|+-+.+..+.... .+|-++
T Consensus 93 --M~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~a~gFiY~v 170 (262)
T PRK13127 93 --MTYYNPVYRYGVEKFVKKAAEAGVSGLIIPDLPVEEATDLREACKKHGLDLVFLVAPTTPEERLKRIDEASSGFVYLV 170 (262)
T ss_pred --EECCHHHHHCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEE
T ss_conf --966138876089999999987599769966999789999999998558327998589998999999984389818998
Q ss_pred EEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHH----CCCCHHHHHHH
Q ss_conf 830677653--322013577899865431386526981589-98899999967998999742663----78998999999
Q gi|254780975|r 140 TVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFF----NQKGEISYAKR 212 (224)
Q Consensus 140 ~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif----~~~d~~~~~~~ 212 (224)
++ .|-.|. .+.+...+.++++|+. .+.++.|-=|| +.+.++.+.+.|||-+|+||++. ++.++.+..+.
T Consensus 171 s~-~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~v~~~~~~~aDGvIVGSaiv~~i~~~~~~~~~~~~ 246 (262)
T PRK13127 171 SR-LGVTGAREDVEEATFDLLKRARTT---CKNKIAVGFGISKGEHAEELLDAGADGVIVGSALVDIIAEGGDNEEVADR 246 (262)
T ss_pred EC-CCCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEEEECCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCHHHHHHH
T ss_conf 43-555687655528899999999961---79984899334889999999864999999878999999966997899999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780975|r 213 LNDLKK 218 (224)
Q Consensus 213 l~~l~~ 218 (224)
+.++.+
T Consensus 247 v~~~~~ 252 (262)
T PRK13127 247 LEELAR 252 (262)
T ss_pred HHHHHH
T ss_conf 999999
No 22
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=99.02 E-value=1.8e-07 Score=68.04 Aligned_cols=190 Identities=16% Similarity=0.227 Sum_probs=136.1
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf 81706325--889999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC 67 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv 67 (224)
+.|=+.+. |.....+.++.+.++|+|.+-+.+ .||--. .++++ -++.++.+|+.++.|+=+
T Consensus 17 li~y~taG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~v~~~r~~~~~Pivl 96 (263)
T CHL00200 17 LIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVI 96 (263)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 68887073898789999999999769999997898888666589999999999977987778999999986067998899
Q ss_pred EEEE-EEC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEE
Q ss_conf 6788-512------033676404776079997066421589998677649825998523334478998862014-02899
Q gi|254780975|r 68 HLMI-SSI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIM 139 (224)
Q Consensus 68 HLMv-~~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM 139 (224)
|. -|| ++|+..+.++|+|=+.+.=---+...+..+.++++|..+-.-+.|.|+-+.++.+....+ +|-++
T Consensus 97 --MtY~N~i~~yG~e~F~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~GFiY~v 174 (263)
T CHL00200 97 --FTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLV 174 (263)
T ss_pred --EEEHHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf --862068887388999999998499868747999788899999998558621666478996999999997289808985
Q ss_pred EEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 830677653--322013577899865431386526981589-988999999679989997426637
Q gi|254780975|r 140 TVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 140 ~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
+ ..|-.|. .+.+..-+.++.+|++ .+.++.|-=|| +.+.++.+.+.|||-+|+||++.+
T Consensus 175 s-~~GvTG~~~~~~~~l~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~~~~~aDGvIVGSaiV~ 236 (263)
T CHL00200 175 S-TTGVTGLKTELDKKLKKLIETIKKM---TNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQ 236 (263)
T ss_pred E-CCCCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 3-3655687544518799999999973---699848735879999999997459999998789999
No 23
>PRK13122 consensus
Probab=99.01 E-value=1.6e-07 Score=68.36 Aligned_cols=208 Identities=19% Similarity=0.236 Sum_probs=144.5
Q ss_pred CCCCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCC
Q ss_conf 97981881706325889999999999965998999973------426345---------84341--78999986412564
Q gi|254780975|r 1 MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDS 63 (224)
Q Consensus 1 M~k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~ 63 (224)
|+| -+.|=++ +|. ++.+.++.+.++|+|.+-+-+ .||--. .++++ -++.++++|+..+.
T Consensus 1 ~~K--~fipyi~-g~p-d~~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIQ~A~~rAL~~G~~~~~~~~~l~~~r~~~~~ 76 (242)
T PRK13122 1 MTK--LFIPYIM-GNK-DLIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITIDYIFNQLEKHGDQIKC 76 (242)
T ss_pred CCE--EEEEEEC-CCC-CHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
T ss_conf 972--3777626-899-999999999975999999789888866658999999999997699899999999973136798
Q ss_pred EEEEEEEEE-E------CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-E
Q ss_conf 168567885-1------2033676404776079997066421589998677649825998523334478998862014-0
Q gi|254780975|r 64 VFDCHLMIS-S------IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-M 135 (224)
Q Consensus 64 ~~dvHLMv~-~------P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~ 135 (224)
|+ =||.= | .++|++.+.++|+|-+.+.==-.+.-.+..+.++++|...-.-+.|.|+-+.++.+..... +
T Consensus 77 pi--vlM~Y~N~i~~~G~~~F~~~~~~~GvdGvIipDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~s~GF 154 (242)
T PRK13122 77 NY--VLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRLKQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGF 154 (242)
T ss_pred CE--EEEEECHHHHHHCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 77--9998516988727999999998769986777899878899999999867986898718999899999999829996
Q ss_pred EEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHC---CCCHHHH
Q ss_conf 2899830677653--322013577899865431386526981589-988999999679989997426637---8998999
Q gi|254780975|r 136 ILIMTVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFN---QKGEISY 209 (224)
Q Consensus 136 vliM~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~---~~d~~~~ 209 (224)
|-+.+ ..|-.|. .+.+..-+.++.+|++ .+.++.|-=|| +.+.++.+.+ +||-+|+||++.+ +....+.
T Consensus 155 iY~vs-~~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~v~~i~~-~ADGvIVGSaivk~i~~~~~e~~ 229 (242)
T PRK13122 155 IYTVT-MNATTGQNGAFHPELKRKIESIKAI---ANVPVVAGFGIRTPQHVADIKE-VADGIVIGSEIVKRFKSNTREEI 229 (242)
T ss_pred EEEEE-CCCCCCCCCCCCHHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHH-HCCEEEECHHHHHHHHHCCHHHH
T ss_conf 69873-3543576555658899999999972---5998587158799999999981-19999984899999996798999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999997
Q gi|254780975|r 210 AKRLNDLKKS 219 (224)
Q Consensus 210 ~~~l~~l~~~ 219 (224)
.+.+++++++
T Consensus 230 ~~~i~~l~~a 239 (242)
T PRK13122 230 IKYLQSIQQT 239 (242)
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
No 24
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.00 E-value=7.1e-07 Score=64.25 Aligned_cols=203 Identities=18% Similarity=0.273 Sum_probs=142.8
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf 81706325--889999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC 67 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv 67 (224)
+.|=+.+. |.....+.++.+.++|+|.+-+-+ .||-.. .++++ .++.++.+|+.++.|+=+
T Consensus 11 li~y~taG~P~~e~~~~~~~~l~~~Gad~iEiGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~f~~~~~~r~~~~~pivl 90 (256)
T PRK13111 11 LIPYITAGDPDLETSLEILKALVEAGADIIELGIPFSDPVADGPVIQRASLRALAAGVTLADVLELLREIRAKPTIPIVL 90 (256)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 89887070899899999999999659999997888788766579999999999977996999999999986068998899
Q ss_pred EEEEE-E------CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEE
Q ss_conf 67885-1------2033676404776079997066421589998677649825998523334478998862014-02899
Q gi|254780975|r 68 HLMIS-S------IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIM 139 (224)
Q Consensus 68 HLMv~-~------P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM 139 (224)
|.= | .++|++.+.++|+|-+.+.==-.+.-.+..+.++++|...-.-+.|.|+-+.++.+....+ +|-+.
T Consensus 91 --M~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~s~gfiY~v 168 (256)
T PRK13111 91 --MTYYNPIFQYGVEAFAADAAEAGVDGLIIPDLPPEEAEEFRAAAKKHGIDLIFLVAPTTTDERLKKIASHASGFVYYV 168 (256)
T ss_pred --EEECCHHHHHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEE
T ss_conf --850308987099999999997599779816999788899999999759808999699998899999996269859998
Q ss_pred EEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHC---CCCHHHHHHHH
Q ss_conf 830677653--322013577899865431386526981589-988999999679989997426637---89989999999
Q gi|254780975|r 140 TVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFN---QKGEISYAKRL 213 (224)
Q Consensus 140 ~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~---~~d~~~~~~~l 213 (224)
+ ..|-.|. .+.....+.++++|+. .+.++.|-=|| +.+.++.+.+ +||.+|+||++.+ ..++.+..+.+
T Consensus 169 s-~~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pi~vGFGIs~~e~v~~~~~-~aDGvIVGSaiv~~i~~~~~~~~~~~v 243 (256)
T PRK13111 169 S-RAGVTGARSADAADVADLLARLKAH---TDLPVAVGFGISTPEQAAAIAE-GADGVIVGSALVKIIEAADPEEALAAL 243 (256)
T ss_pred E-CCCCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHHHC-CCCEEEECHHHHHHHHHCCHHHHHHHH
T ss_conf 5-6776788766628899999999870---6897588528899999999974-599999868999999843977789999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780975|r 214 NDL 216 (224)
Q Consensus 214 ~~l 216 (224)
.+.
T Consensus 244 ~~f 246 (256)
T PRK13111 244 AEF 246 (256)
T ss_pred HHH
T ss_conf 999
No 25
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=98.99 E-value=4.1e-08 Score=72.19 Aligned_cols=176 Identities=18% Similarity=0.192 Sum_probs=121.5
Q ss_pred HHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHH----HHHCCCCCCEEEEECCC
Q ss_conf 99999999659989999734263458434178999986412564168567885120336----76404776079997066
Q gi|254780975|r 20 GEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHI----NIIADAGCDIITFHPES 95 (224)
Q Consensus 20 ~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i----~~~~~~g~d~i~~H~E~ 95 (224)
.+..+.+.++|.+.+++-................++..|+.|+.|+-+.++...+..+. ......|+|.+.+|...
T Consensus 15 ~E~a~~~~~aGa~~i~~~~~~~~~~~~~~~~~~~i~~~~~~t~~P~~v~~~~~~~~~~~~~~~~~~~~~g~d~v~i~~~~ 94 (200)
T cd04722 15 VELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAV 94 (200)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 99999998688736886488798246169999999999970799879984205666677599999998399989978999
Q ss_pred CCC---HHHHHHHHHHC--CCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 421---58999867764--9825998523334478998862014028998306776533220135778998654313865
Q gi|254780975|r 96 SPH---IRRSLRTIHAM--GKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSI 170 (224)
Q Consensus 96 ~~~---~~~~i~~i~~~--g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~ 170 (224)
... ..+.++.+++. +.++.....+.+......-.-.-+|.|.+-+...+.+++...+.....+.+.+. ..++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i 171 (200)
T cd04722 95 GYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR---GSKV 171 (200)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH---HCCC
T ss_conf 6543006899999998448964999689999999999998099799970874678887666116899999998---5799
Q ss_pred EEEEECCCCH-HHHHHHHHCCCCEEEECH
Q ss_conf 2698158998-899999967998999742
Q gi|254780975|r 171 SLEVDGGVTS-RNIKSLVQAGADLLVVGS 198 (224)
Q Consensus 171 ~I~vDGGvn~-~~i~~l~~~Gad~~V~Gs 198 (224)
.+.++|||+. +++..+...|||.+++||
T Consensus 172 pvi~~gGi~~~~~~~~~~~~gAdgv~vGs 200 (200)
T cd04722 172 PVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 98997587999999999985998898188
No 26
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.96 E-value=2e-07 Score=67.80 Aligned_cols=196 Identities=17% Similarity=0.162 Sum_probs=125.2
Q ss_pred ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf 81706325889999999999965998999973426345843417899998641256416856788512033676404776
Q gi|254780975|r 7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC 86 (224)
Q Consensus 7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~ 86 (224)
|+|.-.+.+ ++.+.++.+.++|++.+|+=.-+..-- . -.+..+++++.+ ...++-|.+++...... ..++
T Consensus 12 IT~~~~~~~--~~~~~~~~~l~~Gv~~vQlR~K~~~~~---~-~~~~a~~l~~i~-~~~~~~liINd~~~lA~---~~~a 81 (210)
T PRK00043 12 ITDSRDSTG--DLLEVVEAALAGGVTLVQLREKGADAR---E-RLELARALKALC-RRYGVPLIVNDRVDLAL---AVGA 81 (210)
T ss_pred EECCCCCCC--CHHHHHHHHHHCCCCEEEECCCCCCHH---H-HHHHHHHHHHHH-HHHCCEEEECCHHHHHH---HHCC
T ss_conf 919853455--499999999986999999926998999---9-999999999999-98099599768899998---7199
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCC-HHHHHHHHHHHHH
Q ss_conf 079997066421589998677649825998523334478998862014028998306776533220-1357789986543
Q gi|254780975|r 87 DIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIE-STIPKIRQAKALI 165 (224)
Q Consensus 87 d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~-~~l~kI~~l~~~~ 165 (224)
| -+|....+-+......+...+..+|++.+ +.-+...-.-..+||+.+=.+-|--+.....+ .-++.++++++.
T Consensus 82 d--GvHLgq~d~~~~~~r~~l~~~~iiG~S~h--~~~e~~~A~~~gaDYi~~Gpvf~T~tK~~~~~~~g~~~l~~~~~~- 156 (210)
T PRK00043 82 D--GVHLGQDDLPVADARAILGPDAIIGVSTH--TLEEAAAAAAAGADYVGVGPIFPTPTKKDAKPAVGLELLREAREA- 156 (210)
T ss_pred C--EEECCCCCCCHHHHHHHCCCCCEEEEECC--CHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH-
T ss_conf 9--89769887689999975198878998479--999999998828983887452147988888777899999999984-
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 138652698158998899999967998999742663789989999999999997
Q gi|254780975|r 166 GKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKS 219 (224)
Q Consensus 166 ~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~~ 219 (224)
.++++..=||||.+|+.++.++|++.+.+-|+||+++||.++.+++.+.-+.
T Consensus 157 --~~iPvvAIGGI~~~ni~~~~~~Ga~giAvis~I~~a~dp~~a~~~l~~~~~~ 208 (210)
T PRK00043 157 --IDIPIVAIGGITPENAAEVLEAGADGVAVVSAITAAEDPAAAARALLAAFRA 208 (210)
T ss_pred --CCCCEEEECCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHH
T ss_conf --7999899808899999999980999999708977699999999999999997
No 27
>PRK03220 consensus
Probab=98.96 E-value=3e-07 Score=66.63 Aligned_cols=199 Identities=14% Similarity=0.150 Sum_probs=138.3
Q ss_pred CCCCEEECHHHHCCC--------------HHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 979818817063258--------------899999999999659989999734263458434178999986412564168
Q gi|254780975|r 1 MTPSIQIVPSILAAD--------------FSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD 66 (224)
Q Consensus 1 M~k~~~IspSil~~d--------------~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~d 66 (224)
|..+|+|.|+|.=.| ..+-.+..+...+.|+|++|+==.||.+..+ .-..+.++.+.+.+..|+.
T Consensus 1 m~~~mrIIPaIDi~~g~~Vkg~~~~~~~~~gdP~~~a~~~~~~G~d~lhivDld~a~~g~-~~n~~~I~~i~~~~~~pi~ 79 (257)
T PRK03220 1 MGLAVRVIPCLDVDAGRVVKGVNFENLRDAGDPVELAAVYDAEGADELTFLDVTASSSGR-ATMLDVVRRTAEQVFIPLT 79 (257)
T ss_pred CCCCEEEEEEEEEECCEEEECCCCCCCEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCC-HHHHHHHHHHHHCCCCCEE
T ss_conf 997648999999999988857777786788899999999998699989999088875676-3079999999850696489
Q ss_pred EEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEE-EEEEEC-----------------------C--
Q ss_conf 56788512033676404776079997066421589998677649825-998523-----------------------3--
Q gi|254780975|r 67 CHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKT-GVAINP-----------------------E-- 120 (224)
Q Consensus 67 vHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~-Giai~p-----------------------~-- 120 (224)
+===+.+ ...++.+.++|+|.|++-..+.++++-+-+.++..|.+. -+++.. .
T Consensus 80 vGGGIrs-~e~~~~ll~~GadkVvigs~a~~~p~~~~~~~~~fG~q~Iv~siD~k~~~~~~~~~~~g~~v~~~g~~~~t~ 158 (257)
T PRK03220 80 VGGGVRT-VEDVDSLLRAGADKVSVNTAAIARPELLAELARRFGSQCIVLSVDARRVPVGSAPTPSGFEVTTHGGRRGTG 158 (257)
T ss_pred EECCCCC-HHHHHHHHHCCCCEEECHHHHHHCCHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEECC
T ss_conf 8478587-999999998197508720667759477789998709866999999886256774346874999728826028
Q ss_pred -CCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEEC
Q ss_conf -344789988620-14028998306776533220135778998654313865269815899-889999996799899974
Q gi|254780975|r 121 -TPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVG 197 (224)
Q Consensus 121 -T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~G 197 (224)
++.+.++.+.+. +..+++-.|+---.++.++-+.++++++ ..++++.+-||++ .+.+..+.+.|++-+++|
T Consensus 159 ~~~~~~i~~~~~~g~geil~tdI~rDGt~~G~d~~l~~~i~~------~~~~piIasGGv~s~~di~~l~~~g~~gv~~g 232 (257)
T PRK03220 159 IDAVEWAARGAELGVGEILLNSMDADGTKAGFDLEMLRAVRA------AVTVPVIASGGAGAVEHFAPAVAAGADAVLAA 232 (257)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH------HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEH
T ss_conf 759999999862698889999886866023789699999997------48999899878999999999997899799874
Q ss_pred HHHHCCCCHH
Q ss_conf 2663789989
Q gi|254780975|r 198 SSFFNQKGEI 207 (224)
Q Consensus 198 saif~~~d~~ 207 (224)
++++..+-..
T Consensus 233 ~a~~~~~~s~ 242 (257)
T PRK03220 233 SVFHFGELTI 242 (257)
T ss_pred HHHHCCCCCH
T ss_conf 6878899889
No 28
>PRK13129 consensus
Probab=98.95 E-value=3.3e-07 Score=66.38 Aligned_cols=190 Identities=17% Similarity=0.286 Sum_probs=136.9
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf 81706325--889999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC 67 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv 67 (224)
+.|=+.+. |.-...+.++.+.++|+|.+-+-| .||--. .++++ -++.++++|+.++.|+=+
T Consensus 21 li~yitaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~Pivl 100 (267)
T PRK13129 21 LMPFLMAGDPDLETTAEALLILQENGADLIELGIPYSDPLADGPVIQAAATRALQSGTTLEKVLEMLESLKGKLTIPIIL 100 (267)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 89887071899899999999999779999997998888776589999999999976987899999999854347888899
Q ss_pred EEEEE-E------CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEE
Q ss_conf 67885-1------2033676404776079997066421589998677649825998523334478998862014-02899
Q gi|254780975|r 68 HLMIS-S------IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIM 139 (224)
Q Consensus 68 HLMv~-~------P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM 139 (224)
|.= | .++|+..+.++|+|=+.+.==-.+.-.+..+.++++|..+-.-+.|.|+-+.+..+..... +|-+.
T Consensus 101 --M~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~~~gFiY~v 178 (267)
T PRK13129 101 --FTYYNPLLNRGMERFCEQAAAAGVAGLVVPDLPLEEAEKLSPIAAERGIDLILLVAPTTPAERMKRIAQQSRGFTYLV 178 (267)
T ss_pred --EEEHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEE
T ss_conf --861078988559999999986698757678999899999999998539816899489996899999981689808987
Q ss_pred EEECCCCC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 83067765--33220135778998654313865269815899-88999999679989997426637
Q gi|254780975|r 140 TVNPGFGG--QQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 140 ~V~PG~~G--q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
++ .|-.| +.+.+...+.++.+|+. .+..+.|-=||+ .+.+..+.+.|||-+|+||++.+
T Consensus 179 s~-~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~~~~~ADGvIVGSaiV~ 240 (267)
T PRK13129 179 SV-TGVTGERSQMENRVESLLQQLRQV---TSKPIAVGFGISGPEQARQVREWGADGAIVGSAFVK 240 (267)
T ss_pred EC-CCCCCCCCCCCHHHHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 34-665676544508899999999983---489817884479999999998549999998789999
No 29
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.92 E-value=9.8e-07 Score=63.36 Aligned_cols=198 Identities=18% Similarity=0.290 Sum_probs=139.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEE------ECCEECCC---------CCC--CHHHHHHHHHCCCCEEEEEEEEE-E---
Q ss_conf 889999999999965998999973------42634584---------341--78999986412564168567885-1---
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDV------MDGCFVPN---------ISF--GADVIRSLRSYSDSVFDCHLMIS-S--- 73 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fvpn---------~~~--~~~~i~~i~~~t~~~~dvHLMv~-~--- 73 (224)
|.....+.++.+.++|+|.+-+-+ .||--... +++ ..+.++.+|+..+.|+= ||.= |
T Consensus 12 ~~~~~~~~~~~l~~~G~d~iEiGiPfsDP~aDGpvIq~A~~~aL~~g~~~~~~~~~~~~~r~~~~~piv--lM~Y~N~i~ 89 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIV--LMGYYNPIL 89 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEE--EEEECHHHH
T ss_conf 979999999999976999999789988877658999999999997699499999999998734798889--998445766
Q ss_pred ---CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEEEECCCCCC-
Q ss_conf ---2033676404776079997066421589998677649825998523334478998862014-02899830677653-
Q gi|254780975|r 74 ---IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMTVNPGFGGQ- 148 (224)
Q Consensus 74 ---P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~V~PG~~Gq- 148 (224)
.++|++++.++|+|-+.+.==-.+.-....+.++++|..+-.-+.|.|+.+.++.+....+ +|-+++.. |-.|.
T Consensus 90 ~~G~e~F~~~~~~~Gv~GviipDLP~ee~~~~~~~~~~~~i~~I~lvsPtt~~~ri~~i~~~s~gfiY~vs~~-GvTG~~ 168 (242)
T cd04724 90 QYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRT-GVTGAR 168 (242)
T ss_pred HHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECC-CCCCCC
T ss_conf 5289999999997599758706999578468999998659838899689887899999997479849998577-777877
Q ss_pred -CCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCC---CCHHHHHHHHHHHHHH
Q ss_conf -322013577899865431386526981589-9889999996799899974266378---9989999999999997
Q gi|254780975|r 149 -QLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQ---KGEISYAKRLNDLKKS 219 (224)
Q Consensus 149 -~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~---~d~~~~~~~l~~l~~~ 219 (224)
.+.....+.++++|+. .+..+.|==|| +.++++.+.+. ||.+|+||++.+. ....+....++++++.
T Consensus 169 ~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~v~~~~~~-aDGvIVGSa~V~~i~~~~~~~~~~~~~~~~~~ 240 (242)
T cd04724 169 TELPDDLKELIKRIRKY---TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKIIEEGGEEEALEALKELAES 240 (242)
T ss_pred CCCHHHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHH-CCEEEECHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 55649999999999871---68974874387999999999965-99999878999999963968899999999997
No 30
>PRK13117 consensus
Probab=98.90 E-value=1.7e-06 Score=61.83 Aligned_cols=191 Identities=15% Similarity=0.193 Sum_probs=137.5
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHH-CCCCEEE
Q ss_conf 81706325--889999999999965998999973------426345---------84341--7899998641-2564168
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRS-YSDSVFD 66 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~-~t~~~~d 66 (224)
+.|=+.+. |+....+.+..+.++|+|.+-+-| .||--. .++++ -+++++.+|+ .++.|+=
T Consensus 19 li~yitaG~P~~~~t~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~piv 98 (268)
T PRK13117 19 FVPFVTLGDPSPELSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNANLRALAAGVTPAQCFELLAKIRAKYPTIPIG 98 (268)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf 89887270899799999999999669998997899888565579999999999845996999999998850047898779
Q ss_pred EEEEE-EE------CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEE
Q ss_conf 56788-51------203367640477607999706642158999867764982599852333447899886201402899
Q gi|254780975|r 67 CHLMI-SS------IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIM 139 (224)
Q Consensus 67 vHLMv-~~------P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM 139 (224)
+ |. -| .++|++.+.++|+|=+.+.==-.+.-.+..+.++++|..+-.-+.|.|+-+.+..+....+-.+-.
T Consensus 99 l--M~Y~N~i~~~G~e~F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~gl~~I~lv~Ptt~~~Ri~~i~~~a~GFiY~ 176 (268)
T PRK13117 99 L--LLYANLVFANGIDNFYARCAEAGVDSVLIADVPVEESAPFRQAAKKHGIAPIFICPPNADDDTLRQIASLGRGYTYL 176 (268)
T ss_pred E--EECCCHHHHCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEE
T ss_conf 9--73262898717999999999769877985799978858999999867983799847999999999999747985999
Q ss_pred EEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHC
Q ss_conf 830677653--32201357789986543138652698158998-8999999679989997426637
Q gi|254780975|r 140 TVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 140 ~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
-..+|-.|. .+.+..-+.++++|+. .+.++.|-=||+. +.++...+.++|-+|+||++.+
T Consensus 177 vs~~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~~~~~aDGvIVGSaiV~ 239 (268)
T PRK13117 177 LSRAGVTGAENKAAAPLNHLVEKLKEY---NAPPPLQGFGISEPEQVKAAIKAGAAGAISGSAIVK 239 (268)
T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHC---CCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 836777889866627799999999964---799869983789999999998638998998789999
No 31
>PRK02621 consensus
Probab=98.89 E-value=5.6e-07 Score=64.91 Aligned_cols=202 Identities=19% Similarity=0.148 Sum_probs=136.7
Q ss_pred CCCCEEECHHHHCCCH--------------HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 9798188170632588--------------99999999999659989999734263458434178999986412564168
Q gi|254780975|r 1 MTPSIQIVPSILAADF--------------SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD 66 (224)
Q Consensus 1 M~k~~~IspSil~~d~--------------~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~d 66 (224)
|.| |+|.|+|.=.|- .+..+..+...+.|+|++|+==.|+.+-.+ ....+.++++++.+..|+.
T Consensus 1 Mlk-~RIiPaidi~~g~~Vk~~~~~~~~~~gdP~~~ak~~~~~gad~lhivDld~a~~~~-~~~~~~I~~i~~~~~ipi~ 78 (254)
T PRK02621 1 MLA-KRIIPCLDVAAGRVVKGVNFVGLRDAGDPVELACRYSQAGADELVFLDITATHEGR-ATLIDVVYRTAEQVFIPLT 78 (254)
T ss_pred CCC-CCEEEEEEEECCEEEECCCCCCCEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHCCCCEE
T ss_conf 986-61599999999999978577784788899999999998599999998266765675-4289999999986798589
Q ss_pred EEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCE-EEEEEEC-------------------CCC---H
Q ss_conf 5678851203367640477607999706642158999867764982-5998523-------------------334---4
Q gi|254780975|r 67 CHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKK-TGVAINP-------------------ETP---V 123 (224)
Q Consensus 67 vHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k-~Giai~p-------------------~T~---~ 123 (224)
+===+.+ ...++++.++|+|.|++-..+..+++-+-+..+..|.+ +-+++.. .|. .
T Consensus 79 vGGGIrs-~e~~~~ll~~GadkVii~s~a~~np~~~~~~~~~fG~q~Iv~siD~k~~~~~~~gw~~~~~~~~~~~~~~~~ 157 (254)
T PRK02621 79 VGGGISS-LEGIKELLRAGADKVSLNSAAVRDPDLVRQASDRFGSQCIVVAIDARRRKPDNPGWDVYVRGGRENTGLDAV 157 (254)
T ss_pred EECCEEE-HHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCCCCCHH
T ss_conf 9633535-799999997499989998867647354455687569843399999553534788628996688455776799
Q ss_pred HHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHH-HHHCCCCEEEECHHH
Q ss_conf 789988620-140289983067765332201357789986543138652698158998-89999-996799899974266
Q gi|254780975|r 124 AILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKS-LVQAGADLLVVGSSF 200 (224)
Q Consensus 124 ~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~-l~~~Gad~~V~Gsai 200 (224)
+.++.+.+. +..+++-.|+---.++.++-+.++++.+ ..++++.+-||++. +.+.+ +...|++-+++|+++
T Consensus 158 ~~~~~~~~~g~geil~tdI~~DGt~~G~d~~l~~~i~~------~~~iPvi~sGGi~s~edi~~~l~~~~v~gvivG~al 231 (254)
T PRK02621 158 EWAEEVAERGAGEILLTSMDGDGTQAGYDLELTRAIAE------AVEIPVIASGGAGCCDHIAEALTEGKAEAALLASLL 231 (254)
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHH------HCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHH
T ss_conf 99988776288969998880479757688699999997------179979997799999999999985898198775787
Q ss_pred HCCCCHHHHHH
Q ss_conf 37899899999
Q gi|254780975|r 201 FNQKGEISYAK 211 (224)
Q Consensus 201 f~~~d~~~~~~ 211 (224)
+..+-....++
T Consensus 232 ~~~~~~l~e~K 242 (254)
T PRK02621 232 HYGQLTIAEIK 242 (254)
T ss_pred HCCCCCHHHHH
T ss_conf 88999999999
No 32
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.86 E-value=1.7e-06 Score=61.91 Aligned_cols=186 Identities=15% Similarity=0.188 Sum_probs=128.9
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEE
Q ss_conf 63258899999999999659989999734263458434178999986412564168567885120336764047760799
Q gi|254780975|r 11 ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIIT 90 (224)
Q Consensus 11 il~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~ 90 (224)
.+..|+.++.+ ...+.|++++|+==.||.+-. -.-..+.++.+++.+..|+.+-==+.+ ..-++.+.++|++.|+
T Consensus 26 ~y~~dP~~~A~---~~~~~Ga~~lhvvDLd~A~~g-~~~n~~~I~~i~~~~~~pi~vGGGIrs-~e~~~~~l~~GadkVv 100 (241)
T PRK00748 26 VYGDDPLAQAQ---AWQDQGAEWLHLVDLDGAFAG-RPVNLELIEAIVAAVDIPVQLGGGIRD-LETVEAYLDAGVARVI 100 (241)
T ss_pred EECCCHHHHHH---HHHHCCCCEEEEEECCCCCCC-CCCHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHCCCCEEE
T ss_conf 60789999999---999879998999978542028-820799999999867999998277074-9999999976977588
Q ss_pred EECCCCCCHHHHHHHHHHCCCEEEEEEEC------------CC---CHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHH
Q ss_conf 97066421589998677649825998523------------33---44789988620-1402899830677653322013
Q gi|254780975|r 91 FHPESSPHIRRSLRTIHAMGKKTGVAINP------------ET---PVAILEDVIDE-IDMILIMTVNPGFGGQQLIEST 154 (224)
Q Consensus 91 ~H~E~~~~~~~~i~~i~~~g~k~Giai~p------------~T---~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~ 154 (224)
+-.++..+++-+-+.+++.|-++-+++.. .| +.+.++.+.+. +..+++..|+---..+.+.-+.
T Consensus 101 igS~a~~n~~~i~~~~~~~g~~ivvsiD~k~~~v~~~gw~~~t~~~~~~~i~~~~~~G~~eii~tdI~~DGt~~G~d~~l 180 (241)
T PRK00748 101 IGTAAVKNPELVKEACKKFPGRIVVGLDARDGKVATRGWQEVSGVDLEDLAKRFEDAGVAAIIYTDISRDGTLSGPNVEL 180 (241)
T ss_pred ECCHHHHCHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHH
T ss_conf 64710339689999986235557999982166540157554679748999999985587569998870568547689999
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHC---CCCEEEECHHHHCCCCHH
Q ss_conf 57789986543138652698158998-899999967---998999742663789989
Q gi|254780975|r 155 IPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQA---GADLLVVGSSFFNQKGEI 207 (224)
Q Consensus 155 l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~---Gad~~V~Gsaif~~~d~~ 207 (224)
++++.+ ..++++.+-|||+. +.+..|.+. |++-+++|+|++..+=..
T Consensus 181 ~~~i~~------~~~ipviasGGv~s~~Di~~L~~~~~~gv~gviiG~Aly~g~i~l 231 (241)
T PRK00748 181 TRELAA------ATPIPVIASGGVSSLDDIRALKALGPEGVEGVIVGKALYEGKFDL 231 (241)
T ss_pred HHHHHH------HCCCCEEEECCCCCHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCH
T ss_conf 999998------689989998899999999999860317924899878987799899
No 33
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=98.86 E-value=1.3e-06 Score=62.51 Aligned_cols=184 Identities=17% Similarity=0.203 Sum_probs=128.3
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEE
Q ss_conf 06325889999999999965998999973426345843417899998641256416856788512033676404776079
Q gi|254780975|r 10 SILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDII 89 (224)
Q Consensus 10 Sil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i 89 (224)
.....|+.++.+ .+.+.|+|++|+==.|+.+- +-.-..+.++.+.+.+..|+.+-==+.+. ..++.+.+.|++.|
T Consensus 25 ~~~~gdP~~~a~---~~~~~g~d~i~ivDLda~~~-~~~~n~~~i~~i~~~~~~pi~vgGGIrs~-e~~~~~l~~Ga~kv 99 (229)
T pfam00977 25 LVYAGDPVELAK---RYEEEGADELHFVDLDAAKE-GRPVNLDLIEEIAEEVFIPVQVGGGIRSL-EDAERLLSAGADKV 99 (229)
T ss_pred CEECCCHHHHHH---HHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHHHHCCCCEEEECCEEEH-HHHHHHHHCCCCEE
T ss_conf 367799999999---99987999899996866302-68106999999998669878996456118-99999997699899
Q ss_pred EEECCCCCCHHHHHHHHHHCCC-EEEEEEEC--C--------------CCHHHHHHHHHH-CCEEEEEEEECCCCCCCCC
Q ss_conf 9970664215899986776498-25998523--3--------------344789988620-1402899830677653322
Q gi|254780975|r 90 TFHPESSPHIRRSLRTIHAMGK-KTGVAINP--E--------------TPVAILEDVIDE-IDMILIMTVNPGFGGQQLI 151 (224)
Q Consensus 90 ~~H~E~~~~~~~~i~~i~~~g~-k~Giai~p--~--------------T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~ 151 (224)
++-.++.++++-+-+.++..|. ++-+++.. . ++.+.++.+.+. +-.++++.|+---.++.+.
T Consensus 100 vigs~~~~~~~~~~~~~~~~g~q~iv~siD~k~~~~v~~~~~~~~~~~~~~~~i~~~~~~g~~eii~tdi~~dGt~~G~d 179 (229)
T pfam00977 100 IIGTAAVKNPELIKEAAEKFGSQCIVVAIDAKRDGKVAINGWREETGIDAVEWAKKLEELGAGEILLTDIDRDGTLSGPD 179 (229)
T ss_pred EECCCHHHCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
T ss_conf 95860430937899999980986479999871451799806433567443344567765167506887750427566689
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 013577899865431386526981589-98899999967998999742663789
Q gi|254780975|r 152 ESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 152 ~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
-+.++++++ ..+.++.+-||| +.+.+..+.+.|++-+++||+++...
T Consensus 180 ~~l~~~i~~------~~~~pii~~GGv~~~~di~~l~~~g~~gvivg~al~~g~ 227 (229)
T pfam00977 180 LELTRELAE------AVNIPVIASGGVGSLEDLKELFSEGVDGVIAGSALHEGE 227 (229)
T ss_pred HHHHHHHHH------HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCCC
T ss_conf 999999997------689989998589999999999987998999857866878
No 34
>PRK13131 consensus
Probab=98.85 E-value=1.9e-06 Score=61.49 Aligned_cols=208 Identities=16% Similarity=0.242 Sum_probs=143.5
Q ss_pred EEECHHHHCCC--HHHHHHHHHHHHHCCCCEEEEEE------ECCEEC--------CCCC--CCHHHHHHHHH-CCCCEE
Q ss_conf 18817063258--89999999999965998999973------426345--------8434--17899998641-256416
Q gi|254780975|r 5 IQIVPSILAAD--FSRLGEEISNITKAGAKQIHFDV------MDGCFV--------PNIS--FGADVIRSLRS-YSDSVF 65 (224)
Q Consensus 5 ~~IspSil~~d--~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv--------pn~~--~~~~~i~~i~~-~t~~~~ 65 (224)
.-+.|=+.+.+ .....+.++.+.++|+|.+-+-+ +||--. .|-+ -..+.++.+|+ .++.|+
T Consensus 11 ~alI~yitaG~P~~e~s~~~~~~l~~~GadiiEiGiPFSDP~ADGpvIQ~a~~rAL~~g~~~~~~~~~~~~r~~~~~~pi 90 (257)
T PRK13131 11 MAFIPFVTLGDPNYELSFEIIKTLIISGVSALELGFAFSDPVADGITIQASHLRALKHASMAKNFQLLKKIRDYNHHIPI 90 (257)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCE
T ss_conf 45898861868998899999999997799999978998885545599999999999789889999999998704999888
Q ss_pred EEEEEE-EEC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCE-EE
Q ss_conf 856788-512------0336764047760799970664215899986776498259985233344789988620140-28
Q gi|254780975|r 66 DCHLMI-SSI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDM-IL 137 (224)
Q Consensus 66 dvHLMv-~~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~-vl 137 (224)
=+ |. -|| ++|++++.++|+|=+.+.=--.+.-....+.++++|...-.-+.|.|+-+.++.+....+- |-
T Consensus 91 vl--M~Y~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~s~GFiY 168 (257)
T PRK13131 91 GL--LAYANLIFSYGVDGFYAQAKECGVDSVLIADMPLIEKELVIKSAQKHQIKQIFIASPNASVKDLEQVATHSQGYIY 168 (257)
T ss_pred EE--ECCHHHHHHHCHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 99--9276899985799999999865998565589996788999999997798479972899988999999835897499
Q ss_pred EEEEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHH-----CCCCHHHH
Q ss_conf 99830677653--3220135778998654313865269815899-8899999967998999742663-----78998999
Q gi|254780975|r 138 IMTVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFF-----NQKGEISY 209 (224)
Q Consensus 138 iM~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif-----~~~d~~~~ 209 (224)
+.+ .+|-.|. .+.+..-+.++.+|+. .+.++.|-=||+ .+.+..+...|||-+|+||++. +..|....
T Consensus 169 ~vs-~~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~~~~gaDGvIVGSaiV~~I~~~~~~~~~~ 244 (257)
T PRK13131 169 TLA-RSGVTGASHTLENDASAIIKTLKTF---SPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLNNENAM 244 (257)
T ss_pred EEE-CCCCCCCCCCCCHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHH
T ss_conf 984-5767798643407699999999966---899879980579889999998559999998789999998727888999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780975|r 210 AKRLNDLKK 218 (224)
Q Consensus 210 ~~~l~~l~~ 218 (224)
.+++.+..+
T Consensus 245 ~~~i~~fv~ 253 (257)
T PRK13131 245 LEKIKGFIG 253 (257)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 35
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=98.85 E-value=2.6e-06 Score=60.60 Aligned_cols=203 Identities=18% Similarity=0.295 Sum_probs=140.7
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEECC---------CCCC--CHHHHHHHHH-CCCCEEE
Q ss_conf 81706325--889999999999965998999973------4263458---------4341--7899998641-2564168
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFVP---------NISF--GADVIRSLRS-YSDSVFD 66 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fvp---------n~~~--~~~~i~~i~~-~t~~~~d 66 (224)
+.|=+.+. |.....+.++.+.++|+|.+-+-+ .||-... .+++ -++.++.+|+ .++.|+=
T Consensus 11 li~yi~aG~P~~~~~~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~~piv 90 (258)
T pfam00290 11 FVPFVTAGDPDLETTLEILEALEEAGADAIELGIPFSDPLADGPTIQRANLRALAGGMTLDQTLELVEEIRNKGTSVPIV 90 (258)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 89887073899899999999999769999997899888766589999999999986996999999999855128998889
Q ss_pred EEEEEE-E------CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEE
Q ss_conf 567885-1------2033676404776079997066421589998677649825998523334478998862014-0289
Q gi|254780975|r 67 CHLMIS-S------IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILI 138 (224)
Q Consensus 67 vHLMv~-~------P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vli 138 (224)
+ |.= | .++|++.+.++|+|-+.+.==-.+.-.+..+.++++|..+-.-+.|.|+.+.+..+....+ +|-+
T Consensus 91 l--M~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~~l~~I~lvsPtt~~~Ri~~i~~~s~gFiY~ 168 (258)
T pfam00290 91 L--MTYYNPVLNYGIERFYAQAAEAGVDGLIIPDLPPEEADPLREAAEKHGIDLIFLVAPTTSDERLKTISEAASGFVYL 168 (258)
T ss_pred E--EEECHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEE
T ss_conf 9--85208898729999999999759977870799988999999999845843588845888199999999608980899
Q ss_pred EEEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHC-----CCCHHHHH
Q ss_conf 9830677653--3220135778998654313865269815899-88999999679989997426637-----89989999
Q gi|254780975|r 139 MTVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFN-----QKGEISYA 210 (224)
Q Consensus 139 M~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~-----~~d~~~~~ 210 (224)
++ .+|-.|. .+.+..-+.++++|+. .+..+.|-=||+ .+.+..+. .+||-+|+||++.+ ..++....
T Consensus 169 vs-~~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~~-~~aDGvIVGSaiv~~i~~~~~~~~~~~ 243 (258)
T pfam00290 169 VS-RAGVTGARNAFNAQLDELVERLKKY---TNVPVAVGFGISTPEHVKKIA-AGADGVIVGSAIVDIIEENLDDPEQML 243 (258)
T ss_pred EE-CCCCCCCCCCCCHHHHHHHHHHHHC---CCCCEEEEECCCCHHHHHHHH-CCCCEEEECHHHHHHHHHCCCCHHHHH
T ss_conf 85-3445676555638899999999860---699848994579999999998-159999984999999997040688999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780975|r 211 KRLNDL 216 (224)
Q Consensus 211 ~~l~~l 216 (224)
+.+.+.
T Consensus 244 ~~v~~f 249 (258)
T pfam00290 244 AKLEEF 249 (258)
T ss_pred HHHHHH
T ss_conf 999999
No 36
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.85 E-value=3e-06 Score=60.26 Aligned_cols=185 Identities=16% Similarity=0.150 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEE
Q ss_conf 25889999999999965998999973426345843417899998641256416856788512033676404776079997
Q gi|254780975|r 13 AADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFH 92 (224)
Q Consensus 13 ~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H 92 (224)
..|+.++ ++...+.|+|++|+==.|+.. .+..-..+.++++++.+..|+.+===+.+ ...++.+...|++.|++-
T Consensus 26 ~gdP~~~---a~~~~~~gadelhivDld~a~-~g~~~n~~~i~~i~~~~~~pi~vGGGIrs-~~~~~~~l~~GadkVvig 100 (243)
T cd04731 26 AGDPVEL---AKRYNEQGADELVFLDITASS-EGRETMLDVVERVAEEVFIPLTVGGGIRS-LEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCCHHHH---HHHHHHCCCCEEEEECCCCCC-CCCCCHHHHHHHHHHHCCCCEEEEEEEEE-HHHHHHHHHCCCCEEEEC
T ss_conf 8899999---999998699999997067320-37700799999999867986899850664-799999997799789989
Q ss_pred CCCCCCHHHHHHHHHHCCCE-EEEEEECC--------------------CCHHHHHHHHHH-CCEEEEEEEECCCCCCCC
Q ss_conf 06642158999867764982-59985233--------------------344789988620-140289983067765332
Q gi|254780975|r 93 PESSPHIRRSLRTIHAMGKK-TGVAINPE--------------------TPVAILEDVIDE-IDMILIMTVNPGFGGQQL 150 (224)
Q Consensus 93 ~E~~~~~~~~i~~i~~~g~k-~Giai~p~--------------------T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f 150 (224)
..+.++++-+-+.++..|.+ +-+++... ++.+.++.+.+. +..+++-.|+---.++.|
T Consensus 101 s~~~~n~~~~~~~~~~~Gsq~Iv~siD~k~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~G~geil~tdI~~DGt~~G~ 180 (243)
T cd04731 101 SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY 180 (243)
T ss_pred CCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf 84423771435788756993099999976537896289846984412678999999998469878999872576856657
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHH-HHHCCCCEEEECHHHHCCCCHHH
Q ss_conf 2013577899865431386526981589-9889999-99679989997426637899899
Q gi|254780975|r 151 IESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKS-LVQAGADLLVVGSSFFNQKGEIS 208 (224)
Q Consensus 151 ~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~-l~~~Gad~~V~Gsaif~~~d~~~ 208 (224)
+-+.++++.+ ..++++.+-||+ +.+.+.+ +...|++-+++|++++......+
T Consensus 181 d~~l~~~i~~------~~~~piI~sGGi~~~~di~~~l~~~~~~gv~~g~~~~~~~~~l~ 234 (243)
T cd04731 181 DLELIRAVSS------AVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIA 234 (243)
T ss_pred CHHHHHHHHH------HCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCCCHH
T ss_conf 9999999998------68999999889999999999998789829988227676998999
No 37
>PRK13118 consensus
Probab=98.83 E-value=1.4e-06 Score=62.43 Aligned_cols=191 Identities=16% Similarity=0.202 Sum_probs=134.8
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHC-CCCEEE
Q ss_conf 81706325--889999999999965998999973------426345---------84341--78999986412-564168
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSY-SDSVFD 66 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~-t~~~~d 66 (224)
+.|=+.+. |.-...+.++.+.++|+|.+-+-| .||--. .++++ .+++++++|+. ++.|+=
T Consensus 19 li~yitaG~P~~e~t~~~~~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~~~Piv 98 (269)
T PRK13118 19 LVPFVTAGDPSPEASVPLLHGLVAAGADVIELGMPFSDPMADGPAIQLASERALAAGQGLADVLQMVREFRQGDQTTPVV 98 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99887171899899999999999769999997898888666579999999999967986889999999986438999989
Q ss_pred EEEEEEE-----CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEE
Q ss_conf 5678851-----2033676404776079997066421589998677649825998523334478998862014-028998
Q gi|254780975|r 67 CHLMISS-----IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMT 140 (224)
Q Consensus 67 vHLMv~~-----P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~ 140 (224)
+=-+.+. .++|++.+.++|+|=+.+.==-.+.-.+..+.++++|...-.-+.|.|+.+.+..+..... +|-+.+
T Consensus 99 lM~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~ee~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs 178 (269)
T PRK13118 99 LMGYLNPIEIYGYERFVAQAKEAGVDGLILVDLPPEEADELRAPAQAHGLDFIRLTSPTTSDERLPRVLEHASGYLYYVS 178 (269)
T ss_pred EEEECCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHEEECCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 97400078786399999999985997464589997899999999997598464036989878999999843788389985
Q ss_pred EECCCCC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 3067765--33220135778998654313865269815899-88999999679989997426637
Q gi|254780975|r 141 VNPGFGG--QQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 141 V~PG~~G--q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
+. |-.| ..+.+...+.++++|+. .+..+.|-=||+ .+.+..+.+ +||-+|+||++.+
T Consensus 179 ~~-GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~~~~v~~-~aDGvIVGSa~Vk 238 (269)
T PRK13118 179 LA-GVTGAAALDTEHVEEAVARLRRH---TDLPVVVGFGIRDAESAAAIAR-LADGVVVGSALVD 238 (269)
T ss_pred CC-CCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHC-CCCEEEECHHHHH
T ss_conf 45-66787766719899999999962---5898178716799999999980-0999998589999
No 38
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.82 E-value=1.7e-06 Score=61.76 Aligned_cols=211 Identities=15% Similarity=0.266 Sum_probs=143.7
Q ss_pred CCCCEEECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEECC---------CCCCCHHHHHHHHHCCCC
Q ss_conf 97981881706325--889999999999965998999973------4263458---------434178999986412564
Q gi|254780975|r 1 MTPSIQIVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFVP---------NISFGADVIRSLRSYSDS 63 (224)
Q Consensus 1 M~k~~~IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fvp---------n~~~~~~~i~~i~~~t~~ 63 (224)
|+|+ -+.|=+.+. |.....+.++.+.++ +|.+-+.+ .||--.. ..++ .++++.+|+.++.
T Consensus 2 ~~r~-ali~yitaG~P~~e~s~~~l~~l~~~-aDiiElGiPfSDPvADGpvIq~A~~~Al~~g~~~-~~i~~~~r~~~~~ 78 (247)
T PRK13125 2 ISRP-GLGVYLTAGWPNAETFLEAIDGLVGL-VDFLELGIPPKNPKYDGPVIRKAHREVSYWGLDY-WSLLEEVRKKVGV 78 (247)
T ss_pred CCCC-EEEEEEECCCCCHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCH-HHHHHHHCCCCCC
T ss_conf 9886-58888718379989999999998647-9999979988987666099999999998769989-9999985056899
Q ss_pred EEEEEEEEE-E-----CCHHHHHHCCCCCCEEEEE---CCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC
Q ss_conf 168567885-1-----2033676404776079997---066421589998677649825998523334478998862014
Q gi|254780975|r 64 VFDCHLMIS-S-----IDSHINIIADAGCDIITFH---PESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID 134 (224)
Q Consensus 64 ~~dvHLMv~-~-----P~~~i~~~~~~g~d~i~~H---~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D 134 (224)
|+=+ |.= | .++|++.+.++|+|=+++. +|..++.....+.++++|...-.-+.|.|+-+.+..+.....
T Consensus 79 pivl--M~Y~N~~~~g~e~F~~~~~~~GvdGvIipDLP~e~~ee~~~~~~~~~~~gl~~I~lvsPtt~~~ri~~i~~~s~ 156 (247)
T PRK13125 79 PTYI--MTYLEDYVGSLDDLLNTAKEVGARGVLFPDLLIDFPDELEKYVELIRRYGLAPVFFTSPKFPDRLIRRLSKLSP 156 (247)
T ss_pred CEEE--HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 8897--29889999769999999998599758833888754678999999999769846999579981999999998689
Q ss_pred EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHC---CCCHHHHH
Q ss_conf 028998306776533220135778998654313865269815899-88999999679989997426637---89989999
Q gi|254780975|r 135 MILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFN---QKGEISYA 210 (224)
Q Consensus 135 ~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~---~~d~~~~~ 210 (224)
...-+++.+ -.|.....+.-+.++++|++.. +..+.|==||+ .+.+.++.+.|+|-+|+||++.+ .....+..
T Consensus 157 gFvY~~~~g-vTG~~~~~~~~~~i~~ik~~~~--~~Pv~vGFGI~t~e~v~~~~~~~aDGvIVGSaiVk~i~~~~~~~~~ 233 (247)
T PRK13125 157 LFIYLGLYP-ATGVELPVYVERNIKRVRELVG--DVYLVAGFAIDSPEDAAKALSAGADGVVVGTAFIRRLERNGVEEAL 233 (247)
T ss_pred CEEEEEEEC-CCCCCCCCCHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHH
T ss_conf 779999443-6788773259999999998569--9985883287999999999855899999878999999976989999
Q ss_pred HHHHHHHHH
Q ss_conf 999999997
Q gi|254780975|r 211 KRLNDLKKS 219 (224)
Q Consensus 211 ~~l~~l~~~ 219 (224)
+.+++|++.
T Consensus 234 ~~v~~l~~a 242 (247)
T PRK13125 234 SLLKEIRGA 242 (247)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 39
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.82 E-value=2.9e-06 Score=60.35 Aligned_cols=180 Identities=23% Similarity=0.262 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECC
Q ss_conf 88999999999996599899997342634584341789999864125641685678851203367640477607999706
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPE 94 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E 94 (224)
|+.++ .+...+.|++++|+==.||.+- +-.-..+.++++.+.+..|+.+-==+.+ ..-++.+.++|++.+++-.+
T Consensus 32 dP~~~---a~~~~~~Ga~~lhivDLd~a~~-g~~~n~~~I~~i~~~~~~pi~vGGGIrs-~~~i~~~l~~Ga~kvvigs~ 106 (240)
T PRK13585 32 DPVEV---AKRWVDAGAKTLHLVDLDGAFE-GSRKNADIIEKIVEATDVSIQLGGGIRS-VEDAASLLDLGVDRVILGTA 106 (240)
T ss_pred CHHHH---HHHHHHCCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHCCCCEEEECCC
T ss_conf 99999---9999987999799998977211-8944499999999737977899788587-99999999769989993981
Q ss_pred CCCCHHHHHHHHHHCCC-EEEEEEEC------------C---CCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHH
Q ss_conf 64215899986776498-25998523------------3---344789988620-1402899830677653322013577
Q gi|254780975|r 95 SSPHIRRSLRTIHAMGK-KTGVAINP------------E---TPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPK 157 (224)
Q Consensus 95 ~~~~~~~~i~~i~~~g~-k~Giai~p------------~---T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~k 157 (224)
+..+++-+-+..+..|. ++-+++.. . ++.+.++.+-+. +..+++..++---.++.+.-+.+++
T Consensus 107 ~~~~~~~~~~i~~~~G~~~ivvsiD~k~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~eii~tdI~~dGt~~G~d~~~~~~ 186 (240)
T PRK13585 107 AIENPELVRELSDEFGSERVMVSLDAKDGEVVIEGWTESTGKDPVEWAQRFEELGAGSILFTNVDVEGLLQGVNPEPVRE 186 (240)
T ss_pred CHHCCHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHCCCCHHHHHH
T ss_conf 13184288999987397217999993065023247656788635577788886387358986423322325789899999
Q ss_pred HHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 8998654313865269815899-88999999679989997426637899
Q gi|254780975|r 158 IRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 158 I~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
+.+ ..++++.+-|||+ .+.+..+.+.|++-+++|||++...=
T Consensus 187 i~~------~~~~pviasGGv~s~~di~~l~~~g~~gvivG~Al~~g~i 229 (240)
T PRK13585 187 LVD------SVDIPVIASGGVTSLDDVKALKEAGAAGVVVGSALYKGKF 229 (240)
T ss_pred HHH------HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCC
T ss_conf 998------6899999988999999999999789978998768767997
No 40
>PRK13136 consensus
Probab=98.81 E-value=5.3e-07 Score=65.05 Aligned_cols=191 Identities=21% Similarity=0.235 Sum_probs=137.6
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf 81706325--889999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC 67 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv 67 (224)
+.|=+.+. |.-...+.++.+.++|+|.+-+-| .||--. .++++ -+++++.+|+.++.|+=+
T Consensus 14 lI~yitaG~P~~e~s~~~~~~l~~~G~DiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~~pivl 93 (253)
T PRK13136 14 YVAYLTAGDGGLERSLESLLALAKGGVNILEVGVPFSDPVADGPVIQEASIRALAQGTTLHDVLTLITSFRQHSEIPIIL 93 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf 58886484899899999999999659998997899888666579999999999986997999999999822578988899
Q ss_pred EEEE-EEC-----CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEE
Q ss_conf 6788-512-----0336764047760799970664215899986776498259985233344789988620140289983
Q gi|254780975|r 68 HLMI-SSI-----DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTV 141 (224)
Q Consensus 68 HLMv-~~P-----~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V 141 (224)
|. -|| +++++++.++|+|-+.+.=--.+.-.+..+.+++.|...-.-+.|.|+.+.++.+.....-.+-+--
T Consensus 94 --M~Y~N~i~~~G~~f~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~~i~~I~liaPtt~~eRi~~i~~~a~gFiY~vs 171 (253)
T PRK13136 94 --FTYFNPLLAAGDKIYQQMKSAGVDGCLVVDLPVEEAAPHLTACKTAKIAPILLISPSTTQERLKKINEHGEGMLYYVC 171 (253)
T ss_pred --ECCCHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf --865179999799999999974987200678997776999999997588712552689988999999960898199985
Q ss_pred ECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 0677653--3220135778998654313865269815899-889999996799899974266378
Q gi|254780975|r 142 NPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQ 203 (224)
Q Consensus 142 ~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~ 203 (224)
.+|-.|. .+.+..-+.++++|+. .+..+.|-=||+ .+.++.+.+. ||.+|+||++.+.
T Consensus 172 ~~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~~~~-ADGvIVGSaiV~~ 232 (253)
T PRK13136 172 RPGTTGVRATLPENFPAKMNQIKSM---TSLPIVTGFGIANRKMAAQALQY-ADGFVIGSLFVKA 232 (253)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHH-CCEEEECHHHHHH
T ss_conf 5523687644638899999999972---69986997154999999999822-9999985899999
No 41
>PRK02145 consensus
Probab=98.81 E-value=1.9e-06 Score=61.58 Aligned_cols=204 Identities=13% Similarity=0.130 Sum_probs=135.6
Q ss_pred CCCCEEECHHHHCCCH--------------HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 9798188170632588--------------99999999999659989999734263458434178999986412564168
Q gi|254780975|r 1 MTPSIQIVPSILAADF--------------SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD 66 (224)
Q Consensus 1 M~k~~~IspSil~~d~--------------~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~d 66 (224)
|.| .+|.|+|.=.|- .+-.+..+...+.|+|++|+==.|+.+- +-....+.++.+++.+..|+.
T Consensus 2 ml~-kRiiPaidi~~g~~Vkg~~~~~~~~~gdP~~~a~~~~~~GadelhivDld~a~~-~~~~~~~~I~~i~~~~~iPi~ 79 (257)
T PRK02145 2 ALA-KRIIPCLDVTAGRVVKGVNFVELRDAGDPVEIARRYDEQGADELTFLDITATSD-GRDLILPIIEAVASQVFIPLT 79 (257)
T ss_pred CCC-CCEEEEEEEECCEEEECCCCCCEEECCCHHHHHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHHHHCCCCEE
T ss_conf 877-516999999999898577777738888999999999987999899997888766-754089999999965687489
Q ss_pred EEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCE-EEEEEEC---------------------CCC--
Q ss_conf 5678851203367640477607999706642158999867764982-5998523---------------------334--
Q gi|254780975|r 67 CHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKK-TGVAINP---------------------ETP-- 122 (224)
Q Consensus 67 vHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k-~Giai~p---------------------~T~-- 122 (224)
+===+.+ ...++.+.++|++.|++-..+.++++-+-+.++..|.+ +-+++.. .|.
T Consensus 80 vGGGIrs-~e~~~~ll~~GadkVii~s~a~~np~~v~~~~~~fG~q~Iv~siD~k~~~~~~~~~~~~v~~~~~~~~t~~~ 158 (257)
T PRK02145 80 VGGGVRA-VEDVRRLLNAGADKVSMNSSAVANPQLVRDAADKYGSQCIVVAIDAKRVSADGEPPRWEVFTHGGRKATGLD 158 (257)
T ss_pred EECCCCC-HHHHHHHHHCCCCEEEEHHHHHHCCCHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEEECCCEECCCCC
T ss_conf 6277304-688999998199889841556659302245787669834499999873367777750899977871436774
Q ss_pred -HHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCC-CCEEEECH
Q ss_conf -4789988620-14028998306776533220135778998654313865269815899-88999999679-98999742
Q gi|254780975|r 123 -VAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAG-ADLLVVGS 198 (224)
Q Consensus 123 -~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~G-ad~~V~Gs 198 (224)
.+.++.+.+. +..+++-.|+---..+.++-+.++++. + ..++++.+-||++ .+.+.++.+.| ++.++.||
T Consensus 159 ~~~~~~~~~~~G~geil~tdI~rDG~~~G~dl~l~~~i~---~---~~~ipvIasGGi~s~~di~~~~~~~~~~av~~g~ 232 (257)
T PRK02145 159 AVEWARKMAELGAGEILLTSMDRDGTKSGFDLALTRAVS---D---AVPVPVIASGGVGSLQHLADGITEGHADAVLAAS 232 (257)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHH---H---CCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEHH
T ss_conf 557656887618786899998477877888979999998---6---2699899986899999999999808984876532
Q ss_pred HHH-CCCCHHHHHHHH
Q ss_conf 663-789989999999
Q gi|254780975|r 199 SFF-NQKGEISYAKRL 213 (224)
Q Consensus 199 aif-~~~d~~~~~~~l 213 (224)
++. +.-++.+..+.|
T Consensus 233 ~~~~~~~~i~e~k~~l 248 (257)
T PRK02145 233 IFHYGEHTVGEAKRFM 248 (257)
T ss_pred HHHCCCCCHHHHHHHH
T ss_conf 6777998999999999
No 42
>PRK01659 consensus
Probab=98.80 E-value=2.8e-06 Score=60.40 Aligned_cols=204 Identities=16% Similarity=0.178 Sum_probs=134.7
Q ss_pred CCCCEEECHHHHCCC--------------HHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 979818817063258--------------899999999999659989999734263458434178999986412564168
Q gi|254780975|r 1 MTPSIQIVPSILAAD--------------FSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD 66 (224)
Q Consensus 1 M~k~~~IspSil~~d--------------~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~d 66 (224)
|-|| +|.|+|.=.| ..+-.+..+...+.|+|++|+==.|+.+-.+ .-..+.++++.+.+..|+.
T Consensus 1 Ml~k-RIIPaidi~~g~~Vkg~~~~~~~~~gDP~~~ak~~~~~Gad~ihivDld~a~~g~-~~n~~~I~~i~~~~~ipi~ 78 (252)
T PRK01659 1 MLTK-RIIPCLDVKEGRVVKGVNFVGLQDVGDPVEIAAAYNEAGADELVFLDITATHEGR-KTMVDVVEKVAAKVFIPLT 78 (252)
T ss_pred CCCC-CEEEEEEEECCEEEECCCCCCCEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHCCCCEE
T ss_conf 9876-2599999999999989577784687899999999998799999999467665688-6489999999975697479
Q ss_pred EEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCE-EEEEEEC------------------CC---CHH
Q ss_conf 5678851203367640477607999706642158999867764982-5998523------------------33---447
Q gi|254780975|r 67 CHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKK-TGVAINP------------------ET---PVA 124 (224)
Q Consensus 67 vHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k-~Giai~p------------------~T---~~~ 124 (224)
+===+.+ ...++.+..+|+|.|++-..+.++++-+-+.++..|.+ +-+++.. .| ..+
T Consensus 79 vGGGIrs-~e~~~~~l~~GadkViigs~a~~n~~~i~~~~~~~G~q~IvvsiD~k~~~~~~~~~i~~~g~~~~~~~~~~~ 157 (252)
T PRK01659 79 VGGGISS-VKDMKRLLRAGADKVSINSAAVLRPELITEGADHFGSQCIVVAIDAKYDAEAGKWNVYTHGGRVDTGLDAIA 157 (252)
T ss_pred EECCEEC-HHHHHHHHHCCCCEEEECHHHHHCHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCHHH
T ss_conf 9633200-688889874488559831777529153214676468632699999897056886899968995767777999
Q ss_pred HHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHH-HHCCCCEEEECHHHH
Q ss_conf 89988620-14028998306776533220135778998654313865269815899-8899999-967998999742663
Q gi|254780975|r 125 ILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSL-VQAGADLLVVGSSFF 201 (224)
Q Consensus 125 ~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l-~~~Gad~~V~Gsaif 201 (224)
.++.+.+. +..+++-.|+---..+.++-+.++++++ ..++++-+-||++ .+.+.++ ...+++-+++|++++
T Consensus 158 ~i~~~~~~g~geil~tdI~rDG~~~G~dl~l~~~i~~------~~~~PiIasGGi~~~~di~~l~~~~~v~gv~~g~~~~ 231 (252)
T PRK01659 158 WAKEAVRLGAGEILLTSMDADGTKNGFDLRLTKAISE------AVSVPVIASGGAGNADHMVEVFQKTTADAALAASIFH 231 (252)
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH------HCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEHHHHH
T ss_conf 9999997699779999881458547689899999998------6899999991799999999999748982655754777
Q ss_pred -CCCCHHHHHHHH
Q ss_conf -789989999999
Q gi|254780975|r 202 -NQKGEISYAKRL 213 (224)
Q Consensus 202 -~~~d~~~~~~~l 213 (224)
+.-++.+..+.|
T Consensus 232 ~~~~sl~e~k~~L 244 (252)
T PRK01659 232 YGETSIKEVKAKL 244 (252)
T ss_pred CCCCCHHHHHHHH
T ss_conf 7999999999999
No 43
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.80 E-value=2.5e-06 Score=60.70 Aligned_cols=182 Identities=14% Similarity=0.155 Sum_probs=129.7
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEE
Q ss_conf 06325889999999999965998999973426345843417899998641256416856788512033676404776079
Q gi|254780975|r 10 SILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDII 89 (224)
Q Consensus 10 Sil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i 89 (224)
-....|+.++.+.. .+.|++++|+==.|+.. .-.-..+.++.+.+.+..|+.+-==+.+ ...++.+..+|++.+
T Consensus 31 ~~~~~dP~~~a~~~---~~~ga~~lhivDLda~~--g~~~n~~~I~~i~~~~~~pi~vGGGIrs-~~~~~~~l~~Gadkv 104 (233)
T cd04723 31 LCSTSDPLDVARAY---KELGFRGLYIADLDAIM--GRGDNDEAIRELAAAWPLGLWVDGGIRS-LENAQEWLKRGASRV 104 (233)
T ss_pred CCCCCCHHHHHHHH---HHCCCCEEEEEECCCCC--CCCCHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHCCCCEE
T ss_conf 30587999999999---98798989999786546--9975399999999878998899702276-999999986072015
Q ss_pred EEECCCCCCHHHHHHHHHHCCC-EEEEEEEC-----------CCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHH
Q ss_conf 9970664215899986776498-25998523-----------33447899886201402899830677653322013577
Q gi|254780975|r 90 TFHPESSPHIRRSLRTIHAMGK-KTGVAINP-----------ETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPK 157 (224)
Q Consensus 90 ~~H~E~~~~~~~~i~~i~~~g~-k~Giai~p-----------~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~k 157 (224)
++-.++.++ ....+.+.+.|. ++-+++.. ..+.+.++.+-..+..++++.++---.+|.+.-+.+++
T Consensus 105 vigs~~~~~-~~~~~~~~~~g~~~ivvslD~k~~~~~~~~~~~~~~~~~~~~~~~~~eii~t~Id~dGt~~G~d~~l~~~ 183 (233)
T cd04723 105 IVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLER 183 (233)
T ss_pred ECCCHHCCC-HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHH
T ss_conf 245100499-8999999997899989999998997872464348999999999658959998643446567779999999
Q ss_pred HHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 899865431386526981589-98899999967998999742663789
Q gi|254780975|r 158 IRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 158 I~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
+.+ . .+.++.+-||| +.+.+..+.+.|++-+++|||++...
T Consensus 184 i~~---~---~~~pvi~sGGv~s~~di~~l~~~g~~gvivg~alh~g~ 225 (233)
T cd04723 184 LAA---R---ADIPVIAAGGVRSVEDLELLKKLGASGALVASALHDGG 225 (233)
T ss_pred HHH---H---CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCC
T ss_conf 998---6---89989998899999999999978998999863977899
No 44
>PRK13139 consensus
Probab=98.79 E-value=2.8e-06 Score=60.43 Aligned_cols=193 Identities=18% Similarity=0.248 Sum_probs=135.7
Q ss_pred CEEECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCE
Q ss_conf 81881706325--889999999999965998999973------426345---------84341--789999864125641
Q gi|254780975|r 4 SIQIVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSV 64 (224)
Q Consensus 4 ~~~IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~ 64 (224)
+..+.|=+.+. |.....+.++.+.++|+|.+-+-| .||--. .++++ -+++++.+|+.++.|
T Consensus 15 ~~~li~yitaG~P~~e~s~~~~~~l~~~GaDiiElGiPFSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~~~~~~~p 94 (254)
T PRK13139 15 DILLMTHIVLGYPSLQANREVIRAMVAGGVDLMELQIPFSEPMADGPVILKANQAALAGGFKVRECFDFAREVVAAFNIP 94 (254)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 92488785584899799999999999669999997898888666589999999999976997999999999997248976
Q ss_pred EEEEEEEE-E------CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EE
Q ss_conf 68567885-1------2033676404776079997066421589998677649825998523334478998862014-02
Q gi|254780975|r 65 FDCHLMIS-S------IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MI 136 (224)
Q Consensus 65 ~dvHLMv~-~------P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~v 136 (224)
+=+ |+= | .++|++++.++|++=+.++==-.+.-....+.++++|..+-.-+.|.|+.+.+..+....+ +|
T Consensus 95 ivl--M~Y~N~i~~~G~e~F~~~~~~~Gv~GvIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFi 172 (254)
T PRK13139 95 FLF--MTYYNILFKYGVERFIDEVADIGVKGLIVPDLPPEQAQDYIAQCRAKGMAPIGIYAPTSTDERMGKIAAAADGFI 172 (254)
T ss_pred EEE--EEEHHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 899--952599987099999999997599858647999788999999998469757999458999899999985169869
Q ss_pred EEEEEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 899830677653--3220135778998654313865269815899-889999996799899974266378
Q gi|254780975|r 137 LIMTVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQ 203 (224)
Q Consensus 137 liM~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~ 203 (224)
-+.++ .|-.|. .+.+...+.++.+|+. .+..+.|-=||+ .+.++ ....+||-+|+||++.+.
T Consensus 173 Y~vs~-~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~v~-~~~~~aDGvIVGSaiVk~ 237 (254)
T PRK13139 173 YCVAR-RGVTGSKTSFDEHVGAFLHRCRAA---TPLPLAVGFGVKSAADVD-YLKGKADIAVVGSQAIRL 237 (254)
T ss_pred EEEEC-CCCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHH-HHHCCCCEEEECHHHHHH
T ss_conf 99966-666798866458899999999855---899879973779999999-997169999988899999
No 45
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=98.78 E-value=6.6e-07 Score=64.46 Aligned_cols=190 Identities=19% Similarity=0.155 Sum_probs=119.7
Q ss_pred ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf 81706325889999999999965998999973426345843417899998641256416856788512033676404776
Q gi|254780975|r 7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC 86 (224)
Q Consensus 7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~ 86 (224)
|+|.-++ -.++.+.++++.++|++.+|+-.-+..... -.+..+.+++.+. ...+.|++++..... .+.|+
T Consensus 4 IT~~~~~--~~~~~~~l~~~l~~gv~~iqlR~k~~~~~~----~~~~a~~~~~~~~-~~~~~liInd~~~lA---~~~~~ 73 (196)
T cd00564 4 ITDRRLD--GEDLLEVVEAALKGGVTLVQLREKDLSARE----LLELARALRELCR-KYGVPLIINDRVDLA---LAVGA 73 (196)
T ss_pred ECCCCCC--CCHHHHHHHHHHHCCCCEEEECCCCCCHHH----HHHHHHHHHHHHH-HHCCEEEECCHHHHH---HHHCC
T ss_conf 8898646--514999999999859999998679989999----9999999999999-809979978869999---97399
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCC-CCHHHHHHHHHHHH
Q ss_conf 079997066421589998677649825998523334478998862-0140289983067765332-20135778998654
Q gi|254780975|r 87 DIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQL-IESTIPKIRQAKAL 164 (224)
Q Consensus 87 d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f-~~~~l~kI~~l~~~ 164 (224)
| -+|.................+..+|++.+ + .+.+..-.. .+|||.+=.|-|-.+-... -+..++.++++++.
T Consensus 74 d--GvHl~~~d~~~~~~r~~~~~~~iiG~S~h--~-~~e~~~a~~~g~DYi~~gpvf~T~tK~~~~~~~g~~~l~~~~~~ 148 (196)
T cd00564 74 D--GVHLGQDDLPVAEARALLGPDLIIGVSTH--S-LEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL 148 (196)
T ss_pred C--EEECCCCCCCHHHHHHHHCCCCEEEECCC--C-HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 8--79558466899999987288975882478--8-99999988709993886465578988887787788999999986
Q ss_pred HHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
Q ss_conf 31386526981589988999999679989997426637899899999999
Q gi|254780975|r 165 IGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLN 214 (224)
Q Consensus 165 ~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~ 214 (224)
.++++.+=||||.+|+.++.++|++.+.+.|+||+++||.++.+++.
T Consensus 149 ---~~~Pv~AiGGI~~~ni~~~~~~G~~giAv~s~i~~~~dp~~~~~~l~ 195 (196)
T cd00564 149 ---VEIPVVAIGGITPENAAEVLAAGADGVAVISAITGADDPAAAARELL 195 (196)
T ss_pred ---CCCCEEEECCCCHHHHHHHHHCCCCEEEEHHHHHCCCCHHHHHHHHH
T ss_conf ---79998998589999999999809999997299777999999999972
No 46
>PRK13135 consensus
Probab=98.78 E-value=2.4e-06 Score=60.90 Aligned_cols=191 Identities=17% Similarity=0.204 Sum_probs=134.4
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf 81706325--889999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC 67 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv 67 (224)
+.|=+.+. |.....+.++.+.++|+|.+-+-| .||--. ..+++ -.+.++.+|+.++.|+=+
T Consensus 19 li~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~Pivl 98 (267)
T PRK13135 19 LVTFITAGDPDLATTEALIPLLAESGADIIELGVPFSDPMADGPTIQLSSERALAAGTTLPRILAMVRSVRRRCQVPIVL 98 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 89887171899899999999999759999997899898666589999999999976984999999999863358998899
Q ss_pred EEEEEE-----CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEEE
Q ss_conf 678851-----2033676404776079997066421589998677649825998523334478998862014-0289983
Q gi|254780975|r 68 HLMISS-----IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMTV 141 (224)
Q Consensus 68 HLMv~~-----P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~V 141 (224)
=-+.+. .++|++.+.++|+|-+.+.==--+.-.+....++++|...-.-+.|.|+-+.++.+..... +|-+.++
T Consensus 99 M~Y~N~i~~yG~e~F~~~~~~~GvdGlIipDLP~ee~~~~~~~~~~~~l~~I~lvsPtt~~~Ri~~i~~~s~GFiY~Vs~ 178 (267)
T PRK13135 99 MGYYNPIFAYGLERFAADAAAAGVDGVLLVDLPPEEAEEFKACADRHGLDVIFLLTPTSDESRIRTVARLGRGFVYYVSV 178 (267)
T ss_pred EECCHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEC
T ss_conf 84230998846899999999749974763789978889999999872961899808989579999999618981899854
Q ss_pred ECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHC
Q ss_conf 0677653--32201357789986543138652698158998-8999999679989997426637
Q gi|254780975|r 142 NPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 142 ~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
. |-.|. .+.+..-+.++++|+. .+.++.|-=||+. +.+..+ ..+||-+|+||++.+
T Consensus 179 ~-GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~v~~i-~~~ADGvIVGSaiVk 237 (267)
T PRK13135 179 T-GVTGARSGVEATVGGNVAKIREK---ITVPVVVGFGISTPQQAADV-AAMADGVVVGSALVK 237 (267)
T ss_pred C-CCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEECCCCHHHHHHH-HCCCCEEEECHHHHH
T ss_conf 5-66677644448899999999860---68984898167999999999-805999998789999
No 47
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.77 E-value=2.7e-06 Score=60.54 Aligned_cols=183 Identities=15% Similarity=0.176 Sum_probs=128.0
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEE
Q ss_conf 63258899999999999659989999734263458434178999986412564168567885120336764047760799
Q gi|254780975|r 11 ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIIT 90 (224)
Q Consensus 11 il~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~ 90 (224)
....|+.++.+.. .+.|+|++|+==.|+.. .+-.-..+.++.|++.+..|+++-==+. -...++++.+.|++.++
T Consensus 26 ~~~gdP~~~a~~~---~~~g~d~l~i~DLdaa~-~~~~~n~~~I~~I~~~~~~pi~vGGGIr-s~~~~~~l~~~Ga~kvv 100 (234)
T cd04732 26 VYSDDPVEVAKKW---EEAGAKWLHVVDLDGAK-GGEPVNLELIEEIVKAVGIPVQVGGGIR-SLEDIERLLDLGVSRVI 100 (234)
T ss_pred EECCCHHHHHHHH---HHCCCCEEEEEECCCHH-HCCCCHHHHHHHHHHHCCCCEEECCCCC-CHHHHHHHHHCCCCEEE
T ss_conf 7579999999999---98699989999675303-0891159999999976795689737717-59999999864887189
Q ss_pred EECCCCCCHHHHHHHHHHCCC-EEEEEEEC---------------CCCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCH
Q ss_conf 970664215899986776498-25998523---------------3344789988620-140289983067765332201
Q gi|254780975|r 91 FHPESSPHIRRSLRTIHAMGK-KTGVAINP---------------ETPVAILEDVIDE-IDMILIMTVNPGFGGQQLIES 153 (224)
Q Consensus 91 ~H~E~~~~~~~~i~~i~~~g~-k~Giai~p---------------~T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~ 153 (224)
+-.++..+++-.-+.++..|. ++-+++.. -++.+.++.+.+. +..+++++|+---.++.+.-+
T Consensus 101 i~s~~~~~~~~~~~~~~~~G~q~iv~slD~k~~~~~~~~~~~~~~~~~~~~i~~~~~~g~geiilt~i~~dGt~~G~d~~ 180 (234)
T cd04732 101 IGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFE 180 (234)
T ss_pred ECCCHHHCHHHHHHHHHHCCCCCEEEEEEEECCCHHCCCCCEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHH
T ss_conf 71401108278999999829764699999751200016864001351699999997458646998764256653568999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 35778998654313865269815899-8899999967998999742663789
Q gi|254780975|r 154 TIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 154 ~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
.++++.+ ..+.++.+-||++ .+.+..+.+.|++-+++|||++...
T Consensus 181 ll~~i~~------~~~~p~i~~GGv~s~~di~~l~~~g~~gvivgsAlh~g~ 226 (234)
T cd04732 181 LYKELAA------ATGIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGK 226 (234)
T ss_pred HHHHHHH------HCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEHHHHCCC
T ss_conf 9999986------579989998189999999999977998999988987799
No 48
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.77 E-value=3.9e-06 Score=59.50 Aligned_cols=191 Identities=15% Similarity=0.148 Sum_probs=118.5
Q ss_pred ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf 81706325889999999999965998999973426345843417899998641256416856788512033676404776
Q gi|254780975|r 7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC 86 (224)
Q Consensus 7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~ 86 (224)
|+-.-++.+. + +.++...++|++++|+=-=+...-. -.+..+.+++.. .+ ...|.+++ .++.....|+
T Consensus 7 IT~~~~~~~~--~-~~v~~al~~Gv~~iQlR~K~~s~~e----~~~~~~~l~~~~-~~-~~~lIIND---~~dlA~~~~a 74 (202)
T PRK07695 7 ISNGHMSFEE--L-VAVAMQIESEVDYIHIREREKSAKE----LYEGVESLLKKG-VP-ASKLIIND---RVDIALLLNI 74 (202)
T ss_pred EECCCCCHHH--H-HHHHHHHHCCCCEEEECCCCCCHHH----HHHHHHHHHHHC-CC-CCEEEEEC---CHHHHHHCCC
T ss_conf 9799999789--9-9999999879999998899979999----999999999848-99-99899979---1999988499
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHH-HHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 079997066421589998677649825998523334478998-8620140289983067765332201357789986543
Q gi|254780975|r 87 DIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILED-VIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALI 165 (224)
Q Consensus 87 d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~-~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~ 165 (224)
|-+.+-.+... +.+.-+.. .+...|++.+ + ++.+.. .-..+||+.+=.+-|--+-....+..++.++++.+.
T Consensus 75 dGVHLGq~D~~-~~~~R~~~--~~~~IG~S~h--~-~~e~~~a~~~gaDYi~~Gpif~T~tK~~~~~~G~~~l~~~~~~- 147 (202)
T PRK07695 75 HRVQLGYRSFD-VKSVREKF--PYLHVGYSVH--S-LEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSEIARA- 147 (202)
T ss_pred CEEEECHHHCC-HHHHHHHC--CCCEEEEECC--C-HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHH-
T ss_conf 98921821219-99999877--9989999579--9-9999999776999699725412688889887899999999986-
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 13865269815899889999996799899974266378998999999999999
Q gi|254780975|r 166 GKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK 218 (224)
Q Consensus 166 ~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~ 218 (224)
.++++..=||||.+|+..+.++|++.+.+-|+||+++||.+++++++++.+
T Consensus 148 --~~iPvvAIGGI~~~ni~~v~~~Ga~giAvis~I~~a~dp~~~~~~l~~~i~ 198 (202)
T PRK07695 148 --LSIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFSSSNPYSKAKRYKESIR 198 (202)
T ss_pred --CCCCEEEECCCCHHHHHHHHHCCCCEEEEHHHHHCCCCHHHHHHHHHHHHH
T ss_conf --799989986989999999998299999971897769999999999999999
No 49
>PRK13119 consensus
Probab=98.76 E-value=6.4e-06 Score=58.14 Aligned_cols=189 Identities=20% Similarity=0.260 Sum_probs=133.9
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHH-CCCCEEE
Q ss_conf 81706325--889999999999965998999973------426345---------84341--7899998641-2564168
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRS-YSDSVFD 66 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~-~t~~~~d 66 (224)
+.|=+.+. |.....+.++.+.++|+|.+-+-+ .||--. ..+++ -.++++++|+ .++.|+=
T Consensus 17 li~yltaG~P~~e~s~~~l~~l~~~GadiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~piv 96 (261)
T PRK13119 17 LIPYITVGDPDIRTTLALMHGMVANGADILELGVPFSDPMADGPVIQRAAERALANGISLRDVLDVVRKFRETDTQTPVV 96 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf 89886483899899999999999669999997898888666589999999999977997889999999865148998989
Q ss_pred EEEEEE-EC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEE
Q ss_conf 567885-12------033676404776079997066421589998677649825998523334478998862014-0289
Q gi|254780975|r 67 CHLMIS-SI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILI 138 (224)
Q Consensus 67 vHLMv~-~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vli 138 (224)
+ |.= || ++|++++.++|+|=+++.=--.+.-+...+.++++|...-.-+.|.|+-+.++.+..... +|-+
T Consensus 97 l--MtY~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~ee~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFiY~ 174 (261)
T PRK13119 97 L--MGYLNPVHKMGYREFAQEAAKAGVDGVLTVDSPVETIDPLYRELKDNGVDCIFLIAPTTTEDRIKTIAELAGGFVYY 174 (261)
T ss_pred E--EECHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEE
T ss_conf 9--84037898862999999999759857983689978879999999975997644307999899999999728981999
Q ss_pred EEEECCCCC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHC
Q ss_conf 983067765--332201357789986543138652698158998-8999999679989997426637
Q gi|254780975|r 139 MTVNPGFGG--QQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 139 M~V~PG~~G--q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
+++. |-.| +.+.+...++++.+|+. .+.++.|-=||+. +.+..+ ..+||-+|+||++.+
T Consensus 175 vs~~-GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~-~~~aDGvIVGSaiV~ 236 (261)
T PRK13119 175 VSLK-GVTGAASLDTDEVSRKIEYLHQY---IDIPIGVGFGISNAESARKI-GRVADAVIVGSRIVK 236 (261)
T ss_pred EECC-CCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEECCCCHHHHHHH-HCCCCEEEECHHHHH
T ss_conf 7366-66687755548899999999863---69987998365999999998-734999998289999
No 50
>PRK13113 consensus
Probab=98.75 E-value=1e-05 Score=56.83 Aligned_cols=210 Identities=19% Similarity=0.238 Sum_probs=139.4
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHC-CCCEEE
Q ss_conf 81706325--889999999999965998999973------426345---------84341--78999986412-564168
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSY-SDSVFD 66 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~-t~~~~d 66 (224)
+.|=+.+. |.....+.++.+.++|+|.+-+-+ .||--. ..+++ ..++++++|+. .+.|+=
T Consensus 19 li~yitaG~P~~e~s~~~~~~l~~~GaDiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~~~Piv 98 (263)
T PRK13113 19 FVAYVMAGDPDYDTSLEVMRGLPAAGVDIIELGMPFTDPMADGPTIQLAGQRALEGGMTLDRTLDMVRAFRKEDDTTPIV 98 (263)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf 89887382899799999999999769999997898888776589999999999977983889999999751238998889
Q ss_pred EEEEE-EEC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEE
Q ss_conf 56788-512------033676404776079997066421589998677649825998523334478998862014-0289
Q gi|254780975|r 67 CHLMI-SSI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILI 138 (224)
Q Consensus 67 vHLMv-~~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vli 138 (224)
+ |. -|| ++|++.+.++|+|=+.+.=--.+.-.+..+.++++|...-.-+.|.|+.+.+..+....+ +|-+
T Consensus 99 l--M~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gFiY~ 176 (263)
T PRK13113 99 M--MGYYNPIYSRGVDRFLAEAKEAGIDGLIVVDLPPEEDSELCLPAQAAGLNFIRLATPTTDDRRLPKVLQNTSGFVYY 176 (263)
T ss_pred E--EECHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEEE
T ss_conf 9--83136898856999999987779436971799978889999999977986799947999999999998338984899
Q ss_pred EEEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHC---C-CCHHHHHHH
Q ss_conf 9830677653--322013577899865431386526981589988999999679989997426637---8-998999999
Q gi|254780975|r 139 MTVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFN---Q-KGEISYAKR 212 (224)
Q Consensus 139 M~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~---~-~d~~~~~~~ 212 (224)
.++. |-.|. .+.....+.++++|+. .+.++.|-=||+...-......+||-+|+||++.+ . .+..+..+-
T Consensus 177 Vs~~-GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~~~~~~~~ADGvIVGSa~v~~i~e~~~~~~~~~~ 252 (263)
T PRK13113 177 VSIT-GITGAAAAQAADVAPEVARIKAA---TDLPVIVGFGITTPEAAQAIAGVADGCVVGSAIVKLIGEGRPVAEVLAF 252 (263)
T ss_pred EECC-CCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHHHCCCCEEEECHHHHHHHHHCCCHHHHHHH
T ss_conf 8345-56687755437799999999854---7998899837899899999973399999868999999828998999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999997862
Q gi|254780975|r 213 LNDLKKSALA 222 (224)
Q Consensus 213 l~~l~~~a~a 222 (224)
+++|+...-|
T Consensus 253 v~~l~~~~~~ 262 (263)
T PRK13113 253 VATLADGAHA 262 (263)
T ss_pred HHHHHHHHHC
T ss_conf 9999998741
No 51
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.74 E-value=8.1e-06 Score=57.49 Aligned_cols=187 Identities=15% Similarity=0.102 Sum_probs=129.0
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 99999999965998999973426345843417899998641256416856788512033676404776079997066421
Q gi|254780975|r 19 LGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPH 98 (224)
Q Consensus 19 l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~ 98 (224)
-.+..+...+.|+|++|+==.||.+-. -....+.++.+.+.+..|+.+===+.+ ...++++...|+|.|++-.-+..+
T Consensus 33 P~~~a~~~~~~Gad~lhlvDld~a~~~-~~~n~~~I~~i~~~~~vpiqvGGGIrs-~e~~~~ll~~GadkViigS~a~~n 110 (252)
T PRK13597 33 PVEAARAYDEAGADELVFLDISATHEE-RAILLDVVARVAERVFIPLTVGGGVRS-LEDARKLLLSGADKVSVNSAAVRR 110 (252)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCC-CHHHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHCCCCEEEECHHHHHC
T ss_conf 999999999869999999956466668-663799999998626982898477130-899999985698779832666749
Q ss_pred HHHHHHHHHHCCCE-EEEEEEC----------------CC---CHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHH
Q ss_conf 58999867764982-5998523----------------33---44789988620-1402899830677653322013577
Q gi|254780975|r 99 IRRSLRTIHAMGKK-TGVAINP----------------ET---PVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPK 157 (224)
Q Consensus 99 ~~~~i~~i~~~g~k-~Giai~p----------------~T---~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~k 157 (224)
++-+-+.++..|.+ +-+++.- .| +++.+..+.+. +..+++=.|+---.++.++-+.+++
T Consensus 111 p~~i~~~~~~fG~q~Iv~~iD~~~~~~~~~v~~~~~~~~~~~~~~d~~~~~~~~G~geil~tdI~rDGt~~G~d~~l~~~ 190 (252)
T PRK13597 111 PELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRM 190 (252)
T ss_pred CHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEECCCEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHH
T ss_conf 37899999874996529999888618974167538727569769999999996489999997573768444769599999
Q ss_pred HHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf 8998654313865269815899-8899999967998999742663789989999999
Q gi|254780975|r 158 IRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL 213 (224)
Q Consensus 158 I~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l 213 (224)
+++ ..++++.+-||+. .+.+.++.+.|++-+++|++++..+.....+++.
T Consensus 191 i~~------~~~~pvIasGGv~s~~dl~~l~~~g~~gvi~G~al~~~~~s~~e~k~~ 241 (252)
T PRK13597 191 VAE------AVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPELKRY 241 (252)
T ss_pred HHH------CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCCCCCHHHHHHH
T ss_conf 985------079989997898999999999878996998712767799999999999
No 52
>PRK04281 consensus
Probab=98.74 E-value=1.1e-05 Score=56.68 Aligned_cols=188 Identities=14% Similarity=0.128 Sum_probs=128.4
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 99999999965998999973426345843417899998641256416856788512033676404776079997066421
Q gi|254780975|r 19 LGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPH 98 (224)
Q Consensus 19 l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~ 98 (224)
-.+..+...+.|+|++|+==.|+.+- +-....+.++++.+.+..|+.+===+.+ ...++++..+|+|.|++-..+.++
T Consensus 32 P~~~ak~~~~~GadelhivDld~a~~-~~~~~~~~I~~i~~~~~vpi~vGGGIrs-~e~~~~ll~~GadkViigs~a~~n 109 (254)
T PRK04281 32 PVEAAKRYNGEGADELTFLDITASSD-NRDTILHIIEEVAGQVFIPLTVGGGVRT-VADIRRLLNAGADKVSINTAAVTR 109 (254)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHHHHCCCCEEEECCEEE-CHHHHHHHHCCCCEEEECHHHHHC
T ss_conf 99999999986999999996889877-7530899999998507962899777545-188999997699889977767649
Q ss_pred HHHHHHHHHHCCCE-EEEEEEC-------------------CC---CHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHH
Q ss_conf 58999867764982-5998523-------------------33---44789988620-1402899830677653322013
Q gi|254780975|r 99 IRRSLRTIHAMGKK-TGVAINP-------------------ET---PVAILEDVIDE-IDMILIMTVNPGFGGQQLIEST 154 (224)
Q Consensus 99 ~~~~i~~i~~~g~k-~Giai~p-------------------~T---~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~ 154 (224)
++-+-+.++..|.+ +-+++.. .| +.+.+..+.+. +..+++-.|+---..+.++-+.
T Consensus 110 p~~l~~~~~~fG~q~Iv~siD~k~~~~~~~~~~i~~~g~~~~t~~~~~~~~~~~~~~g~geil~tdI~rDGt~~G~d~~l 189 (254)
T PRK04281 110 PDLIDEAAGFFGSQAIVAAVDAKAVNPENTRWEIFTHGGRNPTGLDAVEWAVEMQKRGAGEILLTGMDRDGTKQGFNLPL 189 (254)
T ss_pred CHHHHHHHHHCCCEEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH
T ss_conf 26767678755982179999888502468845999758864775449999999875299899998885788768768699
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCC-CCEEEECHHHH-CCCCHHHHHHHHH
Q ss_conf 577899865431386526981589-988999999679-98999742663-7899899999999
Q gi|254780975|r 155 IPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAG-ADLLVVGSSFF-NQKGEISYAKRLN 214 (224)
Q Consensus 155 l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~G-ad~~V~Gsaif-~~~d~~~~~~~l~ 214 (224)
++++++ ..++++.+-||+ +.+.+.++.+.| ++.++.|+++. +.-++.++.+.++
T Consensus 190 ~~~i~~------~~~iPvIasGGv~~~~di~~~~~~~~~~~v~~g~~~~~~~~sl~eak~~l~ 246 (254)
T PRK04281 190 TRAVAE------AVDIPVIASGGVGNVRHLIEGITEGKADAVLAAGIFHFGEIAIREAKRAMR 246 (254)
T ss_pred HHHHHH------HCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHCCCCCHHHHHHHHH
T ss_conf 999986------169989997898999999999980898889764377779989999999999
No 53
>PRK13140 consensus
Probab=98.73 E-value=5.3e-06 Score=58.66 Aligned_cols=203 Identities=15% Similarity=0.184 Sum_probs=136.0
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEECC---------CCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf 81706325--889999999999965998999973------4263458---------4341--789999864125641685
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFVP---------NISF--GADVIRSLRSYSDSVFDC 67 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fvp---------n~~~--~~~~i~~i~~~t~~~~dv 67 (224)
++|=+.+. |.-...+-++.+.++|+|.+-+-+ .||--.. .+++ -.+.++.+|+.++.|+=+
T Consensus 16 li~y~taG~P~~~~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pivl 95 (257)
T PRK13140 16 LSIYFTAGYPTLEDTVSIIKDLEKHGVDMIEIGIPFSDPLADGPVIQKSATQALKNGMTLKLLFEQLKDIRKEVQIPLIL 95 (257)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 68888182898799999999999759999997898898776589999999999986998999999999974368988899
Q ss_pred EEEEE-EC------CHHHHHHCCCCCCEEEEE---CCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EE
Q ss_conf 67885-12------033676404776079997---066421589998677649825998523334478998862014-02
Q gi|254780975|r 68 HLMIS-SI------DSHINIIADAGCDIITFH---PESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MI 136 (224)
Q Consensus 68 HLMv~-~P------~~~i~~~~~~g~d~i~~H---~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~v 136 (224)
|.= || ++|++.+.++|+|-+.+. +|. ..+.....++++|...-.-+.|.|+.+.++.+.+..+ +|
T Consensus 96 --M~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~ee--~~~~~~~~~~~~~i~~I~lvaPtt~~~Ri~~i~~~a~gFi 171 (257)
T PRK13140 96 --MGYLNPIMQYGFEKFCKKCAETGIDGVIIPDLPFDD--YQEHYKEIFEKYGLKNIMLITPQTSEERIREIDSHTDGFI 171 (257)
T ss_pred --EECHHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHH--HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCE
T ss_conf --905599985179999999998499869835998567--5899999999869977998689998999999997399966
Q ss_pred EEEEEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHC----CCCHHHH
Q ss_conf 899830677653--3220135778998654313865269815899-88999999679989997426637----8998999
Q gi|254780975|r 137 LIMTVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFN----QKGEISY 209 (224)
Q Consensus 137 liM~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~----~~d~~~~ 209 (224)
-+.++ +|-.|. .+.+...+.++++|++. .+..+.|-=||+ .+.++.+ ..+||-+|+||++.+ +.|+.+.
T Consensus 172 Y~vs~-~GvTG~~~~~~~~~~~~i~~ik~~~--~~~Pv~vGFGIs~~e~v~~~-~~~aDGvIVGSaivk~i~e~~~~~~~ 247 (257)
T PRK13140 172 YMVSS-ASTTGAQQDFNNQKRAYFKRIKDMN--LKNPRMVGFGISNKATFNAA-CEYASGAIIGSAFVKLLKEEKNPEKA 247 (257)
T ss_pred EECCC-CCCCCCCCCCCHHHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHH-HHCCCEEEECHHHHHHHHHCCCHHHH
T ss_conf 87036-5666887665156899999999827--89986998057989999999-83199999879999999877987899
Q ss_pred -HHHHHHHH
Q ss_conf -99999999
Q gi|254780975|r 210 -AKRLNDLK 217 (224)
Q Consensus 210 -~~~l~~l~ 217 (224)
.+-+++||
T Consensus 248 v~~fv~~lk 256 (257)
T PRK13140 248 ILKFVKEIK 256 (257)
T ss_pred HHHHHHHHC
T ss_conf 999999962
No 54
>PRK02747 consensus
Probab=98.73 E-value=6.7e-06 Score=58.03 Aligned_cols=204 Identities=15% Similarity=0.137 Sum_probs=134.1
Q ss_pred CCCCEEECHHHHCCCH--------------HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 9798188170632588--------------99999999999659989999734263458434178999986412564168
Q gi|254780975|r 1 MTPSIQIVPSILAADF--------------SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD 66 (224)
Q Consensus 1 M~k~~~IspSil~~d~--------------~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~d 66 (224)
|.| |+|.|+|.=.|- .+-.+..+...+.|+|+||+==.|+.+- +-.-..+.++++++.+..|+.
T Consensus 1 Mlk-~rIIPaidi~~g~~Vkg~~~~~~~~~gdP~~~ak~~~~~Gadelh~vDl~~a~~-~~~~~~~lI~~i~~~~~ipi~ 78 (257)
T PRK02747 1 MLK-VRVIPCLDVKDGRVVKGVNFVDLRDAGDPVEAARAYDAAGADELCFLDITASHE-NRGTMLDVVARTAEQCFMPLT 78 (257)
T ss_pred CCC-CEEEEEEEEECCEEEECCCCCCEEECCCHHHHHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHHHHCCCCEE
T ss_conf 987-559999999999998587777707888999999999986999899994767756-755289999999986699889
Q ss_pred EEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCE-EEEEEECC---------------------CC--
Q ss_conf 5678851203367640477607999706642158999867764982-59985233---------------------34--
Q gi|254780975|r 67 CHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKK-TGVAINPE---------------------TP-- 122 (224)
Q Consensus 67 vHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k-~Giai~p~---------------------T~-- 122 (224)
+===+.+ ...++.+..+|+|.|++-.-+..+++-+-+.++..|.+ +-+++... |.
T Consensus 79 vGGGIrs-~e~~~~ll~~GadkViigs~a~~np~l~~~~~~~fG~q~Iv~siD~k~~~~~~~~~~~~i~~~~~~~~t~~~ 157 (257)
T PRK02747 79 VGGGVRT-VDDIRKLLLAGADKVSINSAAVARPEFVAEAADKFGSQCIVVAIDAKRVSPAGENDRWEIFTHGGRKPTGID 157 (257)
T ss_pred EECCCCC-HHHHHHHHHCCCCEEEECHHHHHCCHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCEECCCH
T ss_conf 8488207-388789987699689834446548347777887559657999998775157677873899988984634303
Q ss_pred -HHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHH-HHHCCCCEEEECH
Q ss_conf -4789988620-14028998306776533220135778998654313865269815899-889999-9967998999742
Q gi|254780975|r 123 -VAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKS-LVQAGADLLVVGS 198 (224)
Q Consensus 123 -~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~-l~~~Gad~~V~Gs 198 (224)
.+.+..+.+. +..+++=.|+---..+.++-+.++++.+ ..++++.+=||++ .+.+.+ +...+++.++.||
T Consensus 158 ~~~~~~~~~~~G~geil~tdI~rDG~~~G~dl~l~~~i~~------~~~~pvIasGGv~~~~di~~~~~~~~~~av~~g~ 231 (257)
T PRK02747 158 AVEFAQKVVSLGAGEILLTSMDRDGTKAGFDLPLTRAIAD------AVRVPVIASGGVGTLDHLVEGVRDGHATAVLAAS 231 (257)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH------CCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEHH
T ss_conf 9999999997099889999883557326788699999986------0799899977999999999999838984998832
Q ss_pred HHH-CCCCHHHHHHHH
Q ss_conf 663-789989999999
Q gi|254780975|r 199 SFF-NQKGEISYAKRL 213 (224)
Q Consensus 199 aif-~~~d~~~~~~~l 213 (224)
++. +.-++.++.+.|
T Consensus 232 ~~~~~~~~l~~ak~~L 247 (257)
T PRK02747 232 IFHFGTYTIGEAKAHM 247 (257)
T ss_pred HHHCCCCCHHHHHHHH
T ss_conf 6776998999999999
No 55
>PRK13134 consensus
Probab=98.73 E-value=4.9e-06 Score=58.87 Aligned_cols=201 Identities=18% Similarity=0.221 Sum_probs=137.5
Q ss_pred ECHHHHCCC--HHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf 817063258--89999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r 7 IVPSILAAD--FSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC 67 (224)
Q Consensus 7 IspSil~~d--~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv 67 (224)
+.|=+.+.+ .....+.++.+.++|+|.+-+-| .||--. ..+++ -.+.++.+|+..+.|+
T Consensus 21 li~yitaG~P~~e~s~~~i~~l~~~GaDiiEiGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~~~~~~~pi-- 98 (257)
T PRK13134 21 LIPFLTAGFPTSERFWDELEALDAAGADIIEVGVPFSDPVADGPVVAAASQRALESGVTLRWIMDGLAARKGRLRAGL-- 98 (257)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCE--
T ss_conf 998870707997999999999997799999978988887655899999999999679987899999998744689998--
Q ss_pred EEEEE-EC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEE
Q ss_conf 67885-12------033676404776079997066421589998677649825998523334478998862014-02899
Q gi|254780975|r 68 HLMIS-SI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIM 139 (224)
Q Consensus 68 HLMv~-~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM 139 (224)
=||.= || ++|++.+.++|+|-+.++==-.+.-......++++|...-.-+.|.|+-+.+..+..... +|-++
T Consensus 99 vlMtY~N~i~~yG~e~F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~s~gFIY~v 178 (257)
T PRK13134 99 VLMGYLNPFMQYGFERFVRDAADAGVAGCIIPDLPLDEDADLRALLAARGMDLIALVGPNTGEGRMREYAAVASGYVYVV 178 (257)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 99853459997468999999986798759946999778899999999759826996389999999999996288808998
Q ss_pred EEECCCCCCC--CCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHC----CCCHHHHHHH
Q ss_conf 8306776533--2201357789986543138652698158998-8999999679989997426637----8998999999
Q gi|254780975|r 140 TVNPGFGGQQ--LIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFN----QKGEISYAKR 212 (224)
Q Consensus 140 ~V~PG~~Gq~--f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~----~~d~~~~~~~ 212 (224)
++ .|-.|.. +.....+.++++|+. .+..+.|-=||+. +.++.+ ..+||-+|+||++.+ ..|..+..++
T Consensus 179 s~-~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~-~~~aDGvIVGSaiVk~i~~~gd~a~~~k~ 253 (257)
T PRK13134 179 SV-MGTTGVRDGLPVEVADTLARARQC---FSIPVALGFGISRPAQLEGL-SHPPDAVIFGSALLRHLDAGGDAASFMKA 253 (257)
T ss_pred EC-CCCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHH-HCCCCEEEECHHHHHHHHHCCCHHHHHHH
T ss_conf 43-556687645528899999999970---69987998067999999999-70399999879999999978988999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780975|r 213 LN 214 (224)
Q Consensus 213 l~ 214 (224)
+.
T Consensus 254 ~~ 255 (257)
T PRK13134 254 WA 255 (257)
T ss_pred HH
T ss_conf 74
No 56
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=98.72 E-value=2.3e-06 Score=61.00 Aligned_cols=183 Identities=17% Similarity=0.191 Sum_probs=128.1
Q ss_pred HHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCH
Q ss_conf 99999999659989999734263458434178999986412564168567885120336764047760799970664215
Q gi|254780975|r 20 GEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHI 99 (224)
Q Consensus 20 ~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~ 99 (224)
.+.+++..++|++.+|+=.-|...-. + .+..+.+++.+ ...++-|++++..+..- +.++|-| |....+-+
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~---~-~~~a~~~~~lc-~~~~v~liINd~~dlA~---~~~AdGV--HlGq~D~~ 93 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEE---Y-LALAEKLRALC-QKYGVPLIINDRVDLAL---AVGADGV--HLGQDDMP 93 (211)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCHHH---H-HHHHHHHHHHH-HHHCCEEEECCCHHHHH---HCCCCEE--EECCCCCC
T ss_conf 99999999679949998028987499---9-99999999999-98198099668399997---6799889--70876545
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 899986776498259985233344789988620-1402899830677653322013577899865431386526981589
Q gi|254780975|r 100 RRSLRTIHAMGKKTGVAINPETPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV 178 (224)
Q Consensus 100 ~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv 178 (224)
......+...+...|++.+ +.+....-... +|||-+=.+-|--+-..--+.-++.++++++... +.+.+=||+
T Consensus 94 ~~~ar~~~~~~~iIG~S~h---~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~---iP~vAIGGi 167 (211)
T COG0352 94 LAEARELLGPGLIIGLSTH---DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVN---IPVVAIGGI 167 (211)
T ss_pred HHHHHHHCCCCCEEEEECC---CHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCC---CCEEEECCC
T ss_conf 5889974199978983049---9999999876399999988867889998877467899999998279---998998488
Q ss_pred CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9889999996799899974266378998999999999999
Q gi|254780975|r 179 TSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK 218 (224)
Q Consensus 179 n~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~ 218 (224)
|.+|++.+.++||+.+.+-|+||.++|+..+.+++.+..+
T Consensus 168 ~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~ 207 (211)
T COG0352 168 NLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALE 207 (211)
T ss_pred CHHHHHHHHHHCCCEEEEHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999999998298769726686607988999999999987
No 57
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.71 E-value=6.3e-06 Score=58.19 Aligned_cols=182 Identities=13% Similarity=0.130 Sum_probs=116.8
Q ss_pred HHHHHHHHCCCCEEEEEEECCEECCCCCCC--HHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 999999965998999973426345843417--899998641256416856788512033676404776079997066421
Q gi|254780975|r 21 EEISNITKAGAKQIHFDVMDGCFVPNISFG--ADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPH 98 (224)
Q Consensus 21 ~~i~~l~~~~~d~iHiDImDg~fvpn~~~~--~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~ 98 (224)
+-++++.++|++++++=--+ .+-. ....+.+++.+ ...++.|.+++ .++.....++|= +|.--.+-
T Consensus 23 ~~ve~al~gGv~~vQlR~K~------~~~~e~~~~a~~~~~l~-~~~~v~lIIND---~vdlA~~~~AdG--VHLGq~Dl 90 (211)
T PRK03512 23 QWIERLLDAGVRTLQLRIKD------RRDEEVEADVVAAIALG-RRYNARLFIND---YWRLAIKHQAYG--VHLGQEDL 90 (211)
T ss_pred HHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHHHH-HHHCCEEEEEC---CHHHHHHCCCCE--EECCCCCC
T ss_conf 99999998799999981799------99999999999999999-98098599978---689999719988--96596536
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 58999867764982599852333447899886201402899830677653-32201357789986543138652698158
Q gi|254780975|r 99 IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQ-QLIESTIPKIRQAKALIGKRSISLEVDGG 177 (224)
Q Consensus 99 ~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq-~f~~~~l~kI~~l~~~~~~~~~~I~vDGG 177 (224)
+......+...+...|++.+ +..+...-.-...|||-+=.+-|-.+-. +.-+..++.+++..+. ..++++..=||
T Consensus 91 ~~~~aR~~lg~~~iIG~S~h--~~~e~~~A~~~gaDYig~Gpif~T~TK~~~~~p~G~~~l~~~~~~--~~~iPvvAIGG 166 (211)
T PRK03512 91 ETTDLNAIRAAGLRLGVSTH--DDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVER--LADYPTVAIGG 166 (211)
T ss_pred CHHHHHHHCCCCCEEEEECC--CHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH--CCCCCEEEECC
T ss_conf 88999986699978997429--999999998649983998563345887899887249999999997--17999899889
Q ss_pred CCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99889999996799899974266378998999999999999
Q gi|254780975|r 178 VTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK 218 (224)
Q Consensus 178 vn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~ 218 (224)
||.+|+.++.++|++.+.+=|+||.++||.++.++|.+|..
T Consensus 167 I~~~n~~~v~~~Ga~gvAViSaI~~a~dp~~a~~~l~~l~~ 207 (211)
T PRK03512 167 ISLERAPAVLATGVGSIAVVSAITQAADWRLATAQLLEIAG 207 (211)
T ss_pred CCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHC
T ss_conf 68999999998399999995187469999999999999863
No 58
>PRK13124 consensus
Probab=98.69 E-value=1.2e-05 Score=56.34 Aligned_cols=202 Identities=14% Similarity=0.234 Sum_probs=136.5
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf 81706325--889999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC 67 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv 67 (224)
+.|=+.+. |.-...+.++.+.++|+|.+-+.+ .||-.. .++++ -+++++.+|+.++.|+=+
T Consensus 11 li~yitaG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~pivl 90 (257)
T PRK13124 11 FIPFITAGDPDPETTIDLVLALEEAGADILELGIPYSDPLADGPVIQRASKRALNGGMNIVKAMELVGKMRKKVTIPIVY 90 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 89886370899899999999999769999997898888776579999999999976996899999999852447888899
Q ss_pred EEEEE-E------CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEE
Q ss_conf 67885-1------2033676404776079997066421589998677649825998523334478998862014-02899
Q gi|254780975|r 68 HLMIS-S------IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIM 139 (224)
Q Consensus 68 HLMv~-~------P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM 139 (224)
|.= | .++|++.+.++|++=+.+.=--.+......+.++++|...-.-+.| |+-+.+..+....+ +|-++
T Consensus 91 --M~Y~N~i~~~G~e~F~~~~~~~Gv~GvIipDLP~eE~~~~~~~~~~~gl~~I~lvaP-Ts~~Ri~~i~~~s~gFiY~v 167 (257)
T PRK13124 91 --FTYYNPVLQYGLEKFFALARENGIDGLLIPDLPLEESGELQEICDKYGIYLIPLVAP-TSKERIKKIAEQAEGFVYCV 167 (257)
T ss_pred --EEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECC-CCHHHHHHHHHCCCCCEEEE
T ss_conf --750078987579999999997599847778999799999999998668735788479-96799999985489838996
Q ss_pred EEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHC----CCCHHHHHHH
Q ss_conf 830677653--322013577899865431386526981589-988999999679989997426637----8998999999
Q gi|254780975|r 140 TVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFN----QKGEISYAKR 212 (224)
Q Consensus 140 ~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~----~~d~~~~~~~ 212 (224)
+ ..|-.|. .+.+..-+.++++|++ .+..+.|-=|| +.+.++.+.+ +||-+|+||++.+ ..+..+..+.
T Consensus 168 s-~~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~v~~~~~-~ADGvIVGSaivk~i~~~~~~~~~~~~ 242 (257)
T PRK13124 168 S-SLGVTGVREEIETDLEEFIRTVKQY---SNVPVAVGFGISTPEQVQKMKE-IADGVVVGSALVEKIEEPEEREEALAE 242 (257)
T ss_pred E-CCCCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEECCCCHHHHHHHHH-HCCEEEECHHHHHHHHHCCCHHHHHHH
T ss_conf 2-4666787655608899999999861---7998389844699999999980-199999828999999856875789999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780975|r 213 LNDL 216 (224)
Q Consensus 213 l~~l 216 (224)
+.++
T Consensus 243 v~~f 246 (257)
T PRK13124 243 VEEF 246 (257)
T ss_pred HHHH
T ss_conf 9999
No 59
>PRK13116 consensus
Probab=98.66 E-value=8e-06 Score=57.54 Aligned_cols=192 Identities=19% Similarity=0.228 Sum_probs=133.5
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHH-CCCCEEE
Q ss_conf 81706325--889999999999965998999973------426345---------84341--7899998641-2564168
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRS-YSDSVFD 66 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~-~t~~~~d 66 (224)
+.|=+.+. |...-.+.++.+.++|+|.+-+-+ +||--. ..+++ -+++++.+|+ +++.|+-
T Consensus 19 lI~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDP~ADGPvIQ~A~~rAL~~G~~~~~~~~~v~~ir~~~~~~Piv 98 (278)
T PRK13116 19 FVPFIMLSDPSPEEAFQIISTAIEAGADALELGVPFSDPVADGPTVAESHLRALDGGATVDSALEQIKRVRAAYPEVPIG 98 (278)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEE
T ss_conf 89885484899899999999999669999997999888566689999999999976986789999999840358987689
Q ss_pred EEEEEEE-----CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEE
Q ss_conf 5678851-----2033676404776079997066421589998677649825998523334478998862014-028998
Q gi|254780975|r 67 CHLMISS-----IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMT 140 (224)
Q Consensus 67 vHLMv~~-----P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~ 140 (224)
.=.+.+. .++|++++.++|+|=+.+.=--.+.-....+.++++|...-.-+.|.|+-+.+..+....+ +|-+.+
T Consensus 99 lM~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~eE~~~~~~~~~~~~i~~I~l~~ptt~~~ri~~I~~~s~GFiY~VS 178 (278)
T PRK13116 99 MLIYGNVPFTRGLDRFYQEFAEAGADSILLPDVPVREGAPFSAAAAAAGIDPIYIAPANASEKTLEGVSAASKGYIYAIS 178 (278)
T ss_pred EEECCCHHHHCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 98057288772799999999776975899469997888999999986576669993799959999999971897399986
Q ss_pred EECCCCCC--CCCCH-HHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHC
Q ss_conf 30677653--32201-357789986543138652698158998-8999999679989997426637
Q gi|254780975|r 141 VNPGFGGQ--QLIES-TIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 141 V~PG~~Gq--~f~~~-~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
+ .|-.|. ...+. .-+.|+++|+. .+.++.|-=||+. +.+.+....+||-+|+||++.+
T Consensus 179 ~-~GvTG~~~~~~~~~l~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~~~~~aDGVIVGSAiVk 240 (278)
T PRK13116 179 R-DGVTGTERESSTDGLSAVVDNIKKF---DGAPILLGFGISSPQHVADAIAAGASGAITGSAITK 240 (278)
T ss_pred C-CCCCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 3-5222688666678999999999845---799879981679899999998668999998779999
No 60
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.64 E-value=8.5e-06 Score=57.36 Aligned_cols=188 Identities=18% Similarity=0.202 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCC
Q ss_conf 99999999999659989999734263458434178999986412564168567885120336764047760799970664
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESS 96 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~ 96 (224)
-+|.+-++...++|++.+++=--+...-. -.+.-+.+++.+ ...++-+.|+| .++-....|+|= +|.-..
T Consensus 155 ~~l~~~Ve~AL~gGv~ivQlR~K~~~~~~----~l~~A~~l~~Lc-~~y~a~fIIND---rvDlAlav~ADG--VHLGQ~ 224 (345)
T PRK02615 155 EDLLEVVEAALKAGVKLVQYRDKTGDDRE----RLEEAKQLKELC-KRYGALFIVND---RVDIALAVDADG--VHLGQE 224 (345)
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCHHH----HHHHHHHHHHHH-HHHCCEEEEEC---CHHHHHHCCCCE--EEECCC
T ss_conf 34999999999759988983058999999----999999999999-99599489819---699999749987--755888
Q ss_pred CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 21589998677649825998523334478998862014028998306776533220135778998654313865269815
Q gi|254780975|r 97 PHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDG 176 (224)
Q Consensus 97 ~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG 176 (224)
+-+......+-..+.-.|++. .++-+...-.-..+||+-+=.+-|-.+-..-.+-.++.++++++. .++++..=|
T Consensus 225 Dlpi~~aR~llG~~~iIG~S~--h~~ee~~~A~~~gaDYig~Gpvf~T~TK~~~~p~Gl~~l~~~~~~---~~iPvvAIG 299 (345)
T PRK02615 225 DLPLAVARQLLGPEKIIGRST--TNPEELAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYARKE---ANIPWFAIG 299 (345)
T ss_pred CCCHHHHHHHCCCCCEEEECC--CCHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCHHHHHHHHHH---CCCCEEEEC
T ss_conf 789999998739991899617--999999999863999799887742588888887899999999983---799999999
Q ss_pred CCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 8998899999967998999742663789989999999999997
Q gi|254780975|r 177 GVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKS 219 (224)
Q Consensus 177 Gvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~~ 219 (224)
|||.+|+..+.++|++.+.+=|+|+.++||.++++.|.+..+.
T Consensus 300 GI~~~N~~~v~~aGa~gvAVisAI~~A~DP~~aa~~ll~~l~~ 342 (345)
T PRK02615 300 GIDKSNISEVLQAGADRVAVVRAIMNAEDPKQATQELLEQLSR 342 (345)
T ss_pred CCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 9699999999985999999822855799999999999999730
No 61
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.64 E-value=1e-05 Score=56.86 Aligned_cols=176 Identities=14% Similarity=0.152 Sum_probs=122.9
Q ss_pred HHHHHHHH-CCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCH
Q ss_conf 99999996-59989999734263458434178999986412564168567885120336764047760799970664215
Q gi|254780975|r 21 EEISNITK-AGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHI 99 (224)
Q Consensus 21 ~~i~~l~~-~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~ 99 (224)
+.+....+ .|++|+|+==.||-+...- -..+.++.|++.++.|+.+===+. -..-++.+.++|+++|++-..+.+++
T Consensus 35 ~~~~~~~~~~Ga~~lHvVDLdgA~~g~~-~n~~~I~~i~~~~~~~iqvGGGIR-s~e~i~~~l~~G~~rViigT~a~~~~ 112 (234)
T PRK13587 35 ESIAYYSQFECVNRIHIVDLIGAKAQHA-REFDYIKSLRRLTTKDIEVGGGIR-TKSQIMDYFAAGINYCIVGTKGIQDT 112 (234)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCC-CHHHHHHHHHHHCCCCEEEECCCC-CHHHHHHHHHCCCCEEEECCCCCCCH
T ss_conf 9999999838998899997876468974-379999999843798679846547-59999999976899999888130286
Q ss_pred HHHHHHHHHCCCEEEEEEEC------------C---CCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89998677649825998523------------3---344789988620-1402899830677653322013577899865
Q gi|254780975|r 100 RRSLRTIHAMGKKTGVAINP------------E---TPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKA 163 (224)
Q Consensus 100 ~~~i~~i~~~g~k~Giai~p------------~---T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~ 163 (224)
+-+-+.++..+.++-+++.- . ++.+.++.+-+. +..+++-.|+---.-|.++-+.++++.+
T Consensus 113 ~~l~~~~~~f~~~Ivv~iD~~~~~v~~~GW~~~s~~~~~d~~~~~~~~g~~~il~TdI~rDGtl~G~n~el~~~i~~--- 189 (234)
T PRK13587 113 DWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVK--- 189 (234)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCEEEECCCCEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH---
T ss_conf 99999998666776871202385454457514258679999999974398789984026657455799999999997---
Q ss_pred HHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 4313865269815899-8899999967998999742663789
Q gi|254780975|r 164 LIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 164 ~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
..++++.+-|||+ .+.+..|.+.|++-+|+|.||+...
T Consensus 190 ---~~~~pvIaSGGv~sl~Di~~L~~~gv~GvIvGkAlYeg~ 228 (234)
T PRK13587 190 ---ATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQAS 228 (234)
T ss_pred ---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf ---679999998998999999999988998999997501782
No 62
>PRK13121 consensus
Probab=98.62 E-value=1.6e-05 Score=55.53 Aligned_cols=191 Identities=17% Similarity=0.240 Sum_probs=130.1
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHC-CCCEEE
Q ss_conf 81706325--889999999999965998999973------426345---------84341--78999986412-564168
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSY-SDSVFD 66 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~-t~~~~d 66 (224)
+.|=+.+. |.....+.+..+.++|+|.+-+-+ +||--. .++++ -+++++++|+. ++.|+=
T Consensus 19 li~y~taG~P~~~~s~~~~~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~~Piv 98 (265)
T PRK13121 19 LIPFITAGDPDPAKTVELMHALVEGGADVIELGVPFSDPMADGPVIQRASERALAHGVSLRQVLAMVKEFRETNQTTPVV 98 (265)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf 89887071899899999999999769999997898899776589999999999977998467799999831037999989
Q ss_pred EEEEEEE-----CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEE
Q ss_conf 5678851-----2033676404776079997066421589998677649825998523334478998862014-028998
Q gi|254780975|r 67 CHLMISS-----IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMT 140 (224)
Q Consensus 67 vHLMv~~-----P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~ 140 (224)
+=-+.+. .++|++.+.++|+|=+.+.==-.+.-.+..+.++++|...-.-+.|.|+-+.++.+....+ +|-+++
T Consensus 99 lM~Y~N~i~~yG~e~F~~~~~~aGvdGlIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~~~gFiY~Vs 178 (265)
T PRK13121 99 LMGYANPIERMGYDAFAAAARAAGVDGVLVVDYPPEECEEFAAKMRAAGIDPIFLLAPTSTDERIAAVARVASGYVYYVS 178 (265)
T ss_pred EEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 86214599997199999999872987343489998999999999986599668995899989999999962898099975
Q ss_pred EECCCCC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHC
Q ss_conf 3067765--332201357789986543138652698158998-8999999679989997426637
Q gi|254780975|r 141 VNPGFGG--QQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 141 V~PG~~G--q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
+. |-.| ..+.+..-+.++++|+. .++++.|-=||+. +.+..+ ..+||-+|+||++.+
T Consensus 179 ~~-GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~~~~v-~~~ADGvIVGSaiV~ 238 (265)
T PRK13121 179 LK-GVTGAATLDVSSVAAKLPAIRSH---VPLPVGVGFGIRDAATARAV-AEVADAVVIGSRLVQ 238 (265)
T ss_pred CC-CCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHH-HHCCCEEEECHHHHH
T ss_conf 55-56677756628899999999854---79985997688989999999-811999998489999
No 63
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.60 E-value=1.4e-05 Score=55.97 Aligned_cols=176 Identities=15% Similarity=0.084 Sum_probs=119.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEEC
Q ss_conf 58899999999999659989999734263458434178999986412564168567885120336764047760799970
Q gi|254780975|r 14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHP 93 (224)
Q Consensus 14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~ 93 (224)
.|+.+ ..+...+.|+|++|+==.|+.+- +..-..+.++.|++.+..|+.+===+.+ ...++.+.+.|++.|++-.
T Consensus 30 gdP~~---~ak~~~~~g~d~lhivDld~a~~-~~~~n~~~I~~i~~~~~ipi~vGGGIrs-~e~~~~ll~~GadkViigs 104 (232)
T TIGR03572 30 GDPVN---AARIYNAKGADELIVLDIDASKR-GREPLFELISNLAEECFMPLTVGGGIRS-LEDAKKLLSLGADKVSINT 104 (232)
T ss_pred CCHHH---HHHHHHHCCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCEEEEECEEE-HHHHHHHHHCCCCEEEECH
T ss_conf 89999---99999986999999996876434-8821799999999972985899713303-8999999976996899345
Q ss_pred CCCCCHHHHHHHHHHCCCE-EEEEEEC---------------C---CC--H-HHHHHHHH-HCCEEEEEEEECCCCCCCC
Q ss_conf 6642158999867764982-5998523---------------3---34--4-78998862-0140289983067765332
Q gi|254780975|r 94 ESSPHIRRSLRTIHAMGKK-TGVAINP---------------E---TP--V-AILEDVID-EIDMILIMTVNPGFGGQQL 150 (224)
Q Consensus 94 E~~~~~~~~i~~i~~~g~k-~Giai~p---------------~---T~--~-~~i~~~l~-~~D~vliM~V~PG~~Gq~f 150 (224)
.+.+++.-+-+.++..|.+ +-+++.. . |. + +.+..+.+ -+-.+++-.|+---..+.+
T Consensus 105 ~a~~~p~~~~~~~~~~G~q~ivvsiD~k~~~~~~~~~v~~~g~~~~~~~~~~~~i~~~~~~g~geii~tdI~~DG~~~G~ 184 (232)
T TIGR03572 105 AALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKGY 184 (232)
T ss_pred HHHHCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf 45219357789999869945899999841677872799966776357987999999987359989999888576856768
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHH-HCCCCEEEECHHH
Q ss_conf 20135778998654313865269815899-88999999-6799899974266
Q gi|254780975|r 151 IESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLV-QAGADLLVVGSSF 200 (224)
Q Consensus 151 ~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~-~~Gad~~V~Gsai 200 (224)
+-+.+++++ + ..+.++.+-||++ .+.+.++. ..|++-+++||..
T Consensus 185 d~~l~~~i~---~---~~~~piiasGGi~~~~di~~l~~~~~~~gv~~gs~f 230 (232)
T TIGR03572 185 DLELIKTVS---D---AVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred CHHHHHHHH---H---HCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECC
T ss_conf 999999999---8---689999998898999999999985898199972114
No 64
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.60 E-value=3.5e-05 Score=53.47 Aligned_cols=186 Identities=16% Similarity=0.143 Sum_probs=123.0
Q ss_pred HHHHHHHHHHCCCCEEEE-EEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 999999999659989999-7342634584341789999864125641685678851203367640477607999706642
Q gi|254780975|r 19 LGEEISNITKAGAKQIHF-DVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSP 97 (224)
Q Consensus 19 l~~~i~~l~~~~~d~iHi-DImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~ 97 (224)
..+..+...+.|+|++|+ |+ |+.. .+-....+.++++.+.+..|+.+===+. -...++++..+|+|.|++-..+..
T Consensus 32 P~~~a~~~~~~gadel~ivDl-d~s~-~~~~~~~~~I~~i~~~~~~pi~vGGGIr-s~e~~~~ll~~GadkVvigs~a~~ 108 (253)
T PRK02083 32 PVELAKRYDEEGADELVFLDI-TASS-EGRDTMKDVVERVAEQVFIPLTVGGGIR-SVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred HHHHHHHHHHCCCCEEEEEEC-CCCC-CCCHHHHHHHHHHHHHCCCCEEEECCCC-CHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 999999999879998999956-2664-5774179999999986398778517621-389876898779878999984653
Q ss_pred CHHHHHHHHHHCCCE-EEEEEEC------------------CCC---HHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHH
Q ss_conf 158999867764982-5998523------------------334---4789988620-1402899830677653322013
Q gi|254780975|r 98 HIRRSLRTIHAMGKK-TGVAINP------------------ETP---VAILEDVIDE-IDMILIMTVNPGFGGQQLIEST 154 (224)
Q Consensus 98 ~~~~~i~~i~~~g~k-~Giai~p------------------~T~---~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~ 154 (224)
+++-+-+.++..|.+ .-+++.. .|+ .+.++.+.+. +..+++-.|+---..+.++-+.
T Consensus 109 ~p~~i~~~~~~~G~q~Iv~siD~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~g~geil~tdI~rDG~~~G~d~~l 188 (253)
T PRK02083 109 DPELITELADRFGSQCIVVAIDAKRDGEPGRWEVFTHGGRKPTGIDAVEWAKEVQELGAGEILLTSMDQDGTKNGYDLEL 188 (253)
T ss_pred CCCHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH
T ss_conf 85355788974698359999998873768718999807841255239999999875698789999885558667889999
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCC-HHHHHH-HHHCCCCEEEECHHHH-CCCCHHHHHHHH
Q ss_conf 5778998654313865269815899-889999-9967998999742663-789989999999
Q gi|254780975|r 155 IPKIRQAKALIGKRSISLEVDGGVT-SRNIKS-LVQAGADLLVVGSSFF-NQKGEISYAKRL 213 (224)
Q Consensus 155 l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~-l~~~Gad~~V~Gsaif-~~~d~~~~~~~l 213 (224)
+++++. ..++++-+-||++ .+.+.+ +...|++-+++||+++ +.-.+.+..+.|
T Consensus 189 ~~~i~~------~~~iPiI~sGGv~s~~di~~~l~~~~i~gv~~G~~~~~~~~sl~~~k~~L 244 (253)
T PRK02083 189 TRAVRD------AVSVPVIASGGAGNLEHFAEAFTEGGADAALAASVFHFGEITIGELKAYL 244 (253)
T ss_pred HHHHHH------HCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHHHHHHH
T ss_conf 999997------57999999889999999999998679809987127776999999999999
No 65
>PRK13114 consensus
Probab=98.59 E-value=5.1e-05 Score=52.39 Aligned_cols=191 Identities=19% Similarity=0.199 Sum_probs=132.7
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHC-CCCEEE
Q ss_conf 81706325--889999999999965998999973------426345---------84341--78999986412-564168
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSY-SDSVFD 66 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~-t~~~~d 66 (224)
+.|=+.+. |.....+.++.+.++|+|.+-+-+ .||--. .++++ -++.++.+|+. ++.|+=
T Consensus 15 li~yitaG~P~~~~t~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~rAL~~G~~l~~~f~~v~~~r~~~~~~Piv 94 (266)
T PRK13114 15 LVAFITGGDPTPGDTAANLDALVAGGADVIELGMPFTDPMADGPAIQAANLRSLAAGTTTADIFRIAAEFRQRHPEVPLV 94 (266)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 89887071899899999999999769999997999888677689999999999986997999999999987418998879
Q ss_pred EEEEEEE-----CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEE
Q ss_conf 5678851-----2033676404776079997066421589998677649825998523334478998862014-028998
Q gi|254780975|r 67 CHLMISS-----IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMT 140 (224)
Q Consensus 67 vHLMv~~-----P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~ 140 (224)
+=-+.+. +++|++.+.++|+|=+.+.==-.+.-.++...++++|...-.-+.|.|+-+.+..+....+ +|-+.+
T Consensus 95 lM~Y~N~i~~~G~~~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~gi~~I~liaPtt~~~Ri~~i~~~a~gFiY~vs 174 (266)
T PRK13114 95 LMGYANPMVRRGPDWFAAECKKAGVDGVICVDIPPEEDAELGPALRAAGIDPIRLATPTTDAARLPAVLEGASGFLYYVS 174 (266)
T ss_pred EEEEHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 98630199986499999999974997798458997888999999997499726775699979999999973899589984
Q ss_pred EECCCCC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 3067765--33220135778998654313865269815899-88999999679989997426637
Q gi|254780975|r 141 VNPGFGG--QQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 141 V~PG~~G--q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
+. |-.| +.+.+..-+.++++|+. .+..+.|-=||+ .+.+..+.+ .||-+|+||++.+
T Consensus 175 ~~-GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~~~~~~~-~ADGvIVGSaiVk 234 (266)
T PRK13114 175 VA-GITGMQQAAQASIEAAVARIKAA---TDLPVAVGFGVRTPEQAAAIAR-VADGVVVGSAFVD 234 (266)
T ss_pred CC-CCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHH-CCCEEEECHHHHH
T ss_conf 45-56677656658899999999970---7998699836698999999980-0999998199999
No 66
>PRK13112 consensus
Probab=98.59 E-value=1.3e-05 Score=56.24 Aligned_cols=191 Identities=17% Similarity=0.187 Sum_probs=131.5
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHH-CCCCEEE
Q ss_conf 81706325--889999999999965998999973------426345---------84341--7899998641-2564168
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRS-YSDSVFD 66 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~-~t~~~~d 66 (224)
+.|=+.+. |.....+.++.+.++|+|.+-+-| .||--. ..+++ .+++++.+|+ ..+.|+=
T Consensus 20 li~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~Piv 99 (279)
T PRK13112 20 LVTYFMGGDPDLETSLKIMKALPKAGADIIELGMPFSDPMADGPAIQAAGLRALKAGQTLAKTLYLAREFRKDDDTTPIV 99 (279)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf 89886073899789999999998779998997899898666579999999999976996889999999851348998879
Q ss_pred EEEEEEE-----CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEE
Q ss_conf 5678851-----2033676404776079997066421589998677649825998523334478998862014-028998
Q gi|254780975|r 67 CHLMISS-----IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMT 140 (224)
Q Consensus 67 vHLMv~~-----P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~ 140 (224)
+=-+.+. .++|++++.++|+|=+.+.=--.+.-.++...++++|...-.-+.|.|+-+.+..+..... +|-+.+
T Consensus 100 lM~Y~N~i~~~G~e~F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~~i~~I~lvaPtt~~eRi~~i~~~s~GFiY~Vs 179 (279)
T PRK13112 100 LMGYYNPIYIYGVERFLTDAKAAGVDGLIVVDLPPEMDAELCIPAMKAGINFIRLATPTTDDKRLPKVLANTSGFVYYVS 179 (279)
T ss_pred EEEECHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 98512499884799999999973998798469997888999999985783469982589989999999852788089983
Q ss_pred EECCCCC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 3067765--33220135778998654313865269815899-88999999679989997426637
Q gi|254780975|r 141 VNPGFGG--QQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 141 V~PG~~G--q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
+ .|-.| ..+.+...+.|+++|+. .+.++.|-=||+ .+.+.. ...+||-+|+||++.+
T Consensus 180 ~-~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~~~~-~~~~aDGvIVGSAiVk 239 (279)
T PRK13112 180 M-TGITGSALADTSAVGEAVARIKRH---TDLPVCVGFGVKTPEQARA-IAAHADGVVVGTAIVN 239 (279)
T ss_pred C-CCCCCCCCCCHHHHHHHHHHHHHH---CCCCCEEEECCCCHHHHHH-HHCCCCEEEECHHHHH
T ss_conf 5-666676645648899999999971---7898767835699999999-9725999998779999
No 67
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.57 E-value=1.6e-05 Score=55.57 Aligned_cols=178 Identities=15% Similarity=0.168 Sum_probs=121.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEEC
Q ss_conf 58899999999999659989999734263458434178999986412564168567885120336764047760799970
Q gi|254780975|r 14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHP 93 (224)
Q Consensus 14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~ 93 (224)
.|+.++.+ ...+.|++++|+==.|+.+ +-.-..+.++++++.+..|+++===+.+. .-++.+..+|++.|++-.
T Consensus 29 ~dP~~~a~---~~~~~Ga~~lhvvDLdaa~--g~~~N~~~I~~i~~~~~~piqvGGGIrs~-e~~~~~l~~Ga~kViigS 102 (231)
T PRK13586 29 GDPLKIAE---ELYNEGYDSIHVVDLDAAE--GKGDNEEYIKRICKIGFSWIQVGGGIRDV-EKAERLLSYDCSAIVMST 102 (231)
T ss_pred CCHHHHHH---HHHHCCCCEEEEEECCCCC--CCCCHHHHHHHHHHHCCCCEEEECCCCCH-HHHHHHHHCCCCEEEECH
T ss_conf 89999999---9998799989999671568--99843999999997459857985671769-999999977998899768
Q ss_pred CCCCCHHHHHHHHHHCCC-EEEEEEE--CC----------C---CHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHH
Q ss_conf 664215899986776498-2599852--33----------3---44789988620-140289983067765332201357
Q gi|254780975|r 94 ESSPHIRRSLRTIHAMGK-KTGVAIN--PE----------T---PVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIP 156 (224)
Q Consensus 94 E~~~~~~~~i~~i~~~g~-k~Giai~--p~----------T---~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~ 156 (224)
.+.++++.+.+.++..|. ++-+++. .. + ..+.+..+.+. +-.+++..|+---..|.++.+.++
T Consensus 103 ~a~~np~~~~~~~~~~G~~~iv~siD~~~~~~v~~~Gw~~~~~~~~~~i~~~~~~g~~~ii~TdI~~DGt~~G~d~~l~~ 182 (231)
T PRK13586 103 LPFTNPDTFRRIVAGIGENRVLVSVDYDDRKYVLIKGWKEKSMKVEDAISHVNSLESLGVIFTYVCNEGTKNGIDNNVKR 182 (231)
T ss_pred HHHHCHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHCCCCCCHHHHH
T ss_conf 88769599999999849966899999758968998487268866999999999759988999764511203689989999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 78998654313865269815899-8899999967998999742663789
Q gi|254780975|r 157 KIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 157 kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
+++..+ ...+ +-|||+ .+.+.++.+.|++-+++|+|+|...
T Consensus 183 ~i~~~~------~~~i-~aGGi~s~~Di~~L~~~G~~gaivG~Aly~G~ 224 (231)
T PRK13586 183 YVKLVK------GEKE-YAGGIGSIQDLQKLKKMGFDYAIVGMSFYAGV 224 (231)
T ss_pred HHHHCC------CCCE-EECCCCCHHHHHHHHHCCCCEEEEEHHHHCCC
T ss_conf 998718------9959-98688999999999867998899997886882
No 68
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.57 E-value=3.8e-05 Score=53.18 Aligned_cols=209 Identities=17% Similarity=0.243 Sum_probs=141.9
Q ss_pred EECHHHHCCC--HHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHH-CCCCEE
Q ss_conf 8817063258--89999999999965998999973------426345---------84341--7899998641-256416
Q gi|254780975|r 6 QIVPSILAAD--FSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRS-YSDSVF 65 (224)
Q Consensus 6 ~IspSil~~d--~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~-~t~~~~ 65 (224)
-+.|=+.+.| .-...+.++.|.++|+|.|-+-+ .||-.. .+.+. -+++++.+|+ .++.|+
T Consensus 18 a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pi 97 (265)
T COG0159 18 ALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPI 97 (265)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCE
T ss_conf 74888948899989999999999867988899668888867668899998999997799889999999999861899988
Q ss_pred EEEEEEEEC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC-CEEEE
Q ss_conf 856788512------03367640477607999706642158999867764982599852333447899886201-40289
Q gi|254780975|r 66 DCHLMISSI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEI-DMILI 138 (224)
Q Consensus 66 dvHLMv~~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~-D~vli 138 (224)
=+ |+--|| ++|++.+.++|+|-+.+.==-.+...++...++++|..+-.-..|.|+-+.++.+.... .+|-+
T Consensus 98 vl-m~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~ 176 (265)
T COG0159 98 VL-MTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYY 176 (265)
T ss_pred EE-EEECCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEE
T ss_conf 99-87011887735999999999759987985789866777899999976986798869999989999999747985899
Q ss_pred EEEEC--CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCH---HHHHHH
Q ss_conf 98306--776533220135778998654313865269815899-889999996799899974266378998---999999
Q gi|254780975|r 139 MTVNP--GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGE---ISYAKR 212 (224)
Q Consensus 139 M~V~P--G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~---~~~~~~ 212 (224)
.++.+ |-..+.. ..+-+.++.+|++. +..+.|-=||+ .+++..+.++ ||-+|+||++.+.-.. .+..+.
T Consensus 177 vs~~GvTG~~~~~~-~~~~~~v~~vr~~~---~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~~i~~~~~~~~~~~ 251 (265)
T COG0159 177 VSRMGVTGARNPVS-ADVKELVKRVRKYT---DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVKIIEEGLDEEALEE 251 (265)
T ss_pred EECCCCCCCCCCCC-HHHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHH-CCEEEECHHHHHHHHHCCCHHHHHH
T ss_conf 96666667776530-46999999999744---8973874486999999999976-8857973999999995551446999
Q ss_pred HHHHHHHH
Q ss_conf 99999978
Q gi|254780975|r 213 LNDLKKSA 220 (224)
Q Consensus 213 l~~l~~~a 220 (224)
+..+.+.-
T Consensus 252 ~~~l~~~l 259 (265)
T COG0159 252 LRALVKEL 259 (265)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 69
>PRK05211 consensus
Probab=98.55 E-value=2.7e-05 Score=54.13 Aligned_cols=187 Identities=18% Similarity=0.144 Sum_probs=127.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEEC
Q ss_conf 58899999999999659989999734263458434178999986412564168567885120336764047760799970
Q gi|254780975|r 14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHP 93 (224)
Q Consensus 14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~ 93 (224)
.|+.+ ..+...+.|+|+||+==.|+.+- +-....++++++.+.+..|+.+===+.+ ..-++.+.++|+|.|++-.
T Consensus 21 gDP~~---~ak~~~~~gadelhivDld~a~~-g~~~n~~~I~~i~~~~~~Pl~vGGGIrs-~~~i~~ll~~GadkViigs 95 (248)
T PRK05211 21 GDIVP---LAKRYAEEGADELVFYDITASSD-GRVVDKSWVSRVAEVIDIPFCVAGGIKS-VEDAREILSFGADKISINS 95 (248)
T ss_pred CCHHH---HHHHHHHCCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHCCCCEEEECC
T ss_conf 89999---99999986999899997867767-8721499999999767985896278013-8999999987998899897
Q ss_pred CCCCCHHHHHHHHHHCCCE-EEEEEEC----------------------CCC---HHHHHHHHHH-CCEEEEEEEECCCC
Q ss_conf 6642158999867764982-5998523----------------------334---4789988620-14028998306776
Q gi|254780975|r 94 ESSPHIRRSLRTIHAMGKK-TGVAINP----------------------ETP---VAILEDVIDE-IDMILIMTVNPGFG 146 (224)
Q Consensus 94 E~~~~~~~~i~~i~~~g~k-~Giai~p----------------------~T~---~~~i~~~l~~-~D~vliM~V~PG~~ 146 (224)
.+.++|+-+-+.++..|.+ +-+++.. .|. +++++.+.+. +-.+++=+|+---.
T Consensus 96 ~a~~np~li~~~~~~fG~q~IvvsiD~~~~~~~~~~~v~~~~g~~~~~~~t~~~~~d~i~~~~~~G~geIl~t~IdrDG~ 175 (248)
T PRK05211 96 PALADPTLITRLADRFGVQCIVVGIDSWFDAETGKYQVYQYTGDESRTKATQWETLDWVKEVQKRGAGEIVLNMMNQDGV 175 (248)
T ss_pred HHHHCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 67619618999998579936999997102555785799982586565304773699999999975986699989878997
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHH-HHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 53322013577899865431386526981589-9889999-99679989997426637899899999
Q gi|254780975|r 147 GQQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKS-LVQAGADLLVVGSSFFNQKGEISYAK 211 (224)
Q Consensus 147 Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~-l~~~Gad~~V~Gsaif~~~d~~~~~~ 211 (224)
.+.++-+.++++.+ ..++++-+=||+ +.+.+.+ +.+.|++-+++||+++...-....++
T Consensus 176 ~~G~dl~l~~~i~~------~~~iPvIasGGv~s~~di~~~~~~~~~~gvi~gs~~~~~~i~l~e~k 236 (248)
T PRK05211 176 RNGYDLAQLKKVRA------ICHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIINIGELK 236 (248)
T ss_pred CCCCCHHHHHHHHH------HCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHH
T ss_conf 27889999999997------46999999888899999999998679841330488888999999999
No 70
>PRK00830 consensus
Probab=98.54 E-value=5.2e-05 Score=52.33 Aligned_cols=188 Identities=19% Similarity=0.099 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCC
Q ss_conf 99999999999659989999734263458434178999986412564168567885120336764047760799970664
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESS 96 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~ 96 (224)
.+-.+..+...+.|+|+||+==.||.+-. -.-..+.++++.+.+..|+.+===+.+ ...++.+.++|+|.|++-..+.
T Consensus 34 gdP~~~ak~~~~~gadelhivDld~a~~g-~~~~~~~I~~i~~~~~~pi~vGGGIrs-~e~~~~ll~~GadkVvIgS~a~ 111 (273)
T PRK00830 34 GDPVELAKRYYEDGADELVFLDITASHEG-RATMIDVIERTAEEVFIPLTVGGGIRS-IEDIRQILRAGADKVSVNTAAV 111 (273)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEEECCCCC-CCCHHHHHHHHHHHCCCCEEEECCEEE-CCCHHHHHHCCCCEEECHHHHH
T ss_conf 89999999999879998999953246468-842799999999866995896088437-7328999976986398379898
Q ss_pred CCHHHHHHHHHHCCCE-EEEEEEC----------------------------------CCC---HHHHHHHHHH-CCEEE
Q ss_conf 2158999867764982-5998523----------------------------------334---4789988620-14028
Q gi|254780975|r 97 PHIRRSLRTIHAMGKK-TGVAINP----------------------------------ETP---VAILEDVIDE-IDMIL 137 (224)
Q Consensus 97 ~~~~~~i~~i~~~g~k-~Giai~p----------------------------------~T~---~~~i~~~l~~-~D~vl 137 (224)
++|+-+-+.++..|.+ +-+++.. .|. ++.+..+-+. +-.++
T Consensus 112 ~np~~v~~~~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~g~~~w~~v~~~g~~~~t~~~~~~~~~~~~~~G~geil 191 (273)
T PRK00830 112 KNPEFIREASDIFGSQCIVVAIDCKRNYNPKDNPDKTIVELEDGTCAWYEVVIYGGREFTGIDAVQWAKKVEELGAGEIL 191 (273)
T ss_pred HCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 59077899998769905999998433766545676214540478742289997078033786799999999864988688
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHH-HCCCCEEEECHHHH-CCCCHHHHHHH
Q ss_conf 998306776533220135778998654313865269815899-88999999-67998999742663-78998999999
Q gi|254780975|r 138 IMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLV-QAGADLLVVGSSFF-NQKGEISYAKR 212 (224)
Q Consensus 138 iM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~-~~Gad~~V~Gsaif-~~~d~~~~~~~ 212 (224)
+=+|+---..+.++-+.++++.+ ..++++.+=||++ .+.+.++. ..+++.+++||++. +.-.+.+..+.
T Consensus 192 ~tdI~rDGt~~G~d~~l~~~i~~------~~~iPvIasGGv~~~~di~~~~~~~~~~~v~~gs~f~~~~~si~e~k~~ 263 (273)
T PRK00830 192 LTSMDRDGTKDGYDIPITKKISE------EVDIPVIASGGVGNPEHIYEGFSDGKADAALAASIFHFNEYSIREVKEY 263 (273)
T ss_pred EEEECCCCCCCCCCHHHHHHHHH------CCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHCCCCCHHHHHHH
T ss_conf 87875779656889699999986------3799889988999999999999838986887700566699799999999
No 71
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.53 E-value=1.7e-05 Score=55.49 Aligned_cols=180 Identities=16% Similarity=0.099 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 99999999996599899997342634584341789999864125641685678851203367640477607999706642
Q gi|254780975|r 18 RLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSP 97 (224)
Q Consensus 18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~ 97 (224)
+-.+..+...+.|+|++|+==.|+.+ .+-....+.+++|.+.+..|+.+===+.+ ...++++..+|+|.|++..-+..
T Consensus 31 dP~~~ak~f~~~GadelhivDld~a~-~g~~~n~~~I~~I~~~~~ipi~vGGGIrs-~e~~~~ll~~GadkViigs~a~~ 108 (253)
T PRK01033 31 DPINAVRIFNEKEADELIVLDIDASR-KGREPNYELIENLASECFMPLCYGGGIKT-VEQAKRIFSLGVEKVSISTAALE 108 (253)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCC-CCCCCHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHCCCCEEEECCHHHH
T ss_conf 99999999998799989999474542-48801699999999876998898688121-68889998679866999987863
Q ss_pred CHHHHHHHHHHCCCE-EEEEEEC--------------C---CC---HHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHH
Q ss_conf 158999867764982-5998523--------------3---34---4789988620-14028998306776533220135
Q gi|254780975|r 98 HIRRSLRTIHAMGKK-TGVAINP--------------E---TP---VAILEDVIDE-IDMILIMTVNPGFGGQQLIESTI 155 (224)
Q Consensus 98 ~~~~~i~~i~~~g~k-~Giai~p--------------~---T~---~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l 155 (224)
+++-+-+.++..|.+ +-+++.. . |. .+.+..+.+. +..+++=.|+---..+.++-+.+
T Consensus 109 ~p~~i~~~~~~fG~q~IvvsiD~k~~~~~~~~v~~~g~~~~t~~~~~~~~~~~~~~g~geil~TdI~rDGt~~G~d~~l~ 188 (253)
T PRK01033 109 DPKLITEAAEIYGSQSVVVSIDVKKRLFGRYDVYTHNGTKKTGLDPVEFAKQAEELGAGEIVLNSIDRDGVMKGYDLELI 188 (253)
T ss_pred CCHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHH
T ss_conf 74165789987799769999998248778347898679536785589999998746977999987848897668799999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCC-HHHHHHH-HHCCCCEEEECHH-HHCCCC
Q ss_conf 778998654313865269815899-8899999-9679989997426-637899
Q gi|254780975|r 156 PKIRQAKALIGKRSISLEVDGGVT-SRNIKSL-VQAGADLLVVGSS-FFNQKG 205 (224)
Q Consensus 156 ~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l-~~~Gad~~V~Gsa-if~~~d 205 (224)
+++++ ..++++.+-||++ .+.+.++ ...|++-+..||. .|+.+.
T Consensus 189 ~~i~~------~~~ipiIasGGi~s~~di~~l~~~~~v~gv~~gs~F~f~g~~ 235 (253)
T PRK01033 189 KKISS------AVKIPVTALGGAGSLDDIADLIQEAGASAAAAGSLFVFKGPH 235 (253)
T ss_pred HHHHH------HCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEEEEECCCC
T ss_conf 99998------789999997898999999999986797399783168984798
No 72
>PRK13138 consensus
Probab=98.52 E-value=8.6e-05 Score=50.93 Aligned_cols=188 Identities=11% Similarity=0.176 Sum_probs=130.9
Q ss_pred ECHHHHCCC--HHHHHHHHHHHHHCCCCEEEEEE------ECCEECC---------CCCC--CHHHHHHHHH-CCCCEEE
Q ss_conf 817063258--89999999999965998999973------4263458---------4341--7899998641-2564168
Q gi|254780975|r 7 IVPSILAAD--FSRLGEEISNITKAGAKQIHFDV------MDGCFVP---------NISF--GADVIRSLRS-YSDSVFD 66 (224)
Q Consensus 7 IspSil~~d--~~~l~~~i~~l~~~~~d~iHiDI------mDg~fvp---------n~~~--~~~~i~~i~~-~t~~~~d 66 (224)
+.|=+.+.+ +-...+.++.+.++|+|.+-+-+ +||--.. .+++ -+++++++|+ .++.|+=
T Consensus 15 lI~yitaG~P~~e~t~~~~~~l~~~GadiiEiGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~piv 94 (264)
T PRK13138 15 FIPYISLGDPDYDSCIIWADALIRGGAGILELGIPFSDPVADGPVIQKAFKRALAHPFSMDKILEITAEIHKLHPEIPLV 94 (264)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEE
T ss_conf 78886787999899999999999779998997998888666589999999999977990889744677603358988889
Q ss_pred EEEEEE-E------CCHHHHHHCCCCCCEEEEE---CCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-E
Q ss_conf 567885-1------2033676404776079997---066421589998677649825998523334478998862014-0
Q gi|254780975|r 67 CHLMIS-S------IDSHINIIADAGCDIITFH---PESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-M 135 (224)
Q Consensus 67 vHLMv~-~------P~~~i~~~~~~g~d~i~~H---~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~ 135 (224)
+ |.= | .++|++.+.++|+|=+.++ +|. ++..+....++++|...-.-+.|.|+-+.+..+....+ +
T Consensus 95 l--M~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~e~-~E~~~~~~~~~~~~i~~I~liaPtt~~~Ri~~i~~~s~gF 171 (264)
T PRK13138 95 Y--LTYFNPLFSMGLEAFTERAKNSGIQGLIIPDLPFDT-PEAEEFFSQLERKKIDFIHLVTPATTEDRIQSMKSFASGF 171 (264)
T ss_pred E--EEEHHHHHHHCHHHHHHHHHHCCCCEEECCCCCCCC-HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCE
T ss_conf 7--521238988489999999987697758536898650-3359999999986998675217999899999999738880
Q ss_pred EEEEEEE--CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 2899830--67765332201357789986543138652698158998899999967998999742663
Q gi|254780975|r 136 ILIMTVN--PGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFF 201 (224)
Q Consensus 136 vliM~V~--PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif 201 (224)
|-++++. -|.. +.+....-+.++++|+. .+.++.|-=||+...-......+||-+|+||++.
T Consensus 172 iY~Vs~~GvTG~~-~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~~~~~~~~ADGvIVGSaiv 235 (264)
T PRK13138 172 IYYVTSYGVTGER-GAIASGLEDRIQMVRKI---VGLPVCAGFGISTADQAKEISTYADGVIIGSAVQ 235 (264)
T ss_pred EEEEECCCCCCCC-CCCCHHHHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHHCCCEEEECHHHH
T ss_conf 8987545667876-55537699999999974---3898388606798999999983499999819999
No 73
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.51 E-value=9.6e-06 Score=57.01 Aligned_cols=145 Identities=19% Similarity=0.310 Sum_probs=107.8
Q ss_pred HHHHHHHHCCCCEEEEEEEEEEC----CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHH
Q ss_conf 99998641256416856788512----03367640477607999706642158999867764982599852333447899
Q gi|254780975|r 52 DVIRSLRSYSDSVFDCHLMISSI----DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILE 127 (224)
Q Consensus 52 ~~i~~i~~~t~~~~dvHLMv~~P----~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~ 127 (224)
+.++++|+.++.|+-+.|++..+ +.+++.+.+.|++.|+++.. .+.+.++++|+.|.++... -++.+..+
T Consensus 43 ~~i~~~~~~~~~pfgvnl~~~~~~~~~~~~~~~~~~~~v~~v~~~~g---~p~~~v~~l~~~g~~v~~~---v~s~~~A~ 116 (236)
T cd04730 43 AEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG---PPAEVVERLKAAGIKVIPT---VTSVEEAR 116 (236)
T ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCC---CCHHHHHHHHHCCCEEEEE---CCCHHHHH
T ss_conf 99999997469972443324677636899999999769999998798---9789999999829989995---89899999
Q ss_pred HHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 8862-0140289983067765332201357789986543138652698158998-8999999679989997426637899
Q gi|254780975|r 128 DVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 128 ~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
...+ -+|.|.+-+.+.|--...+...++..+.++++.. ++.+.++|||.. +.+......|||-+..||...-.++
T Consensus 117 ~a~~~GaD~iv~qG~eAGGH~g~~~~~~~~lv~~v~~~~---~ipviaAGGI~~g~~i~aal~lGA~gV~~GTrfl~t~E 193 (236)
T cd04730 117 KAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV---DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEE 193 (236)
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH---CCCEEEECCCCCHHHHHHHHHHCCCEEEECCHHHHCCC
T ss_conf 999818998999777777788987555677999999982---98689654627789999999808979995538570845
No 74
>PRK13115 consensus
Probab=98.49 E-value=4.8e-05 Score=52.58 Aligned_cols=206 Identities=14% Similarity=0.183 Sum_probs=137.9
Q ss_pred EECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEE
Q ss_conf 881706325--889999999999965998999973------426345---------84341--78999986412564168
Q gi|254780975|r 6 QIVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFD 66 (224)
Q Consensus 6 ~IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~d 66 (224)
-+.|=+.+. |+....+.+..+.++|+|.+-+-| .||--. .++++ -++.++.+++ ++.|+=
T Consensus 25 alI~yitaG~P~~e~t~~~i~~l~~~GaDiiElGiPFSDP~ADGPvIQ~A~~rAL~~G~~~~~~f~~v~~~~~-~~~Piv 103 (269)
T PRK13115 25 ALIGYLPAGFPDVDTSIAAMTALVESGCDIVEVGLPYSDPVMDGPVIQAATEAALRGGVRVRDVFRAVEAISA-AGGRAL 103 (269)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCCCEE
T ss_conf 4887852738998999999999996699999979998885666899999999999779959999999998415-799888
Q ss_pred EEEEE-EEC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEE
Q ss_conf 56788-512------033676404776079997066421589998677649825998523334478998862014-0289
Q gi|254780975|r 67 CHLMI-SSI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILI 138 (224)
Q Consensus 67 vHLMv-~~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vli 138 (224)
||. -|| ++|++.+.++|+|=+++.==-.++-....+.++++|...-.-+.|.|+-+.+..+..... +|-+
T Consensus 104 --lM~Y~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gi~~I~LvaPtt~~eRi~~i~~~a~GFIY~ 181 (269)
T PRK13115 104 --VMTYWNPVLRYGVDRFARDLAAAGGAGLITPDLIPDEAGEWLAASERHGLDRIFLVAPSSTPERLAETVEASRGFVYA 181 (269)
T ss_pred --EHHHHHHHHHHCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHCCCCCEEE
T ss_conf --547548998736999999999739980764789978999999999865812899858999889999998448880899
Q ss_pred EEEECCCCC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHC---CCCHHHHHHH
Q ss_conf 983067765--3322013577899865431386526981589-988999999679989997426637---8998999999
Q gi|254780975|r 139 MTVNPGFGG--QQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFN---QKGEISYAKR 212 (224)
Q Consensus 139 M~V~PG~~G--q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~---~~d~~~~~~~ 212 (224)
.++ .|-.| ..+.+...+.++++|+. .+.++.|-=|| +.+.+..+.+ .||.+|+||++.+ ..+..+..+-
T Consensus 182 Vs~-~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~~~~~~~-~aDGvIVGSa~V~~i~~~g~~~v~~~ 256 (269)
T PRK13115 182 AST-MGVTGARDAVSSAAPELVARVRAA---SDIPVCVGLGVSSAAQAAEIAG-YADGVIVGSALVSALLDGGLPAVRAL 256 (269)
T ss_pred EEC-CCCCCCCCCCCHHHHHHHHHHHHH---CCCCCEEECCCCCHHHHHHHHH-HCCEEEECHHHHHHHHHCCHHHHHHH
T ss_conf 754-545677644417799999999971---7998179727899999999980-29999986899999997597999999
Q ss_pred HHHHHHH
Q ss_conf 9999997
Q gi|254780975|r 213 LNDLKKS 219 (224)
Q Consensus 213 l~~l~~~ 219 (224)
+++|+..
T Consensus 257 ~~el~~~ 263 (269)
T PRK13115 257 TEELAAG 263 (269)
T ss_pred HHHHHHH
T ss_conf 9999999
No 75
>PRK13133 consensus
Probab=98.49 E-value=5.4e-05 Score=52.21 Aligned_cols=206 Identities=15% Similarity=0.146 Sum_probs=136.1
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHH-----CCC
Q ss_conf 81706325--889999999999965998999973------426345---------84341--7899998641-----256
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRS-----YSD 62 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~-----~t~ 62 (224)
+.|=+.+. |.....+.++.+.++|+|.+-+-| .||--. ..+++ -+++++++|+ .++
T Consensus 17 li~yitaG~P~~~~t~~~i~~l~~~GaDiiElGiPFSDP~ADGpvIQ~A~~rAL~~G~~~~~~~~~~~~~r~~~~~~~~~ 96 (267)
T PRK13133 17 LIAYYMPEFPVAGATLPVLEALQESGADIIELGIPYSDPIGDGPVIQNAAHTAIRNGVSVRSLLELVRKARNGEGCRKIT 96 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 78785686999899999999999759998997899888666689999999999986998999999999997302434668
Q ss_pred CEEEEEEEEE-E------CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-
Q ss_conf 4168567885-1------2033676404776079997066421589998677649825998523334478998862014-
Q gi|254780975|r 63 SVFDCHLMIS-S------IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID- 134 (224)
Q Consensus 63 ~~~dvHLMv~-~------P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D- 134 (224)
.|+-+ |.= | .++|++.+.++|+|-++++==-.+.-......++++|...-.-+.|.|+-+.+..+....+
T Consensus 97 ~Pivl--MtY~N~i~~yG~e~F~~~~~~aGvdGlIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~eRi~~i~~~s~G 174 (267)
T PRK13133 97 VPILL--MGYCNPLIAYGGDCFLADAVKAGVDGLLIPDLPPEEAIDFLERAKNFGLTVVFLISPVTPPERIEFIDSLSTD 174 (267)
T ss_pred CCEEE--HHHHHHHHHHCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 77871--5645799984779999999986987887789996888999999984698602442899999999999842789
Q ss_pred EEEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHH----CC
Q ss_conf 02899830677653------3220135778998654313865269815899-8899999967998999742663----78
Q gi|254780975|r 135 MILIMTVNPGFGGQ------QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFF----NQ 203 (224)
Q Consensus 135 ~vliM~V~PG~~Gq------~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif----~~ 203 (224)
+|-++++ .|-.|. .+....-+.++.+|+. .+.++.|-=||+ .+.+..+.+. ||.+|+||++. ++
T Consensus 175 FiY~vs~-~GvTG~~~~~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~~~~i~~~-ADGvIVGSaiV~~i~~~ 249 (267)
T PRK13133 175 FSYCLAV-NATTGTAKLSDAGTEAAVDEYLKRVRQH---TKKKFVVGFGIKDRERVEHMWEL-ADGAVVGTALLQHIAGA 249 (267)
T ss_pred CEEEEEE-ECCCCCCCCCCCCHHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHHHHH-CCEEEECHHHHHHHHHC
T ss_conf 5799980-0134677555542678999999999971---89987996687999999999822-99999878999999837
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 9989999999999997
Q gi|254780975|r 204 KGEISYAKRLNDLKKS 219 (224)
Q Consensus 204 ~d~~~~~~~l~~l~~~ 219 (224)
.++.+..+...++.++
T Consensus 250 ~~~~e~~~~~~~f~~~ 265 (267)
T PRK13133 250 GTPQETARLAGEFWQS 265 (267)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 9968999999999986
No 76
>PRK13123 consensus
Probab=98.49 E-value=7.1e-05 Score=51.46 Aligned_cols=206 Identities=17% Similarity=0.279 Sum_probs=137.4
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCCCHHHHHHHHH-CCCCEEEEE
Q ss_conf 81706325--889999999999965998999973------426345---------843417899998641-256416856
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISFGADVIRSLRS-YSDSVFDCH 68 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~~~~~i~~i~~-~t~~~~dvH 68 (224)
+.|=+.+. |.-...+.++.+.++|+|.+-+-| +||--. .++++. ..++.+++ .++.|+ =
T Consensus 17 li~yitaG~P~~~~~~~~i~~l~~~GaDiiElGiPFSDPvADGPvIq~A~~rAL~~G~~~~-~~~~~~~~~~~~~Pi--v 93 (256)
T PRK13123 17 FVPYIMAGDGGLDGLKETIRFLEEAGVSAIEIGIPFSDPVADGPVIQLAGLRALASGVSLK-AILQALIEKETQIPL--V 93 (256)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHH-HHHHHHHHCCCCCCE--E
T ss_conf 8888618689978999999999976999999789988866657999998999986799699-999887630579988--9
Q ss_pred EEEE-EC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEE
Q ss_conf 7885-12------033676404776079997066421589998677649825998523334478998862014-028998
Q gi|254780975|r 69 LMIS-SI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMT 140 (224)
Q Consensus 69 LMv~-~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~ 140 (224)
||.= || ++|++.+.++|+|=+.++=--.+.-......++++|...-.-+.|.|+.+.+..+....+ +|-+.+
T Consensus 94 lMtY~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gi~~I~liaPtt~~~Ri~~i~~~a~GFiY~Vs 173 (256)
T PRK13123 94 IMTYINPVFQYGIERFVEDLAETGVKGLIIPDLPYEHQDFIAPLLRDTDIALIPLVSLTSPIERQKEIIKEAEGFIYAVA 173 (256)
T ss_pred EEEHHHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 74042589871899999999974997897379996789999999997699778640899938899999860788489974
Q ss_pred EECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHC---CCCHHHHHHHHH
Q ss_conf 30677653--3220135778998654313865269815899-88999999679989997426637---899899999999
Q gi|254780975|r 141 VNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFN---QKGEISYAKRLN 214 (224)
Q Consensus 141 V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~---~~d~~~~~~~l~ 214 (224)
+. |-.|. .+.+..-+.++++|+. .+.++.|-=||+ .+.++.+.+ .+|-+|+||++.+ .....+..+-++
T Consensus 174 ~~-GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~~~-~aDGvIVGSaiv~~i~~~~~~ei~~fi~ 248 (256)
T PRK13123 174 VN-GVTGKRGNYRDDLDSHLEKLKSI---AHIPVLAGFGISTLEDVERFNA-VCDGVIVGSKIVELLHEGKEEEICEFIQ 248 (256)
T ss_pred CC-CCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHHHH-HCCEEEEHHHHHHHHHHCCHHHHHHHHH
T ss_conf 45-56676533338899999999856---8998799768899999999971-3999997299999999779899999999
Q ss_pred HHHHHH
Q ss_conf 999978
Q gi|254780975|r 215 DLKKSA 220 (224)
Q Consensus 215 ~l~~~a 220 (224)
+|++..
T Consensus 249 ~~k~~~ 254 (256)
T PRK13123 249 AAKQKE 254 (256)
T ss_pred HHHHHH
T ss_conf 999874
No 77
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.47 E-value=0.00016 Score=49.24 Aligned_cols=180 Identities=16% Similarity=0.187 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEEC
Q ss_conf 58899999999999659989999734263458434178999986412564168567885120336764047760799970
Q gi|254780975|r 14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHP 93 (224)
Q Consensus 14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~ 93 (224)
-|+... .+...+.|+.|+|+==.||-|.+ -.-..+.+++|.+.++.|+.+-== -+-.+.++.+.++|++++++-.
T Consensus 31 ~~P~~~---a~~~~~~Ga~~lHlVDLdgA~~g-~~~n~~~i~~i~~~~~~~vQvGGG-IRs~~~v~~ll~~G~~rViiGt 105 (241)
T COG0106 31 DDPLEV---AKKWSDQGAEWLHLVDLDGAKAG-GPRNLEAIKEILEATDVPVQVGGG-IRSLEDVEALLDAGVARVIIGT 105 (241)
T ss_pred CCHHHH---HHHHHHCCCCEEEEEECCCCCCC-CCCCHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHHHCCCCEEEEEC
T ss_conf 998999---99999809958988626632158-755499999999857997784087-6789999999987998899803
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEEEECC---------------CCHHHHHHHHHH-CCEEEEEEEE-CCCCCCCCCCHHHH
Q ss_conf 664215899986776498259985233---------------344789988620-1402899830-67765332201357
Q gi|254780975|r 94 ESSPHIRRSLRTIHAMGKKTGVAINPE---------------TPVAILEDVIDE-IDMILIMTVN-PGFGGQQLIESTIP 156 (224)
Q Consensus 94 E~~~~~~~~i~~i~~~g~k~Giai~p~---------------T~~~~i~~~l~~-~D~vliM~V~-PG~~Gq~f~~~~l~ 156 (224)
-+..+|+.+.+++++.|-++-++|... ++.+..+.|.+. +..+++--+. -|-- +..+...+
T Consensus 106 ~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl-~G~n~~l~- 183 (241)
T COG0106 106 AAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTL-SGPNVDLV- 183 (241)
T ss_pred CEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCC-CCCCHHHH-
T ss_conf 1216999999999985982899997148853204610125678999999998578776999851446645-77787999-
Q ss_pred HHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHC-CCCEEEECHHHHCCCC
Q ss_conf 78998654313865269815899-8899999967-9989997426637899
Q gi|254780975|r 157 KIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQA-GADLLVVGSSFFNQKG 205 (224)
Q Consensus 157 kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~-Gad~~V~Gsaif~~~d 205 (224)
+++.+. .++++..-|||+ .+.+..+.+. |+.-+++|+|++...-
T Consensus 184 --~~l~~~---~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~ 229 (241)
T COG0106 184 --KELAEA---VDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKF 229 (241)
T ss_pred --HHHHHH---HCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEHHHHCCCC
T ss_conf --999998---2767898668687999999985579728998668964897
No 78
>PRK13120 consensus
Probab=98.44 E-value=5.3e-05 Score=52.28 Aligned_cols=189 Identities=17% Similarity=0.231 Sum_probs=129.8
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHH-CCCCEEE
Q ss_conf 81706325--889999999999965998999973------426345---------84341--7899998641-2564168
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRS-YSDSVFD 66 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~-~t~~~~d 66 (224)
+.|=|.+. |+..-.+.++.+.++|+|.+-+-| .||--. ..+++ -+++++.+|+ ....|+=
T Consensus 23 lI~yitaG~P~~~~t~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~l~~vl~~v~~~r~~~~~~Piv 102 (285)
T PRK13120 23 LIPYIAAGDPSPQATVPLMHALVRAGADLVELGVPFSDPMADGPVVQRAAERAIAQGVGLRRVLELVADFRRDDSVTPVV 102 (285)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 88785785899899999999999769999997898787456689999999999976998446999999987348988889
Q ss_pred EEEEE-EEC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEE
Q ss_conf 56788-512------033676404776079997066421589998677649825998523334478998862014-0289
Q gi|254780975|r 67 CHLMI-SSI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILI 138 (224)
Q Consensus 67 vHLMv-~~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vli 138 (224)
||. -|| ++|++.+.++|+|=+++.==-.+.-.+..+.++++|...-.-+.|.|+-+.++.+..... +|-+
T Consensus 103 --lM~Y~Npi~~yG~e~F~~~~~~aGvdGlIIpDLP~EE~~~~~~~~~~~gi~~I~LiaPtT~~eRi~~I~~~s~GFvY~ 180 (285)
T PRK13120 103 --LMGYANPIERMGQRAFAQAAQAAGVDGVLVVDYPPEEVDEFAAMLAEAGVAPIFLLAPTSTEARIEAIGRVARGYVYY 180 (285)
T ss_pred --EEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEE
T ss_conf --861054999987999999999839877964799979999999999966996589957999899999999508981899
Q ss_pred EEEECCCC--CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHC
Q ss_conf 98306776--5332201357789986543138652698158998-8999999679989997426637
Q gi|254780975|r 139 MTVNPGFG--GQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 139 M~V~PG~~--Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
.++ .|-. .+.+.+...+.++++|+. .++++.|-=||+. +.++.+ ...+|.+|+||+|.+
T Consensus 181 VS~-~GVTG~~~~~~~~l~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~-~~~ADGvIVGSAiVk 242 (285)
T PRK13120 181 VSL-KGVTGAGSLDTDDVARKLALIRRH---VHIPVGVGFGIRDAASAQRI-AAHADAVVIGSKLIE 242 (285)
T ss_pred EEC-CCCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEECCCCHHHHHHH-HCCCCEEEECHHHHH
T ss_conf 865-654688755668899999999972---69975999625989999999-702999998789999
No 79
>PRK13126 consensus
Probab=98.41 E-value=2.2e-05 Score=54.75 Aligned_cols=206 Identities=14% Similarity=0.123 Sum_probs=126.5
Q ss_pred ECHHHHCCC--HHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHH----HHHHHH-CCCCEEEEEEEEE-EC----
Q ss_conf 817063258--89999999999965998999973426345843417899----998641-2564168567885-12----
Q gi|254780975|r 7 IVPSILAAD--FSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADV----IRSLRS-YSDSVFDCHLMIS-SI---- 74 (224)
Q Consensus 7 IspSil~~d--~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~----i~~i~~-~t~~~~dvHLMv~-~P---- 74 (224)
+.|=+.+.+ .-...+.++.+ +.|+|.+-+-|= |..-+.=||-+ .+.+++ ++....-+=||.= ||
T Consensus 8 li~yitaG~P~~~~t~~~l~~l-~~gaDiiElGiP---FSDP~ADGPvIQ~A~~~Al~~G~~~~~~pivlM~Y~N~~~~g 83 (237)
T PRK13126 8 LGVYLTAGWPSADTFLEALAGL-SGLVDFFELGIP---TPNPKYDGPYIRLAHREAEEPGWDAPKAPTYLMAYWEDYAGS 83 (237)
T ss_pred EEEEEECCCCCHHHHHHHHHHH-HCCCCEEEECCC---CCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHH
T ss_conf 6888717179879999999985-548999998998---888777689999999999985998568758999729877656
Q ss_pred -CHHHHHHCCCCCCEEEEE---CCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCC
Q ss_conf -033676404776079997---0664215899986776498259985233344789988620140289983067765332
Q gi|254780975|r 75 -DSHINIIADAGCDIITFH---PESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQL 150 (224)
Q Consensus 75 -~~~i~~~~~~g~d~i~~H---~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f 150 (224)
++++.++.++|+|=+.+. +|..+........++++|...-.-+.|.|+-+.++.+........-+++... .|...
T Consensus 84 ~~~f~~~~~~aGvdGlIipDLP~e~~ee~~~~~~~~~~~gl~~I~lv~ptt~~~ri~~i~~~s~gfiYvs~~gv-TG~~~ 162 (237)
T PRK13126 84 PAELFETAAEVGARGVLAPDLLIDFPGDLERYLELSREYGLAPSFFIPSKFPHRLLRRLASLEPDFIYLGLYAA-TGIEL 162 (237)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECC-CCCCC
T ss_conf 99999999874997388368887781778999999997699779973899839999999985898799986526-67641
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCC--CHHHHHHHHHHHHHH
Q ss_conf 20135778998654313865269815899-8899999967998999742663789--989999999999997
Q gi|254780975|r 151 IESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQK--GEISYAKRLNDLKKS 219 (224)
Q Consensus 151 ~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~--d~~~~~~~l~~l~~~ 219 (224)
.......++.+|+.. .+..+.|-=||+ .+.+.++.+.|+|-+|+||++.+.- +..+..+-+++||+.
T Consensus 163 ~~~~~~~i~~ir~~~--~~~Pv~vGFGI~t~e~~~~~~~~~aDGvIVGSaiV~~i~~~~~~~~~~v~~lr~a 232 (237)
T PRK13126 163 PVYVERNVKTIRGLA--GDVYLVAGFAIDSPEKAARLVKAGADGVVVGTAFMRRLSSSVEEALSFLKEIRGA 232 (237)
T ss_pred HHHHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 567999999999857--8997799945399999999986489999987899999997559999999999999
No 80
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=98.41 E-value=0.00014 Score=49.54 Aligned_cols=188 Identities=18% Similarity=0.203 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCC--CCCHHHHHHHHHCCCCE-EEEEEEEEECCHHHHH-HCCCCCCEEEEE
Q ss_conf 9999999999965998999973426345843--41789999864125641-6856788512033676-404776079997
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNI--SFGADVIRSLRSYSDSV-FDCHLMISSIDSHINI-IADAGCDIITFH 92 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~--~~~~~~i~~i~~~t~~~-~dvHLMv~~P~~~i~~-~~~~g~d~i~~H 92 (224)
.++ ++++.+.++|+||+=+= |.|+- ..+++..+.|.+...-. --|=+.++.....+.. +.+.+.|+|=+|
T Consensus 11 t~~-eda~~~~~~gad~iGfi-----f~~~SpR~v~~~~a~~i~~~~~~~~~~VgVfv~~~~~~i~~~~~~~~~d~vQlH 84 (212)
T PRK01222 11 TTP-EDALAAAEAGADAIGFV-----FYPKSPRYVTPEQAAELAAALPPFVKVVGVFVNASDEEIAEIVEAVGLDLLQLH 84 (212)
T ss_pred CCH-HHHHHHHHCCCCEEEEE-----ECCCCCCEECHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEC
T ss_conf 959-99999995799989888-----038999462799999998627899737999945817999999985699889985
Q ss_pred CCCCCCHHHHHHHHHH-CCCEEEEEEE--CCCCHHHHHHHHHHCCEEEEEEEE--CCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 0664215899986776-4982599852--333447899886201402899830--6776533220135778998654313
Q gi|254780975|r 93 PESSPHIRRSLRTIHA-MGKKTGVAIN--PETPVAILEDVIDEIDMILIMTVN--PGFGGQQLIESTIPKIRQAKALIGK 167 (224)
Q Consensus 93 ~E~~~~~~~~i~~i~~-~g~k~Giai~--p~T~~~~i~~~l~~~D~vliM~V~--PG~~Gq~f~~~~l~kI~~l~~~~~~ 167 (224)
-+.+ ++ .++.+++ .+.++--|++ ....++.+..|.+.+|++|+=+-. +|-+|+.|.-+.+.+++
T Consensus 85 G~e~--~~-~~~~l~~~~~~~iikai~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~fdw~~l~~~~-------- 153 (212)
T PRK01222 85 GDET--PE-FCRQLKRRYGLPVIKALRVRPAADLEAAAAYYPVADGLLLDAYVPLPGGTGKTFDWSLLAGFP-------- 153 (212)
T ss_pred CCCC--HH-HHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHCC--------
T ss_conf 7437--89-999999753970899984187788999998746687898638987678777643879986143--------
Q ss_pred CCCEEEEECCCCHHHHHHHHH-CCCCEEEECHHHH---CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 865269815899889999996-7998999742663---789989999999999997862
Q gi|254780975|r 168 RSISLEVDGGVTSRNIKSLVQ-AGADLLVVGSSFF---NQKGEISYAKRLNDLKKSALA 222 (224)
Q Consensus 168 ~~~~I~vDGGvn~~~i~~l~~-~Gad~~V~Gsaif---~~~d~~~~~~~l~~l~~~a~a 222 (224)
...++.+-||+|.+|+.++.+ .++..+=+.|.+= +.+|... ++.+-+-.+.|.|
T Consensus 154 ~~~~~~LAGGl~~~Nv~~ai~~~~p~gvDvsSGVE~~pG~KD~~k-i~~fi~~vr~a~~ 211 (212)
T PRK01222 154 AGLPWMLAGGLNPDNVAEAIRQVRPYGVDVSSGVESAPGIKDPEK-IRAFIEAVKRADA 211 (212)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCEEEECCCEECCCCCCCHHH-HHHHHHHHHHHCC
T ss_conf 578789966788789999999859999996381067899769999-9999999974525
No 81
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.40 E-value=3.5e-05 Score=53.45 Aligned_cols=181 Identities=12% Similarity=0.131 Sum_probs=132.3
Q ss_pred HHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHC--CCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCH
Q ss_conf 999999659989999734263458434178999986412--564168567885120336764047760799970664215
Q gi|254780975|r 22 EISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY--SDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHI 99 (224)
Q Consensus 22 ~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~--t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~ 99 (224)
=++++.+.|+..+++-|-|..- .+.-++|++- --...++.|-++| |-+.-+++|+.-|..-.|-..
T Consensus 224 WlerLl~lGVktvQLRIKd~~~-------~~l~~~I~~Ai~l~~~~~a~LfIND---yWqlAI~~gaygVHLGQEDL~-- 291 (439)
T PRK12290 224 WIERLLPLGIKTVQLRIKDPQQ-------PDLEQQIIRAIALGRQYNAQVFIND---YWQLAIKHQAYGVHLGQEDLE-- 291 (439)
T ss_pred HHHHHHHCCCCEEEEEECCCCH-------HHHHHHHHHHHHHHHHCCCEEEEEH---HHHHHHHCCCCEEECCHHHHH--
T ss_conf 9999997699679887379987-------9999999999999986498899814---999999849987862743322--
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCC-CCCCCHHHHHHHHHHHHHHC------CCCEE
Q ss_conf 899986776498259985233344789988620140289983067765-33220135778998654313------86526
Q gi|254780975|r 100 RRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGG-QQLIESTIPKIRQAKALIGK------RSISL 172 (224)
Q Consensus 100 ~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~G-q~f~~~~l~kI~~l~~~~~~------~~~~I 172 (224)
...+..|++.|.+.||+-+...++..-.. -.-+||-+=-|-|--.- =++.|.-+.|++.-.++.+. .++..
T Consensus 292 ~ADL~aI~~AGlrLGiSTH~~~El~rAl~--~~PsYIALG~IfpT~tK~Mp~~PQGL~rL~~y~~l~~~~p~~~~~~~Pt 369 (439)
T PRK12290 292 EANLAALTDAGIRLGLSTHGYYELLRIVQ--IQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYTEQTGFPT 369 (439)
T ss_pred HCCHHHHHHCCCEEEECCCCHHHHHHHHH--CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf 22699998679657651699999999974--4998487557367554579988724999999999851355434579983
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf 98158998899999967998999742663789989999999999
Q gi|254780975|r 173 EVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 173 ~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l 216 (224)
-.=|||+.++++.+.++||+.+-+=|||-.++||..+.+.+..+
T Consensus 370 VAIGGI~~~r~~~V~~tGV~siAVV~AIT~A~dp~~av~~f~~~ 413 (439)
T PRK12290 370 VAIGGIDQSNAEQVWQCGVSSLAVVRAITLAEDPKLVIEFFDQV 413 (439)
T ss_pred EEECCCCHHHHHHHHHHCCCCEEEEEHHHCCCCHHHHHHHHHHH
T ss_conf 88977168888999981998179886333289989999999987
No 82
>pfam00215 OMPdecase Orotidine 5'-phosphate decarboxylase / HUMPS family. This family includes Orotidine 5'-phosphate decarboxylase enzymes EC:4.1.1.23 that are involved in the final step of pyrimidine biosynthesis. The family also includes enzymes such as hexulose-6-phosphate synthase. This family appears to be distantly related to pfam00834.
Probab=98.40 E-value=1.1e-06 Score=63.07 Aligned_cols=199 Identities=18% Similarity=0.189 Sum_probs=111.6
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHC-CCCEEEEEEEEEECC---HHHHHHCCCCC
Q ss_conf 63258899999999999659989999734263458434178999986412-564168567885120---33676404776
Q gi|254780975|r 11 ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY-SDSVFDCHLMISSID---SHINIIADAGC 86 (224)
Q Consensus 11 il~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~~P~---~~i~~~~~~g~ 86 (224)
+++.|..++++.++.+++.+ + |+++.-=+..=-..+|++.++.+++. ..+.+|.-++ +=|. ++++.+.+.|+
T Consensus 4 ~vALD~~~~~~a~~l~~~l~-~--~v~~iKiG~~l~~~~G~~~i~~l~~~~~~iflDlKl~-DI~~Tv~~~~~~~~~~~~ 79 (218)
T pfam00215 4 CVALDVPTLEEALELADELG-P--YVDIIKVGTPLFEAFGLKLVAELRKHGFLIFLDLKFA-DIGNTVAKQAKYKAKLGA 79 (218)
T ss_pred EEEECCCCHHHHHHHHHHHC-C--CCCEEEECHHHHHHCCHHHHHHHHHCCCEEEEEEHHC-CHHHHHHHHHHHHHHCCC
T ss_conf 99967899999999999827-8--5619998899996469999999998699399972122-707899999999985699
Q ss_pred CEEEEECCCCCC-HHHHHHHHHHCC--CEEEEEEECCCCHHHHHHHHHH-C--CEEEEE-EEECCCCCCCCCCHHHHHHH
Q ss_conf 079997066421-589998677649--8259985233344789988620-1--402899-83067765332201357789
Q gi|254780975|r 87 DIITFHPESSPH-IRRSLRTIHAMG--KKTGVAINPETPVAILEDVIDE-I--DMILIM-TVNPGFGGQQLIESTIPKIR 159 (224)
Q Consensus 87 d~i~~H~E~~~~-~~~~i~~i~~~g--~k~Giai~p~T~~~~i~~~l~~-~--D~vliM-~V~PG~~Gq~f~~~~l~kI~ 159 (224)
|++|+|.-+... +....+..++.+ .-.+++.-.+..-..+..+... . +.+... ....|..|---.+.-.+.++
T Consensus 80 d~~Tvh~~~G~~~l~~a~~~a~~~~~~~vl~v~~lts~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~G~V~s~~~~~~~~ 159 (218)
T pfam00215 80 DIVTVHAYAGDGTLKAAKEAAEEYGGRGLLLVAELSSKGSLDLQEEGDLGYTQEIVHRAADLAAGVDGVVASATEPEALR 159 (218)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCHHHHHHHH
T ss_conf 89999157997999999999874399708999946999989999875147299999999974567855765716778887
Q ss_pred HHHHHHH--CCCCE--EEEECCCCH-HHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf 9865431--38652--698158998-899999967998999742663789989999999
Q gi|254780975|r 160 QAKALIG--KRSIS--LEVDGGVTS-RNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL 213 (224)
Q Consensus 160 ~l~~~~~--~~~~~--I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l 213 (224)
+.+.-+. ..++. ...-||.+. .+-....++|+|.+|+|++|.+++||.++++++
T Consensus 160 ~~~~~~~~vtPGI~~~~~~~~dq~r~~~~~~a~~~Gad~iIVGR~I~~a~dP~~aa~~i 218 (218)
T pfam00215 160 EIRPDFLILTPGIGLQGGDAGGQQRVTTPAVAKEAGADIIIVGRGITGAGDPVAAARAI 218 (218)
T ss_pred HHHCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECHHCCCCCCHHHHHHHC
T ss_conf 65145448537768765437897325899999986999999891005799999999729
No 83
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.40 E-value=0.00011 Score=50.19 Aligned_cols=194 Identities=14% Similarity=0.130 Sum_probs=113.8
Q ss_pred ECHHHHCCCHHHHHHHHHHHHHCC-CCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCC
Q ss_conf 817063258899999999999659-9899997342634584341789999864125641685678851203367640477
Q gi|254780975|r 7 IVPSILAADFSRLGEEISNITKAG-AKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAG 85 (224)
Q Consensus 7 IspSil~~d~~~l~~~i~~l~~~~-~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g 85 (224)
|+|.. .|...+.+.++.+.++| +..+++.--.. +.-.+ ....+.+++.+ ..-++-|.+++ .++.-...|
T Consensus 18 ITP~~--~d~~~~~~~l~~aL~~g~Va~vqlR~k~~---d~~~~-~~~a~~L~~lc-~~~gv~lIIND---~~dlA~~~g 87 (221)
T PRK06512 18 VAPPI--ADGAALAKLLRAALSGGDVASVILPDYGL---DEATF-QKQAEKYVPVI-QEAGAAALIAG---DTRIAGRVK 87 (221)
T ss_pred ECCCC--CCHHHHHHHHHHHHCCCCEEEEEEECCCC---CHHHH-HHHHHHHHHHH-HHCCCCEEECC---CHHHHHHCC
T ss_conf 78997--46678999999998469855999757999---99999-99999999999-98299199889---799999709
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHH-HHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6079997066421589998677649825998523334478-998862014028998306776533220135778998654
Q gi|254780975|r 86 CDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAI-LEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKAL 164 (224)
Q Consensus 86 ~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~-i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~ 164 (224)
+|=+ |..-...... ...+..|-..-|......+.+. ..---.-.|||.+=.+.+. .-..-.+..++.++..++.
T Consensus 88 ADGV--HlGq~d~~~~--~aR~~lg~~~IIG~~~~~s~~~A~~A~e~GADYv~fG~~~~~-~k~~a~~~~l~~l~~~~~~ 162 (221)
T PRK06512 88 ADGL--HIEGNAAALA--EAIEKHAPKMIVGFGNLRDRHGAMEVGELQPDYLFFGKLGAD-NKPEAHPRNLSLAEWWAEM 162 (221)
T ss_pred CCEE--EECCCCCCHH--HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCHHHHHHHHHC
T ss_conf 9866--5268753199--999984788678640578899999999739985765787888-8998875425899999974
Q ss_pred HHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 313865269815899889999996799899974266378998999999999999
Q gi|254780975|r 165 IGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK 218 (224)
Q Consensus 165 ~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~ 218 (224)
-.+.+-+=||||.+|+..+.++|+|.+-+.|+||+.+||.++...++.+..
T Consensus 163 ---~~iP~VAIGGIt~~n~~~v~~aGad~vAVisaI~~a~Dp~~A~~~l~~lld 213 (221)
T PRK06512 163 ---IEIPCIVQAGSDLASIVEVAETGAEFVALGRAVFDAHDPPLAVAEANALLD 213 (221)
T ss_pred ---CCCCEEEECCCCHHHHHHHHHHCCCEEEEHHHHHCCCCHHHHHHHHHHHHH
T ss_conf ---799989982789999999998199899885996089999999999999873
No 84
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=98.39 E-value=5.1e-06 Score=58.78 Aligned_cols=199 Identities=16% Similarity=0.244 Sum_probs=107.1
Q ss_pred CCCCEEECHHHHCCCHHHHHHHHHHHHHCC--CCEEEEEEECCEECCCCCCCHHHHHHHHHC-CCCEEEEEEEEEECC--
Q ss_conf 979818817063258899999999999659--989999734263458434178999986412-564168567885120--
Q gi|254780975|r 1 MTPSIQIVPSILAADFSRLGEEISNITKAG--AKQIHFDVMDGCFVPNISFGADVIRSLRSY-SDSVFDCHLMISSID-- 75 (224)
Q Consensus 1 M~k~~~IspSil~~d~~~l~~~i~~l~~~~--~d~iHiDImDg~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~~P~-- 75 (224)
|++++ +++.|..+.++.++.+++.+ +.++-+-. .-| ..+|++.++.+++. ..+.+|.-| .+=|.
T Consensus 1 mk~~l-----ivAlD~~~~~~~~~l~~~l~~~i~~~Kig~--~l~---~~~G~~~i~~l~~~g~~iFlDlKl-~DIpnTv 69 (231)
T PRK00230 1 MDDRL-----IVALDFPSKEEALAFLDQLDPAVLFVKVGM--ELF---TAGGPQFVRELKQRGFKVFLDLKL-HDIPNTV 69 (231)
T ss_pred CCCCE-----EEEECCCCHHHHHHHHHHHCCCCCEEEECH--HHH---HHCCHHHHHHHHHCCCCEEEEEEC-CCCCHHH
T ss_conf 99988-----999648999999999997177552999898--998---641899999999779968987202-2654589
Q ss_pred -HHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHCCCE---EEEEEECCCCHHHHHHHHH---HCCEEEE---EEEECC
Q ss_conf -33676404776079997066421-58999867764982---5998523334478998862---0140289---983067
Q gi|254780975|r 76 -SHINIIADAGCDIITFHPESSPH-IRRSLRTIHAMGKK---TGVAINPETPVAILEDVID---EIDMILI---MTVNPG 144 (224)
Q Consensus 76 -~~i~~~~~~g~d~i~~H~E~~~~-~~~~i~~i~~~g~k---~Giai~p~T~~~~i~~~l~---~~D~vli---M~V~PG 144 (224)
.-+..+.+.|+|++++|.-.... +....+..++.+.+ .|+.+--+.+-+.+..+.. ..+.|+- +..+-|
T Consensus 70 ~~~~~~i~~~g~d~vtvH~~~G~~~l~a~~~~~~~~~~~~kll~Vt~LTS~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g 149 (231)
T PRK00230 70 AKAVRAAAKLGVDMVTVHASGGARMMAAAREGLEPGGSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAG 149 (231)
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 99999998579989998257859999999998871489875999996236898899866757899999999999999969
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH-----------HHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf 7653322013577899865431386526981589988-----------99999967998999742663789989999999
Q gi|254780975|r 145 FGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSR-----------NIKSLVQAGADLLVVGSSFFNQKGEISYAKRL 213 (224)
Q Consensus 145 ~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~-----------~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l 213 (224)
..|---.+ ..++.+|+..++ ++. .+=-||+.+ |-.+..+.|||.+|+|+.|.+++||.++++++
T Consensus 150 ~dGiVcs~---~e~~~ir~~~~~-~~~-ivTPGIr~~~~~~~DQ~rv~TP~~Ai~~GAD~iVVGR~I~~s~dP~~a~~~I 224 (231)
T PRK00230 150 LDGVVCSA---QEAAALREATGP-DFL-LVTPGIRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAEDPAAALEAI 224 (231)
T ss_pred CCEEECCH---HHHHHHHHHCCC-CCE-EECCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf 98486388---899999864598-718-9867727788875674656899999987999999898456899999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780975|r 214 ND 215 (224)
Q Consensus 214 ~~ 215 (224)
.+
T Consensus 225 ~~ 226 (231)
T PRK00230 225 LA 226 (231)
T ss_pred HH
T ss_conf 99
No 85
>PRK13132 consensus
Probab=98.36 E-value=0.00019 Score=48.79 Aligned_cols=200 Identities=11% Similarity=0.202 Sum_probs=129.2
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf 81706325--889999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC 67 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv 67 (224)
+.|=+.+. |.....+.++.+.++|+|.+-+-| .||--. ..+++ -++.++++|. +.| +
T Consensus 13 ~I~yitaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~aDGPvIq~A~~~AL~~G~~~~~~~~~~~~ir~--~~p--i 88 (246)
T PRK13132 13 NIGYIVAGYPNLETTKEFLQRLDESPLDILELGIPYSDPLADGKLIADASFIALQQGVNTDTVFELLARVKT--KKA--L 88 (246)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC--CCC--E
T ss_conf 247882858998999999999997499989978988887655899999999998779989999999997536--999--7
Q ss_pred EEEE-EEC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEE
Q ss_conf 6788-512------033676404776079997066421589998677649825998523334478998862014-02899
Q gi|254780975|r 68 HLMI-SSI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIM 139 (224)
Q Consensus 68 HLMv-~~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM 139 (224)
-||. -|| ++|++++.++|+|-+.+.==-.+......+.++++|...-.-+.|.| .+.+..++...+ +|-++
T Consensus 89 vlM~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~ee~~~~~~~~~~~~i~~I~lvaPTs-~~R~~~i~~~s~gfiY~v 167 (246)
T PRK13132 89 VFLVYYNLIFAYGLEKFVKKAKELGISGLIVPDLPFEESEELIKECEKYNIALIPLISVTS-PKRAKKILKHAKGFIYAL 167 (246)
T ss_pred EEEEECHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCCEEEE
T ss_conf 9996010887729999999998769985775799978989999999985997014425797-899999995489827997
Q ss_pred EEECCCCCCC--CCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHC---CCCHHHHHHHH
Q ss_conf 8306776533--22013577899865431386526981589-988999999679989997426637---89989999999
Q gi|254780975|r 140 TVNPGFGGQQ--LIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFN---QKGEISYAKRL 213 (224)
Q Consensus 140 ~V~PG~~Gq~--f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~---~~d~~~~~~~l 213 (224)
+. .|-.|.. +.+..-+.++.+|+. .+.++.|-=|| +.+.++.+ ..+||-+|+||++.+ .....+..+.+
T Consensus 168 s~-~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~v~~~-~~~aDGvIVGSa~v~~i~~~~~~~~~k~i 242 (246)
T PRK13132 168 GS-IGVTGTKSVEEARLKDKVKEIKSF---TDLPVAVGFGIKNNQDVKRM-RKYADGVIVGTSIVKLFKKFSLDEIMKDI 242 (246)
T ss_pred EC-CCCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHH-HHCCCEEEECHHHHHHHHHCCHHHHHHHH
T ss_conf 53-567777666368899999999962---89986997798999999999-82299999709999999872968899999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780975|r 214 NDL 216 (224)
Q Consensus 214 ~~l 216 (224)
++|
T Consensus 243 ~el 245 (246)
T PRK13132 243 EEI 245 (246)
T ss_pred HHH
T ss_conf 964
No 86
>PRK13137 consensus
Probab=98.30 E-value=0.00014 Score=49.49 Aligned_cols=200 Identities=19% Similarity=0.256 Sum_probs=129.0
Q ss_pred ECHHHHCCC--HHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf 817063258--89999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r 7 IVPSILAAD--FSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC 67 (224)
Q Consensus 7 IspSil~~d--~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv 67 (224)
+.|=+.+.+ +....+.++.+. +|+|.+.+-| .||--. ..+++ .++.++.+|+.++.|+=+
T Consensus 27 li~yitaG~P~~~~s~~~~~~l~-~gaDiiElGiPFSDP~ADGPvIQ~A~~~AL~~G~~l~~~l~~~~~~r~~~~~Pivl 105 (266)
T PRK13137 27 FIPFLTAGYPSAAGFLQVAEELL-AYADLLEVGIPYSDPLGDGPTIQRASEQALAGGTSTRRTLELVRELRALTDTPLVI 105 (266)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf 88786681888789999999997-38998997899888566579999999999977986778999999755568987899
Q ss_pred EEEE-EEC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEE
Q ss_conf 6788-512------033676404776079997066421589998677649825998523334478998862014-02899
Q gi|254780975|r 68 HLMI-SSI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIM 139 (224)
Q Consensus 68 HLMv-~~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM 139 (224)
|. -|| ++|++++.++|+|=+.++==-.+.-.+..+.++++|...-.-+.|.|+.+.+..+....+ +|-+.
T Consensus 106 --M~Y~N~i~~yG~e~F~~~a~~aGvdGlIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtT~~eRi~~i~~~a~GFiY~V 183 (266)
T PRK13137 106 --MTYLNPIYAVGPEEFMRLFQEAGVDGLILPDLPPDQDPEIADLAAEIGLAVTFLIAPTSTPERVKLVARACTGFLYAV 183 (266)
T ss_pred --EECHHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf --934589987589999999997696099947999788899999998759978999379999999999996088828997
Q ss_pred EEECCCCC-CC-CC-CHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHH----CCCCHHHHHH
Q ss_conf 83067765-33-22-01357789986543138652698158998-899999967998999742663----7899899999
Q gi|254780975|r 140 TVNPGFGG-QQ-LI-ESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFF----NQKGEISYAK 211 (224)
Q Consensus 140 ~V~PG~~G-q~-f~-~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif----~~~d~~~~~~ 211 (224)
++. |-.| +. +. ...-+.++.+|+. .+.++.|-=||+. +.+..+.+ .||-+|+||++. ...|..+..+
T Consensus 184 s~~-GvTG~r~~~~~~~l~~~i~~ik~~---t~~Pv~vGFGIs~~e~~~~~~~-~aDGvIVGSaiV~~i~e~~d~~~~~~ 258 (266)
T PRK13137 184 SVT-GVTGMREGLALGEVPDMLRLARQY---AALPVAVGFGVKDKATAAQVAQ-VADGVVVGSAFINAVEEGRDVAALAQ 258 (266)
T ss_pred ECC-CCCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHHHH-HCCEEEEHHHHHHHHHHCCCHHHHHH
T ss_conf 446-766777667879999999999863---8998799826698899999983-19999980999999995898999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780975|r 212 RLN 214 (224)
Q Consensus 212 ~l~ 214 (224)
.+.
T Consensus 259 el~ 261 (266)
T PRK13137 259 EIA 261 (266)
T ss_pred HHH
T ss_conf 999
No 87
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.28 E-value=0.00012 Score=49.96 Aligned_cols=178 Identities=18% Similarity=0.222 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEE---------EEEEEECCHHHHHHCCCCCC
Q ss_conf 999999999996599899997342634584341789999864125641685---------67885120336764047760
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDC---------HLMISSIDSHINIIADAGCD 87 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dv---------HLMv~~P~~~i~~~~~~g~d 87 (224)
..+.+.-..+..+|+.-+-+ =|++.++.+|+.+++|+== -..+..-.+-++.+.++|+|
T Consensus 23 ~im~~mA~Aa~~gGA~giR~------------~~~~dI~aik~~v~lPIIGi~K~~~~~s~VyITPt~~ev~~l~~aGad 90 (222)
T PRK01130 23 EIMAAMALAAEQGGAVGIRA------------NGVEDIKAIREVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGAD 90 (222)
T ss_pred HHHHHHHHHHHHCCCEEEEC------------CCHHHHHHHHHHCCCCEEEEEECCCCCCCEEECCCHHHHHHHHHCCCC
T ss_conf 99999999999689629971------------898899999984799879999546899973751769999999986999
Q ss_pred EEEEECCCCC-----CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEE-CCCCC----CCCCCHHHHH
Q ss_conf 7999706642-----158999867764982599852333447899886201402899830-67765----3322013577
Q gi|254780975|r 88 IITFHPESSP-----HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVN-PGFGG----QQLIESTIPK 157 (224)
Q Consensus 88 ~i~~H~E~~~-----~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~-PG~~G----q~f~~~~l~k 157 (224)
+|.+-+-.-. .+.++++.||+.. ..-+.=..+|--+-+.-.---+|+| +.+ -||.. ....+.-++.
T Consensus 91 iIA~DaT~R~RP~g~~~~~~i~~i~~~~-~~l~MAD~st~eea~~A~~~G~D~V---~TTLsGYT~~t~~~~~~~pD~~l 166 (222)
T PRK01130 91 IIALDATLRPRPDGETLAELVKRIKEKP-GQLLMADCSTLEEGLAAAKLGFDFI---GTTLSGYTEYTEGETPEEPDFAL 166 (222)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHH-CCEEEEECCCHHHHHHHHHCCCCEE---ECCCCCCCCCCCCCCCCCCCHHH
T ss_conf 9998467898989968999999999982-9878985488999999998499999---72334567676778789986999
Q ss_pred HHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
Q ss_conf 8998654313865269815899-88999999679989997426637899899999999999
Q gi|254780975|r 158 IRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLK 217 (224)
Q Consensus 158 I~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~ 217 (224)
++++++. +..+...|+++ .+.+.+..++||+.+|+||||= .|....+++.+..
T Consensus 167 v~~l~~~----~~pvIaEGri~tPe~a~~al~~GA~aVvVGsAIT---rP~~IT~~F~~ai 220 (222)
T PRK01130 167 LKELLKA----GCPVIAEGRINTPEQAKKALELGAHAVVVGSAIT---RPEEITKWFVDAL 220 (222)
T ss_pred HHHHHHC----CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCC---CHHHHHHHHHHHH
T ss_conf 9999958----9989974798999999999984998999897547---9899999999997
No 88
>pfam00697 PRAI N-(5'phosphoribosyl)anthranilate (PRA) isomerase.
Probab=98.27 E-value=0.0002 Score=48.63 Aligned_cols=166 Identities=20% Similarity=0.251 Sum_probs=111.9
Q ss_pred HHHHHHHHCCCCEEEEEEECCEECCCC--CCCHHHHHHHHHCCCCEEEEEEEEEECCHH-HHHHCCCCCCEEEEECCCCC
Q ss_conf 999999965998999973426345843--417899998641256416856788512033-67640477607999706642
Q gi|254780975|r 21 EEISNITKAGAKQIHFDVMDGCFVPNI--SFGADVIRSLRSYSDSVFDCHLMISSIDSH-INIIADAGCDIITFHPESSP 97 (224)
Q Consensus 21 ~~i~~l~~~~~d~iHiDImDg~fvpn~--~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~-i~~~~~~g~d~i~~H~E~~~ 97 (224)
++++.+.+.|+||+=+= |.|+- -+.++..++|.+...... |=+.++.+... .+.+...+.|++=+|-+.+.
T Consensus 10 ed~~~~~~~gad~iGfi-----f~~~SpR~i~~~~a~~i~~~~~~~~-VgVfv~~~~~~i~~~~~~~~~d~vQlHG~e~~ 83 (195)
T pfam00697 10 EDVVAAVPAGADYLGLI-----FAPSSKRQVFPEQAQELRSAVPLLL-VGVFVNQPIEEVLRIAQVLGLDVVQLHGDEPQ 83 (195)
T ss_pred HHHHHHHHCCCCEEEEE-----CCCCCCCCCCHHHHHHHHHHCCCCE-EEEECCCCHHHHHHHHHHCCCCEEEECCCCCH
T ss_conf 99999995899999883-----5799998879999999997589865-99984786899999998379987998899998
Q ss_pred CHHHHHHHHHHCCCEEEEEEEC--CCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 1589998677649825998523--33447899886201402899830677653322013577899865431386526981
Q gi|254780975|r 98 HIRRSLRTIHAMGKKTGVAINP--ETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVD 175 (224)
Q Consensus 98 ~~~~~i~~i~~~g~k~Giai~p--~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vD 175 (224)
. ....++. +.....++.. +.+......+.+.+|++|+=+ .+|-.|+.|.-+.+.++.+ ...++.+-
T Consensus 84 ~---~~~~~~~-~~~~ikai~~~~~~~~~~~~~~~~~~d~~L~Ds-~~GGtG~~fdw~~~~~~~~-------~~~~~~LA 151 (195)
T pfam00697 84 E---YANLLPT-GVPVIKAFHVPASVDDADLARRADHVDLPLLDS-GQGGTGKLFDWSLISKLLL-------SGLPVILA 151 (195)
T ss_pred H---HHHHHHH-CCCCEEEEEECCCCCHHHHHHHCCCCCEEEECC-CCCCCCCCCCHHHHHHHHH-------CCCCEEEE
T ss_conf 9---9999984-688338999478606588987330312551126-7898877548999865552-------16878994
Q ss_pred CCCCHHHHHHHHH-CCCCEEEECHHHHCCC
Q ss_conf 5899889999996-7998999742663789
Q gi|254780975|r 176 GGVTSRNIKSLVQ-AGADLLVVGSSFFNQK 204 (224)
Q Consensus 176 GGvn~~~i~~l~~-~Gad~~V~Gsaif~~~ 204 (224)
||+|.+|+.++.+ .++..+=+.|.+=.++
T Consensus 152 GGL~~~NV~~ai~~~~p~gVDvsSGVE~~p 181 (195)
T pfam00697 152 GGLTPENVSEAIQTLGPAGVDVSSGVETNP 181 (195)
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 688989999999852998999407016889
No 89
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=98.27 E-value=4.5e-06 Score=59.10 Aligned_cols=190 Identities=18% Similarity=0.243 Sum_probs=102.9
Q ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCC-CCCCHHHHHHHHHCC-CCEEEEEEEEEEC---CHHHHHHCCCCC
Q ss_conf 32588999999999996599899997342634584-341789999864125-6416856788512---033676404776
Q gi|254780975|r 12 LAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPN-ISFGADVIRSLRSYS-DSVFDCHLMISSI---DSHINIIADAGC 86 (224)
Q Consensus 12 l~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn-~~~~~~~i~~i~~~t-~~~~dvHLMv~~P---~~~i~~~~~~g~ 86 (224)
++.|..+..+.++.+++.+ +++ ++.-=+. +- ..+|++.++++++.. .+.+|.-++= =| ..++..+.+.|+
T Consensus 3 vALD~~~~~~~~~i~~~~~-~~v--~~~Kig~-~l~~~~g~~~i~~l~~~~~~iflDlK~~D-I~nTv~~~~~~~~~~~~ 77 (216)
T cd04725 3 VALDPPDEEFALALIDALG-PYV--CAVKVGL-ELFEAAGPEIVKELRELGFLVFLDLKLGD-IPNTVAAAAEALLGLGA 77 (216)
T ss_pred EEECCCCHHHHHHHHHHHC-CCC--CEEEECH-HHHHHCCHHHHHHHHHCCCEEEEEHHHCC-HHHHHHHHHHHHHHCCC
T ss_conf 9964899999999999737-856--2999869-99974399999999867977863035378-05899999999984598
Q ss_pred CEEEEECCCCCC-HHHHHHHHHHCCCE-EEEEEECCCCHHHH--------HHHHHHCCEEEEEEEECCCCCCCCCCHHHH
Q ss_conf 079997066421-58999867764982-59985233344789--------988620140289983067765332201357
Q gi|254780975|r 87 DIITFHPESSPH-IRRSLRTIHAMGKK-TGVAINPETPVAIL--------EDVIDEIDMILIMTVNPGFGGQQLIESTIP 156 (224)
Q Consensus 87 d~i~~H~E~~~~-~~~~i~~i~~~g~k-~Giai~p~T~~~~i--------~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~ 156 (224)
|++|+|.=...+ +...++..++.+.+ .+++..-+..-..+ .++... +.-++.+-|..|---.+.-.+
T Consensus 78 d~~Tvh~~~G~~~l~~~~~~~~~~~~~vl~V~~lts~~~~~l~~~~~~~~~~~~~~---~~~~a~~~g~~G~V~~~~~~~ 154 (216)
T cd04725 78 DAVTVHPYGGSDMLKAALEAAEEKGKGLFAVTVLSSPGALDLQEGIPGSLEDLVER---LAKLAREAGVDGVVCGATEPE 154 (216)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHCCCHHHHHHH---HHHHHHHHCCCEEEECCCHHH
T ss_conf 89998467879999999998643598069999716888789998853778999999---999998618977998862489
Q ss_pred HHHHHHHHHHCCCCEE---------EEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf 7899865431386526---------98158998899999967998999742663789989999999
Q gi|254780975|r 157 KIRQAKALIGKRSISL---------EVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL 213 (224)
Q Consensus 157 kI~~l~~~~~~~~~~I---------~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l 213 (224)
.++ |...+ ++.+ ..|++-+-.|..+.++.|+|.+|+|++|.+++||.++++++
T Consensus 155 ~i~--~~~~~--~~~iltPGI~~~~~~~dq~r~~tp~~a~~~gad~ivVGR~I~~a~~p~~~~~~i 216 (216)
T cd04725 155 ALR--RALGP--DFLILTPGIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVAAAEAI 216 (216)
T ss_pred HHH--HHCCC--CCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 999--85088--617973560577776688266899999987999999891014899999999729
No 90
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=98.22 E-value=0.00026 Score=47.84 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=103.2
Q ss_pred CHHHHHHHHHCCCCEEEE---------EEEEEECCHHHHHHCCCCCCEEEEECCCCC---CHHHHHHHHHHCCCEEEEEE
Q ss_conf 789999864125641685---------678851203367640477607999706642---15899986776498259985
Q gi|254780975|r 50 GADVIRSLRSYSDSVFDC---------HLMISSIDSHINIIADAGCDIITFHPESSP---HIRRSLRTIHAMGKKTGVAI 117 (224)
Q Consensus 50 ~~~~i~~i~~~t~~~~dv---------HLMv~~P~~~i~~~~~~g~d~i~~H~E~~~---~~~~~i~~i~~~g~k~Giai 117 (224)
|++.++.+|+.+++|+== -..+..-.+-++.+.++|+|+|.+-+-.-+ .+.++++.||+.+. -+.=
T Consensus 20 ~~~dI~aik~~v~vPIIGi~K~~~~~~~VyITPt~~ev~~l~~aGadiIA~DaT~R~RP~~~~~lv~~i~~~~~--l~MA 97 (192)
T pfam04131 20 GVNNIKAIRAIVDLPIIGIVKRDLPDSPVRITPTMKDIDELANAGADIIALDGTDRPRPVDIESFIKRIKEKGQ--LAMA 97 (192)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCCEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCC--EEEE
T ss_conf 99999999985899879998567899981655889999999985999999846789897589999999998199--8899
Q ss_pred ECCCCHHHHHHHHHHCCEEEEEEEE-CCCCCCCC-CCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEE
Q ss_conf 2333447899886201402899830-67765332-20135778998654313865269815899-889999996799899
Q gi|254780975|r 118 NPETPVAILEDVIDEIDMILIMTVN-PGFGGQQL-IESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLL 194 (224)
Q Consensus 118 ~p~T~~~~i~~~l~~~D~vliM~V~-PG~~Gq~f-~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~ 194 (224)
..+|--+.+.-.---+|+| +.+ -||.+..- .+.-++-++++++ .+..+...|+++ .+.+.+..++|++.+
T Consensus 98 D~st~eea~~A~~~G~D~I---~TTL~GYT~~t~~~~pD~~ll~~l~~----~~~pvIaEGri~tPe~a~~a~~~GA~aV 170 (192)
T pfam04131 98 DCSTFEEGLNAHKLGVDIV---GTTLSGYTGGSNPAEPDFQLVKTLSE----AGCFVIAEGRYNTPELAKKAIEIGADAV 170 (192)
T ss_pred ECCCHHHHHHHHHCCCCEE---ECCCCCCCCCCCCCCCCHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 7499999999998599999---82325578999999997899999986----8993998579899999999998399899
Q ss_pred EECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 974266378998999999999999
Q gi|254780975|r 195 VVGSSFFNQKGEISYAKRLNDLKK 218 (224)
Q Consensus 195 V~Gsaif~~~d~~~~~~~l~~l~~ 218 (224)
|+||+|= .|....+++.+-.+
T Consensus 171 VVGsAIT---rP~~IT~~F~~ai~ 191 (192)
T pfam04131 171 TVGSAIT---RLEEITQWFIEAIK 191 (192)
T ss_pred EECCCCC---CHHHHHHHHHHHHH
T ss_conf 9896537---98999999999972
No 91
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.20 E-value=0.00018 Score=48.85 Aligned_cols=149 Identities=19% Similarity=0.282 Sum_probs=84.0
Q ss_pred HHHHHHCCCCEEEEEEEEEECCHH---HHHHCCCCCCEEEEECC---CCC---------CHHHHHHHHHHCCC-EEEEEE
Q ss_conf 998641256416856788512033---67640477607999706---642---------15899986776498-259985
Q gi|254780975|r 54 IRSLRSYSDSVFDCHLMISSIDSH---INIIADAGCDIITFHPE---SSP---------HIRRSLRTIHAMGK-KTGVAI 117 (224)
Q Consensus 54 i~~i~~~t~~~~dvHLMv~~P~~~---i~~~~~~g~d~i~~H~E---~~~---------~~~~~i~~i~~~g~-k~Giai 117 (224)
++..++..+.|+=+-++...++.| ...+.++|+|.+-+-.- ... ...++++++++.-. -+.+=|
T Consensus 93 i~~~k~~~~~pvIaSi~g~s~ee~~~~a~~~e~~gadaiElNis~~~~~~~~~~~~~~~~~~~iv~~V~~~~~~Pv~vKL 172 (333)
T PRK07565 93 IRRAKEAVDIPVIASLNGSSAGGWVDYARQIEEAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKL 172 (333)
T ss_pred HHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 99877505984598747799899999999997649988999766779886544465078899999999864688568735
Q ss_pred ECCC-CHHHHHHHHHH--CCEEEEE-------------EEEC--CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 2333-44789988620--1402899-------------8306--776533220135778998654313865269815899
Q gi|254780975|r 118 NPET-PVAILEDVIDE--IDMILIM-------------TVNP--GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT 179 (224)
Q Consensus 118 ~p~T-~~~~i~~~l~~--~D~vliM-------------~V~P--G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn 179 (224)
.|+. .+..+..-+.. +|.|.+. ...| +++|....+-++.-|.++++ ..++.|.-=|||.
T Consensus 173 sPn~tdi~~iA~aa~~~Gadgv~~iNT~~~~~Id~e~~~~~~~~~lSgp~~~~~alr~v~~v~~---~~~ipIiG~GGI~ 249 (333)
T PRK07565 173 SPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSG---RVGADLAATTGVH 249 (333)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHC---CCCCCEEEECCCC
T ss_conf 9982109999999997499889984366656331554437368666774312078899999960---4698988888959
Q ss_pred -HHHHHHHHHCCCCEEEECHHHHCC-CC
Q ss_conf -889999996799899974266378-99
Q gi|254780975|r 180 -SRNIKSLVQAGADLLVVGSSFFNQ-KG 205 (224)
Q Consensus 180 -~~~i~~l~~~Gad~~V~Gsaif~~-~d 205 (224)
.+.+-+..-+||+.+=+||++|.. ++
T Consensus 250 sg~DaiE~ilAGAsaVQv~Ta~~~~G~~ 277 (333)
T PRK07565 250 DAEDVIKMLLAGADVVMIASALLRHGPD 277 (333)
T ss_pred CHHHHHHHHHCCCCHHEEEHHHHHHCCH
T ss_conf 8999999998098863362236653727
No 92
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=98.20 E-value=0.00027 Score=47.73 Aligned_cols=170 Identities=19% Similarity=0.217 Sum_probs=117.0
Q ss_pred HHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCC-CCEEEEEEEEEECCHHHH-HHCCCCCCEEEEECCCCCC
Q ss_conf 99999996599899997342634584341789999864125-641685678851203367-6404776079997066421
Q gi|254780975|r 21 EEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYS-DSVFDCHLMISSIDSHIN-IIADAGCDIITFHPESSPH 98 (224)
Q Consensus 21 ~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t-~~~~dvHLMv~~P~~~i~-~~~~~g~d~i~~H~E~~~~ 98 (224)
++++.+.++|+||+=+=+.... |.. .+++..+.|.+.. ..+.-|=+.++.....+. .+...+.|+|-+|-+.+.
T Consensus 10 ~d~~~~~~~g~d~iGfif~~~S--pR~-i~~~~a~~l~~~~~~~~~~V~Vfvn~~~~~i~~~~~~~~~d~vQlHG~e~~- 85 (203)
T cd00405 10 EDALAAAEAGADAIGFIFAPKS--PRY-VSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDESP- 85 (203)
T ss_pred HHHHHHHHCCCCEEEEECCCCC--CCE-ECHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCH-
T ss_conf 9999998579998988556998--971-189999999973699853999991683999999998769988998789997-
Q ss_pred HHHHHHHHHHC-CCEEEEEEECCCC--HHHHHHHHHHCCEEEEEEEE---CCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 58999867764-9825998523334--47899886201402899830---677653322013577899865431386526
Q gi|254780975|r 99 IRRSLRTIHAM-GKKTGVAINPETP--VAILEDVIDEIDMILIMTVN---PGFGGQQLIESTIPKIRQAKALIGKRSISL 172 (224)
Q Consensus 99 ~~~~i~~i~~~-g~k~Giai~p~T~--~~~i~~~l~~~D~vliM~V~---PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I 172 (224)
+ .+..++.. +.+.--|+++..+ ++....|.+.+|++|+=+-. +|.+|+.|.-+.+.++. . ..+.
T Consensus 86 -~-~~~~lk~~~~~~iikai~v~~~~~~~~~~~~~~~~d~~L~Ds~~~~~~GGtG~~fdw~~l~~~~------~--~~p~ 155 (203)
T cd00405 86 -E-YCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA------S--RKPV 155 (203)
T ss_pred -H-HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEECHHHHHHCC------C--CCCE
T ss_conf -9-9999875059649999614977779999874377758999688887688776533889986212------4--7987
Q ss_pred EEECCCCHHHHHHHHHC-CCCEEEECHHHHCCC
Q ss_conf 98158998899999967-998999742663789
Q gi|254780975|r 173 EVDGGVTSRNIKSLVQA-GADLLVVGSSFFNQK 204 (224)
Q Consensus 173 ~vDGGvn~~~i~~l~~~-Gad~~V~Gsaif~~~ 204 (224)
.+-||+|.+|+.++.+. ++..+=+-|.+=.++
T Consensus 156 ~LAGGl~~~NV~~ai~~~~p~gvDvsSgvE~~p 188 (203)
T cd00405 156 ILAGGLTPDNVAEAIRLVRPYGVDVSSGVETSP 188 (203)
T ss_pred EEECCCCHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 997788988999999850998999767015789
No 93
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=98.15 E-value=0.00085 Score=44.57 Aligned_cols=171 Identities=17% Similarity=0.203 Sum_probs=111.2
Q ss_pred HHHHHHHHCCCCEEEEEEECCEECCCC--CCCHHHHHHHHHC-CCCEEEEEEEEEECCHHHHHH-CCCCCCEEEEECCCC
Q ss_conf 999999965998999973426345843--4178999986412-564168567885120336764-047760799970664
Q gi|254780975|r 21 EEISNITKAGAKQIHFDVMDGCFVPNI--SFGADVIRSLRSY-SDSVFDCHLMISSIDSHINII-ADAGCDIITFHPESS 96 (224)
Q Consensus 21 ~~i~~l~~~~~d~iHiDImDg~fvpn~--~~~~~~i~~i~~~-t~~~~dvHLMv~~P~~~i~~~-~~~g~d~i~~H~E~~ 96 (224)
++++.+.++|+|++=+= |.|.- ...++..+.|.+. +....-|=+.|+.+...+..+ ...+.|++=+|=+..
T Consensus 12 eda~~a~~~gaD~iGfi-----f~~~SpR~i~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~vQlHG~e~ 86 (207)
T PRK13958 12 KDVTAASQLPIDAIGFI-----HYEKSKRHQTITQIKKLASAVPNHIDKVCVMVNPDLTTIEHVLSNTSINTIQLHGTES 86 (207)
T ss_pred HHHHHHHHCCCCEEEEE-----CCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 99999996899999995-----5789998659999999998655468869999469799999999857997798648999
Q ss_pred CCHHHHHHHHHHC--CCEEEEEEECCCC-HHHHHHHHHHCCEEEEEEEE--CCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 2158999867764--9825998523334-47899886201402899830--67765332201357789986543138652
Q gi|254780975|r 97 PHIRRSLRTIHAM--GKKTGVAINPETP-VAILEDVIDEIDMILIMTVN--PGFGGQQLIESTIPKIRQAKALIGKRSIS 171 (224)
Q Consensus 97 ~~~~~~i~~i~~~--g~k~Giai~p~T~-~~~i~~~l~~~D~vliM~V~--PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~ 171 (224)
. +.++.++.. +.+.--|+..... ++.+.+|.+.+|++|+=+-. .|-+|+.|.-+.+.+++ +.+
T Consensus 87 ~---~~~~~~~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~fdW~~l~~~~---------~~~ 154 (207)
T PRK13958 87 I---DFIQEIKKKYSSIKITKALAADENIIQNINKYKGFVDLFIIDTPSVSYGGTGQTYDWTILKHIK---------DIP 154 (207)
T ss_pred H---HHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCHHHHHHCC---------CCC
T ss_conf 9---9999997555896799996166768999998675324787657766689987866878886255---------898
Q ss_pred EEEECCCCHHHHHHHHH--CCCCEEEECHHH--HCCCCHHH
Q ss_conf 69815899889999996--799899974266--37899899
Q gi|254780975|r 172 LEVDGGVTSRNIKSLVQ--AGADLLVVGSSF--FNQKGEIS 208 (224)
Q Consensus 172 I~vDGGvn~~~i~~l~~--~Gad~~V~Gsai--f~~~d~~~ 208 (224)
+.+-||+|.+|+..+.. .++..+=+.|.+ =+.+|+..
T Consensus 155 ~~LAGGL~p~NV~~a~~~~~~p~gVDvsSGVE~~G~KD~~K 195 (207)
T PRK13958 155 YLIAGGINSENIQTVNQLKLSHQGYDLASGIEVNGRKDIEK 195 (207)
T ss_pred EEEEECCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHH
T ss_conf 69994698899999996357999898216567889879999
No 94
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.15 E-value=0.00021 Score=48.43 Aligned_cols=173 Identities=20% Similarity=0.234 Sum_probs=116.5
Q ss_pred EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf 881706325889999999999965998999973426345843417899998641-2564168567885120336764047
Q gi|254780975|r 6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINIIADA 84 (224)
Q Consensus 6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~~ 84 (224)
++.|=+-..+..+.....+.|.++|+..+-+-.-- .-..+.++.+++ +++..+-+= +---...++...++
T Consensus 14 ~vi~Vlr~~~~~~a~~~~~al~~gGi~~iEiTl~t-------~~a~~~I~~l~~~~p~~~iGaG--TV~~~e~~~~a~~a 84 (210)
T PRK07455 14 RAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNS-------DQPAELISQLREKLPECIIGTG--TLLTLEDLEEAIAA 84 (210)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC-------CCHHHHHHHHHHHCCCCEEEEE--ECCCHHHHHHHHHC
T ss_conf 97999975999999999999998799889996899-------8899999999987899689888--18789999999986
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 760799970664215899986776498--259985233344789988620140289983067765332201357789986
Q gi|254780975|r 85 GCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAK 162 (224)
Q Consensus 85 g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~ 162 (224)
|++.+.-..= + .++++.+++++. -+|+ .||-|...-+-.-+|.|=+.=.+. .+|- +.+|.++
T Consensus 85 GA~FiVSP~~--~--~~vi~~a~~~~i~~iPGv----~TpsEi~~A~~~G~~~vKlFPA~~-~GG~-------~ylkal~ 148 (210)
T PRK07455 85 GAQFCFTPHV--D--LELIQAAVAADIPIIPGA----LTPTEIVTAWQAGASCVKVFPVQA-VGGA-------DYIKSLQ 148 (210)
T ss_pred CCCEEECCCC--C--HHHHHHHHHCCCCEECCC----CCHHHHHHHHHCCCCEEEECCCHH-CCCH-------HHHHHHH
T ss_conf 9999986888--8--999999998299765886----999999999986998477505132-0679-------9999986
Q ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 5431386526981589988999999679989997426637899
Q gi|254780975|r 163 ALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 163 ~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
.-++ ++++..-||||.+|+..+.++|+..++.||.+|..+.
T Consensus 149 ~p~p--~i~~~ptGGV~~~n~~~yl~ag~~~vg~Gs~l~~~~~ 189 (210)
T PRK07455 149 GPLG--HIPLIPTGGVTLENAQAFIQAGAIAVGLSSQLFPKTL 189 (210)
T ss_pred CCCC--CCCEEECCCCCHHHHHHHHHCCCEEEEECHHHCCHHH
T ss_conf 5489--9938878998988899999689979998846189888
No 95
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.13 E-value=0.00019 Score=48.80 Aligned_cols=166 Identities=19% Similarity=0.306 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEE---------EEEEEECCHHHHHHCCCCCC
Q ss_conf 999999999996599899997342634584341789999864125641685---------67885120336764047760
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDC---------HLMISSIDSHINIIADAGCD 87 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dv---------HLMv~~P~~~i~~~~~~g~d 87 (224)
..+.+.-..+..+|+.-+-+. |++.++.+|+.+++|+== -..+..-.+-++.+.++|+|
T Consensus 27 ~im~~mA~Aa~~gGA~giR~~------------~~~dI~aIk~~v~lPIIGi~K~~~~~s~VyITPt~~ev~~l~~aGad 94 (219)
T cd04729 27 EIMAAMALAAVQGGAVGIRAN------------GVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGAD 94 (219)
T ss_pred HHHHHHHHHHHHCCCEEEEEC------------CHHHHHHHHHCCCCCEEEEEECCCCCCCEEECCCHHHHHHHHHCCCC
T ss_conf 899999999997896399808------------98899999832899889999568899984566889999999985999
Q ss_pred EEEEECCCCC-----CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEE-CCCCCCCC--CCHHHHHHH
Q ss_conf 7999706642-----158999867764982599852333447899886201402899830-67765332--201357789
Q gi|254780975|r 88 IITFHPESSP-----HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVN-PGFGGQQL--IESTIPKIR 159 (224)
Q Consensus 88 ~i~~H~E~~~-----~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~-PG~~Gq~f--~~~~l~kI~ 159 (224)
+|.+-+-.-+ .+.++++.||+.+ ..-+.=..+|--+-+.-.---+|+| +.+ -||....- .+.-++-++
T Consensus 95 iIA~DaT~R~RP~g~~l~~~i~~i~~~~-~~l~MAD~st~ee~~~A~~~G~D~v---gTTL~GYT~~t~~~~~PD~~lv~ 170 (219)
T cd04729 95 IIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALNAAKLGFDII---GTTLSGYTEETAKTEDPDFELLK 170 (219)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHH-CCEEEEECCCHHHHHHHHHCCCCEE---ECCCCCCCCCCCCCCCCCHHHHH
T ss_conf 9999467887989978999999999986-9778875488999999998499899---70214567787889998789999
Q ss_pred HHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHH
Q ss_conf 98654313865269815899-8899999967998999742663
Q gi|254780975|r 160 QAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFF 201 (224)
Q Consensus 160 ~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif 201 (224)
++++.. +..+...|+++ .+.+.+..++||+.+|+||||=
T Consensus 171 ~l~~~~---~~pvIaEGri~tPe~a~~a~~~GA~aVVVGsAIT 210 (219)
T cd04729 171 ELRKAL---GIPVIAEGRINSPEQAAKALELGADAVVVGSAIT 210 (219)
T ss_pred HHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCC
T ss_conf 999975---9939970698999999999983998999895438
No 96
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.11 E-value=0.001 Score=44.01 Aligned_cols=175 Identities=15% Similarity=0.224 Sum_probs=110.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEEC
Q ss_conf 58899999999999659989999734263458434178999986412564168567885120336764047760799970
Q gi|254780975|r 14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHP 93 (224)
Q Consensus 14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~ 93 (224)
.|+.++.+.. .+. ++++|+==.||..- +-.-..+.++.+.+.+..|+.+-==+.+ ..-++.+.+.|++.+.+-.
T Consensus 30 ~dP~~~A~~~---~~~-a~~lhivDLd~a~~-g~~~n~~~I~~i~~~~~~piqvGGGIrs-~e~i~~~l~~Ga~kViigt 103 (228)
T PRK04128 30 GDPVEIALRF---SEY-VDKIHVVDLDGAFE-GKPKNLDVVKNIIEETGLKVQVGGGFRT-YESIKDAYEIGVENVIIGT 103 (228)
T ss_pred CCHHHHHHHH---HHC-CCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCEEEECCCCCC-HHHHHHHHHCCCCEEEECC
T ss_conf 8999999999---966-99899998803014-9832699999998654962897386077-9999999968997698145
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEEEE--------------CCCCHH-HHHHHHHHCCEEEEEEEE-CCCCCCCCCCHHHHH
Q ss_conf 6642158999867764982599852--------------333447-899886201402899830-677653322013577
Q gi|254780975|r 94 ESSPHIRRSLRTIHAMGKKTGVAIN--------------PETPVA-ILEDVIDEIDMILIMTVN-PGFGGQQLIESTIPK 157 (224)
Q Consensus 94 E~~~~~~~~i~~i~~~g~k~Giai~--------------p~T~~~-~i~~~l~~~D~vliM~V~-PG~~Gq~f~~~~l~k 157 (224)
++. +++ .++.+.+..-+.-+++. ....++ .++.+-..+..+++..+. -|-. |. ++.
T Consensus 104 ~a~-~~~-~l~~~~~~~~~ivvslD~k~~~v~~~gw~~~~~~~~~~~~~~~~~~~~~ii~tdI~~dGt~-~G-----~~~ 175 (228)
T PRK04128 104 KAF-DIE-FLEKITSEFNGITVSLDVKGGRIATKGWLEESSIKVEDAYKMLRNYVNRFIYTSIERDGTL-TG-----IEN 175 (228)
T ss_pred CCC-CHH-HHHHHHHHCCCCCEEEECCCCEEECCCCEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCC-CC-----HHH
T ss_conf 125-808-9999997264763688713786852684888998899999999863845376312654300-38-----899
Q ss_pred HHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHH
Q ss_conf 8998654313865269815899-8899999967998999742663789989
Q gi|254780975|r 158 IRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEI 207 (224)
Q Consensus 158 I~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~ 207 (224)
++ ++.. +.++.+-|||+ .+.+..+.+.|++-+++|+|++...=..
T Consensus 176 ~~---~~~~--~~~iiasGGv~s~~Dl~~l~~~g~~gvivG~Al~~g~i~l 221 (228)
T PRK04128 176 IE---RFWG--DEEFIYAGGVSSIEDVKKLAEIGFSGAIIGKALYEGRISL 221 (228)
T ss_pred HH---HHCC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCCH
T ss_conf 99---8616--8968987898999999999967998999985385699789
No 97
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=98.08 E-value=0.00048 Score=46.14 Aligned_cols=163 Identities=13% Similarity=0.109 Sum_probs=108.6
Q ss_pred HHHHHHHHCCCCEEEEEEECCEECCCC--CCCHHHHHHHHHCCCCEE-EEEEEEEECCHHHHHH-CCCCCCEEEEECCCC
Q ss_conf 999999965998999973426345843--417899998641256416-8567885120336764-047760799970664
Q gi|254780975|r 21 EEISNITKAGAKQIHFDVMDGCFVPNI--SFGADVIRSLRSYSDSVF-DCHLMISSIDSHINII-ADAGCDIITFHPESS 96 (224)
Q Consensus 21 ~~i~~l~~~~~d~iHiDImDg~fvpn~--~~~~~~i~~i~~~t~~~~-dvHLMv~~P~~~i~~~-~~~g~d~i~~H~E~~ 96 (224)
++...+.++|+|++=+ .|+|.- ..+++..+.|.+ ..|+ -|-+.|+.+...+..+ ...+.|+|=+|-+..
T Consensus 269 eDA~~a~~~GAD~iGf-----IF~~~SpR~Vs~e~Ak~I~~--~~pi~~VgVFvn~~~~~I~~i~~~~~ld~VQLHG~E~ 341 (459)
T PRK09427 269 QDAKAAYDAGAVYGGL-----IFVEKSPRYVSLEQAQEIIA--AAPLRYVGVFRNADIEDVVDIAKVLSLAAVQLHGSED 341 (459)
T ss_pred HHHHHHHHCCCCEEEE-----EEECCCCCCCCHHHHHHHHH--HCCCCEEEEECCCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 9999999849998989-----97269888799999999998--6899879997489999999999838998899899999
Q ss_pred CCHHHHHHHHHHC---CCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEE---CCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 2158999867764---982599852333447899886201402899830---6776533220135778998654313865
Q gi|254780975|r 97 PHIRRSLRTIHAM---GKKTGVAINPETPVAILEDVIDEIDMILIMTVN---PGFGGQQLIESTIPKIRQAKALIGKRSI 170 (224)
Q Consensus 97 ~~~~~~i~~i~~~---g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~---PG~~Gq~f~~~~l~kI~~l~~~~~~~~~ 170 (224)
. . .+..++.. ++++--+++....... ...+.+|++|+=+-. .|-+|+.|.-+.+.+ +. ..
T Consensus 342 ~--~-~i~~lk~~~~~~i~i~ka~~v~~~~~~--~~~~~~d~~LlDs~~~~~~GGtG~~fDW~~l~~------~~---~~ 407 (459)
T PRK09427 342 Q--A-YIDALREALPKNCQIWKAVSVDDTLPA--RDLQNVDRYLLDSKVGNGQGGTGQTFDWSLLPG------QS---LD 407 (459)
T ss_pred H--H-HHHHHHHHCCCCCEEEEEEECCCCCCC--CHHCCCCEEEECCCCCCCCCCCEEEECHHHCCC------CC---CC
T ss_conf 9--9-999999756888359998513554440--032279989981899999996834863565004------55---89
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 2698158998899999967998999742663789
Q gi|254780975|r 171 SLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 171 ~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
++.+-||+|.+|+.++.+.++.-+=+.|.+=.++
T Consensus 408 ~~iLAGGL~peNV~eAi~~~p~gVDVSSGVE~~p 441 (459)
T PRK09427 408 NVLLAGGLNADNCAQAAQLGCAGLDFNSGVESAP 441 (459)
T ss_pred CEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 8899766998999999956999999165318999
No 98
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=98.08 E-value=0.00024 Score=48.10 Aligned_cols=124 Identities=16% Similarity=0.271 Sum_probs=92.0
Q ss_pred CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECC-CCCCCCC
Q ss_conf 2033676404776079997066421589998677649825998523334478998862-0140289983067-7653322
Q gi|254780975|r 74 IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPG-FGGQQLI 151 (224)
Q Consensus 74 P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG-~~Gq~f~ 151 (224)
...+++.+.+.+++.++++.-.-. ...++.+++.|.++.... |.++......+ -+|.|.+-+.+.| ..|....
T Consensus 103 ~~~~~~~~~~~~~~~v~~~~G~p~--~~~v~~~~~~G~~v~~~v---~s~~~A~~a~~~G~D~iV~qG~eAGGH~G~~~~ 177 (330)
T pfam03060 103 YGDDDDSLKDAKPKVVSFGFGLPP--EDVIERLKESGTKVIPTV---SSAKEARKAEAAGADAVVAQGPEAGGHRGTEVG 177 (330)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCH--HHHHHHHHHCCCEEEEEC---CCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf 799999999749999998998982--799999998799899981---899999999981999899966766777888777
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 013577899865431386526981589-988999999679989997426637899
Q gi|254780975|r 152 ESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 152 ~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
..++.-+.++++.. ++.+...||| +-+.+......||+-+.+||...-.+.
T Consensus 178 ~~~~~L~~~v~~~~---~iPvIaAGGI~dg~~iaaalalGA~gV~mGTrFlat~E 229 (330)
T pfam03060 178 TGTFLLVPTVVDAV---DIPVIAAGGIADGRGIAAALALGAEGVQIGTRFLATKE 229 (330)
T ss_pred CCHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEEECCEEEECCC
T ss_conf 30777789999871---69778526628999999999679989997130011577
No 99
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.08 E-value=0.00028 Score=47.62 Aligned_cols=191 Identities=19% Similarity=0.215 Sum_probs=128.1
Q ss_pred ECHHH--HCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECC---HHHHHH
Q ss_conf 81706--3258899999999999659989999734263458434178999986412564168567885120---336764
Q gi|254780975|r 7 IVPSI--LAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSID---SHINII 81 (224)
Q Consensus 7 IspSi--l~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~---~~i~~~ 81 (224)
=|||- +..+ .+..+..+..+++|+.-+-+ ..|..| |.=+.+.+..+|+.+++|+ +.+|.. ..+.+-
T Consensus 59 aSPS~G~i~~~-~dp~~~A~~Y~~~GA~aiSV-LTe~~~---F~Gs~~~L~~vr~~~~lPi----LrKDFIid~~QI~ea 129 (261)
T PRK00278 59 ASPSKGVIRED-FDPVEIAKAYEEGGAACLSV-LTDERF---FQGSFEYLRAARAAVSLPV----LRKDFIIDPYQIYEA 129 (261)
T ss_pred CCCCCCCCCCC-CCHHHHHHHHHHCCCCEEEE-EECCCC---CCCCHHHHHHHHHHCCCCE----EEEHEECCHHHHHHH
T ss_conf 89999986887-99999999999779968999-513032---4887999999998669987----720101769999999
Q ss_pred CCCCCCEEEEECCCCC--CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 0477607999706642--15899986776498259985233344789988620140289983067765332201357789
Q gi|254780975|r 82 ADAGCDIITFHPESSP--HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIR 159 (224)
Q Consensus 82 ~~~g~d~i~~H~E~~~--~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~ 159 (224)
..+|||.|..-+.... ++.+.++.+++.|..+=+=++-...++..... ..+ +.+||-.-= ..|.- .+++-.
T Consensus 130 ~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~--~a~---iIGINnRnL-~t~~v-d~~~~~ 202 (261)
T PRK00278 130 RAAGADAILLIVAALDDEQLKELLDLAHELGLDVLVEVHDEEELERALKL--GAP---LIGINNRNL-KTFEV-DLDTTE 202 (261)
T ss_pred HHCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHC--CCC---EEEEECCCC-HHCEE-CHHHHH
T ss_conf 98189857898875589999999999998299079776899999999847--998---898746771-12003-789999
Q ss_pred HHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
Q ss_conf 98654313865269815899-88999999679989997426637899899999999
Q gi|254780975|r 160 QAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLN 214 (224)
Q Consensus 160 ~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~ 214 (224)
++...+++ +..+..-+||+ .+.+..+.++|+|.+.+|+++-+++||.+..+.+.
T Consensus 203 ~L~~~ip~-~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~l~~L~ 257 (261)
T PRK00278 203 RLAPLIPK-DRLLVSESGIFTPEDLKRLAKAGADAFLVGESLMRADDPGAALRELF 257 (261)
T ss_pred HHHHHCCC-CCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
T ss_conf 99964899-98899799999999999999779999998978767999899999997
No 100
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=98.06 E-value=0.0013 Score=43.45 Aligned_cols=176 Identities=22% Similarity=0.277 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCC--CCCHHHHHHHHHCCC-CEEEEEEEEEECCHHH-HHHCCCCCCEEEEE
Q ss_conf 9999999999965998999973426345843--417899998641256-4168567885120336-76404776079997
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNI--SFGADVIRSLRSYSD-SVFDCHLMISSIDSHI-NIIADAGCDIITFH 92 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~--~~~~~~i~~i~~~t~-~~~dvHLMv~~P~~~i-~~~~~~g~d~i~~H 92 (224)
.+++ +++.+.++|+||+=+ .|+|.- ...++..+.|.+... .+ -|=+.++.+...+ +.....+.|.|=+|
T Consensus 10 t~~e-da~~a~~~gad~iG~-----If~~~SpR~Vs~~~a~~i~~~v~~~~-~VgVf~n~~~~~i~~i~~~~~ld~VQlH 82 (208)
T COG0135 10 TRLE-DAKAAAKAGADYIGF-----IFVPKSPRYVSPEQAREIASAVPKVK-VVGVFVNESIEEILEIAEELGLDAVQLH 82 (208)
T ss_pred CCHH-HHHHHHHCCCCEEEE-----EECCCCCCCCCHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 9899-999999769988999-----97479987179999999998278887-7999879998999999983399889988
Q ss_pred CCCCCCHHHHHHHHHHCC-CEEEEEEECCCC--HHHHHHHHHHCCEEEEEEE---ECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 066421589998677649-825998523334--4789988620140289983---0677653322013577899865431
Q gi|254780975|r 93 PESSPHIRRSLRTIHAMG-KKTGVAINPETP--VAILEDVIDEIDMILIMTV---NPGFGGQQLIESTIPKIRQAKALIG 166 (224)
Q Consensus 93 ~E~~~~~~~~i~~i~~~g-~k~Giai~p~T~--~~~i~~~l~~~D~vliM~V---~PG~~Gq~f~~~~l~kI~~l~~~~~ 166 (224)
-+... +.+..+++.+ ..+.-|+..... .+....+...+|.+|+=+- .+|-+||.|.-+.+.+. +
T Consensus 83 G~e~~---~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~---~---- 152 (208)
T COG0135 83 GDEDP---EYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL---R---- 152 (208)
T ss_pred CCCCH---HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCEECHHHCCCC---C----
T ss_conf 98999---9999998534875699998677622445544148774899818887778978867797770542---4----
Q ss_pred CCCCEEEEECCCCHHHHHHHHHCCC-CEEEECHHHH---CCCCHHHHH
Q ss_conf 3865269815899889999996799-8999742663---789989999
Q gi|254780975|r 167 KRSISLEVDGGVTSRNIKSLVQAGA-DLLVVGSSFF---NQKGEISYA 210 (224)
Q Consensus 167 ~~~~~I~vDGGvn~~~i~~l~~~Ga-d~~V~Gsaif---~~~d~~~~~ 210 (224)
...++..-||+|.+|+.+..+.+. ..+=+.|.+= +.+|+....
T Consensus 153 -~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvSSGVE~~pG~KD~~kv~ 199 (208)
T COG0135 153 -LSKPVMLAGGLNPDNVAEAIALGPPYGVDVSSGVESSPGIKDPAKVK 199 (208)
T ss_pred -CCCCEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf -56987997788989999999835983798155311689988999999
No 101
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.04 E-value=3.5e-05 Score=53.40 Aligned_cols=37 Identities=16% Similarity=0.498 Sum_probs=18.5
Q ss_pred CCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 6526981589-988999999679989997426637899
Q gi|254780975|r 169 SISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 169 ~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
..++++.||| +.+.+..+.++|||.+|+||+.|.+++
T Consensus 73 ~~pi~vGGGIrs~e~~~~~l~~GadkVvigS~a~~n~~ 110 (241)
T PRK00748 73 DIPVQLGGGIRDLETVEAYLDAGVARVIIGTAAVKNPE 110 (241)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHCHH
T ss_conf 99999827707499999999769775886471033968
No 102
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=98.03 E-value=0.00024 Score=48.05 Aligned_cols=175 Identities=18% Similarity=0.220 Sum_probs=119.3
Q ss_pred CCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHH
Q ss_conf 981881706325889999999999965998999973426345843417899998641-2564168567885120336764
Q gi|254780975|r 3 PSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINII 81 (224)
Q Consensus 3 k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~ 81 (224)
++-+|.|=+-..|..+..+..+.|.++|+..+-+-.-. .-..+.++.+++ ++++.+=+ =+---...++..
T Consensus 6 ~~~~iipV~r~~~~~~a~~~~~al~~~Gi~~iEiTl~t-------~~a~~~I~~l~~~~p~~~iGa--GTV~~~e~~~~a 76 (196)
T pfam01081 6 REAKIVPVIVIKDKEDALPLAEALAAGGIRVLEVTLRT-------PCALDAIRLLRKNRPDALVGA--GTVLNAQQLAEA 76 (196)
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHHHCCCCEEEE--EECCCHHHHHHH
T ss_conf 66997999977999999999999998799889994798-------279999999996499967999--837689999999
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECC-CCCCCCCCHHHHHH
Q ss_conf 047760799970664215899986776498--259985233344789988620140289983067-76533220135778
Q gi|254780975|r 82 ADAGCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPG-FGGQQLIESTIPKI 158 (224)
Q Consensus 82 ~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG-~~Gq~f~~~~l~kI 158 (224)
.++|++.+.-.. .+ .++++.++++|. -+|+. ||-|...-+-.-++.|-+ -|. -.| -.+.+
T Consensus 77 ~~aGA~FivSP~--~~--~~v~~~a~~~~i~~iPGv~----TpsEi~~A~~~G~~~vKl---FPA~~~G------g~~~l 139 (196)
T pfam01081 77 AEAGAQFVVSPG--LT--ADLLKHAVDVKIPLIPGVS----TPSEIMLGLDLGLTRFKF---FPAEASG------GVPAI 139 (196)
T ss_pred HHCCCCEEECCC--CH--HHHHHHHHHCCCCEECCCC----CHHHHHHHHHCCCCEEEE---CCCHHCC------CHHHH
T ss_conf 974999999787--63--9999999973996637859----999999999879998997---8731018------49999
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 99865431386526981589988999999679989997426637899
Q gi|254780975|r 159 RQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 159 ~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
+.++.-++ +++++.-||||.+|+.+..++|+..++.||.+|..+.
T Consensus 140 kal~~p~p--~~~f~ptGGv~~~N~~~yl~~g~v~~~~GS~l~~~~l 184 (196)
T pfam01081 140 KALAGPFP--QVRFCPTGGIHPANVRDYLALPNILCVGGSWLVPASL 184 (196)
T ss_pred HHHHCCCC--CCEEEEECCCCHHHHHHHHHCCCEEEEECHHHCCHHH
T ss_conf 99857799--9869980798988899999689869998936489889
No 103
>pfam02581 TMP-TENI Thiamine monophosphate synthase/TENI. Thiamine monophosphate synthase (TMP) (EC:2.5.1.3) catalyses the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate. This Pfam family also includes the regulatory protein TENI.
Probab=98.03 E-value=0.0003 Score=47.48 Aligned_cols=176 Identities=19% Similarity=0.152 Sum_probs=102.8
Q ss_pred ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf 81706325889999999999965998999973426345843417899998641256416856788512033676404776
Q gi|254780975|r 7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC 86 (224)
Q Consensus 7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~ 86 (224)
|+|--++. .++.+.++.+-+.|++.+|+-.-+-.- -. -.+..+.+++..+ ...+-|.+++....... .|+
T Consensus 4 It~~~~~~--~~~~~~~~~~l~~Gv~~vqlR~K~~~~---~~-~~~~a~~l~~i~~-~~~~~liin~~~~lA~~---~~~ 73 (180)
T pfam02581 4 VTDPGLDG--EDLLEVVEEALKGGVTIVQLREKDLDD---RE-LLELAERLRALCR-KYGVPLIINDRVDLALA---VGA 73 (180)
T ss_pred ECCCCCCC--HHHHHHHHHHHHCCCCEEEECCCCCCH---HH-HHHHHHHHHHHHH-HHCCEEEECCHHHHHHH---HCC
T ss_conf 86997475--479999999998699999987898799---99-9999999999999-82997998785999997---297
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 079997066421589998677649825998523334478998862-0140289983067765332201357789986543
Q gi|254780975|r 87 DIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALI 165 (224)
Q Consensus 87 d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~ 165 (224)
|- +|....+-...........+..+|.+.+ +. +.+..... .+||+.+=.|-|-.+-....+--++.++++++.
T Consensus 74 dG--vHL~~~d~~~~~~r~~~~~~~iiG~S~h--~~-~e~~~a~~~gaDYi~~gpvf~T~sK~~~~~~g~~~~~~~~~~- 147 (180)
T pfam02581 74 DG--VHLGQDDLPVAEARELLGPDKIIGVSTH--TL-EEALEAEALGADYIGFGPVFPTPTKPDAPPLGLEGLRAIAEA- 147 (180)
T ss_pred CE--EECCCCCCCHHHHHHHCCCCCEEEECCC--CH-HHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHH-
T ss_conf 98--9448676679999986497768974478--89-999999871998088747677799999887898999999985-
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 13865269815899889999996799899974266
Q gi|254780975|r 166 GKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSF 200 (224)
Q Consensus 166 ~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai 200 (224)
.++++.+=||||.+|+.++.++|++.+.+=|+|
T Consensus 148 --~~~Pv~AiGGI~~~n~~~~~~~Ga~gvAvis~i 180 (180)
T pfam02581 148 --VNIPVVAIGGITPENVPEVLEAGADGVAVVSAI 180 (180)
T ss_pred --CCCCEEEECCCCHHHHHHHHHCCCCEEEEECCC
T ss_conf --899999990989999999998599889996509
No 104
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.02 E-value=0.00064 Score=45.35 Aligned_cols=173 Identities=20% Similarity=0.276 Sum_probs=115.9
Q ss_pred EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEE--EEECCHHHHHHCC
Q ss_conf 88170632588999999999996599899997342634584341789999864125641685678--8512033676404
Q gi|254780975|r 6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLM--ISSIDSHINIIAD 83 (224)
Q Consensus 6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLM--v~~P~~~i~~~~~ 83 (224)
.|.|=|-+.+..+...-.+.|.++|+..+-+-.-- |+ ..+.++.+++. +|-++.+= +---...+++..+
T Consensus 11 plvaIlR~~~~~~a~~~~~al~~~Gi~~iEVTl~t----p~---a~~~I~~l~~~--~~~~~~iGAGTVlt~e~~~~ai~ 81 (206)
T PRK09140 11 PLIAILRGITPDEALAHVGALIEAGFRAIEIPLNS----PD---PFDSIAALVKA--LGDDALIGAGTVLSPEQVDRLAD 81 (206)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC----CC---HHHHHHHHHHH--CCCCEEEEEEECCCHHHHHHHHH
T ss_conf 97999958999999999999998699889991799----76---99999999996--79865998620467999999998
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCE--EEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 77607999706642158999867764982--5998523334478998862014028998306776533220135778998
Q gi|254780975|r 84 AGCDIITFHPESSPHIRRSLRTIHAMGKK--TGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQA 161 (224)
Q Consensus 84 ~g~d~i~~H~E~~~~~~~~i~~i~~~g~k--~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l 161 (224)
+|++.+.-.. .+ .+++++++++|.- +|. .||-|...-+-.-+|.+-+. |... + -.+-++.+
T Consensus 82 aGA~FiVSP~--~~--~~vi~~a~~~~i~~iPG~----~TPsEi~~A~~~Ga~~vKlF---PA~~---~---Gp~~ikal 144 (206)
T PRK09140 82 AGGRLIVTPN--ID--PEVIRRAVAYGMTVMPGV----ATPTEAFAALRAGADALKLF---PASQ---L---GPAGIKAL 144 (206)
T ss_pred CCCCEEECCC--CC--HHHHHHHHHCCCCCCCCC----CCHHHHHHHHHCCCCEEEEC---CHHC---C---CHHHHHHH
T ss_conf 5999999999--98--999999998299652785----99999999998598715657---5110---5---99999998
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 65431386526981589988999999679989997426637899
Q gi|254780975|r 162 KALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 162 ~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
+.-++ .++++.--||||.+|+.++.++|+..+-.||.+|+...
T Consensus 145 ~~p~P-~~~~~~ptGGV~~~N~~~~l~aGa~avG~Gs~L~~~~~ 187 (206)
T PRK09140 145 RAVLP-PDVPVFAVGGVTPENLAPYLAAGAAGFGLGSALYRPGQ 187 (206)
T ss_pred HCCCC-CCCEEEECCCCCHHHHHHHHHCCCCEEEECHHCCCCCC
T ss_conf 64389-99989953798888899999869919996065159999
No 105
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.01 E-value=0.00015 Score=49.41 Aligned_cols=154 Identities=15% Similarity=0.267 Sum_probs=92.9
Q ss_pred CCCCEEEEEEEEEECCHHH---HHHCCC-CCCEEEEECC-----C--------CCCHHHHHHHHHHCCCEE-EEEEECCC
Q ss_conf 2564168567885120336---764047-7607999706-----6--------421589998677649825-99852333
Q gi|254780975|r 60 YSDSVFDCHLMISSIDSHI---NIIADA-GCDIITFHPE-----S--------SPHIRRSLRTIHAMGKKT-GVAINPET 121 (224)
Q Consensus 60 ~t~~~~dvHLMv~~P~~~i---~~~~~~-g~d~i~~H~E-----~--------~~~~~~~i~~i~~~g~k~-Giai~p~T 121 (224)
..+.|+=+-++..+++.|. +.+.++ |+|++.+-.- . .+.+.++++.+++.-.++ .+=|.|+.
T Consensus 89 ~~~~pvi~si~~~~~~d~~~~~~~l~~~~~ad~ielNiScPn~~~~g~~~~~~~~~l~~i~~~v~~~~~~Pv~vKlsP~~ 168 (301)
T PRK07259 89 EFDTPIIANIAGSTPEEYVEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKSVSKVPVIVKLTPNV 168 (301)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 06998799737677689999999864556888899965478888526660879999999999998734897799807871
Q ss_pred -CHHHHHHHHHH--CCEEEEEEE------------------ECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-
Q ss_conf -44789988620--140289983------------------06776533220135778998654313865269815899-
Q gi|254780975|r 122 -PVAILEDVIDE--IDMILIMTV------------------NPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT- 179 (224)
Q Consensus 122 -~~~~i~~~l~~--~D~vliM~V------------------~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn- 179 (224)
.+..+...+.. +|.|.+--. .-|.||.+..+.++..|+++++.. ++.|.-=|||.
T Consensus 169 ~~i~~ia~~~~~~gadgvv~~Nt~~~~~id~~~~~p~~~~~~GGlSG~~l~~~al~~v~~~~~~~---~ipIig~GGI~s 245 (301)
T PRK07259 169 TDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVAKAV---DIPIIGMGGIST 245 (301)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCEEEECCCCC
T ss_conf 21999999999759988999567767653235677433578886347335189999999998516---988897679799
Q ss_pred HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 889999996799899974266378998999999999999
Q gi|254780975|r 180 SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK 218 (224)
Q Consensus 180 ~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~ 218 (224)
.+.+.+...+||+.+=++|++|..+. -..+-+++|.+
T Consensus 246 ~~da~e~i~aGAs~VQv~Tav~~Gp~--~~~~i~~~L~~ 282 (301)
T PRK07259 246 AEDAIEFMMAGASAVQVGTANFIDPY--AFPEIIEGLEA 282 (301)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHCCCH--HHHHHHHHHHH
T ss_conf 99999999839879872123314906--99999999999
No 106
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=98.01 E-value=0.00075 Score=44.94 Aligned_cols=188 Identities=15% Similarity=0.174 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCC
Q ss_conf 99999999999659989999734263458434178999986412564168567885120336764047760799970664
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESS 96 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~ 96 (224)
..+.+.++...++|+..+++-=-+..--. | .+.-+.+++.+ -...+-|.|+| -++-...+|+| +|.--.
T Consensus 18 ~~l~~vV~~Al~GGvt~VQlRdK~~~~~e---~-~~~a~~l~~l~-~~~gvpliVND---rvdvAla~~Ad---VHlGQ~ 86 (738)
T PRK09517 18 EKVAGIVDSAISGGVSVVQLRDKNAGVED---V-RAAAKELKELC-DARGVALVVND---RLDVAVELGLH---VHIGQG 86 (738)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCHHH---H-HHHHHHHHHHH-HHCCCCEEECC---HHHHHHHCCCC---CEECCC
T ss_conf 98899999999769958996489998899---9-99999999999-87199789728---59999875899---641887
Q ss_pred CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH-HHCCEEEEEEEECCCCCCCC-CCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 2158999867764982599852333447899886-20140289983067765332-201357789986543138652698
Q gi|254780975|r 97 PHIRRSLRTIHAMGKKTGVAINPETPVAILEDVI-DEIDMILIMTVNPGFGGQQL-IESTIPKIRQAKALIGKRSISLEV 174 (224)
Q Consensus 97 ~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l-~~~D~vliM~V~PG~~Gq~f-~~~~l~kI~~l~~~~~~~~~~I~v 174 (224)
+-+-.....+--.+.-.|++.+--..++.....- ..+|||-+=.|-|--.-..- .+-.++.++++++. .++.+-.
T Consensus 87 Dlp~~~aR~llG~~~iiGlS~~t~~~~~~a~~~~a~~vDYlG~Gpvf~T~TK~da~~~~G~~~l~~i~~~---~~iPvVA 163 (738)
T PRK09517 87 DTPYTQARRLLPAHLELGLTIETLDQLEAVIAQCAETPDVIGIGPVASTATKPDAPPALGVDGIAEIAAV---AQIASVA 163 (738)
T ss_pred CCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCCEEE
T ss_conf 7999999986599878997259989999998545678987857887789998888878899999999984---7999899
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 15899889999996799899974266378998999999999999
Q gi|254780975|r 175 DGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK 218 (224)
Q Consensus 175 DGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~ 218 (224)
=||||.+|+..+..+|+|-+-+=|+|+.++||..+++.|++.-+
T Consensus 164 IGGI~~~n~~~v~~aGadGvAVVSAI~~A~DP~aAaReLr~a~~ 207 (738)
T PRK09517 164 IGGVGLRNAAELAATGIDGLCVVSAIMAAPNPAAAARELRTAFQ 207 (738)
T ss_pred ECCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHH
T ss_conf 89988888999997499889842344169999999999999997
No 107
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=97.99 E-value=0.0018 Score=42.56 Aligned_cols=176 Identities=14% Similarity=0.188 Sum_probs=123.8
Q ss_pred HHHHHHHHH-CCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 999999996-5998999973426345843417899998641256416856788512033676404776079997066421
Q gi|254780975|r 20 GEEISNITK-AGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPH 98 (224)
Q Consensus 20 ~~~i~~l~~-~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~ 98 (224)
.+..+...+ .|+.|||+==.||-+.+... +.+.|++|++.++.|++|== =-.-.+.++++.+.|++++++=.=+.++
T Consensus 31 ~~~A~~~~~~~GA~~iHvVDLDGA~~g~~~-N~~~i~~I~~~~~~~vQvGG-GIRs~e~v~~ll~~Gv~RVI~GT~A~~~ 108 (241)
T TIGR00007 31 VEAAKKWEEFQGAKRIHVVDLDGALEGGPV-NLEVIKKIVEELGVPVQVGG-GIRSLEDVEKLLDLGVDRVIIGTAAVEN 108 (241)
T ss_pred HHHHHHHHHCCCCCEEEEEECCHHHCCCCC-HHHHHHHHHHHCCCCEEECC-CCCCHHHHHHHHHCCCCEEEEEEEEECC
T ss_conf 999999984169715999845100068620-07899999986185179817-5168899999997398579973322108
Q ss_pred HHHHHHHHHHCC-CEEEEEEE--------------------CCCCHHHHHHHHHHCC-EEEEEE--EE-CCCCCCCCCCH
Q ss_conf 589998677649-82599852--------------------3334478998862014-028998--30-67765332201
Q gi|254780975|r 99 IRRSLRTIHAMG-KKTGVAIN--------------------PETPVAILEDVIDEID-MILIMT--VN-PGFGGQQLIES 153 (224)
Q Consensus 99 ~~~~i~~i~~~g-~k~Giai~--------------------p~T~~~~i~~~l~~~D-~vliM~--V~-PG~~Gq~f~~~ 153 (224)
++.+.+++++.+ -++-++|. .-|+.+..+.|-+ +. .-.++. |+ -|.- +..+-+
T Consensus 109 ~~~v~~~~~~~g~~~i~V~lD~~~g~~G~~~V~v~GW~E~s~~~~~~~~~~~~~-~G~~~~ii~TdI~~DGtl-~G~n~~ 186 (241)
T TIGR00007 109 PDLVKELLKEYGPERIVVSLDARDGEEGVKEVAVKGWKEKSEVSLEELAKRLEE-LGELEGIIYTDISRDGTL-SGPNFE 186 (241)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCHHHHHHHHHH-CCCCCEEEEEEEECCCCE-ECCCCC
T ss_conf 699999999848996599986314887517888740411356279999999851-586336899752006720-078732
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHH--CCCCEEEECHHHHCCC
Q ss_conf 35778998654313865269815899-889999996--7998999742663789
Q gi|254780975|r 154 TIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQ--AGADLLVVGSSFFNQK 204 (224)
Q Consensus 154 ~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~--~Gad~~V~Gsaif~~~ 204 (224)
.+ +++.+.+ .+..+.+=|||+ .+-+..|.+ .|+.-+|+|+||+...
T Consensus 187 ~~---~~~~~~~--~~~~viaSGGv~s~~D~~~L~~~~~G~~GvIvGkALY~g~ 235 (241)
T TIGR00007 187 LT---KELVKAL--VNVPVIASGGVSSIDDLRALKEIELGVYGVIVGKALYEGK 235 (241)
T ss_pred HH---HHHHHHH--CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
T ss_conf 88---9999873--5841899426578899999997159832799862111688
No 108
>PRK02621 consensus
Probab=97.97 E-value=5.5e-05 Score=52.19 Aligned_cols=38 Identities=34% Similarity=0.494 Sum_probs=21.2
Q ss_pred CCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf 65269815899-889999996799899974266378998
Q gi|254780975|r 169 SISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGE 206 (224)
Q Consensus 169 ~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~ 206 (224)
.+++++-|||+ .+.+..+.++|||.++.||+.+++++.
T Consensus 74 ~ipi~vGGGIrs~e~~~~ll~~GadkVii~s~a~~np~~ 112 (254)
T PRK02621 74 FIPLTVGGGISSLEGIKELLRAGADKVSLNSAAVRDPDL 112 (254)
T ss_pred CCCEEEECCEEEHHHHHHHHHCCCCEEEECCHHHHCCCH
T ss_conf 985899633535799999997499989998867647354
No 109
>PRK06857 consensus
Probab=97.96 E-value=0.00069 Score=45.17 Aligned_cols=171 Identities=18% Similarity=0.238 Sum_probs=117.5
Q ss_pred EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf 881706325889999999999965998999973426345843417899998641-2564168567885120336764047
Q gi|254780975|r 6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINIIADA 84 (224)
Q Consensus 6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~~ 84 (224)
+|.|=+-..|..+..+-.+.|.++|+..+-+-.-. | -..+.++.+++ ++++.+-+ =+---...++...++
T Consensus 13 ~iipVir~~~~~~a~~~~~al~~gGi~~iEiTlrt----~---~a~~~I~~l~~~~p~~~vGa--GTV~~~e~~~~a~~a 83 (209)
T PRK06857 13 KVVPVIAIDDAEDILPLAKVLAENGLPVAEITFRS----A---AAAEAIRLLREAYPDMLIGA--GTVLTPEQVDAAKEA 83 (209)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC----C---CHHHHHHHHHHHCCCCEEEE--EECCCHHHHHHHHHC
T ss_conf 97999975999999999999998799889995899----3---29999999997589948999--937679999999983
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECC--CCCCCCCCHHHHHHHH
Q ss_conf 760799970664215899986776498--259985233344789988620140289983067--7653322013577899
Q gi|254780975|r 85 GCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPG--FGGQQLIESTIPKIRQ 160 (224)
Q Consensus 85 g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG--~~Gq~f~~~~l~kI~~ 160 (224)
|++.+.-..= . .++++++++++. -+|++ ||-|...-+-.-++.|=+ -|. .+|. +-+|.
T Consensus 84 GA~FiVSP~~--~--~~v~~~a~~~~i~~iPGv~----TpsEi~~A~~~G~~~vKl---FPA~~~gG~-------~~lka 145 (209)
T PRK06857 84 GADFIVSPGF--N--PNTVKYCQQLNIPIVPGVN----NPSLVEQALEMGLTTLKF---FPAEASGGV-------NMLKA 145 (209)
T ss_pred CCCEEECCCC--C--HHHHHHHHHCCCCEECCCC----CHHHHHHHHHCCCCEEEE---CCCCCCCCH-------HHHHH
T ss_conf 9999990899--9--9999999974996547879----999999999879998997---866212669-------99999
Q ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 865431386526981589988999999679989997426637899
Q gi|254780975|r 161 AKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 161 l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
++.-++ +++++.-||||.+|+..+.++|+=..|.||.+|..+.
T Consensus 146 l~~p~p--~~~~~ptGGV~~~N~~~yl~~~~v~~~gGS~l~~~~~ 188 (209)
T PRK06857 146 LLAPYP--NLQIMPTGGINPSNIKDYLAIPNVVACGGTWMVPKKL 188 (209)
T ss_pred HHCCCC--CCEEEECCCCCHHHHHHHHCCCCEEEEECHHHCCHHH
T ss_conf 865389--9809964898887899998599889998936589999
No 110
>pfam00218 IGPS Indole-3-glycerol phosphate synthase.
Probab=97.96 E-value=0.00094 Score=44.29 Aligned_cols=192 Identities=15% Similarity=0.190 Sum_probs=126.8
Q ss_pred ECHHH--HCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf 81706--3258899999999999659989999734263458434178999986412564168567885120336764047
Q gi|254780975|r 7 IVPSI--LAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADA 84 (224)
Q Consensus 7 IspSi--l~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ 84 (224)
=|||- ++.+ .+..+..+..+++|+.-+-+ ..|..| |.=+++.+..+|+.+++|+=.-=-+-+|. .+.+-..+
T Consensus 57 aSPS~G~i~~~-~dp~~iA~~Y~~~GA~aiSV-LTd~~~---F~Gs~~~L~~vr~~v~lPiLrKDFIid~y-QI~ear~~ 130 (254)
T pfam00218 57 ASPSKGLIRED-FDPAEIARAYEAAGASAISV-LTEPKY---FQGSLEYLREVREAVSLPVLRKDFIIDEY-QIYEARAY 130 (254)
T ss_pred CCCCCCCCCCC-CCHHHHHHHHHHCCCCEEEE-ECCCCC---CCCCHHHHHHHHHHCCCCEECCHHEEEHH-HHHHHHHC
T ss_conf 89999986898-99999999999779837998-426786---79879999999986488511141046599-99999980
Q ss_pred CCCEEEEECCCCCC--HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 76079997066421--5899986776498259985233344789988620140289983067765332201357789986
Q gi|254780975|r 85 GCDIITFHPESSPH--IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAK 162 (224)
Q Consensus 85 g~d~i~~H~E~~~~--~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~ 162 (224)
|||.|..-+....+ +.+.++..++.|..+=+-++-...++..... ..+ +.+||-.-= ..|. -.++.-.++.
T Consensus 131 GADaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~al~~--~a~---iIGINNRnL-~tf~-vd~~~t~~L~ 203 (254)
T pfam00218 131 GADTVLLIVAVLSDELLEELYEYARSLGMEPLVEVHNEEELERALAL--GAK---LIGVNNRNL-KTFE-VDLNTTRRLA 203 (254)
T ss_pred CCCEEEHHHHCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHC--CCC---EEEECCCCH-HHHH-CCHHHHHHHH
T ss_conf 88863144711999999999999998488679886899999999848--997---896327884-6510-0579999999
Q ss_pred HHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH
Q ss_conf 5431386526981589-9889999996799899974266378998999999
Q gi|254780975|r 163 ALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKR 212 (224)
Q Consensus 163 ~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~ 212 (224)
..++. +..+-.-+|| +.+.+..+.++|+|.+.+|+++-+++||.++.+.
T Consensus 204 ~~ip~-~~~~VsESGI~~~~di~~l~~~G~~~~LIGe~lm~~~dp~~~l~~ 253 (254)
T pfam00218 204 PMVPE-DVLLVAESGISTPEDVEKLAKHGANAFLVGESLMRAPDVRAAIRE 253 (254)
T ss_pred HHCCC-CCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHC
T ss_conf 55898-987998389999999999998799999989687579998999960
No 111
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.95 E-value=0.0005 Score=46.06 Aligned_cols=192 Identities=17% Similarity=0.196 Sum_probs=127.2
Q ss_pred ECHHHHC-CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCC
Q ss_conf 8170632-588999999999996599899997342634584341789999864125641685678851203367640477
Q gi|254780975|r 7 IVPSILA-ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAG 85 (224)
Q Consensus 7 IspSil~-~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g 85 (224)
=|||--. ....+..+..+..+++|++-+-+ ..|.+| |.=+.+.++.+|+.+++|+=.-=-+-+| ..+.+-..+|
T Consensus 20 ~SPS~G~i~~~~d~~~~A~~Y~~~GA~aiSV-LTe~~~---F~Gs~~~L~~v~~~~~~PiLrKDFIid~-~QI~ea~~~G 94 (217)
T cd00331 20 ASPSKGLIREDFDPVEIAKAYEKAGAAAISV-LTEPKY---FQGSLEDLRAVREAVSLPVLRKDFIIDP-YQIYEARAAG 94 (217)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE-ECCCCC---CCCCHHHHHHHHHHCCCCEEECCCCCCH-HHHHHHHHCC
T ss_conf 9999885678899999999999779818999-557777---7988999999998479986742321769-9999999819
Q ss_pred CCEEEEECCCCC--CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECC-CCCCCCCCHHHHHHHHHH
Q ss_conf 607999706642--15899986776498259985233344789988620140289983067-765332201357789986
Q gi|254780975|r 86 CDIITFHPESSP--HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPG-FGGQQLIESTIPKIRQAK 162 (224)
Q Consensus 86 ~d~i~~H~E~~~--~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG-~~Gq~f~~~~l~kI~~l~ 162 (224)
||.|.+-+.... ++.++++.+++.|..+=+-++-..+++..... ..+ +.+||-. ..- |. -.+++-.++.
T Consensus 95 AdaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~--~a~---iIGINnRdL~t--~~-vd~~~~~~L~ 166 (217)
T cd00331 95 ADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALAL--GAK---IIGINNRDLKT--FE-VDLNTTERLA 166 (217)
T ss_pred CCCHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHC--CCC---EEEECCCCCHH--CE-ECHHHHHHHH
T ss_conf 9878798885499999999999999498279885899999999957--998---78421677123--03-4789999999
Q ss_pred HHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH
Q ss_conf 54313865269815899-889999996799899974266378998999999
Q gi|254780975|r 163 ALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKR 212 (224)
Q Consensus 163 ~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~ 212 (224)
+.+|. +..+-.-+||+ .+.+..+.++|+|.+..|+++.+++||.+..+.
T Consensus 167 ~~ip~-~~~~IsESGI~~~~di~~l~~~G~d~~LIG~sLm~~~~p~~~l~~ 216 (217)
T cd00331 167 PLIPK-DVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDPGAALRE 216 (217)
T ss_pred HHCCC-CCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH
T ss_conf 64898-988998279999999999998799999989788679998999960
No 112
>PRK08904 consensus
Probab=97.95 E-value=0.00087 Score=44.52 Aligned_cols=187 Identities=18% Similarity=0.231 Sum_probs=121.4
Q ss_pred EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf 881706325889999999999965998999973426345843417899998641-2564168567885120336764047
Q gi|254780975|r 6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINIIADA 84 (224)
Q Consensus 6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~~ 84 (224)
+|.|=+-..|..+-....+.+.++|+..+-+-.- ..-..+.++.+++ +++..+-+ =+---...++...++
T Consensus 11 ~iipVir~~~~~~a~~~a~al~~~Gi~~iEiTlr-------tp~a~~~i~~l~~~~p~~~vGa--GTVl~~e~~~~a~~a 81 (207)
T PRK08904 11 AVVPVMAIDDLSTAVDLSRALVEGGIPTLEITLR-------TPVGLDAIRLIAKEVPNAIVGA--GTVTNPEQLKAVEDA 81 (207)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC-------CCHHHHHHHHHHHHCCCCEEEE--EECCCHHHHHHHHHC
T ss_conf 9799997699999999999999879988999579-------9139999999998689876855--313689999999984
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECC--CCCCCCCCHHHHHHHH
Q ss_conf 760799970664215899986776498--259985233344789988620140289983067--7653322013577899
Q gi|254780975|r 85 GCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPG--FGGQQLIESTIPKIRQ 160 (224)
Q Consensus 85 g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG--~~Gq~f~~~~l~kI~~ 160 (224)
|++.+.-..= . .++++++++.|. -+|++ ||-|...-+-.-.+.|-+ -|+ .+|. ..+|.
T Consensus 82 GA~FiVSP~~--~--~~v~~~a~~~~i~~iPGv~----TpsEi~~A~~~G~~~vK~---FPA~~~GG~-------~~lka 143 (207)
T PRK08904 82 GAVFAISPGL--H--ESLAKAGHNSGIPLIPGVA----TPGEIQLALEHGIDTLKL---FPAEVVGGK-------AMLKA 143 (207)
T ss_pred CCCEEECCCC--C--HHHHHHHHHCCCCEECCCC----CHHHHHHHHHCCCCEEEE---CCCHHCCCH-------HHHHH
T ss_conf 9999984899--8--9999999983997657869----999999999879998997---762220889-------99998
Q ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHH-HHHHHHHHHHHHH
Q ss_conf 865431386526981589988999999679989997426637899899-9999999999786
Q gi|254780975|r 161 AKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEIS-YAKRLNDLKKSAL 221 (224)
Q Consensus 161 l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~-~~~~l~~l~~~a~ 221 (224)
++.-++ +++++.-||||.+|+.++.++|.-..|.||.+|..+-... -...|.+..+-+.
T Consensus 144 l~~pfp--~i~~~pTGGV~~~N~~~yl~~~~v~~vgGS~l~~~~~i~~~d~~~I~~~a~~a~ 203 (207)
T PRK08904 144 LYGPYA--DVRFCPTGGISLATAPEYLALPNVLCVGGSWLTPKEAVKNKDWDTITRLAKEAA 203 (207)
T ss_pred HHCCCC--CCEEEECCCCCHHHHHHHHHCCCEEEEECHHHCCHHHHHCCCHHHHHHHHHHHH
T ss_conf 746599--980886589898789999818984999881438999997489999999999997
No 113
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.93 E-value=8.4e-05 Score=51.01 Aligned_cols=39 Identities=23% Similarity=0.406 Sum_probs=23.0
Q ss_pred CCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf 86526981589-9889999996799899974266378998
Q gi|254780975|r 168 RSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGE 206 (224)
Q Consensus 168 ~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~ 206 (224)
..+++++-||| +.+.+..+.+.|||.++.||+.|.+++.
T Consensus 73 ~~ipi~vGGGIrs~e~~~~ll~~GadkViigs~a~~~p~~ 112 (232)
T TIGR03572 73 CFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALENPDL 112 (232)
T ss_pred CCCCEEEEECEEEHHHHHHHHHCCCCEEEECHHHHHCCHH
T ss_conf 2985899713303899999997699689934545219357
No 114
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.93 E-value=0.00076 Score=44.89 Aligned_cols=170 Identities=15% Similarity=0.226 Sum_probs=115.1
Q ss_pred EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf 881706325889999999999965998999973426345843417899998641-2564168567885120336764047
Q gi|254780975|r 6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINIIADA 84 (224)
Q Consensus 6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~~ 84 (224)
+|.|=+-..|..+..+..+.|.++|+..+-|-.- .....+.++.+++ +++..+=+= =|.+ ...++...++
T Consensus 16 ~iipVlr~~~~~~a~~~~~al~~gGi~~iEITlr-------t~~a~~~I~~l~~~~p~~~vGaG-TVl~-~e~~~~a~~a 86 (212)
T PRK06015 16 PVIPVLLIDDVEHAVPLARALARGGLPAIEITLR-------TPAALDAIRAVAAEVEEAIVGAG-TILN-AKQFEDAAKA 86 (212)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC-------CCCHHHHHHHHHHHCCCCEEEEE-ECCC-HHHHHHHHHC
T ss_conf 9799997799999999999999879988999689-------95199999999986999679542-1156-9999999984
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECC--CCCCCCCCHHHHHHHH
Q ss_conf 760799970664215899986776498--259985233344789988620140289983067--7653322013577899
Q gi|254780975|r 85 GCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPG--FGGQQLIESTIPKIRQ 160 (224)
Q Consensus 85 g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG--~~Gq~f~~~~l~kI~~ 160 (224)
|++.+.-..= + .++++++++.|. -+|. .||-|...-+-.-++.|-+ -|+ .+| .+.++.
T Consensus 87 GA~FiVSP~~--~--~~v~~~a~~~~i~~iPGv----~TpsEi~~A~~~G~~~vKl---FPA~~~gG-------~~~lka 148 (212)
T PRK06015 87 GSRFIVSPGT--T--QELLAAANDSDVPLLPGA----ITPSEVMALREEGYTVLKF---FPAEQAGG-------AAFLKA 148 (212)
T ss_pred CCCEEECCCC--C--HHHHHHHHHCCCCEECCC----CCHHHHHHHHHCCCCEEEE---CCCCCCCC-------HHHHHH
T ss_conf 9989985899--9--999999998399773786----9999999999879998997---84300168-------999999
Q ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 86543138652698158998899999967998999742663789
Q gi|254780975|r 161 AKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 161 l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
++.-++ +++++.-||||.+|+.++.+++.-..|.||.+|..+
T Consensus 149 l~~p~p--~~~~~ptGGV~~~N~~~yl~~~~v~~vgGs~l~~~~ 190 (212)
T PRK06015 149 LSSPLA--GTFFCPTGGISLKNARDYLSLPNVVCVGGSWVAPKE 190 (212)
T ss_pred HHCCCC--CCCEEECCCCCHHHHHHHHCCCCEEEEECHHHCCHH
T ss_conf 857799--998886289898889999808981999883538999
No 115
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.92 E-value=0.00076 Score=44.87 Aligned_cols=193 Identities=19% Similarity=0.293 Sum_probs=131.0
Q ss_pred EECHHH--HCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCC
Q ss_conf 881706--325889999999999965998999973426345843417899998641256416856788512033676404
Q gi|254780975|r 6 QIVPSI--LAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIAD 83 (224)
Q Consensus 6 ~IspSi--l~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~ 83 (224)
+-|||- +..|+... +..+..+++|+.-+-+ ..|.+| |.=+++.++.+|..+.+|+=++=-+-+| ..+..-..
T Consensus 54 kaSPS~G~ir~d~dp~-~ia~~Ye~~GAa~iSV-LTd~~~---F~Gs~e~L~~v~~~v~~PvL~KDFiiD~-yQI~~Ar~ 127 (254)
T COG0134 54 KASPSKGLIREDFDPV-EIAKAYEEGGAAAISV-LTDPKY---FQGSFEDLRAVRAAVDLPVLRKDFIIDP-YQIYEARA 127 (254)
T ss_pred CCCCCCCCCCCCCCHH-HHHHHHHHHCCEEEEE-ECCCCC---CCCCHHHHHHHHHHCCCCEEECCCCCCH-HHHHHHHH
T ss_conf 5799877555559999-9999999739848999-637664---6987899999998558982644677889-99999998
Q ss_pred CCCCEEEEECCCCCC--HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEE-CCCCCCCCCCHHHHHHHH
Q ss_conf 776079997066421--58999867764982599852333447899886201402899830-677653322013577899
Q gi|254780975|r 84 AGCDIITFHPESSPH--IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVN-PGFGGQQLIESTIPKIRQ 160 (224)
Q Consensus 84 ~g~d~i~~H~E~~~~--~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~-PG~~Gq~f~~~~l~kI~~ 160 (224)
+|+|.|-+-....++ +.+.....+++|+.+=+-++-. ++++.-+. .+.-+ .+|| -....-.-. ++.-.+
T Consensus 128 ~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~---eEl~rAl~-~ga~i-IGINnRdL~tf~vd---l~~t~~ 199 (254)
T COG0134 128 AGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNE---EELERALK-LGAKI-IGINNRDLTTLEVD---LETTEK 199 (254)
T ss_pred CCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCH---HHHHHHHH-CCCCE-EEEECCCCCHHEEC---HHHHHH
T ss_conf 085619999996399999999999997699238997899---99999996-79988-99837884021006---889999
Q ss_pred HHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf 8654313865269815899-8899999967998999742663789989999999
Q gi|254780975|r 161 AKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL 213 (224)
Q Consensus 161 l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l 213 (224)
+..+.++ +..+-.-.||+ .+.+..+..+|+|-+-+|+++-+++|+.++.+.+
T Consensus 200 la~~~p~-~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~l 252 (254)
T COG0134 200 LAPLIPK-DVILISESGISTPEDVRRLAKAGADAFLVGEALMRADDPEEALREL 252 (254)
T ss_pred HHHHCCC-CCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
T ss_conf 8844877-7589961798999999999974899899638885699989999986
No 116
>PRK02747 consensus
Probab=97.92 E-value=9.2e-05 Score=50.75 Aligned_cols=41 Identities=32% Similarity=0.458 Sum_probs=27.2
Q ss_pred CCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHH
Q ss_conf 386526981589-98899999967998999742663789989
Q gi|254780975|r 167 KRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGEI 207 (224)
Q Consensus 167 ~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~~ 207 (224)
+..+++++-||| +.+.+..+.++|||.++.||+.+++++..
T Consensus 72 ~~~ipi~vGGGIrs~e~~~~ll~~GadkViigs~a~~np~l~ 113 (257)
T PRK02747 72 QCFMPLTVGGGVRTVDDIRKLLLAGADKVSINSAAVARPEFV 113 (257)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHCCHHH
T ss_conf 669988984882073887899876996898344465483477
No 117
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.91 E-value=1e-04 Score=50.53 Aligned_cols=69 Identities=22% Similarity=0.406 Sum_probs=36.6
Q ss_pred CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHCCCCHH
Q ss_conf 140289983067765332201357789986543138652698158998-899999967998999742663789989
Q gi|254780975|r 133 IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFNQKGEI 207 (224)
Q Consensus 133 ~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~~~d~~ 207 (224)
+|++.+.-.+.-+.|.+.+-+.++++.+ +..+++++=|||+. +.+..+.+.|||.+|.||+.|++++..
T Consensus 45 ad~lhlvDld~a~~~~~~n~~~I~~i~~------~~~vpiqvGGGIrs~e~~~~ll~~GadkViigS~a~~np~~i 114 (252)
T PRK13597 45 ADELVFLDISATHEERAILLDVVARVAE------RVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELI 114 (252)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHH------HCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHCCHHH
T ss_conf 9999999564666686637999999986------269828984771308999999856987798326667493789
No 118
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.89 E-value=0.00012 Score=49.98 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=27.6
Q ss_pred CCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHH
Q ss_conf 386526981589-98899999967998999742663789989
Q gi|254780975|r 167 KRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGEI 207 (224)
Q Consensus 167 ~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~~ 207 (224)
+..+++++=||| +.+.+..+.++|||.++.||+.|.+++..
T Consensus 72 ~~~ipi~vGGGIrs~e~~~~ll~~GadkViigs~a~~~p~~i 113 (253)
T PRK01033 72 ECFMPLCYGGGIKTVEQAKRIFSLGVEKVSISTAALEDPKLI 113 (253)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHCCHHH
T ss_conf 769988986881216888999867986699998786374165
No 119
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=97.89 E-value=0.0015 Score=43.01 Aligned_cols=175 Identities=23% Similarity=0.301 Sum_probs=109.7
Q ss_pred HHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEE---------EEEECCHHHHHHCCCCCCEEEEECC
Q ss_conf 9999659989999734263458434178999986412564168567---------8851203367640477607999706
Q gi|254780975|r 24 SNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHL---------MISSIDSHINIIADAGCDIITFHPE 94 (224)
Q Consensus 24 ~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHL---------Mv~~P~~~i~~~~~~g~d~i~~H~E 94 (224)
....++|+--+-+- |.+.++.+|+.+++|+===. .+..-.+-++.+.++|++.|.+-+-
T Consensus 40 ~Aa~~gGAvgiR~~------------gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT 107 (229)
T COG3010 40 LAAEQGGAVGIRIE------------GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDAT 107 (229)
T ss_pred HHHHHCCCCEEEEC------------CHHHHHHHHHHCCCCEEEEEECCCCCCCCEECCCHHHHHHHHHCCCCEEEEECC
T ss_conf 99985786268612------------065699998617887688880589999935566189999999779909996255
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEEECCC--CHHHHHHHHHHCCEEEEEEEE-CCCCC--CCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 642158999867764982599852333--447899886201402899830-67765--3322013577899865431386
Q gi|254780975|r 95 SSPHIRRSLRTIHAMGKKTGVAINPET--PVAILEDVIDEIDMILIMTVN-PGFGG--QQLIESTIPKIRQAKALIGKRS 169 (224)
Q Consensus 95 ~~~~~~~~i~~i~~~g~k~Giai~p~T--~~~~i~~~l~~~D~vliM~V~-PG~~G--q~f~~~~l~kI~~l~~~~~~~~ 169 (224)
.-+.+...++.+-+.-..+|.-+-.+. .-|.+.-.---+|+| +.+ -||.+ ..-.+.-+.-++++.+ .+
T Consensus 108 ~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~I---GTTLsGYT~~~~~~~~pDf~lvk~l~~----~~ 180 (229)
T COG3010 108 DRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDII---GTTLSGYTGYTEKPTEPDFQLVKQLSD----AG 180 (229)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEE---ECCCCCCCCCCCCCCCCCHHHHHHHHH----CC
T ss_conf 68798435999999733579478732598888888997399678---224201468998778972899999986----79
Q ss_pred CEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 5269815899-88999999679989997426637899899999999999978
Q gi|254780975|r 170 ISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSA 220 (224)
Q Consensus 170 ~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~~a 220 (224)
..+...|.+| .+.+++..+.||+.+|+||||- .|....+++.+..|++
T Consensus 181 ~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAIT---Rp~~It~~F~~~ik~~ 229 (229)
T COG3010 181 CRVIAEGRYNTPEQAKKAIEIGADAVVVGSAIT---RPEEITQWFVDAIKSA 229 (229)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCEEEEECCCCC---CHHHHHHHHHHHHHCC
T ss_conf 939951787999999999971880899874337---8799999999998429
No 120
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.89 E-value=0.00061 Score=45.52 Aligned_cols=160 Identities=16% Similarity=0.302 Sum_probs=99.6
Q ss_pred HHHHHH---HCCCCEEEEEEEEEECCHHH---HHHCCCCCCEEEEECCC-------------CCCHHHHHHHHHHCCCEE
Q ss_conf 999864---12564168567885120336---76404776079997066-------------421589998677649825
Q gi|254780975|r 53 VIRSLR---SYSDSVFDCHLMISSIDSHI---NIIADAGCDIITFHPES-------------SPHIRRSLRTIHAMGKKT 113 (224)
Q Consensus 53 ~i~~i~---~~t~~~~dvHLMv~~P~~~i---~~~~~~g~d~i~~H~E~-------------~~~~~~~i~~i~~~g~k~ 113 (224)
.++.++ +..+.|+=+-+...+|+.|. +.+.++|+|++.+-.-+ .+.+.++++.+|+.-.++
T Consensus 77 ~~~~l~~~~~~~~~pvi~si~~~~~~d~~~~~~~~~~~gad~ielNiScPNt~~~g~~~~~~~~~~~~i~~~vk~~~~~P 156 (296)
T cd04740 77 FLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVP 156 (296)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99878986356897189981689878999999998864898899978899867636775749999999999998604896
Q ss_pred -EEEEECCC-CHHHHHHHHHH--CCEEEEE-E-----E-----E-------CCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf -99852333-44789988620--1402899-8-----3-----0-------67765332201357789986543138652
Q gi|254780975|r 114 -GVAINPET-PVAILEDVIDE--IDMILIM-T-----V-----N-------PGFGGQQLIESTIPKIRQAKALIGKRSIS 171 (224)
Q Consensus 114 -Giai~p~T-~~~~i~~~l~~--~D~vliM-~-----V-----~-------PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~ 171 (224)
.+=|.|+. ++..+...+.. +|.|.+- | + . -|.||.+..+.++..|+++++.. ++.
T Consensus 157 i~vKlsP~~~~i~~ia~~~~~~g~dgiv~~NT~~~~~id~~~~~p~l~~~~GGlSG~~l~~~al~~v~~~~~~~---~ip 233 (296)
T cd04740 157 VIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV---EIP 233 (296)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC---CCC
T ss_conf 69971898000999999999769988999746787663644467552455787686778899999999998545---888
Q ss_pred EEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
Q ss_conf 6981589-988999999679989997426637899899999999999
Q gi|254780975|r 172 LEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLK 217 (224)
Q Consensus 172 I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~ 217 (224)
|.-=||| +.+.+.+...+||+.+=++|++|..++. ..+-+++|.
T Consensus 234 Iig~GGI~s~~da~e~i~aGAs~VQi~Tai~~Gp~~--i~~i~~~L~ 278 (296)
T cd04740 234 IIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEA--FKEIIEGLE 278 (296)
T ss_pred EEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCHHH--HHHHHHHHH
T ss_conf 797579799999999998399888723667429279--999999999
No 121
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.89 E-value=0.00011 Score=50.15 Aligned_cols=36 Identities=25% Similarity=0.585 Sum_probs=17.1
Q ss_pred CEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 52698158998-8999999679989997426637899
Q gi|254780975|r 170 ISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 170 ~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
.+++++|||+. +.+..+.++||+.+|.||..+.+++
T Consensus 76 ~pi~vGGGIrs~~~i~~~l~~Ga~kvvigs~~~~~~~ 112 (240)
T PRK13585 76 VSIQLGGGIRSVEDAASLLDLGVDRVILGTAAIENPE 112 (240)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHCCH
T ss_conf 7789978858799999999769989993981131842
No 122
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.88 E-value=0.0002 Score=48.63 Aligned_cols=104 Identities=24% Similarity=0.440 Sum_probs=69.8
Q ss_pred CEEEE---ECCCCCCHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 07999---70664215899986776498-25998523334478998862-014028998306776533220135778998
Q gi|254780975|r 87 DIITF---HPESSPHIRRSLRTIHAMGK-KTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQA 161 (224)
Q Consensus 87 d~i~~---H~E~~~~~~~~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l 161 (224)
|.|-+ |......+.+.++.+|+... ..-+.+-.+| ++.+...++ .+|.||+= .|.| +.+++.
T Consensus 153 d~iLikdNHi~~~g~i~~av~~~r~~~~~~~~IeVEv~s-~~e~~~a~~~gadiI~LD---------n~sp---e~~~~~ 219 (268)
T cd01572 153 DAVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVET-LEQLKEALEAGADIIMLD---------NMSP---EELREA 219 (268)
T ss_pred CEEEEEHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECC-HHHHHHHHHCCCCEEEEC---------CCCH---HHHHHH
T ss_conf 348882427876378999999999867998529999488-999999997599999977---------9999---999999
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 6543138652698158998899999967998999742663789
Q gi|254780975|r 162 KALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 162 ~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
.+++++ ++.+++-||||.+|+..+.+.|+|.++.|+-..+.+
T Consensus 220 v~~~~~-~v~ieaSGgIn~~ni~~ya~~GvD~Is~g~lt~~~~ 261 (268)
T cd01572 220 VALLKG-RVLLEASGGITLENIRAYAETGVDYISVGALTHSAP 261 (268)
T ss_pred HHHHCC-CEEEEEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf 998669-569999899989999999975999998385436995
No 123
>PRK05211 consensus
Probab=97.86 E-value=0.00018 Score=48.91 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=17.7
Q ss_pred CCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf 65269815899-889999996799899974266378998
Q gi|254780975|r 169 SISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGE 206 (224)
Q Consensus 169 ~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~ 206 (224)
..++++=|||+ .+.+..+.++|||.++.||+.+++|+.
T Consensus 65 ~~Pl~vGGGIrs~~~i~~ll~~GadkViigs~a~~np~l 103 (248)
T PRK05211 65 DIPFCVAGGIKSVEDAREILSFGADKISINSPALADPTL 103 (248)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHCCHH
T ss_conf 985896278013899999998799889989767619618
No 124
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.86 E-value=0.00084 Score=44.60 Aligned_cols=151 Identities=19% Similarity=0.244 Sum_probs=86.3
Q ss_pred HHHHHHHCCCCEEEEEEEEEECCHH---HHHHCCCCCCEEEEECCC---CC---------CHHHHHHHHHHCC-CEEEEE
Q ss_conf 9998641256416856788512033---676404776079997066---42---------1589998677649-825998
Q gi|254780975|r 53 VIRSLRSYSDSVFDCHLMISSIDSH---INIIADAGCDIITFHPES---SP---------HIRRSLRTIHAMG-KKTGVA 116 (224)
Q Consensus 53 ~i~~i~~~t~~~~dvHLMv~~P~~~---i~~~~~~g~d~i~~H~E~---~~---------~~~~~i~~i~~~g-~k~Gia 116 (224)
.++..++..+.|+=+-++...++.| .+.+.++|+|.+-+-.-+ .. ...++++.+|+.- .-+.+=
T Consensus 90 ~i~~~~~~~~~pvI~Si~g~s~ee~~~~a~~~~~~gad~lElNls~~~~~~~~~~~~~~~~~~~iv~~Vk~~~~~Pv~vK 169 (325)
T cd04739 90 LIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVK 169 (325)
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99998753598759871689989999999999764998799965667888554421068899999999986078866995
Q ss_pred EECCC-CHHHHHHHHHH--CCEEEEE------E-------EE--CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 52333-44789988620--1402899------8-------30--677653322013577899865431386526981589
Q gi|254780975|r 117 INPET-PVAILEDVIDE--IDMILIM------T-------VN--PGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV 178 (224)
Q Consensus 117 i~p~T-~~~~i~~~l~~--~D~vliM------~-------V~--PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv 178 (224)
|.|+. .+..+..-+.. +|.|.+- . .. .+++|....+-.+.-|.++++ +.++.|.-=|||
T Consensus 170 LsP~~~di~~ia~aa~~~GAdgi~liNT~~~~~id~~~~~~~~~~~lSg~~~~~~alr~v~~~~~---~~~ipIiG~GGI 246 (325)
T cd04739 170 LSPFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSG---RVKASLAASGGV 246 (325)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHC---CCCCCEEEECCC
T ss_conf 39983009999999997599889973576656421676415368774575300688999999964---689898888895
Q ss_pred C-HHHHHHHHHCCCCEEEECHHHHCC-CCH
Q ss_conf 9-889999996799899974266378-998
Q gi|254780975|r 179 T-SRNIKSLVQAGADLLVVGSSFFNQ-KGE 206 (224)
Q Consensus 179 n-~~~i~~l~~~Gad~~V~Gsaif~~-~d~ 206 (224)
. .+.+-+..-+||+.+=+||+++.. ++.
T Consensus 247 ~s~~Da~e~ilAGAsaVQv~TA~~~~G~~i 276 (325)
T cd04739 247 HDAEDVVKYLLAGADVVMTTSALLRHGPDY 276 (325)
T ss_pred CCHHHHHHHHHCCCCHHHEEHHHHHHCCHH
T ss_conf 989999999980988761432346418379
No 125
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.86 E-value=0.002 Score=42.19 Aligned_cols=184 Identities=18% Similarity=0.200 Sum_probs=118.6
Q ss_pred EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHC-CCCEEEEEEEE--EECCHHHHHHC
Q ss_conf 8817063258899999999999659989999734263458434178999986412-56416856788--51203367640
Q gi|254780975|r 6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY-SDSVFDCHLMI--SSIDSHINIIA 82 (224)
Q Consensus 6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv--~~P~~~i~~~~ 82 (224)
+|.|=+-..|..+...-.+.|.++|+..+-|-.- .--..+.++.+++. .+.| |+.+=+ ---...++...
T Consensus 14 ~iiaVlr~~~~~~a~~~~~al~~gGi~~iEITl~-------tp~a~~~i~~l~~~~~~~p-~~~iGaGTV~~~e~~~~a~ 85 (209)
T PRK06552 14 GLVAVVRGESKEEALKISLAVIKGGIKAIEVTYT-------NPFASEVIKELVERYKDDP-EVLIGAGTVLDAVTARQAI 85 (209)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC-------CCCHHHHHHHHHHHHCCCC-CEEEEEECCCCHHHHHHHH
T ss_conf 9799997289999999999999879988999678-------9759999999999817799-8189887274899999999
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCCE--EEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 477607999706642158999867764982--599852333447899886201402899830677653322013577899
Q gi|254780975|r 83 DAGCDIITFHPESSPHIRRSLRTIHAMGKK--TGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQ 160 (224)
Q Consensus 83 ~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k--~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~ 160 (224)
++|++.+.-.. .+ .+++++++++|.- +|. .||-|...-+-.-++.|-+ =|+... -.+-++.
T Consensus 86 ~aGA~FiVSP~--~~--~~v~~~a~~~~i~~iPG~----~TpsEi~~A~~~Ga~~vKl---FPA~~~------G~~yika 148 (209)
T PRK06552 86 LAGAQFIVSPS--FN--RETAKICNRYQIPYLPGC----MTVTEIVTALEAGVDIVKL---FPGSTV------GPSFISA 148 (209)
T ss_pred HCCCCEEECCC--CC--HHHHHHHHHCCCCEECCC----CCHHHHHHHHHCCCCEEEE---CCHHHC------CHHHHHH
T ss_conf 85998897699--98--999999998599641797----9999999999869995885---833324------8999999
Q ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 865431386526981589988999999679989997426637899899999999999978
Q gi|254780975|r 161 AKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSA 220 (224)
Q Consensus 161 l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~~a 220 (224)
++.-++ ++++..=||||.+|+.++.++|+..+-+||.+++. . ....+.++.+.|
T Consensus 149 l~~p~p--~~~~~ptGGV~~~N~~~~l~aG~~~vgvGs~l~~~---~-~~~d~~~I~~~A 202 (209)
T PRK06552 149 IKGPLP--QVNIMVTGGVSLDNVKDWFAAGADAVGIGGELNKL---A-SQGDYDLITEKA 202 (209)
T ss_pred HHCCCC--CCCEEECCCCCHHHHHHHHHCCCCEEEECHHHCCC---H-HCCCHHHHHHHH
T ss_conf 866489--99288638999888999998799889986577082---5-418999999999
No 126
>PRK04281 consensus
Probab=97.86 E-value=0.00012 Score=50.02 Aligned_cols=40 Identities=33% Similarity=0.489 Sum_probs=23.7
Q ss_pred CCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf 386526981589-9889999996799899974266378998
Q gi|254780975|r 167 KRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGE 206 (224)
Q Consensus 167 ~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~ 206 (224)
+..+++++-||| +.+.+..+.++|||.++.||+.|++++.
T Consensus 72 ~~~vpi~vGGGIrs~e~~~~ll~~GadkViigs~a~~np~~ 112 (254)
T PRK04281 72 QVFIPLTVGGGVRTVADIRRLLNAGADKVSINTAAVTRPDL 112 (254)
T ss_pred HCCCCEEEECCEEECHHHHHHHHCCCCEEEECHHHHHCCHH
T ss_conf 07962899777545188999997699889977767649267
No 127
>PRK03220 consensus
Probab=97.86 E-value=0.00013 Score=49.78 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECH
Q ss_conf 344789988620-14028998306776533220135778998654313865269815899-8899999967998999742
Q gi|254780975|r 121 TPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGS 198 (224)
Q Consensus 121 T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gs 198 (224)
.|++..+.|-+. +|++.+.-.+.-+.|++-+-+.++++.+ +..+++++-|||+ .+++..+.++|||.+|.||
T Consensus 32 dP~~~a~~~~~~G~d~lhivDld~a~~g~~~n~~~I~~i~~------~~~~pi~vGGGIrs~e~~~~ll~~GadkVvigs 105 (257)
T PRK03220 32 DPVELAAVYDAEGADELTFLDVTASSSGRATMLDVVRRTAE------QVFIPLTVGGGVRTVEDVDSLLRAGADKVSVNT 105 (257)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH------CCCCCEEEECCCCCHHHHHHHHHCCCCEEECHH
T ss_conf 99999999998699989999088875676307999999985------069648984785879999999981975087206
Q ss_pred HHHCCCCHH
Q ss_conf 663789989
Q gi|254780975|r 199 SFFNQKGEI 207 (224)
Q Consensus 199 aif~~~d~~ 207 (224)
+.|.+++..
T Consensus 106 ~a~~~p~~~ 114 (257)
T PRK03220 106 AAIARPELL 114 (257)
T ss_pred HHHHCCHHH
T ss_conf 677594777
No 128
>PRK02145 consensus
Probab=97.85 E-value=0.00013 Score=49.79 Aligned_cols=81 Identities=26% Similarity=0.405 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECH
Q ss_conf 344789988620-14028998306776533220135778998654313865269815899-8899999967998999742
Q gi|254780975|r 121 TPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGS 198 (224)
Q Consensus 121 T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gs 198 (224)
-|++..+.|-.. +|++.+.-.+..+.|.+.+-..++++. + +..+++++-|||+ .+.+..+.++|||.++.||
T Consensus 32 dP~~~a~~~~~~GadelhivDld~a~~~~~~~~~~I~~i~---~---~~~iPi~vGGGIrs~e~~~~ll~~GadkVii~s 105 (257)
T PRK02145 32 DPVEIARRYDEQGADELTFLDITATSDGRDLILPIIEAVA---S---QVFIPLTVGGGVRAVEDVRRLLNAGADKVSMNS 105 (257)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHH---H---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEHH
T ss_conf 9999999999879998999978887667540899999999---6---568748962773046889999981998898415
Q ss_pred HHHCCCCHH
Q ss_conf 663789989
Q gi|254780975|r 199 SFFNQKGEI 207 (224)
Q Consensus 199 aif~~~d~~ 207 (224)
+.+++++..
T Consensus 106 ~a~~np~~v 114 (257)
T PRK02145 106 SAVANPQLV 114 (257)
T ss_pred HHHHCCCHH
T ss_conf 566593022
No 129
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.85 E-value=0.00015 Score=49.44 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=21.0
Q ss_pred EEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf 97342634584341789999864125641685678851203367640477607999
Q gi|254780975|r 36 FDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITF 91 (224)
Q Consensus 36 iDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~ 91 (224)
+|+.||..|...-| .-+..+-+|...++.|.+.|+|.+.+
T Consensus 10 idi~~g~~Vk~~~~----------------~~~~~~gdP~~~a~~~~~~gadel~i 49 (253)
T PRK02083 10 LDVKDGRVVKGVNF----------------VNLRDAGDPVELAKRYDEEGADELVF 49 (253)
T ss_pred EEEECCEEEECCCC----------------CCCEECCCHHHHHHHHHHCCCCEEEE
T ss_conf 99999999978776----------------45268889999999999879998999
No 130
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=97.84 E-value=0.00015 Score=49.43 Aligned_cols=35 Identities=29% Similarity=0.627 Sum_probs=16.0
Q ss_pred CEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 526981589-98899999967998999742663789
Q gi|254780975|r 170 ISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 170 ~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
.+++++||| +.+.+..+.+.||+.+|.||..+.++
T Consensus 74 ~pi~vgGGIrs~e~~~~~l~~Ga~kvvigs~~~~~~ 109 (229)
T pfam00977 74 IPVQVGGGIRSLEDAERLLSAGADKVIIGTAAVKNP 109 (229)
T ss_pred CCEEEECCEEEHHHHHHHHHCCCCEEEECCCHHHCH
T ss_conf 878996456118999999976998999586043093
No 131
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=97.84 E-value=0.0017 Score=42.67 Aligned_cols=142 Identities=18% Similarity=0.311 Sum_probs=105.5
Q ss_pred HHHHHHHHCCCCEEEEEEEEEECC--HHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH
Q ss_conf 999986412564168567885120--336764047760799970664215899986776498259985233344789988
Q gi|254780975|r 52 DVIRSLRSYSDSVFDCHLMISSID--SHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDV 129 (224)
Q Consensus 52 ~~i~~i~~~t~~~~dvHLMv~~P~--~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~ 129 (224)
+.++++++.|+.|+-|.+|+-.|. .+++.+.+.++..+.++.- ++.+.+..+++.|.++.... +++..-...
T Consensus 52 ~~i~~~~~~td~P~gvnl~~~~~~~~~~~~~~~e~~v~vv~~~~G---~p~~~~~~~~~~g~~v~~~v---~s~~~A~~a 125 (307)
T TIGR03151 52 KEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAG---NPGKYIPRLKENGVKVIPVV---ASVALAKRM 125 (307)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEECCC---CCHHHHHHHHHCCCEEEEEE---CCHHHHHHH
T ss_conf 999999985279860433323888999999998608982472799---96899999998599799981---899999999
Q ss_pred HH-HCCEEEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 62-014028998306776-53322013577899865431386526981589-988999999679989997426637899
Q gi|254780975|r 130 ID-EIDMILIMTVNPGFG-GQQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 130 l~-~~D~vliM~V~PG~~-Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
.. -+|.|.+-+.+-|-- |+ -.++.-+.++++. -++.+-..||| +-.-+......||+-+..||...-.++
T Consensus 126 ~~~G~D~iV~qG~EAGGH~G~---~~~~~Lvp~v~d~---~~iPViAAGGI~dgr~iaaalalGA~gV~mGTrFlat~E 198 (307)
T TIGR03151 126 EKAGADAVIAEGMESGGHIGE---LTTMALVPQVVDA---VSIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKE 198 (307)
T ss_pred HHCCCCEEEEECCCCCCCCCC---CCHHHHHHHHHHH---CCCCEEEECCCCCCHHHHHHHHCCCCEEEECHHHHCCCC
T ss_conf 964999999745544687786---4378779999850---468657641133658899999718847874419771856
No 132
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway . TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=97.83 E-value=0.0032 Score=40.87 Aligned_cols=199 Identities=17% Similarity=0.198 Sum_probs=131.4
Q ss_pred CHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCC---HHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf 1706325889999999999965998999973426345843417---8999986412564168567885120336764047
Q gi|254780975|r 8 VPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG---ADVIRSLRSYSDSVFDCHLMISSIDSHINIIADA 84 (224)
Q Consensus 8 spSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~---~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ 84 (224)
+++=+..+..++-+.++...++|++.+++=.=+...-..++=. .+.-+.+|+.+ -.-+|-|-|+| .++--...
T Consensus 6 t~~~~~~~~~~~~~~ve~Al~GGV~~~QlR~K~~~~~~~yGE~~~~~~~A~~l~~lc-~~y~~~f~vND---~vdlA~~~ 81 (210)
T TIGR00693 6 TDPQLFPDLKDLLARVEAALKGGVTLVQLRDKGSNALQQYGETRERLELAEKLRELC-RKYGVPFIVND---RVDLALAL 81 (210)
T ss_pred ECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEECC---HHHHHHHH
T ss_conf 087467753448999999985896299984058754212585889999999999999-87089768828---39999983
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHH--HHHHCCEEEEEEEECCCCCCCC-CCHHHHHHHHH
Q ss_conf 76079997066421589998677649825998523334478998--8620140289983067765332-20135778998
Q gi|254780975|r 85 GCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILED--VIDEIDMILIMTVNPGFGGQQL-IESTIPKIRQA 161 (224)
Q Consensus 85 g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~--~l~~~D~vliM~V~PG~~Gq~f-~~~~l~kI~~l 161 (224)
|||=| |.--.+-+-.....+--..+..|++.+-.-.+..... .-+-+|||=+=.+-|=-+=+.- -+-.++-++++
T Consensus 82 ~ADGv--HlGQ~D~p~~~aR~l~G~~~iiG~S~~~~~e~~~a~~C~~~~gaDY~G~Gp~fpT~TK~~~~~~~g~e~l~~~ 159 (210)
T TIGR00693 82 GADGV--HLGQDDLPVSEARKLLGPDKIIGVSTHNLEELAEAAACELKEGADYIGVGPIFPTPTKKDAAPPVGLELLREI 159 (210)
T ss_pred CCCEE--EECCCCCCHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 79877--6678889989999853899579853379899999998764078988886371158878898776488899999
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf 6543138652698158998899999967998999742663789989999999
Q gi|254780975|r 162 KALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL 213 (224)
Q Consensus 162 ~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l 213 (224)
++... +.+++-.=|||+.+|++++..+|+|.+.+=|+|+.++|+..+.++|
T Consensus 160 ~~~~~-h~~P~VAIGGI~~~n~~~v~~~G~~~vAVvSaI~~A~d~~~a~~~l 210 (210)
T TIGR00693 160 AATSI-HDIPIVAIGGITLENVAEVLAAGADGVAVVSAIMQAADPKAAAKEL 210 (210)
T ss_pred HHHCC-CCCCEEEECCCCHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHC
T ss_conf 98617-8876588759887899999972887388865101572289999719
No 133
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=97.83 E-value=0.00056 Score=45.74 Aligned_cols=197 Identities=21% Similarity=0.299 Sum_probs=109.4
Q ss_pred HHCCCHHHHHHHHHHHHHCC--CCEEEEEEECCEECCCCC-CCHHHHHHHHHCC-CCEEEEEEE--EEECCHHHHHHCCC
Q ss_conf 63258899999999999659--989999734263458434-1789999864125-641685678--85120336764047
Q gi|254780975|r 11 ILAADFSRLGEEISNITKAG--AKQIHFDVMDGCFVPNIS-FGADVIRSLRSYS-DSVFDCHLM--ISSIDSHINIIADA 84 (224)
Q Consensus 11 il~~d~~~l~~~i~~l~~~~--~d~iHiDImDg~fvpn~~-~~~~~i~~i~~~t-~~~~dvHLM--v~~P~~~i~~~~~~ 84 (224)
+.+.|+...++.++.+++.+ ++++-+ .-|.++ +|+++++++++.. ...+|.-+- =+.-..+.+.+.+.
T Consensus 15 ivaLD~~~~~~~~~~~~~~~~~~~~~Kv------g~~l~~~~g~~~~~el~~~~~~VflDlK~~DIpnT~~~~~~~~~~~ 88 (240)
T COG0284 15 IVALDVPTEEEALAFVDKLGPTVDFVKV------GKPLVAFFGADILEELKARGKKVFLDLKLADIPNTVALAAKAAADL 88 (240)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEE------CHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 9997899779999999971020318997------6588985138999999970773587410056367999999986543
Q ss_pred CCCEEEEECCCCCC-HHHHHHHHHHCC-CEEEEEEECCCCHHHHHH---HHHHCCEEEEEE---EECCCCCCCCCCHHHH
Q ss_conf 76079997066421-589998677649-825998523334478998---862014028998---3067765332201357
Q gi|254780975|r 85 GCDIITFHPESSPH-IRRSLRTIHAMG-KKTGVAINPETPVAILED---VIDEIDMILIMT---VNPGFGGQQLIESTIP 156 (224)
Q Consensus 85 g~d~i~~H~E~~~~-~~~~i~~i~~~g-~k~Giai~p~T~~~~i~~---~l~~~D~vliM~---V~PG~~Gq~f~~~~l~ 156 (224)
|+|++++|.-.-.+ +....+...+.+ .-.+++.++++.-..+.. ..+--+.|+-++ -..|..|-.-.+.-.
T Consensus 89 g~d~vtvH~~~G~~~~~~~~e~~~~~~~~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~~~e~- 167 (240)
T COG0284 89 GADAVTVHAFGGFDMLRAAKEALEAGGPFVLAVTSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCSAEEV- 167 (240)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHH-
T ss_conf 7848997076788799999998864386699999579801666654122420899999999872437835787288888-
Q ss_pred HHHHHHHHHHCCCCE-----EEE--ECCCCHH--HHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
Q ss_conf 789986543138652-----698--1589988--999999679989997426637899899999999999
Q gi|254780975|r 157 KIRQAKALIGKRSIS-----LEV--DGGVTSR--NIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLK 217 (224)
Q Consensus 157 kI~~l~~~~~~~~~~-----I~v--DGGvn~~--~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~ 217 (224)
+++|+..+ .++. |.. +||=-.. |......+|+|.+|+|..|+.++||.+.++.+....
T Consensus 168 --~~ir~~~g-~~~~iltPGIg~~~~~gdQ~~~~t~~~A~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~ 234 (240)
T COG0284 168 --AAIREILG-PDFLILTPGIGAGSQGGDQGRVMTPGEAVRAGADYIVVGRPITQAGDPVAAARAIAREI 234 (240)
T ss_pred --HHHHHHCC-CCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
T ss_conf --89998538-89679888727676777833444989997558978997712323898699999999999
No 134
>PRK00830 consensus
Probab=97.82 E-value=9.9e-05 Score=50.54 Aligned_cols=82 Identities=22% Similarity=0.421 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEEC
Q ss_conf 3344789988620-140289983067765332201357789986543138652698158998-89999996799899974
Q gi|254780975|r 120 ETPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVG 197 (224)
Q Consensus 120 ~T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~G 197 (224)
+-|++..+.|-+. +|.+.+.-.+.-+.|++-+-+.+++|. + +-..+|++=|||+. +.+..+.++|||.+|.|
T Consensus 34 gdP~~~ak~~~~~gadelhivDld~a~~g~~~~~~~I~~i~---~---~~~~pi~vGGGIrs~e~~~~ll~~GadkVvIg 107 (273)
T PRK00830 34 GDPVELAKRYYEDGADELVFLDITASHEGRATMIDVIERTA---E---EVFIPLTVGGGIRSIEDIRQILRAGADKVSVN 107 (273)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHH---H---HCCCCEEEECCEEECCCHHHHHHCCCCEEECH
T ss_conf 89999999999879998999953246468842799999999---8---66995896088437732899997698639837
Q ss_pred HHHHCCCCHH
Q ss_conf 2663789989
Q gi|254780975|r 198 SSFFNQKGEI 207 (224)
Q Consensus 198 saif~~~d~~ 207 (224)
|+.+++++..
T Consensus 108 S~a~~np~~v 117 (273)
T PRK00830 108 TAAVKNPEFI 117 (273)
T ss_pred HHHHHCCHHH
T ss_conf 9898590778
No 135
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=97.82 E-value=0.0027 Score=41.39 Aligned_cols=125 Identities=23% Similarity=0.356 Sum_probs=82.7
Q ss_pred CHHHHHHCCCCCCEEEEECCCC--CCHHHHHHHHHHCCCEEE-EEEECCCCHHHHHHHHHH-CCEEEEEEEECCC-----
Q ss_conf 0336764047760799970664--215899986776498259-985233344789988620-1402899830677-----
Q gi|254780975|r 75 DSHINIIADAGCDIITFHPESS--PHIRRSLRTIHAMGKKTG-VAINPETPVAILEDVIDE-IDMILIMTVNPGF----- 145 (224)
Q Consensus 75 ~~~i~~~~~~g~d~i~~H~E~~--~~~~~~i~~i~~~g~k~G-iai~p~T~~~~i~~~l~~-~D~vliM~V~PG~----- 145 (224)
..-.+.+.++|+|.+++-..+. ....+.++++|+.--.+- ++=|-.|. +....++.. +|.|.+ ++-||-
T Consensus 230 ~eRa~~Lv~AGvDvivIDtAhGhs~~vi~~ik~ik~~~~~v~viaGNv~T~-~~a~~L~~aGaD~vkV-GiG~GsiCtTr 307 (486)
T PRK05567 230 EERAEALVKAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATA-EAARALIEAGADAVKV-GIGPGSICTTR 307 (486)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHH-HHHHHHHHCCCCEEEE-CCCCCCCCCCC
T ss_conf 999999997699889950445215778999999974078773687512019-9999999729876996-56688665134
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf ----6533220135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r 146 ----GGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 146 ----~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
-|-| .+.-|.+..+...++++.|..||||+ .-.+.+...+|||.+-+||.+-+..+
T Consensus 308 ~v~GvGvP----q~tAv~~~a~~a~~~~v~iIADGGi~~sGdi~KAla~GAd~VMlGs~lAgt~E 368 (486)
T PRK05567 308 IVAGVGVP----QITAIADAAEAAKKTGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEE 368 (486)
T ss_pred CCCCCCCC----HHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHCCCCEEEECCHHCCCCC
T ss_conf 32477864----69999999999986597799648835435799998658988986612147767
No 136
>PRK08104 consensus
Probab=97.81 E-value=0.0035 Score=40.62 Aligned_cols=172 Identities=12% Similarity=0.180 Sum_probs=116.2
Q ss_pred EEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCC
Q ss_conf 1881706325889999999999965998999973426345843417899998641-256416856788512033676404
Q gi|254780975|r 5 IQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINIIAD 83 (224)
Q Consensus 5 ~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~ 83 (224)
-+|.|=+-..|..+...-.+.|.++|+..+-+-.- ..-..+.++.+++ +++..+-+ =+---...++...+
T Consensus 15 ~~iipVir~~~~~~a~~la~al~~gGi~~iEiTlr-------t~~a~~~I~~l~~~~p~~~vGa--GTV~~~e~~~~ai~ 85 (212)
T PRK08104 15 GPVVPVIVINKLEHAVPLAKALVAGGVRVLEVTLR-------TPCALEAIRAIAKEVPEAIVGA--GTVLNPQQLAEVTE 85 (212)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC-------CCHHHHHHHHHHHHCCCCEEEE--EECCCHHHHHHHHH
T ss_conf 98689997799999999999999879988999688-------8149999999998689856854--20267999999998
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECC-CCCCCCCCHHHHHHHH
Q ss_conf 7760799970664215899986776498--259985233344789988620140289983067-7653322013577899
Q gi|254780975|r 84 AGCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPG-FGGQQLIESTIPKIRQ 160 (224)
Q Consensus 84 ~g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG-~~Gq~f~~~~l~kI~~ 160 (224)
+|++.+.-..= + .++++.+++++. -+|+. ||-|...-+-.-++.|-+ -|. -.| -.+-++.
T Consensus 86 aGA~FiVSP~~--~--~~v~~~a~~~~i~~iPGv~----TpsEi~~A~~~G~~~vKl---FPA~~~g------G~~~lka 148 (212)
T PRK08104 86 AGAQFAISPGL--T--EELLKAATEGTIPLIPGIS----TVSELMLGMDYGLTEFKF---FPAEANG------GVKALQA 148 (212)
T ss_pred CCCCEEECCCC--C--HHHHHHHHHCCCCEECCCC----CHHHHHHHHHCCCCEEEE---CCCCCCC------CHHHHHH
T ss_conf 59999984899--9--9999999982997656769----999999999879997997---8762137------4999999
Q ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 86543138652698158998899999967998999742663789
Q gi|254780975|r 161 AKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 161 l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
++.-++ +++++.-|||+.+|+....++|.=..|.||.++..+
T Consensus 149 l~~p~p--~~~f~ptGGV~~~N~~~yl~~~~v~~vgGS~l~~~~ 190 (212)
T PRK08104 149 ISGPFS--QIRFCPTGGITPANYRDYLALKSVLCIGGSWLVPAD 190 (212)
T ss_pred HHCCCC--CCEEEECCCCCHHHHHHHHHCCCEEEEECHHHCCHH
T ss_conf 855589--981896489898899999807987999883538999
No 137
>PRK01659 consensus
Probab=97.80 E-value=0.00012 Score=50.05 Aligned_cols=38 Identities=34% Similarity=0.531 Sum_probs=20.0
Q ss_pred CCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf 652698158998-89999996799899974266378998
Q gi|254780975|r 169 SISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFNQKGE 206 (224)
Q Consensus 169 ~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~~~d~ 206 (224)
.+++++-|||+. +.+..+.++|||.++.||+.+++++.
T Consensus 74 ~ipi~vGGGIrs~e~~~~~l~~GadkViigs~a~~n~~~ 112 (252)
T PRK01659 74 FIPLTVGGGISSVKDMKRLLRAGADKVSINSAAVLRPEL 112 (252)
T ss_pred CCCEEEECCEECHHHHHHHHHCCCCEEEECHHHHHCHHH
T ss_conf 974799633200688889874488559831777529153
No 138
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.80 E-value=0.00039 Score=46.74 Aligned_cols=106 Identities=15% Similarity=0.341 Sum_probs=68.7
Q ss_pred CCEEEE---ECCCCCCHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 607999---70664215899986776498-25998523334478998862-01402899830677653322013577899
Q gi|254780975|r 86 CDIITF---HPESSPHIRRSLRTIHAMGK-KTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQ 160 (224)
Q Consensus 86 ~d~i~~---H~E~~~~~~~~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~ 160 (224)
.|.+-+ |......+.+.++.+|+... +.-|.+-.+ .++.+...++ .+|.||+ -.|.++.+.+
T Consensus 163 sd~iLIkdNHi~~~g~i~~ai~~~r~~~~~~~~IeVEv~-~l~q~~~a~~~g~DiI~L---------Dnm~~~~~~~--- 229 (285)
T PRK07428 163 DDAVMIKDNHIQAAGGIGEAITRIRQQIPYPLTIEVETE-TLEQVQEALEYGADIIML---------DNMPVDQMQQ--- 229 (285)
T ss_pred CCCEEEEHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEC-CHHHHHHHHHCCCCEEEE---------CCCCHHHHHH---
T ss_conf 750567774752028999999999974899826999969-899999999669999998---------7999999999---
Q ss_pred HHHHHHC--CCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 8654313--8652698158998899999967998999742663789
Q gi|254780975|r 161 AKALIGK--RSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 161 l~~~~~~--~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
..++..+ .++.+++-||||.+|+..+.+.|+|.++.|+-..+.+
T Consensus 230 ~v~~l~~~~~~v~iEaSGgIn~~ni~~yA~tGVD~Is~galt~~~~ 275 (285)
T PRK07428 230 AVQLIRQQNPRVKIEASGNITLETIRAVAETGVDYISTSAPITRSP 275 (285)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf 9999873089889999899999999999974999998383106997
No 139
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.79 E-value=0.0004 Score=46.66 Aligned_cols=105 Identities=20% Similarity=0.400 Sum_probs=67.9
Q ss_pred CEEEE---ECCCCCCHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 07999---70664215899986776498-25998523334478998862-014028998306776533220135778998
Q gi|254780975|r 87 DIITF---HPESSPHIRRSLRTIHAMGK-KTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQA 161 (224)
Q Consensus 87 d~i~~---H~E~~~~~~~~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l 161 (224)
|.|-+ |......+.+.++.+|+... ..-+.+-.+| ++.+...++ .+|.|++= .|.+ +.+++.
T Consensus 152 d~iLikdNHi~~~g~~~~av~~~r~~~~~~~kIeVEv~t-l~ea~~a~~~g~D~I~LD---------n~~~---~~~~~~ 218 (269)
T cd01568 152 DAVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVET-LEEAEEALEAGADIIMLD---------NMSP---EELKEA 218 (269)
T ss_pred CEEEEEHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECC-HHHHHHHHHCCCCEEEEC---------CCCH---HHHHHH
T ss_conf 428980506867389999999999868998439999498-999999997699999987---------9899---999999
Q ss_pred HHHHHC-CCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 654313-8652698158998899999967998999742663789
Q gi|254780975|r 162 KALIGK-RSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 162 ~~~~~~-~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
.++++. .++.+++-||||.+|+..+.+.|+|.++.|+-..+.+
T Consensus 219 v~~~~~~~~v~ieaSGgI~~~ni~~ya~~GvD~Is~g~lt~s~~ 262 (269)
T cd01568 219 VKLLKGLPRVLLEASGGITLENIRAYAETGVDVISTGALTHSAP 262 (269)
T ss_pred HHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHCCCC
T ss_conf 99847799859999899999999999975999999084005997
No 140
>PRK08782 consensus
Probab=97.77 E-value=0.00078 Score=44.82 Aligned_cols=171 Identities=15% Similarity=0.247 Sum_probs=113.7
Q ss_pred EEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCC
Q ss_conf 1881706325889999999999965998999973426345843417899998641-256416856788512033676404
Q gi|254780975|r 5 IQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINIIAD 83 (224)
Q Consensus 5 ~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~ 83 (224)
-+|.|=+-..|.....+..+.|.++|+..+-+-.-. .-..+.++.+++ ++++.+-+- +---...++...+
T Consensus 17 ~~iipVir~~~~~~a~~~~eal~~gGi~~iEiTlrt-------~~a~~~i~~l~~~~p~~~vGaG--TV~~~e~~~~a~~ 87 (219)
T PRK08782 17 AGILPVVTVDTLDQARRVADALLEGGLPAIELTLRT-------PVAIEALAMLKRELPNIVIGAG--TVLSERQLRQSVD 87 (219)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC-------CHHHHHHHHHHHHCCCCEEEEE--EECCHHHHHHHHH
T ss_conf 897899975999999999999998799879996799-------3399999999986899479999--7058999999998
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCC--CCCCCCCHHHHHHH
Q ss_conf 7760799970664215899986776498--2599852333447899886201402899830677--65332201357789
Q gi|254780975|r 84 AGCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPGF--GGQQLIESTIPKIR 159 (224)
Q Consensus 84 ~g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~--~Gq~f~~~~l~kI~ 159 (224)
+|++.+.-..= + .++++++++.+. -+|. .||-|...-+-.-++.+-+ -|+- +| ...++
T Consensus 88 aGA~FiVSP~~--~--~~v~~~a~~~~i~~iPGv----~TpSEi~~A~~~G~~~vKl---FPA~~~Gg-------~~~lk 149 (219)
T PRK08782 88 AGADFLVTPGT--P--APLARLLADAPIPAVPGA----ATPTELLTLMGLGFRVCKL---FPATAVGG-------LQMLK 149 (219)
T ss_pred CCCCEEECCCC--C--HHHHHHHHHCCCCEECCC----CCHHHHHHHHHCCCCEEEE---CCCHHCCC-------HHHHH
T ss_conf 49989987899--7--999999998199764785----9999999999879998997---77322084-------99999
Q ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 986543138652698158998899999967998999742663789
Q gi|254780975|r 160 QAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 160 ~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
.++.-++ +++++.-||||.+|+.++.++|.-..|.||.++..+
T Consensus 150 al~~pfp--~~~f~pTGGV~~~N~~~yl~~~~v~~vgGS~l~~~~ 192 (219)
T PRK08782 150 GLAGPLS--ELKLCPTGGISETNAAEFLSQPNVLCIGGSWMVPKD 192 (219)
T ss_pred HHHCCCC--CCEEEECCCCCHHHHHHHHHCCCEEEEECHHHCCHH
T ss_conf 9847699--981876799898789999807993999882538999
No 141
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.77 E-value=0.0002 Score=48.63 Aligned_cols=76 Identities=22% Similarity=0.444 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHH
Q ss_conf 3447899886201402899830677653322013577899865431386526981589-988999999679989997426
Q gi|254780975|r 121 TPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSS 199 (224)
Q Consensus 121 T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsa 199 (224)
.|++..+.|.+.+|++.+.=.+.-..|++-+.+.+++|.+ +..++++++||| +.+.+..+.+.||+.+|.||+
T Consensus 31 dP~~~A~~~~~~a~~lhivDLd~a~~g~~~n~~~I~~i~~------~~~~piqvGGGIrs~e~i~~~l~~Ga~kViigt~ 104 (228)
T PRK04128 31 DPVEIALRFSEYVDKIHVVDLDGAFEGKPKNLDVVKNIIE------ETGLKVQVGGGFRTYESIKDAYEIGVENVIIGTK 104 (228)
T ss_pred CHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHH------HCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 9999999999669989999880301498326999999986------5496289738607799999999689976981451
Q ss_pred HHC
Q ss_conf 637
Q gi|254780975|r 200 FFN 202 (224)
Q Consensus 200 if~ 202 (224)
.++
T Consensus 105 a~~ 107 (228)
T PRK04128 105 AFD 107 (228)
T ss_pred CCC
T ss_conf 258
No 142
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.76 E-value=0.0018 Score=42.44 Aligned_cols=170 Identities=15% Similarity=0.234 Sum_probs=112.0
Q ss_pred EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf 881706325889999999999965998999973426345843417899998641-2564168567885120336764047
Q gi|254780975|r 6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINIIADA 84 (224)
Q Consensus 6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~~ 84 (224)
+|.|=+-..|..+..+-.+.|.++|+..+-+-.-. | -..+.++.+++ ++++.+=+= +---...++...++
T Consensus 16 ~ii~Vlr~~~~~~a~~i~~al~~gGi~~iEiTl~t----p---~a~~~I~~l~~~~p~~~vGaG--TV~~~e~~~~a~~a 86 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRT----P---AALEAIRAIRKEVPEALIGAG--TVLNPEQLAQAIEA 86 (212)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC----C---HHHHHHHHHHHHCCCCEEEEE--EECCHHHHHHHHHC
T ss_conf 87999974899999999999998799789995789----6---199999999975898179653--31348899999984
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCE--EEEEEECCCCHHHHHHHHHHCCEEEEEEEECC--CCCCCCCCHHHHHHHH
Q ss_conf 7607999706642158999867764982--59985233344789988620140289983067--7653322013577899
Q gi|254780975|r 85 GCDIITFHPESSPHIRRSLRTIHAMGKK--TGVAINPETPVAILEDVIDEIDMILIMTVNPG--FGGQQLIESTIPKIRQ 160 (224)
Q Consensus 85 g~d~i~~H~E~~~~~~~~i~~i~~~g~k--~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG--~~Gq~f~~~~l~kI~~ 160 (224)
|++.+.-..= + .++++.++++|.- +|+ .||-|...-+-.-++.|-+ -|. .+| .+.++.
T Consensus 87 GA~FiVSP~~--~--~~v~~~a~~~~i~~iPGv----~TpsEi~~A~~~G~~~vK~---FPA~~~gG-------~~~lka 148 (212)
T PRK05718 87 GAQFIVSPGL--T--PPLLKACQDGPIPLIPGV----NTPSELMLAMELGLRTFKF---FPAEASGG-------VKMLKA 148 (212)
T ss_pred CCCEEECCCC--C--HHHHHHHHHCCCCEECCC----CCHHHHHHHHHCCCCEEEE---CCCCCCCC-------HHHHHH
T ss_conf 9989984899--8--999999998199765786----9999999999879998997---87610179-------999999
Q ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 86543138652698158998899999967998999742663789
Q gi|254780975|r 161 AKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 161 l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
++.-++ +++++.=||||.+|+..+.+++.=..|.||.++..+
T Consensus 149 l~~p~p--~i~~~ptGGV~~~N~~~yl~~~~v~avgGS~l~~~~ 190 (212)
T PRK05718 149 LAGPFS--DVRFCPTGGISPANYRDYLALPNVLCIGGSWMVPKD 190 (212)
T ss_pred HHCCCC--CCEEEECCCCCHHHHHHHHCCCCEEEEECHHHCCHH
T ss_conf 856589--982886599898789999817886999873528999
No 143
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.75 E-value=0.00041 Score=46.57 Aligned_cols=117 Identities=20% Similarity=0.315 Sum_probs=73.2
Q ss_pred CHHHHHHCC-CC---------CCEEEE---ECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEE
Q ss_conf 033676404-77---------607999---7066421589998677649825998523334478998862-014028998
Q gi|254780975|r 75 DSHINIIAD-AG---------CDIITF---HPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMT 140 (224)
Q Consensus 75 ~~~i~~~~~-~g---------~d~i~~---H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~ 140 (224)
.+++++++- +| .|.|-+ |......+.+.++.+|+.....=+.+-.+ .++.+...+. .+|.||+
T Consensus 148 lR~leKyAV~~GGG~nHR~gL~D~iLIKdNHi~~~g~i~~ai~~~r~~~~~~kIeVEv~-sl~q~~ea~~~gaDiImL-- 224 (288)
T PRK07896 148 LRALQKYAVRCGGGVNHRMGLGDAALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVD-SLEQLDEVLAEGAELILL-- 224 (288)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEE--
T ss_conf 57999999997793555688754289862146530869999999998589961999979-799999987469999997--
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 3067765332201357789986543138--652698158998899999967998999742663789
Q gi|254780975|r 141 VNPGFGGQQLIESTIPKIRQAKALIGKR--SISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 141 V~PG~~Gq~f~~~~l~kI~~l~~~~~~~--~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
-.|. .+-+++.-++...+ ++.+++-||||.+|+..+.+.|+|.+.+|+---+.+
T Consensus 225 -------DNms---~e~~~~av~~~~~~~~~v~lEaSGgI~~~ni~~yA~tGVD~IS~G~LThs~~ 280 (288)
T PRK07896 225 -------DNFP---VWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAATGVDYLAVGALTHSVR 280 (288)
T ss_pred -------CCCC---HHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf -------7999---9999999999837698748999889999999999965999998785326997
No 144
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.74 E-value=0.00043 Score=46.48 Aligned_cols=102 Identities=13% Similarity=0.228 Sum_probs=64.0
Q ss_pred ECCCCCCHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 70664215899986776498-25998523334478998862-01402899830677653322013577899865431386
Q gi|254780975|r 92 HPESSPHIRRSLRTIHAMGK-KTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRS 169 (224)
Q Consensus 92 H~E~~~~~~~~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~ 169 (224)
|......+.+.++.+|+... ..-+.+-.+ .++.....+. .+|.|++= .|.++.+.+.-.+++- ...+
T Consensus 160 Hi~~~g~~~~ai~~~r~~~~~~~kIeVEv~-~l~ea~~a~~~gaDiI~LD---------n~~~e~~k~~v~~~~~-~~~~ 228 (272)
T PRK05848 160 HLKHIKDLKSFIQHARKNIPFTAKIEIECE-SLEEAKEAMNAGADIVMCD---------NMSVEETKEIVAYRNA-NYPH 228 (272)
T ss_pred HHHHHCCHHHHHHHHHHHCCCCCEEEEECC-CHHHHHHHHHCCCCEEEEC---------CCCHHHHHHHHHHHHC-CCCC
T ss_conf 887726899999999985899846999749-9999999984599989958---------9999999999998746-4887
Q ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 52698158998899999967998999742663789
Q gi|254780975|r 170 ISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 170 ~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
+.|++-||||.+|+..+.+.|+|.+++|+..-+.+
T Consensus 229 v~ieaSGGI~~~ni~~yA~~GvD~Is~g~lth~a~ 263 (272)
T PRK05848 229 VLLEASGNISLETINAYAKSGVDAISSGSLIHQAT 263 (272)
T ss_pred EEEEEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf 79999799989999999965999998797767993
No 145
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.73 E-value=0.00024 Score=48.08 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=24.7
Q ss_pred EEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf 997342634584341789999864125641685678851203367640477607999
Q gi|254780975|r 35 HFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITF 91 (224)
Q Consensus 35 HiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~ 91 (224)
-+|+.||..|...- ++-|..+.+|...+..|.+.|+|.+.+
T Consensus 6 aIdl~~g~~Vk~~~----------------~~~~~~~gdP~~~a~~~~~~gadelhi 46 (243)
T cd04731 6 CLDVKDGRVVKGVN----------------FKNLRDAGDPVELAKRYNEQGADELVF 46 (243)
T ss_pred EEEEECCEEEECCC----------------CCCEEECCCHHHHHHHHHHCCCCEEEE
T ss_conf 99999999994635----------------755068889999999999869999999
No 146
>pfam03932 CutC CutC family. Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length are found in both eukaryotes and bacteria.
Probab=97.73 E-value=0.0048 Score=39.78 Aligned_cols=167 Identities=20% Similarity=0.259 Sum_probs=98.4
Q ss_pred HHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEEC--------------CHHHHHHCCCCCC
Q ss_conf 99999965998999973426345843417899998641256416856788512--------------0336764047760
Q gi|254780975|r 22 EISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSI--------------DSHINIIADAGCD 87 (224)
Q Consensus 22 ~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P--------------~~~i~~~~~~g~d 87 (224)
......++|+|.+.+ ++.-.+-.+|=++..++..++..+ +.+|.|+-.- .+-+..+.+.|++
T Consensus 12 ~a~~A~~~GAdRIEL--Cs~L~~GGlTPs~~~i~~~~~~~~--ipv~vMIRPR~G~F~Ys~~E~~~M~~dI~~~~~~G~~ 87 (202)
T pfam03932 12 SLLAAQAGGADRVEL--CANLAVGGLTPSYGVIKSAAQRAK--IPVYVMIRPRGGDFVYSDHELKAMLEDILKAVELGAP 87 (202)
T ss_pred HHHHHHHCCCCEEEE--CCCCCCCCCCCCHHHHHHHHHHCC--CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999849999986--267666897989999999998659--9749998427998864989999999999999986989
Q ss_pred EEEEECCCCC---C---HHHHHHHHHHCCCEEEEEEECC-CCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 7999706642---1---5899986776498259985233-34478998862-0140289983067765332201357789
Q gi|254780975|r 88 IITFHPESSP---H---IRRSLRTIHAMGKKTGVAINPE-TPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIR 159 (224)
Q Consensus 88 ~i~~H~E~~~---~---~~~~i~~i~~~g~k~Giai~p~-T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~ 159 (224)
-+.|=+=+.+ | +.+.++..+...+-+-=|+.-. .+.+.++.+++ -+++|| | -+|+.-...-++.++
T Consensus 88 GvV~G~L~~d~~iD~~~~~~li~~a~~l~~TFHRAfD~~~d~~~al~~L~~lG~~rIL--T----SGg~~~a~~g~~~L~ 161 (202)
T pfam03932 88 GVVLGALTADGEIDTKRMEKLIEAAGGLGVTFHRAFDMCPDPEEALEQLIELGCERVL--T----SGGPLSALEGLEKLA 161 (202)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECHHHCCCCHHHHHHHHHHCCCCEEE--C----CCCCCCHHHHHHHHH
T ss_conf 7899888899982999999999974688559862043059999999999975998787--5----799787667499999
Q ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHH-CCCCEEEECHHH
Q ss_conf 98654313865269815899889999996-799899974266
Q gi|254780975|r 160 QAKALIGKRSISLEVDGGVTSRNIKSLVQ-AGADLLVVGSSF 200 (224)
Q Consensus 160 ~l~~~~~~~~~~I~vDGGvn~~~i~~l~~-~Gad~~V~Gsai 200 (224)
++.+..+. .+.|..-||||.+|++.+.+ .|++-+ =||+|
T Consensus 162 ~l~~~a~~-~i~Im~GgGI~~~N~~~l~~~~g~~~~-H~sai 201 (202)
T pfam03932 162 SLVAQAGG-RISIMAGAGVNAENIAELRQLTGVAEV-HGSAI 201 (202)
T ss_pred HHHHHCCC-CEEEEECCCCCHHHHHHHHHHHCCCEE-EEECC
T ss_conf 99996599-849995799899999999997199488-56246
No 147
>pfam04481 DUF561 Protein of unknown function (DUF561). Protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.
Probab=97.72 E-value=0.005 Score=39.68 Aligned_cols=201 Identities=11% Similarity=0.143 Sum_probs=136.9
Q ss_pred CCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHC
Q ss_conf 98188170632588999999999996599899997342634584341789999864125641685678851203367640
Q gi|254780975|r 3 PSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIA 82 (224)
Q Consensus 3 k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~ 82 (224)
+-+|+...|.+.|......-.+..+.+|++|+- |. -.|+.++..++.+++|+=|- .-+|+.+. ...
T Consensus 13 ~alKVIsGL~NFd~~~V~~i~~AA~~ggAt~vD--IA---------~dp~LV~~v~~~~~lPiCVS--aVep~~f~-~aV 78 (243)
T pfam04481 13 KAIKVISGLNNFNYEQVLKIARASQIAKATYVD--IA---------ADPQLVKVVKSVSNIPICVS--AVEPELLY-EAV 78 (243)
T ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEE--EC---------CCHHHHHHHHHHCCCCEEEE--CCCHHHHH-HHH
T ss_conf 407764072326989999999998715997687--41---------79999999997289985860--47978889-999
Q ss_pred CCCCCEEEEE-CCC----C--CCHHHHHHHHHHCC---CEEEEEE-ECCC-CHHHHHHHHHH-----CCEEEEEEEECCC
Q ss_conf 4776079997-066----4--21589998677649---8259985-2333-44789988620-----1402899830677
Q gi|254780975|r 83 DAGCDIITFH-PES----S--PHIRRSLRTIHAMG---KKTGVAI-NPET-PVAILEDVIDE-----IDMILIMTVNPGF 145 (224)
Q Consensus 83 ~~g~d~i~~H-~E~----~--~~~~~~i~~i~~~g---~k~Giai-~p~T-~~~~i~~~l~~-----~D~vliM~V~PG~ 145 (224)
++|+|+|-+- +++ . -..++++...|+.. -.+-|.. -|.+ |++.=..+..+ +|.++- +-|.
T Consensus 79 ~AGA~lvEIGNfDsFY~qGr~f~a~eVL~Lt~~Tr~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQT---EGgt 155 (243)
T pfam04481 79 LAGADLVEIGNFDSFYKQGRVLSVCEIIALVKETRKLLPHTPLCVTIPHILKLKEQINLAKQLESLGIDLIQT---EGKI 155 (243)
T ss_pred HHCCCEEEECCHHHHHHCCCEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEC---CCCC
T ss_conf 8278789864536476547664499999999999976899844774576356789999999999818877872---8987
Q ss_pred CCCCCCCHHHHHHHHHHH-------HHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 653322013577899865-------4313865269815899889999996799899974266378998999999999999
Q gi|254780975|r 146 GGQQLIESTIPKIRQAKA-------LIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK 218 (224)
Q Consensus 146 ~Gq~f~~~~l~kI~~l~~-------~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~ 218 (224)
+-+++.+.++..|++.-- +-..-++++.---|++.-|.|-...+||--+=+||++=+-.|..+....+++|++
T Consensus 156 ss~p~~~g~~glIekaapTLAaay~IS~~v~vPVlcASGlS~vT~PmAiaaGAsGVGVGSavn~Lnd~~aMva~vr~l~~ 235 (243)
T pfam04481 156 TSISKNHCVNDLIEKSASTLASTYEISKHVQLPVICASGLSDVTVPLAFSYGASGIGIGSAVSKLNDIEKMVNYISEIKK 235 (243)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 77888842577798875889999999861787667546764214788997487710065776500249999999999999
Q ss_pred HH
Q ss_conf 78
Q gi|254780975|r 219 SA 220 (224)
Q Consensus 219 ~a 220 (224)
+-
T Consensus 236 al 237 (243)
T pfam04481 236 AI 237 (243)
T ss_pred HH
T ss_conf 97
No 148
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=97.69 E-value=0.00048 Score=46.15 Aligned_cols=95 Identities=21% Similarity=0.420 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC--CCCEE
Q ss_conf 215899986776498-25998523334478998862-014028998306776533220135778998654313--86526
Q gi|254780975|r 97 PHIRRSLRTIHAMGK-KTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGK--RSISL 172 (224)
Q Consensus 97 ~~~~~~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~--~~~~I 172 (224)
.++.+.++.+++..- ..-+.+-.+| ++.+...+. .+|.||+ -.| ..+.+++..+++.+ ..+.+
T Consensus 64 g~~~~~i~~~~~~~~~~~~I~VEv~t-l~e~~~a~~~~~d~I~L---------Dn~---spe~l~~~v~~l~~~~~~v~i 130 (169)
T pfam01729 64 GSITEAVRRAREVAPFAVKIEVEVEN-LEELEEALEAGADIIML---------DNF---SPEEVREAVEELDERAGRVLL 130 (169)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEEEH-HHHHHHHHHCCCCEEEE---------CCC---CHHHHHHHHHHHHHHCCCEEE
T ss_conf 79999999999967999709999601-99899998469989997---------799---999999999999975896799
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 98158998899999967998999742663789
Q gi|254780975|r 173 EVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 173 ~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
++-||||.+|+..+.+.|+|.+.+|+...+.+
T Consensus 131 EaSGgI~~~ni~~yA~tGvD~IS~galt~sa~ 162 (169)
T pfam01729 131 EVSGGITLDNVLEYAKTGVDVISVGALTHSVP 162 (169)
T ss_pred EECCCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf 96189999999999976999998586446997
No 149
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.66 E-value=0.00034 Score=47.15 Aligned_cols=144 Identities=15% Similarity=0.197 Sum_probs=93.3
Q ss_pred CCCCEEEEEEEEEECCHH---HHHHCCCCCCEEEEECCC------------CCCHHHHHHHHHHCCCE-EEEEEECCCCH
Q ss_conf 256416856788512033---676404776079997066------------42158999867764982-59985233344
Q gi|254780975|r 60 YSDSVFDCHLMISSIDSH---INIIADAGCDIITFHPES------------SPHIRRSLRTIHAMGKK-TGVAINPETPV 123 (224)
Q Consensus 60 ~t~~~~dvHLMv~~P~~~---i~~~~~~g~d~i~~H~E~------------~~~~~~~i~~i~~~g~k-~Giai~p~T~~ 123 (224)
.++.|+=+-++...++.| .+++.++|+|.+-+-.-+ -+.+.++++++++.-.+ +-+=|.|+++.
T Consensus 96 ~~~~pli~Si~~~~~~~~~~~a~~~~~~gad~lElNiScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKLsp~~~~ 175 (289)
T cd02810 96 FPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDL 175 (289)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCH
T ss_conf 79953999788898789999999999847984899840367565532014999999999999860268748842788761
Q ss_pred HHHHHHHHH-----CCEEEEE-E-----------------EECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-
Q ss_conf 789988620-----1402899-8-----------------306776533220135778998654313865269815899-
Q gi|254780975|r 124 AILEDVIDE-----IDMILIM-T-----------------VNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT- 179 (224)
Q Consensus 124 ~~i~~~l~~-----~D~vliM-~-----------------V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn- 179 (224)
+.+..++.. +|.|.+- | ..=|.+|.+..+.++..|+++++..+ .++.|.-=|||.
T Consensus 176 ~~~~~ia~~~~~~ga~gv~~~Nt~~~~~~~~~~~~~~~~~~~gGlSG~~i~~~al~~v~~~~~~~~-~~i~Iig~GGI~~ 254 (289)
T cd02810 176 EDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQ-LDIPIIGVGGIDS 254 (289)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCC
T ss_conf 689999999997599689996787765554444554456776523662778899999999999749-9960999899399
Q ss_pred HHHHHHHHHCCCCEEEECHHHHCC-C
Q ss_conf 889999996799899974266378-9
Q gi|254780975|r 180 SRNIKSLVQAGADLLVVGSSFFNQ-K 204 (224)
Q Consensus 180 ~~~i~~l~~~Gad~~V~Gsaif~~-~ 204 (224)
.+.+.+...+||+.+=++|+++.. +
T Consensus 255 ~~da~e~i~aGA~~Vqv~Tal~~~Gp 280 (289)
T cd02810 255 GEDVLEMLMAGASAVQVATALMWDGP 280 (289)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCH
T ss_conf 99999999849979999899997586
No 150
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=97.66 E-value=0.006 Score=39.15 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=103.1
Q ss_pred HHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCC-EEEEEEEEEECCHHHHHHC-CCCCCEEEEECCCCC
Q ss_conf 999999965998999973426345843417899998641-2564-1685678851203367640-477607999706642
Q gi|254780975|r 21 EEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDS-VFDCHLMISSIDSHINIIA-DAGCDIITFHPESSP 97 (224)
Q Consensus 21 ~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~-~~dvHLMv~~P~~~i~~~~-~~g~d~i~~H~E~~~ 97 (224)
+.+..+.+.|+||+=+=+-... |- -.+++....+.+ .... +--|=+-|+.....+.... ..+.|++=+|=+.+.
T Consensus 16 eda~~a~~lGaD~iGFIFy~kS--PR-yV~~e~a~~L~~~l~k~g~k~VGVFVN~~~e~I~~i~~~~~LDiVQLHGdEs~ 92 (611)
T PRK13803 16 ALASEAVQMGADFIGIITYSKS--KR-YVNNKMAANLAKAIRKAGGRPVAVFVDFSAKALESFCKSTGIDVVQLHGAISK 92 (611)
T ss_pred HHHHHHHHCCCCEEEEECCCCC--CC-CCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCH
T ss_conf 9999999779698978505899--87-58878899999753415897699996999899999998569997985898886
Q ss_pred C----HHHHHHHHHHCCCEEEEEEEC--CCCHHHHHHHHHHCCEEEEEEE--ECCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 1----589998677649825998523--3344789988620140289983--0677653322013577899865431386
Q gi|254780975|r 98 H----IRRSLRTIHAMGKKTGVAINP--ETPVAILEDVIDEIDMILIMTV--NPGFGGQQLIESTIPKIRQAKALIGKRS 169 (224)
Q Consensus 98 ~----~~~~i~~i~~~g~k~Giai~p--~T~~~~i~~~l~~~D~vliM~V--~PG~~Gq~f~~~~l~kI~~l~~~~~~~~ 169 (224)
. +....+.++..++++.=++.- ..+++.+..|.+.+|++|+=+- .+|-+|+.|+=+.+.. . ..+
T Consensus 93 ~~~~~lp~~c~~~~~~~i~ViKai~i~~~~DLe~l~~Y~~~~d~lLfD~~~~~~GGTGktFDW~lL~~------~--~~~ 164 (611)
T PRK13803 93 AEHHLLPASLQRIYVLSVNKNGSILKDNAGGLEHLDEKRDTFGFLLFDNEAVLIGGSGQSYDLNQRFN------Y--TGK 164 (611)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHH------C--CCC
T ss_conf 77866588878888716416776520777669998754420478986589999997986358787861------7--899
Q ss_pred CEEEEECCCCHHHHHHHHHC
Q ss_conf 52698158998899999967
Q gi|254780975|r 170 ISLEVDGGVTSRNIKSLVQA 189 (224)
Q Consensus 170 ~~I~vDGGvn~~~i~~l~~~ 189 (224)
.+...-||+|.+|+.++.+.
T Consensus 165 ~Pf~LAGGLnpdNV~eAi~~ 184 (611)
T PRK13803 165 FRYFLSGGLSPTNVDRAIQL 184 (611)
T ss_pred CCEEEECCCCHHHHHHHHHC
T ss_conf 99899748976879999972
No 151
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.66 E-value=0.00066 Score=45.30 Aligned_cols=104 Identities=19% Similarity=0.398 Sum_probs=67.1
Q ss_pred CEEEE---ECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 07999---7066421589998677649825998523334478998862-0140289983067765332201357789986
Q gi|254780975|r 87 DIITF---HPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAK 162 (224)
Q Consensus 87 d~i~~---H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~ 162 (224)
|.+-+ |......+.+.++..++.....-+.+-.+|. +.+...+. .+|.||+ -.| ..+.+++.-
T Consensus 161 d~iLiKdNHi~~~g~i~~~v~~~~~~~~~~kIeVEv~tl-~q~~~a~~~gaDiI~L---------Dnm---s~~~lk~av 227 (277)
T PRK05742 161 DAFLIKENHIAACGGIAQAVAAAHRIAPGKPVEVEVESL-DELRQALAAGADIVML---------DEL---SLDDMREAV 227 (277)
T ss_pred CEEEEECCHHHHCCCHHHHHHHHHHHCCCCCEEEEECCH-HHHHHHHHCCCCEEEE---------CCC---CHHHHHHHH
T ss_conf 358974546555067999999999848997269996779-9999987469989998---------699---999999999
Q ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 543138652698158998899999967998999742663789
Q gi|254780975|r 163 ALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 163 ~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
++.. .++.+++-||||.+|+.++.+.|+|.+++|+-.-+.+
T Consensus 228 ~~~~-~~~~iEaSGGI~~~ni~~yA~tGvD~IS~galt~~a~ 268 (277)
T PRK05742 228 RLTA-GRAKLEASGGINETTLRVIAETGVDYISIGAMTKDVK 268 (277)
T ss_pred HHHC-CCEEEEEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf 9747-9748999889999999999974999998880106996
No 152
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.65 E-value=0.0063 Score=39.04 Aligned_cols=125 Identities=20% Similarity=0.257 Sum_probs=82.2
Q ss_pred CHHHHHHCCCCCCEEEEECCCC--CCHHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCC-----
Q ss_conf 0336764047760799970664--2158999867764982-5998523334478998862-01402899830677-----
Q gi|254780975|r 75 DSHINIIADAGCDIITFHPESS--PHIRRSLRTIHAMGKK-TGVAINPETPVAILEDVID-EIDMILIMTVNPGF----- 145 (224)
Q Consensus 75 ~~~i~~~~~~g~d~i~~H~E~~--~~~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~----- 145 (224)
..-.+.+.++|+|.+++-.-+- ....+.+++||+..-. .-+|=|-.|. +-...+++ -+|.|.+ ++-||-
T Consensus 240 ~eRa~~Lv~aGvDvlvIDtAhGhs~~v~~~ik~ik~~~p~v~vIaGNVaT~-~~a~~Li~aGAD~vkV-GiGpGSiCTTR 317 (499)
T PTZ00314 240 KERAAALIDAGVDVLVLDSSQGNSIYQIDFIKWIKSTYPHLEVIAGNVVTQ-DQAKNLIDAGADGIRI-GMGSGSICTTQ 317 (499)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECHH-HHHHHHHHCCCCEEEE-CCCCCCCCCCC
T ss_conf 999999998699899981688772789999999885279884676433109-9999999749987997-53588551046
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf ----6533220135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r 146 ----GGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 146 ----~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
-|-| .+.-|.+..+...++++.|+.||||+ ...+.+.+.+|||.+-.||.+-+.+.
T Consensus 318 ~v~GvGvP----q~tAv~~~a~~a~~~gvpiIADGGIr~sGDi~KAlAaGAd~VMlGsllAGt~E 378 (499)
T PTZ00314 318 EVCAVGRP----QATAVYKVARYAHSRGVPCIADGGIRSSGDIVKALALGASCVMLGSMLAGTEE 378 (499)
T ss_pred CCCCCCCC----HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 43466786----05679999998644998599147846431899998728987860841047677
No 153
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=97.64 E-value=0.0062 Score=39.07 Aligned_cols=195 Identities=15% Similarity=0.253 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEE-CCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEEC
Q ss_conf 8899999999999659989999734-263458434178999986412564168567885120336764047760799970
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDVM-DGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHP 93 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDIm-Dg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~ 93 (224)
++=++.+....+.++|+|.|-+-.= |.. -.-++.+..|++..+.++.+- ...-..+++...+..++.+|+=+
T Consensus 22 ~~Pd~~~~a~~~~~~Ga~gITvH~R~DrR-----HI~~~Dv~~l~~~~~~~lNiE--~apt~e~i~ia~~~kP~qvtLVP 94 (240)
T PRK05265 22 NYPDPVRAALIAEEAGADGITVHLREDRR-----HIRDRDVRRLRETLKTRLNLE--MAATEEMLDIALEIKPHQVTLVP 94 (240)
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCCCC-----CCCCHHHHHHHHHCCCCEEEE--CCCCHHHHHHHHHCCCCEEEECC
T ss_conf 99999999999998399858952688634-----466256999998648636871--18818899999984998599888
Q ss_pred CCC---------------CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEE-CCCCCCCCCCHHHH
Q ss_conf 664---------------21589998677649825998523334478998862-01402899830-67765332201357
Q gi|254780975|r 94 ESS---------------PHIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVN-PGFGGQQLIESTIP 156 (224)
Q Consensus 94 E~~---------------~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~-PG~~Gq~f~~~~l~ 156 (224)
|.- +.+..+++.+++.|+++.+=+.|+. +.++.-.. -+|.|=+-|-. .-..+++-....++
T Consensus 95 e~r~e~TTegGld~~~~~~~L~~~i~~lk~~gIrvSLFiDPd~--~~i~~a~~~Gad~VElhTG~Ya~a~~~~~~~~el~ 172 (240)
T PRK05265 95 EKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPDP--EQIEAAAEVGADRIELHTGPYADAKTEAEQAAELE 172 (240)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCH--HHHHHHHHHCCCEEEEECHHHHHHCCCCHHHHHHH
T ss_conf 9988626788937765789999999999865981799727987--89999998493999983478786357521999999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCC-CCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 7899865431386526981589988999999679-9899974266378998999999999999
Q gi|254780975|r 157 KIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAG-ADLLVVGSSFFNQKGEISYAKRLNDLKK 218 (224)
Q Consensus 157 kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~G-ad~~V~Gsaif~~~d~~~~~~~l~~l~~ 218 (224)
|+++..++-.+.++.+-.--|+|.+|++.+.+.. .+-+-.|-+|....-.....+.++++++
T Consensus 173 ~i~~aa~~A~~lGL~VnAGHgLn~~Nl~~i~~ip~i~EvsIGHaiI~eAl~~Gl~~aV~~~~~ 235 (240)
T PRK05265 173 RIAEAAALAASLGLGVNAGHGLNYHNVKPIAAIPGIEELNIGHAIIARALFVGLEEAVREMKA 235 (240)
T ss_pred HHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999986987853789887778998448997488457999999999749999999999
No 154
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.63 E-value=0.00032 Score=47.31 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=21.4
Q ss_pred EEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEE
Q ss_conf 9734263458434178999986412564168567885120336764047760799
Q gi|254780975|r 36 FDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIIT 90 (224)
Q Consensus 36 iDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~ 90 (224)
+|++||.-|.-.....+. ++.. ..-|....+|..++..|.+.|++.+.
T Consensus 6 iDi~~g~vVr~~~G~~~~------y~~~-~~~~~~~~dP~~~a~~~~~~ga~~lh 53 (233)
T cd04723 6 IDLKDGVVVHGVGGDRDN------YRPI-TSNLCSTSDPLDVARAYKELGFRGLY 53 (233)
T ss_pred EEEECCEEEEEECCCCCC------CCCC-CCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 996699699845667654------5444-43730587999999999987989899
No 155
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.62 E-value=0.00081 Score=44.73 Aligned_cols=104 Identities=21% Similarity=0.338 Sum_probs=67.9
Q ss_pred CEEEE---ECCCCCCHHHHHHHHHHC-CCEEEEEEECCCCHHHHHH-HHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 07999---706642158999867764-9825998523334478998-862014028998306776533220135778998
Q gi|254780975|r 87 DIITF---HPESSPHIRRSLRTIHAM-GKKTGVAINPETPVAILED-VIDEIDMILIMTVNPGFGGQQLIESTIPKIRQA 161 (224)
Q Consensus 87 d~i~~---H~E~~~~~~~~i~~i~~~-g~k~Giai~p~T~~~~i~~-~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l 161 (224)
|.|-+ |......+.+.++.+|+. +...=|.+-.+| ++.+.. +-..+|.||+ -.|.|+. +++.
T Consensus 159 d~iLIKdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~s-~~q~~~a~~~g~diImL---------DNm~p~~---ik~~ 225 (277)
T PRK08072 159 DGVMIKDNHIAFAGSITKAVTSVREKLGHMVKIEVETET-EEQVREAVAAGADIIMF---------DNRTPDE---IREF 225 (277)
T ss_pred CEEEEEHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECC-HHHHHHHHHCCCCEEEE---------CCCCHHH---HHHH
T ss_conf 407864779862078999999999865998559997198-99999998679989998---------7989999---9999
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 6543138652698158998899999967998999742663789
Q gi|254780975|r 162 KALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 162 ~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
.++.+ .++.+++-||||.+|+.++.+.|+|.+++|+-..+.+
T Consensus 226 v~~~~-~~~~~EaSGgI~~~ni~~yA~tGVD~IS~g~lths~~ 267 (277)
T PRK08072 226 VKLVP-SAIVTEASGGITLENLPKYGGTGVDYISLGFLTHSVK 267 (277)
T ss_pred HHHHC-CCEEEEEECCCCHHHHHHHHHCCCCEEECCHHCCCCC
T ss_conf 99616-9649999889989999999964999998681006997
No 156
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=97.62 E-value=0.00079 Score=44.77 Aligned_cols=106 Identities=9% Similarity=0.280 Sum_probs=63.2
Q ss_pred CCEEEEECCC------CCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 6079997066------4215899986776498259985233344789988620140289983067765332201357789
Q gi|254780975|r 86 CDIITFHPES------SPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIR 159 (224)
Q Consensus 86 ~d~i~~H~E~------~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~ 159 (224)
.|.+-+--++ ..++.+.++.+|+.....-|.+-.+|--+..+-+-..+|.||+ -.|.|+.+ +
T Consensus 157 sD~vLIKdNH~~~~~~~~~~~~ai~~~r~~~p~~kIeVEv~tl~~~~ea~~~gaD~IlL---------Dnmsp~~l---~ 224 (284)
T PRK06096 157 AETILLFANHRHFLHDNQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRAQPDVLQL---------DKFSPQQA---T 224 (284)
T ss_pred CCEEEEECCHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEE---------CCCCHHHH---H
T ss_conf 63588700249887253579999999997589998899809999999998579999996---------89899999---9
Q ss_pred HHHHHHHC--CCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 98654313--8652698158998899999967998999742663789
Q gi|254780975|r 160 QAKALIGK--RSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 160 ~l~~~~~~--~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
+.-++... .++.+++-||||.+|++.+.+.|+|++|.|. ++.++
T Consensus 225 ~av~~~~~~~~~~~lEaSGGI~~~ni~~yA~tGVD~i~tsa-~~~a~ 270 (284)
T PRK06096 225 EIAQIAPSLAPHCTLALTGGINLTTLKNYLDCGIRLFITSA-PYYAA 270 (284)
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEEECC-CCCCC
T ss_conf 99999872179779999899999999999980999998282-10678
No 157
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.57 E-value=0.0013 Score=43.44 Aligned_cols=94 Identities=15% Similarity=0.293 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC----CCCEE
Q ss_conf 1589998677649825998523334478998862-014028998306776533220135778998654313----86526
Q gi|254780975|r 98 HIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGK----RSISL 172 (224)
Q Consensus 98 ~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~----~~~~I 172 (224)
.+.+.++.+|+.....=+.+-.+ .++.....+. .+|.|++= .|.++.+.+ ..++.++ .++.+
T Consensus 169 ~~~~av~~~r~~~~~~~IeVEv~-~lee~~~a~~~g~d~I~LD---------n~s~e~~~~---~v~~l~~~~~~~~v~i 235 (279)
T PRK08385 169 PLEEAIRRAKEFSVYKVVEVEVE-SLEDALKAAKAGADIIMLD---------NMTPEEIRE---VIEALKELGLREKVKI 235 (279)
T ss_pred CHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEEC---------CCCHHHHHH---HHHHHHHHCCCCCEEE
T ss_conf 88999999998489961899709-8999999997699999984---------999999999---9999875076897899
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 98158998899999967998999742663789
Q gi|254780975|r 173 EVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 173 ~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
++-||||.+|+.++.+.|+|.+.+|+...+.+
T Consensus 236 eaSGGI~~~ni~~ya~tGVD~IS~g~lt~s~~ 267 (279)
T PRK08385 236 EVSGGITPETIAEYAKLDVDVISLGALTHSVR 267 (279)
T ss_pred EEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf 99789989999999855989998497776996
No 158
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=97.56 E-value=0.0031 Score=41.00 Aligned_cols=129 Identities=21% Similarity=0.274 Sum_probs=86.2
Q ss_pred CHHHHHHCCCCCCEEEEECCC--CCCHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCC--CC
Q ss_conf 033676404776079997066--4215899986776498-25998523334478998862-014028998306776--53
Q gi|254780975|r 75 DSHINIIADAGCDIITFHPES--SPHIRRSLRTIHAMGK-KTGVAINPETPVAILEDVID-EIDMILIMTVNPGFG--GQ 148 (224)
Q Consensus 75 ~~~i~~~~~~g~d~i~~H~E~--~~~~~~~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~--Gq 148 (224)
.+.++.+.++|+|.+++-... .....++++++|+..- .+-+|=|-.|+ +..+.++. -+|.|.+ ++-||-. -+
T Consensus 96 ~~r~~~l~~ag~d~i~IDvAhG~~~~~~~~ik~ir~~~p~~~IiaGNV~T~-e~a~~L~~~GaD~vkV-GiG~GS~CtTr 173 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTA-EAARDLIDAGADGVKV-GIGPGSICTTR 173 (325)
T ss_pred HHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCCCEEECCCCCH-HHHHHHHHCCCCEEEE-CCCCCCCCCCC
T ss_conf 999999997699899987000345889999999997689975686456689-9999998669989997-57577776660
Q ss_pred ---CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf ---3220135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r 149 ---QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 149 ---~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
.+--..+.-|.+..+...+++..|..||||+ ...+.+...+|||.+-+||.+-+..+
T Consensus 174 ~~tGvG~Pq~sai~~~a~~~~~~~v~iiaDGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~E 234 (325)
T cd00381 174 IVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDE 234 (325)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCEEEECCHHCCCCC
T ss_conf 1017887458899999997634498589448733107888887528878984621046666
No 159
>pfam03740 PdxJ Pyridoxal phosphate biosynthesis protein PdxJ. Members of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate.
Probab=97.56 E-value=0.0058 Score=39.24 Aligned_cols=193 Identities=17% Similarity=0.243 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCC-CCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCC
Q ss_conf 9999999999965998999973426345843-417899998641256416856788512033676404776079997066
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNI-SFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPES 95 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~-~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~ 95 (224)
=++.+....+.++|+|.+-+-.= |.- -+-.+.+..|++..+.++.+- ...-..+++...+..++.+|+=+|.
T Consensus 22 Pd~~~aa~~~~~~GadgITvHlR-----eDrRHI~d~Dv~~l~~~~~~~lNlE--~~~~~emi~ia~~~kP~qvtLVPE~ 94 (239)
T pfam03740 22 PDPVEAALIAERAGADGITVHLR-----EDRRHIQDRDVEVLKELIRTRFNIE--MAPTEEMLELALKTKPHQVTLVPEK 94 (239)
T ss_pred CCHHHHHHHHHHCCCCEEEECCC-----CCCCCCCHHHHHHHHHHCCCCEEEC--CCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf 89999999999839986895258-----8765452378999999728746775--6874999999998499858988899
Q ss_pred C---------------CCHHHHHHHHHHCCCEEEEEEECCCC-HHHHHHHHHHCCEEEEEEEE-CC-C-CCCCCCCHHHH
Q ss_conf 4---------------21589998677649825998523334-47899886201402899830-67-7-65332201357
Q gi|254780975|r 96 S---------------PHIRRSLRTIHAMGKKTGVAINPETP-VAILEDVIDEIDMILIMTVN-PG-F-GGQQLIESTIP 156 (224)
Q Consensus 96 ~---------------~~~~~~i~~i~~~g~k~Giai~p~T~-~~~i~~~l~~~D~vliM~V~-PG-~-~Gq~f~~~~l~ 156 (224)
- ..+..+++.+++.|+++.+-+.|+.. ++....+ -+|.|=+-|-. .- + .++...+..++
T Consensus 95 r~elTTegGld~~~~~~~L~~~i~~lk~~girvSlFIDpd~~~i~~a~~~--Gad~VElhTG~YA~a~~~~~~~~~~~l~ 172 (239)
T pfam03740 95 REEITTEGGLDVVAQLEKLKPAIRRLKNAGIRVSLFIDPDPEQIEAAKIV--GADRIELHTGPYADAHNDAEQAREELLE 172 (239)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHC--CCCEEEEECHHHHHHHHCCHHHHHHHHH
T ss_conf 98735688806334068999999998607853899707998999999980--9299985047788775131555799999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHC-CCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 789986543138652698158998899999967-99899974266378998999999999999
Q gi|254780975|r 157 KIRQAKALIGKRSISLEVDGGVTSRNIKSLVQA-GADLLVVGSSFFNQKGEISYAKRLNDLKK 218 (224)
Q Consensus 157 kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~-Gad~~V~Gsaif~~~d~~~~~~~l~~l~~ 218 (224)
++++..++-.+.++.+-.-.|.|.+|++.+.+. +.+-+-.|-+|....-.....+.++++++
T Consensus 173 ~i~~aa~~A~~lGL~VnAGHgLn~~Nl~~l~~i~~i~EvnIGHaiI~~al~~Gl~~aV~~~~~ 235 (239)
T pfam03740 173 RLAAGAALAFDLGLVVNAGHGLTYHNVKPVAKIPPIAELNIGHSLVAEALFVGLAKAVLEMKA 235 (239)
T ss_pred HHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999874985746789887669998528997488556999999999749999999999
No 160
>TIGR01334 modD modD protein; InterPro: IPR006242 The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). Their function is unknown. ; GO: 0016763 transferase activity transferring pentosyl groups.
Probab=97.56 E-value=0.00067 Score=45.24 Aligned_cols=99 Identities=13% Similarity=0.359 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 21589998677649825998523334478998862014028998306776533220135778998654313865269815
Q gi|254780975|r 97 PHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDG 176 (224)
Q Consensus 97 ~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG 176 (224)
.|+...+..+|..--+-=|++-.+|+.+.+.-+--.-|.+++ .+|-|+-+..+.++-++.+ +++.+.+-|
T Consensus 173 ~Dw~gai~rLkq~APE~KItvEadt~~qa~~~l~a~PDilQL---------dKFtpqQ~~~~~~~l~~~~-~~~tLa~aG 242 (277)
T TIGR01334 173 EDWSGAITRLKQQAPEKKITVEADTLKQALAVLRADPDILQL---------DKFTPQQVKELLELLKLLD-KIITLAVAG 242 (277)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEC---------CCCCHHHHHHHHHHHHHHC-CCCCEEEEC
T ss_conf 027899988774378772687405989999997448976632---------3688889999999999737-676534007
Q ss_pred CCCHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 89988999999679989997426637899
Q gi|254780975|r 177 GVTSRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 177 Gvn~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
|||.+|+.++.++|++.||-.-=-|-.|.
T Consensus 243 GiN~~n~a~Y~~~Gi~lfiTSAPYYAaP~ 271 (277)
T TIGR01334 243 GINKENVADYLELGIDLFITSAPYYAAPA 271 (277)
T ss_pred CCCHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 87877899998625204642575435887
No 161
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.54 E-value=0.0024 Score=41.73 Aligned_cols=172 Identities=19% Similarity=0.213 Sum_probs=114.6
Q ss_pred EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCC--CCEEEEEEEEEE--CCHHHHHH
Q ss_conf 88170632588999999999996599899997342634584341789999864125--641685678851--20336764
Q gi|254780975|r 6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYS--DSVFDCHLMISS--IDSHINII 81 (224)
Q Consensus 6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t--~~~~dvHLMv~~--P~~~i~~~ 81 (224)
+|.|=+-..|..+...-.+.|.++|+..+-+-. . .....+.++.+++.. +.| ++.+=+=. -...++..
T Consensus 17 ~iipVvr~~~~e~a~~~a~aL~~gGi~~iEiTl-r------t~~a~~~i~~l~~~~~~~~p-~~~iGaGTVl~~~~~~~a 88 (223)
T PRK07114 17 GMVPVFYHSDIEVAKKVVKACYDGGVRAFEFTN-R------GDFAHEVFGELVKYAAKECP-EMILGVGSIVDAATAALY 88 (223)
T ss_pred CEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEC-C------CCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHH
T ss_conf 979999828999999999999988998899958-8------96589999999999986689-808965518899999999
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 047760799970664215899986776498--259985233344789988620140289983067765332201357789
Q gi|254780975|r 82 ADAGCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIR 159 (224)
Q Consensus 82 ~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~ 159 (224)
.++|++.+.-..= -.++++++++++. -+|++ ||-|...-+-.-++.|=+. |+-.| -.+-++
T Consensus 89 ~~aGA~FiVSP~~----~~~v~~~~~~~~~~~iPGv~----TptEi~~A~~~G~~~vK~F---Pa~~~------G~~~lk 151 (223)
T PRK07114 89 IQLGANFVVGPLF----NEDIAKVCNRRKIPYSPGCG----SVSEIGFAEELGCEIVKIF---PGDVY------GPEFVK 151 (223)
T ss_pred HHCCCCEEECCCC----CHHHHHHHHHCCCCCCCCCC----CHHHHHHHHHCCCCEEEEC---CCCCC------CHHHHH
T ss_conf 9859989999999----99999999983997537319----9999999998799979889---73235------999999
Q ss_pred HHHHHHHCCCCEEEEECCC--CHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 9865431386526981589--98899999967998999742663789
Q gi|254780975|r 160 QAKALIGKRSISLEVDGGV--TSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 160 ~l~~~~~~~~~~I~vDGGv--n~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
.++.-++ +++++--||| |.+|+.++.++|+-.+..||.+|..+
T Consensus 152 al~~p~p--~~~~~PtGGV~ps~~N~~~~l~ag~~~vG~GS~l~~~~ 196 (223)
T PRK07114 152 AIKGPMP--WTSIMPTGGVEPTEENLKSWFKAGATCVGMGSKLFPKD 196 (223)
T ss_pred HHHCCCC--CCCEEECCCCCCCHHHHHHHHHCCCEEEEECHHHCCHH
T ss_conf 9846499--99688799988735509999968997999884638999
No 162
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=97.54 E-value=0.0084 Score=38.22 Aligned_cols=152 Identities=16% Similarity=0.251 Sum_probs=92.8
Q ss_pred HHHHHHH-CCCCEEEEEEEEE-ECCH---HHHHHCCCCCCEEEE-----ECCCC--------CC---HHHHHHHHHHCC-
Q ss_conf 9998641-2564168567885-1203---367640477607999-----70664--------21---589998677649-
Q gi|254780975|r 53 VIRSLRS-YSDSVFDCHLMIS-SIDS---HINIIADAGCDIITF-----HPESS--------PH---IRRSLRTIHAMG- 110 (224)
Q Consensus 53 ~i~~i~~-~t~~~~dvHLMv~-~P~~---~i~~~~~~g~d~i~~-----H~E~~--------~~---~~~~i~~i~~~g- 110 (224)
.++++++ +++.++=+-+|.. +++. +.+.+.++|+|.+-+ |.... .+ +.++.+++|+.-
T Consensus 89 ~i~~~k~~~P~~~vIaSI~g~~~~e~w~~la~~~e~~GaDalELNiSCPn~~~~~~~G~~~gq~pe~v~~i~~~Vk~~~~ 168 (413)
T PRK08318 89 EIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMVTRWVKRGSR 168 (413)
T ss_pred HHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 99998860789708999945878899999999866518877999555677666665551105799999999999885068
Q ss_pred CEEEEEEECC-CCHHHHHHHHHH--CCEEEEE-E----------------------EECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8259985233-344789988620--1402899-8----------------------306776533220135778998654
Q gi|254780975|r 111 KKTGVAINPE-TPVAILEDVIDE--IDMILIM-T----------------------VNPGFGGQQLIESTIPKIRQAKAL 164 (224)
Q Consensus 111 ~k~Giai~p~-T~~~~i~~~l~~--~D~vliM-~----------------------V~PG~~Gq~f~~~~l~kI~~l~~~ 164 (224)
.-+.+=|.|+ |.+..+..-+.. .|.|.+. | ..-|.+|....|-++..|.++.+.
T Consensus 169 iPV~vKLsPnvtdi~~iA~aa~~aGADgv~liNTi~~~~~iDid~~~~~p~i~~~~~~GGlSG~aikPiALr~V~~i~~~ 248 (413)
T PRK08318 169 LPVIAKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARD 248 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 85699828997528999999997699889998147865532022355302106777767666456769999999999863
Q ss_pred HHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 313865269815899-8899999967998999742663789
Q gi|254780975|r 165 IGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 165 ~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
....++.|.-=|||. .+.+-+..-+||+.+=+||++....
T Consensus 249 ~~~~~ipIiG~GGI~s~~Da~e~ilaGAsaVQv~Ta~~~~G 289 (413)
T PRK08318 249 PETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYG 289 (413)
T ss_pred CCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHCC
T ss_conf 46788377975685989999999982789216751014338
No 163
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.53 E-value=0.0012 Score=43.63 Aligned_cols=99 Identities=22% Similarity=0.349 Sum_probs=63.9
Q ss_pred ECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH-HHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 706642158999867764982599852333447899886-2014028998306776533220135778998654313865
Q gi|254780975|r 92 HPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVI-DEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSI 170 (224)
Q Consensus 92 H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l-~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~ 170 (224)
|......+.+.++..++.+...-+.+-.+ .++.+...+ ..+|.||+ .....+.+++.-++.+. ..
T Consensus 179 Hi~~~g~i~~av~~~~~~~~~~~IeVEve-~l~q~~~al~~g~d~ImL------------DNms~~~~~~av~~~~~-~~ 244 (288)
T PRK06978 179 HIAAAGGVGEALDAAFALNAGVPVQIEVE-TLAQLETALAHGAQSVLL------------DNFTLDMMREAVRVTAG-RA 244 (288)
T ss_pred HHHHCCCHHHHHHHHHHHCCCCCEEEEEC-CHHHHHHHHHCCCCEEEE------------CCCCHHHHHHHHHHHCC-CE
T ss_conf 68763889999999998189986599964-477789998489999995------------79999999999996479-67
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 2698158998899999967998999742663789
Q gi|254780975|r 171 SLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 171 ~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
.+++-||||.+|+..+...|+|.+.+|+-..+.+
T Consensus 245 ~lEaSGgI~~~ni~~yA~tGVD~IS~GaLThsa~ 278 (288)
T PRK06978 245 VLEVSGGVNFDTVRAFAETGVDRISIGALTKDVR 278 (288)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf 9999899999999999966999998885436998
No 164
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.53 E-value=0.0016 Score=42.79 Aligned_cols=91 Identities=16% Similarity=0.311 Sum_probs=56.9
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEC
Q ss_conf 89998677649825998523334478998862-014028998306776533220135778998654313--865269815
Q gi|254780975|r 100 RRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGK--RSISLEVDG 176 (224)
Q Consensus 100 ~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~--~~~~I~vDG 176 (224)
...+..+|......=+.+-.+| ++.+...++ .+|.||+ -.|.+..+.+ +.++... .++.+++-|
T Consensus 171 ~~~v~~~k~~~~~~kIeVEv~~-~~q~~~a~~~g~d~I~L---------Dn~s~~~ik~---~v~~~~~~~~~v~ieaSG 237 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDS-LEEALAAAEAGADILQL---------DKFSPEELAE---LVPKLRSLAPPVLLAAAG 237 (272)
T ss_pred HHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHCCCCEEEE---------CCCCHHHHHH---HHHHHHCCCCCEEEEEEC
T ss_conf 9999999862999708998399-99999998469999997---------7999999999---999974448876999989
Q ss_pred CCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 8998899999967998999742663789
Q gi|254780975|r 177 GVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 177 Gvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
|||.+|+..+.+.|+|.+ ++|+++.++
T Consensus 238 gI~~~ni~~yA~tGvD~I-s~~a~~~a~ 264 (272)
T cd01573 238 GINIENAAAYAAAGADIL-VTSAPYYAK 264 (272)
T ss_pred CCCHHHHHHHHHCCCCEE-ECCHHHCCC
T ss_conf 999999999997399999-808432776
No 165
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.52 E-value=0.00095 Score=44.28 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECH
Q ss_conf 344789988620-14028998306776533220135778998654313865269815899-8899999967998999742
Q gi|254780975|r 121 TPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGS 198 (224)
Q Consensus 121 T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gs 198 (224)
.|++....|-+. +|++.+.=.+ |-.|++-+...+ +++.+ +...+|++.|||+ .+.+..+.++||+.++.||
T Consensus 30 dP~~~a~~~~~~Ga~~lhvvDLd-aa~g~~~N~~~I---~~i~~---~~~~piqvGGGIrs~e~~~~~l~~Ga~kViigS 102 (231)
T PRK13586 30 DPLKIAEELYNEGYDSIHVVDLD-AAEGKGDNEEYI---KRICK---IGFSWIQVGGGIRDVEKAERLLSYDCSAIVMST 102 (231)
T ss_pred CHHHHHHHHHHCCCCEEEEEECC-CCCCCCCHHHHH---HHHHH---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEECH
T ss_conf 99999999998799989999671-568998439999---99997---459857985671769999999977998899768
Q ss_pred HHHCCCCHH
Q ss_conf 663789989
Q gi|254780975|r 199 SFFNQKGEI 207 (224)
Q Consensus 199 aif~~~d~~ 207 (224)
+.|++++..
T Consensus 103 ~a~~np~~~ 111 (231)
T PRK13586 103 LPFTNPDTF 111 (231)
T ss_pred HHHHCHHHH
T ss_conf 887695999
No 166
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.50 E-value=0.0014 Score=43.29 Aligned_cols=116 Identities=21% Similarity=0.279 Sum_probs=73.3
Q ss_pred CHHHHHHCC-CC---------CCEEEE---ECCCCCCHHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHH-HCCEEEEE
Q ss_conf 033676404-77---------607999---706642158999867764982-5998523334478998862-01402899
Q gi|254780975|r 75 DSHINIIAD-AG---------CDIITF---HPESSPHIRRSLRTIHAMGKK-TGVAINPETPVAILEDVID-EIDMILIM 139 (224)
Q Consensus 75 ~~~i~~~~~-~g---------~d~i~~---H~E~~~~~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~-~~D~vliM 139 (224)
.+++++++- +| .|.+-+ |......+.+.++.+|+.... .-+.+..+ .++.+...++ .+|.||+
T Consensus 146 lR~l~kyAV~~GGg~nHR~gLsd~vLIKdNHl~~~g~i~~av~~~r~~~~~~~kIeVEv~-~l~q~~~a~~~g~DiIlL- 223 (290)
T PRK06559 146 LRLFEKYAVRVGGGYNHRFNLSDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVE-SLAAAEEAAAAGVDIIML- 223 (290)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEC-CHHHHHHHHHCCCCEEEE-
T ss_conf 079999999965910536985010676521576515799999999985898766999856-899999998669999998-
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 83067765332201357789986543138652698158998899999967998999742663789
Q gi|254780975|r 140 TVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 140 ~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
-.|.+ +.+++.-++.+ .+..+++-||||.+|+.++.+.|+|.++.|+--.+.+
T Consensus 224 --------DNms~---~~i~~av~~i~-~~~~lEaSGgI~~~ni~~yA~tGVD~IS~g~Lthsa~ 276 (290)
T PRK06559 224 --------DNMSL---EQIEQAITLIA-GRSRIECSGNIDMTTISRFRGLAIDYVSSGSLTHSAK 276 (290)
T ss_pred --------CCCCH---HHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHCCCCEEECCHHCCCCC
T ss_conf --------79899---99999999857-9679999789989999999973999998882206996
No 167
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.50 E-value=0.007 Score=38.72 Aligned_cols=169 Identities=18% Similarity=0.243 Sum_probs=113.9
Q ss_pred EEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCC
Q ss_conf 1881706325889999999999965998999973426345843417899998641-256416856788512033676404
Q gi|254780975|r 5 IQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINIIAD 83 (224)
Q Consensus 5 ~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~ 83 (224)
-+|.|=+-..+..+.....+.+.++|+..+-+-.-. | -..+.++.+++ ++++.+=+. =|.+ ...++...+
T Consensus 4 ~~iiaVlr~~~~~~a~~~~~al~~~Gi~~iEitl~t----~---~a~~~i~~l~~~~~~~~iGaG-TV~~-~~~~~~a~~ 74 (190)
T cd00452 4 QPLVAVLRGDDAEDALALAEALIEGGIRAIEITLRT----P---GALEAIRALRKEFPEALIGAG-TVLT-PEQADAAIA 74 (190)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC----C---HHHHHHHHHHHHCCCCEEEEC-CCCC-HHHHHHHHH
T ss_conf 977999977999999999999998699889996788----0---299999999986898089652-3477-999999998
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 7760799970664215899986776498--25998523334478998862014028998306776533220135778998
Q gi|254780975|r 84 AGCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQA 161 (224)
Q Consensus 84 ~g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l 161 (224)
+|++.+.-..= + .++++++++++. -+|++ ||-|...-+-.-++.+-+ -|.... -.+-++.+
T Consensus 75 aGa~FivsP~~--~--~~v~~~a~~~~~~~iPGv~----TpsEi~~A~~~G~~~vK~---FPa~~~------G~~~lkal 137 (190)
T cd00452 75 AGAQFIVSPGL--D--PEVVKAANRAGIPLLPGVA----TPTEIMQALELGADIVKL---FPAEAV------GPAYIKAL 137 (190)
T ss_pred CCCCEEECCCC--C--HHHHHHHHHCCCCEECCCC----CHHHHHHHHHCCCCEEEE---CCCCCC------CHHHHHHH
T ss_conf 59989973779--9--9999999982996657879----999999999879998998---955114------99999998
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 6543138652698158998899999967998999742663
Q gi|254780975|r 162 KALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFF 201 (224)
Q Consensus 162 ~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif 201 (224)
+.-++ ++.++.=|||+.+|+....++|+.-+-.||.++
T Consensus 138 ~~pfp--~~~~~ptGGI~~~N~~~yl~~gv~avG~g~~l~ 175 (190)
T cd00452 138 KGPFP--QVRFMPTGGVSLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HCCCC--CCCEEEECCCCHHHHHHHHHCCCEEEEECHHCC
T ss_conf 55489--993899679998889999968998999541258
No 168
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=97.49 E-value=0.00033 Score=47.16 Aligned_cols=90 Identities=17% Similarity=0.379 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHH-H-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEE
Q ss_conf 3334478998862-0-14028998306776533220135778998654313865269815899-8899999967998999
Q gi|254780975|r 119 PETPVAILEDVID-E-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLV 195 (224)
Q Consensus 119 p~T~~~~i~~~l~-~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V 195 (224)
-+.|.+.-+.|-+ + ..++++-=.+--++|++-+...+++|.+ ..+.+|||=|||+ .+.+..|.+.|++.+|
T Consensus 27 ~d~P~~~A~~~~~~~GA~~iHvVDLDGA~~g~~~N~~~i~~I~~------~~~~~vQvGGGIRs~e~v~~ll~~Gv~RVI 100 (241)
T TIGR00007 27 SDDPVEAAKKWEEFQGAKRIHVVDLDGALEGGPVNLEVIKKIVE------ELGVPVQVGGGIRSLEDVEKLLDLGVDRVI 100 (241)
T ss_pred ECCHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCHHHHHHHHHH------HCCCCEEECCCCCCHHHHHHHHHCCCCEEE
T ss_conf 08989999999841697159998451000686200789999998------618517981751688999999973985799
Q ss_pred ECHHHHCCCCHHHHHHHHHHH
Q ss_conf 742663789989999999999
Q gi|254780975|r 196 VGSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 196 ~Gsaif~~~d~~~~~~~l~~l 216 (224)
.||+-|++++.. .+.+++.
T Consensus 101 ~GT~A~~~~~~v--~~~~~~~ 119 (241)
T TIGR00007 101 IGTAAVENPDLV--KELLKEY 119 (241)
T ss_pred EEEEEECCHHHH--HHHHHHH
T ss_conf 733221086999--9999984
No 169
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=97.49 E-value=0.004 Score=40.28 Aligned_cols=128 Identities=23% Similarity=0.303 Sum_probs=78.8
Q ss_pred HHHHHHCCCCCCEEEEECCC--CCCHHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCC--CCCC
Q ss_conf 33676404776079997066--42158999867764982-5998523334478998862-01402899830677--6533
Q gi|254780975|r 76 SHINIIADAGCDIITFHPES--SPHIRRSLRTIHAMGKK-TGVAINPETPVAILEDVID-EIDMILIMTVNPGF--GGQQ 149 (224)
Q Consensus 76 ~~i~~~~~~g~d~i~~H~E~--~~~~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~--~Gq~ 149 (224)
.-.+.+.++|+|.+++-.-+ ..+..++++++|+..-. .-+|=|-.|.- ....++. -+|.|.+ ++-||- .-+.
T Consensus 156 era~~Lv~AGvD~lvID~AhGhs~~~~e~ik~ik~~~p~v~VIaGNVaT~~-~a~~Li~aGAD~VkV-GiGpGsiCTTr~ 233 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKTIKNKYPNLDLIAGNIVTKE-AALDLINVGADCLKV-GIGPGSICTTRI 233 (404)
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHH-HHHHHHHHCCCEEEE-CCCCCCCCCCCC
T ss_conf 999999976999999968875217899999999976799616630305799-999999819899995-654787725665
Q ss_pred ---CCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf ---220135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r 150 ---LIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 150 ---f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
+--..+.-|.+..+.....++.|..||||+ .-.+.+.+.+|||.+-+||.+-+..+
T Consensus 234 v~GvGvPq~tAi~d~~~~a~~~~v~IIADGGI~~sGDi~KAlA~GAdaVMlGs~lAgt~E 293 (404)
T PRK06843 234 VAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKE 293 (404)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCCCEEEECCHHCCCCC
T ss_conf 458687489999999999605799788368746532799999718988886713136766
No 170
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.49 E-value=0.00091 Score=44.40 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=16.0
Q ss_pred EEEEC---CCCHHHHHHHHHC-CCCEEEECH
Q ss_conf 69815---8998899999967-998999742
Q gi|254780975|r 172 LEVDG---GVTSRNIKSLVQA-GADLLVVGS 198 (224)
Q Consensus 172 I~vDG---Gvn~~~i~~l~~~-Gad~~V~Gs 198 (224)
+.-|| |.+.+.+..+.+. ...++++|+
T Consensus 168 i~~dGt~~G~d~~ll~~i~~~~~~p~i~~GG 198 (234)
T cd04732 168 ISRDGTLSGPNFELYKELAAATGIPVIASGG 198 (234)
T ss_pred ECCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 4256653568999999998657998999818
No 171
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.48 E-value=0.00097 Score=44.20 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=15.1
Q ss_pred EEEEC---CCCHHHHHHHHHC-CCCEEEECH
Q ss_conf 69815---8998899999967-998999742
Q gi|254780975|r 172 LEVDG---GVTSRNIKSLVQA-GADLLVVGS 198 (224)
Q Consensus 172 I~vDG---Gvn~~~i~~l~~~-Gad~~V~Gs 198 (224)
|.-|| |.|.+.++.+.+. +..++.+|+
T Consensus 170 I~rDGtl~G~n~el~~~i~~~~~~pvIaSGG 200 (234)
T PRK13587 170 IAKDGKMSGPNFELTGQLVKATTIPVIASGG 200 (234)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 2665745579999999999767999999899
No 172
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=97.46 E-value=0.011 Score=37.47 Aligned_cols=125 Identities=20% Similarity=0.297 Sum_probs=82.4
Q ss_pred CHHHHHHCCCCCCEEEEECCCC--CCHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCC-----
Q ss_conf 0336764047760799970664--215899986776498-25998523334478998862-01402899830677-----
Q gi|254780975|r 75 DSHINIIADAGCDIITFHPESS--PHIRRSLRTIHAMGK-KTGVAINPETPVAILEDVID-EIDMILIMTVNPGF----- 145 (224)
Q Consensus 75 ~~~i~~~~~~g~d~i~~H~E~~--~~~~~~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~----- 145 (224)
..-.+.+.++|+|.|++-.-+- ....+.++++|+.-- -.-+|=|..|.- ..+.+++ -+|.|-+ ++-||-
T Consensus 225 ~eRa~~Lv~aGvDvivIDtAhGhs~~vi~~ik~ik~~~p~~~iIaGNVaT~e-~a~~Li~aGAD~vKV-GiGpGSiCTTR 302 (467)
T pfam00478 225 LERAEALVEAGVDVIVIDSAHGHSEYVLEMIKWIKKKYPDLDVIAGNVVTAE-AARELIDAGADAVKV-GIGPGSICTTR 302 (467)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHH-HHHHHHHHCCCEEEE-CCCCCCCCCCC
T ss_conf 9999999876998899734454418899999998740787737851005899-999999707775775-56688656564
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf ----6533220135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r 146 ----GGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 146 ----~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
-|-|. +.-|.+..+...++++.|+.||||+ .-.+.+...+|||.+-+||.+-+.+.
T Consensus 303 ~v~GvG~PQ----~tAv~~~a~~a~~~~vpiIADGGi~~sGDi~KAlaaGAd~VMlGsllAGt~E 363 (467)
T pfam00478 303 EVAGVGRPQ----LTAVYEVADAARKLGVPVIADGGIRYSGDIAKALAAGASAVMLGSLLAGTEE 363 (467)
T ss_pred CCCCCCCCH----HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHCCCCC
T ss_conf 203667750----8799999999865698799447623304899998728988987722257777
No 173
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.39 E-value=0.014 Score=36.86 Aligned_cols=192 Identities=16% Similarity=0.170 Sum_probs=126.2
Q ss_pred ECHHH--HCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf 81706--3258899999999999659989999734263458434178999986412564168567885120336764047
Q gi|254780975|r 7 IVPSI--LAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADA 84 (224)
Q Consensus 7 IspSi--l~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ 84 (224)
-|||- +..++. ..+..+..+++|++-+-+ ..|..| |.=+++.++.+|+.+++|+=.-=-+-+| ..+.+-..+
T Consensus 50 aSPSkG~i~~~~d-p~~iA~~Y~~~GA~aiSV-LTe~~~---F~Gs~~~L~~v~~~v~lPiLrKDFIid~-~QI~ea~~~ 123 (247)
T PRK13957 50 KSPSAGELRADYH-PVQIAKTYETLGASAISV-LTDQSY---FGGSLEDLKSVSSELKIPVLRKDFILDE-IQIREARAF 123 (247)
T ss_pred CCCCCCCCCCCCC-HHHHHHHHHHCCCCEEEE-CCCCCC---CCCCHHHHHHHHHHCCCCEEEEEEECCH-HHHHHHHHC
T ss_conf 8999887578899-999999999779928998-278566---7998999999998579984741120649-999999973
Q ss_pred CCCEEEEECCCCC--CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 7607999706642--15899986776498259985233344789988620140289983067765332201357789986
Q gi|254780975|r 85 GCDIITFHPESSP--HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAK 162 (224)
Q Consensus 85 g~d~i~~H~E~~~--~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~ 162 (224)
|||.|..=+.... ++.+.++.+++.|..+=+=++-...++....+ ..+ +.+||-.-= ..|.- .++...++.
T Consensus 124 GADaILLIaa~L~~~~l~~l~~~A~~lGle~LvEvH~~~El~~al~~--~~~---iIGINNRnL-~tf~v-d~~~~~~l~ 196 (247)
T PRK13957 124 GASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDC--GAE---IIGINTRDL-DTFQI-HQNLVEEVA 196 (247)
T ss_pred CCCEEHHHHHCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHC--CCC---EEEEECCCC-CCCCC-CHHHHHHHH
T ss_conf 99851268850899999999999998388156255899999999848--998---898745773-21463-988999998
Q ss_pred HHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf 54313865269815899-8899999967998999742663789989999999
Q gi|254780975|r 163 ALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL 213 (224)
Q Consensus 163 ~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l 213 (224)
.++|. +..+-.-.||+ .+.+..+.+. +|.+-+|+++-+++|+..+.+.|
T Consensus 197 ~~ip~-~~~~VsESGI~~~~di~~l~~~-~da~LIGeslMk~~d~~~a~~~L 246 (247)
T PRK13957 197 AFLPP-NIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEKKDIRKAWLSL 246 (247)
T ss_pred HHCCC-CCEEEECCCCCCHHHHHHHHHH-CCEEEECHHHHCCCCHHHHHHHH
T ss_conf 43899-9879967899999999999973-99999886775699999999975
No 174
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.36 E-value=0.008 Score=38.34 Aligned_cols=161 Identities=15% Similarity=0.238 Sum_probs=95.6
Q ss_pred CCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECC-----HH-----HHHHCCCCCCEEEE-ECCCC---CCHHHHHHH
Q ss_conf 263458434178999986412564168567885120-----33-----67640477607999-70664---215899986
Q gi|254780975|r 40 DGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSID-----SH-----INIIADAGCDIITF-HPESS---PHIRRSLRT 105 (224)
Q Consensus 40 Dg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~-----~~-----i~~~~~~g~d~i~~-H~E~~---~~~~~~i~~ 105 (224)
|=.++|.++ .+..+.+.++++ +..+|.. .| .+.+.++|++++.+ |.|-- .+..+.++.
T Consensus 38 ~v~v~Pp~~----~L~~v~~~~~i~----v~AQn~~~~~~GA~TGevS~~mL~d~G~~~vIlGHSERR~~~~E~~~~v~~ 109 (223)
T PRK04302 38 TIAVAPQAL----DLYRVAEEVEIP----VYAQHVDAVGPGAHTGHILPEAVKDAGAVGTLLNHSERRLRLADIEAAVER 109 (223)
T ss_pred EEEEECCHH----HHHHHHHHCCCE----EEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCHHHHHCCCHHHHHHH
T ss_conf 899979999----999999736980----995438898786862633099999859999995653310003227999999
Q ss_pred HHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEEC----CCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCC
Q ss_conf 77649825998523334478998862014028998306----77653322013577899865431--3865269815899
Q gi|254780975|r 106 IHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNP----GFGGQQLIESTIPKIRQAKALIG--KRSISLEVDGGVT 179 (224)
Q Consensus 106 i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~P----G~~Gq~f~~~~l~kI~~l~~~~~--~~~~~I~vDGGvn 179 (224)
+.+.|..+-+.+ ++.. ..... ..++-. +..-+| | .|+.-.+...+.|+++.+... ..++.|---||||
T Consensus 110 a~~~gl~~I~Cv--~~~~-~~~~~-~~l~~~-~IAYEPvWAIG-TG~~as~~~~e~i~~~~~~~~~~~~~i~ILYGGsV~ 183 (223)
T PRK04302 110 AKELGLESVVCT--NNPE-TSAAA-AALGPD-AVAVEPPELIG-TGIPVSKAKPEVVTGTVEAVRKVNPDVKVLCGAGIS 183 (223)
T ss_pred HHHCCCEEEEEC--CCHH-HHHHH-HHCCCC-EEEECCHHHHC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 998699489972--7399-88899-865899-89988889844-898766258999999999999647997589978468
Q ss_pred HHH-HHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
Q ss_conf 889-99999679989997426637899899999999
Q gi|254780975|r 180 SRN-IKSLVQAGADLLVVGSSFFNQKGEISYAKRLN 214 (224)
Q Consensus 180 ~~~-i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~ 214 (224)
..| ...+.+.|+|-+-+|||..+++||....+.|-
T Consensus 184 ~~n~~~~~~~~~vDG~LVGgAsLkA~Dp~~~l~~l~ 219 (223)
T PRK04302 184 TGEDVKAALELGADGVLLASGVVKAKDPEAALRDLV 219 (223)
T ss_pred HHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHH
T ss_conf 788999974689985897625666879999999999
No 175
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.35 E-value=0.0029 Score=41.19 Aligned_cols=115 Identities=21% Similarity=0.343 Sum_probs=71.2
Q ss_pred HHHHHHCC-CC---------CCEEEE---ECCCCCCHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHH-HCCEEEEEE
Q ss_conf 33676404-77---------607999---70664215899986776498-25998523334478998862-014028998
Q gi|254780975|r 76 SHINIIAD-AG---------CDIITF---HPESSPHIRRSLRTIHAMGK-KTGVAINPETPVAILEDVID-EIDMILIMT 140 (224)
Q Consensus 76 ~~i~~~~~-~g---------~d~i~~---H~E~~~~~~~~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~-~~D~vliM~ 140 (224)
+++++++- +| .|.+-+ |......+.+.++..|+... ..-|.+-.+| ++.+...++ .+|.||+
T Consensus 142 R~leKyAV~~GGg~nHR~gL~d~iLIKdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~s-l~q~~~al~~g~d~ImL-- 218 (281)
T PRK06106 142 RALEKYAVRAGGGSNHRFGLDDAVLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDT-LEQLEEALELGVDAVLL-- 218 (281)
T ss_pred HHHHHHHHHHCCEEECCCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECC-HHHHHHHHHCCCCEEEE--
T ss_conf 599999999679851058887537777879874388999999999757997249999699-99999997279989998--
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 3067765332201357789986543138652698158998899999967998999742663789
Q gi|254780975|r 141 VNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 141 V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
-.| ..+.+++..++.++ ...+++-||||.+|+..+.+.|+|.+.+|+-.-+.+
T Consensus 219 -------DNm---sp~~~~~av~~~~~-~~~~EaSGgI~~~ni~~yA~tGvD~IS~g~lthsa~ 271 (281)
T PRK06106 219 -------DNM---SPDTLREAVAIVAG-RAITEASGRITPETAPAIAASGVDLISVGWLTHSAP 271 (281)
T ss_pred -------CCC---CHHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf -------799---99999999998568-468999789999999999973999998384326997
No 176
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=97.34 E-value=0.015 Score=36.55 Aligned_cols=187 Identities=19% Similarity=0.265 Sum_probs=101.9
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEE
Q ss_conf 63258899999999999659989999734263458434178999986412564168567885120336764047760799
Q gi|254780975|r 11 ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIIT 90 (224)
Q Consensus 11 il~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~ 90 (224)
++--|....++.++.+.++|.|.+=+-=-++ +.++ ...++.+++.+++|+ =|-.-+|.. ...++|.+.
T Consensus 13 liDPdk~~~~~~~~~~~~sgtDaI~VGGS~~----~~~~-d~~v~~ik~~~~lPv--iLfPg~~~~-----vs~~aDail 80 (231)
T pfam01884 13 LLDPDETNPEEIIEIVAESGTDAIMIGGSTG----GVTL-DNVVRLIKKVYGLPI--ILFPGNPSG-----VSRYADAIF 80 (231)
T ss_pred EECCCCCCCHHHHHHHHHCCCCEEEECCCCC----CCCH-HHHHHHHHHHCCCCE--EEECCCHHH-----CCCCCCEEE
T ss_conf 8789999969999999974999999889888----8568-999999998539998--995698676-----586778466
Q ss_pred EECCC-CCCHHH-------HHHHHHHCCCEE----EEEEECCCC--------------HHHHHHHH--HHCCEEEEEEEE
Q ss_conf 97066-421589-------998677649825----998523334--------------47899886--201402899830
Q gi|254780975|r 91 FHPES-SPHIRR-------SLRTIHAMGKKT----GVAINPETP--------------VAILEDVI--DEIDMILIMTVN 142 (224)
Q Consensus 91 ~H~E~-~~~~~~-------~i~~i~~~g~k~----Giai~p~T~--------------~~~i~~~l--~~~D~vliM~V~ 142 (224)
|..=- ..++.. ....+++.+.++ =+.++|++. .+....+. .+.=..-++=.+
T Consensus 81 f~sllNs~np~~lig~qv~aa~~~~~~~~e~ip~gYivi~~g~~v~~vs~a~~i~~~~~~iaa~~alA~~~~g~~~iYLE 160 (231)
T pfam01884 81 FMSLLNSANPDWIVGAHALGAQTVKKIGEEIIPMGYIVVEPDSKVGWVGEARPIPRNKPDIAAYYALAAKLLGMRIFYLE 160 (231)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEECCEECCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 56410489905676279988998765050053036788759971366436623799959999999999997098189997
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
Q ss_conf 6776533220135778998654313865269815899-88999999679989997426637899899999999
Q gi|254780975|r 143 PGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLN 214 (224)
Q Consensus 143 PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~ 214 (224)
-|-+-..-.+.. -++..+++ .+..+.|-|||+ .+.+.++.++|||.+|.|+.+..++|.....+.+.
T Consensus 161 aGSGa~~~vp~~--vi~~~~~~---~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~d~~~~~~~~~ 228 (231)
T pfam01884 161 AGSGAPGPVPEE--VIAVKKVL---DDARLIVGGGIKSGEKAKEMARAGADVIVTGNVIEEKGDREMAIDAIL 228 (231)
T ss_pred CCCCCCCCCCHH--HHHHHHCC---CCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCEEECCCHHHHHHHHH
T ss_conf 589999998999--99999646---897689969979999999999779999997971441776999999998
No 177
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.31 E-value=0.0031 Score=41.01 Aligned_cols=115 Identities=22% Similarity=0.290 Sum_probs=71.5
Q ss_pred CHHHHHHCC-CC---------CCEEEE---ECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEE
Q ss_conf 033676404-77---------607999---7066421589998677649825998523334478998862-014028998
Q gi|254780975|r 75 DSHINIIAD-AG---------CDIITF---HPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMT 140 (224)
Q Consensus 75 ~~~i~~~~~-~g---------~d~i~~---H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~ 140 (224)
.+++++|+- +| .|.+-+ |..+...+.+.++..++.....-+.+-.+ .++.+...++ .+|.||+
T Consensus 158 lR~leKyAV~~GGG~nHR~gL~D~iLIKdNHi~~~g~i~~av~~ar~~~~~~~IeVEv~-~l~q~~eal~~gaDiIlL-- 234 (296)
T PRK09016 158 LRSALKYAVLCGGGANHRLGLSDAFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVE-NLDELDQALKAGADIIML-- 234 (296)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHCCHHHHHHHHHHHCCCCCEEEEEC-CHHHHHHHHHCCCCEEEE--
T ss_conf 40999999996791233587610799855605651789999999998689985899968-789999999659999998--
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 306776533220135778998654313865269815899889999996799899974266378
Q gi|254780975|r 141 VNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQ 203 (224)
Q Consensus 141 V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~ 203 (224)
.....+.+++.-++... ...+++-||||.+|+..+.+.|+|.+-+|+---+.
T Consensus 235 ----------DN~s~~~~k~av~~~~~-~~~lEaSGgI~l~ni~~yA~tGVD~IS~GaLThs~ 286 (296)
T PRK09016 235 ----------DNFTTEQMREAVKRTNG-KAALEVSGNVTLETLREFAETGVDFISVGALTKHV 286 (296)
T ss_pred ----------CCCCHHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHHHCCCCEEECCHHHCCC
T ss_conf ----------89899999999997479-67999878998999999997299999888766699
No 178
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=97.28 E-value=0.018 Score=36.11 Aligned_cols=166 Identities=17% Similarity=0.186 Sum_probs=98.7
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEE-C-------------CHHHHHHCCC
Q ss_conf 9999999996599899997342634584341789999864125641685678851-2-------------0336764047
Q gi|254780975|r 19 LGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISS-I-------------DSHINIIADA 84 (224)
Q Consensus 19 l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~-P-------------~~~i~~~~~~ 84 (224)
++..+ ...++|+|.+.+ +..-..-.+|=++..++..++..++ .||.|+-. + .+-+..+.++
T Consensus 11 ~e~a~-~A~~~GAdRIEL--Cs~L~~GGlTPS~g~i~~~~~~~~i--PV~vMIRPR~GdF~Ys~~E~~~M~~dI~~~~~~ 85 (248)
T PRK11572 11 MECAL-TAQQNGADRIEL--CAAPKEGGLTPSLGVLKSVRERVTI--PVHPIIRPRGGDFCYSDGEFAAMLEDIRTVREL 85 (248)
T ss_pred HHHHH-HHHHCCCCEEEE--CCCCCCCCCCCCHHHHHHHHHHCCC--CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99999-999839998997--4787668979999999999986699--738999426998867989999999999999986
Q ss_pred CCCEEEEECCC---CCCHHHHHHHHHHCC---CEEEEEEEC-CCCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHH
Q ss_conf 76079997066---421589998677649---825998523-3344789988620-140289983067765332201357
Q gi|254780975|r 85 GCDIITFHPES---SPHIRRSLRTIHAMG---KKTGVAINP-ETPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIP 156 (224)
Q Consensus 85 g~d~i~~H~E~---~~~~~~~i~~i~~~g---~k~Giai~p-~T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~ 156 (224)
|++=+.|=+=+ .-|....-+++...+ +-+-=|+.- ..|.+.++.+++. +|+||- -+|++-...-++
T Consensus 86 Ga~GvV~G~L~~dg~iD~~~~~~Li~~a~~l~vTFHRAfD~~~dp~~ale~Li~lG~~rILT------SG~~~~A~~G~~ 159 (248)
T PRK11572 86 GFPGLVTGVLDVDGHVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLNALKNLAELGVARILT------SGQQSDAEQGLS 159 (248)
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECHHHCCCCHHHHHHHHHHCCCCEEEC------CCCCCCHHHHHH
T ss_conf 99967996688999849999999999748980798620221499999999999759998988------999787778899
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 78998654313865269815899889999996799899974
Q gi|254780975|r 157 KIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVG 197 (224)
Q Consensus 157 kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~G 197 (224)
.++++.+..+ +..|..-||||.+|++.+.+.|++-+=+.
T Consensus 160 ~L~~L~~~a~--~~iIm~GgGV~~~Ni~~~~~tG~~eiH~S 198 (248)
T PRK11572 160 LIMELIAQGD--APIIMAGAGVRAENLQKFLDAGVREVHSS 198 (248)
T ss_pred HHHHHHHHCC--CCEEEECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 9999998449--96898789989999999997597789735
No 179
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=97.28 E-value=0.0087 Score=38.13 Aligned_cols=178 Identities=19% Similarity=0.262 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEC--CEECCCCCCCHHHHHHHHHCCC-CEEEEEEEEEE-----C--CHHHHHHCCCCCC
Q ss_conf 99999999996599899997342--6345843417899998641256-41685678851-----2--0336764047760
Q gi|254780975|r 18 RLGEEISNITKAGAKQIHFDVMD--GCFVPNISFGADVIRSLRSYSD-SVFDCHLMISS-----I--DSHINIIADAGCD 87 (224)
Q Consensus 18 ~l~~~i~~l~~~~~d~iHiDImD--g~fvpn~~~~~~~i~~i~~~t~-~~~dvHLMv~~-----P--~~~i~~~~~~g~d 87 (224)
.+++..+.+.+..+..+= |+| |..+.=+|. ..+...+.++. ..-+-+|+|-- + ..-.+.+.++|+|
T Consensus 166 sl~eA~~lL~~~kiekLp--vVd~~~~L~gLiT~--kDi~k~~~~~~a~D~~grL~VgAAVGv~~d~~eR~~aLv~AGvD 241 (479)
T PRK07807 166 DPRKAFDLLEAAPVKVAP--VVDADGRLAGVLTR--TGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEAGVD 241 (479)
T ss_pred CHHHHHHHHHHCCCCCCE--EECCCCEEEEEEEE--EHHHHCCCCCCCCCHHHCEEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 879999999753523113--77569929999996--11645446887778223456788725784589999999976998
Q ss_pred EEEEECCCC--CCHHHHHHHHHHCCCEEE-EEEECCCCHHHHHHHHHH-CCEEEEEEEECCC---------CCCCCCCHH
Q ss_conf 799970664--215899986776498259-985233344789988620-1402899830677---------653322013
Q gi|254780975|r 88 IITFHPESS--PHIRRSLRTIHAMGKKTG-VAINPETPVAILEDVIDE-IDMILIMTVNPGF---------GGQQLIEST 154 (224)
Q Consensus 88 ~i~~H~E~~--~~~~~~i~~i~~~g~k~G-iai~p~T~~~~i~~~l~~-~D~vliM~V~PG~---------~Gq~f~~~~ 154 (224)
.+++-.-+- ....+.++++|+..-.+- +|=|-.|. +-.+.+++- +|.|- .++-||- -|-+ .
T Consensus 242 vlvIDtAHGhS~~vi~~vk~iK~~~p~~~viaGNvaT~-~~a~~Li~aGad~ik-vGiG~GSiCtTr~v~gvG~p----q 315 (479)
T PRK07807 242 VLVIDTAHGHQEKMLEAIRAVRALDPGVPLVAGNVVTA-EGTRDLVEAGADIVK-VGVGPGAMCTTRMMTGVGRP----Q 315 (479)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHH-HHHHHHHHCCCCEEE-CCCCCCCCEECCCCCCCCCC----H
T ss_conf 99975457664899999999984089885787432029-999999973999763-15557832434632377886----0
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 5778998654313865269815899-88999999679989997426637899
Q gi|254780975|r 155 IPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 155 l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
+.-|.+..+...+.++.|..||||+ .-.+.+...+|||.+-.||.+-+.+.
T Consensus 316 ~tAi~~~a~~a~~~gvpiIADGGIr~sGdi~KAla~GA~~VMlGsllAGt~E 367 (479)
T PRK07807 316 FSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYE 367 (479)
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 9999999999875699789458725346799998728987888830157777
No 180
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.27 E-value=0.018 Score=36.06 Aligned_cols=196 Identities=16% Similarity=0.138 Sum_probs=126.2
Q ss_pred ECHH--HHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf 8170--63258899999999999659989999734263458434178999986412564168567885120336764047
Q gi|254780975|r 7 IVPS--ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADA 84 (224)
Q Consensus 7 IspS--il~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ 84 (224)
=||| +++.++ +..+.-+..+++|+.-+-+ ..|..| |.=+.+.+..+|+..++|+=.-=-+-+|.. |-+-...
T Consensus 59 aSPSkG~I~~~~-dp~~iA~~Ye~~GA~aISV-LTe~~~---F~Gsl~dL~~vr~~v~lPvLRKDFIvD~yQ-I~EAr~~ 132 (695)
T PRK13802 59 ASPSKGHLSDIP-DPAALAREYEKGGASAISV-LTEGRK---FLGSLDDFDKVRAAVHIPVLRKDFIVTDYQ-IFEARAH 132 (695)
T ss_pred CCCCCCCCCCCC-CHHHHHHHHHHCCCEEEEE-ECCCCC---CCCCHHHHHHHHHHCCCCEEECCEECCHHH-HHHHHHC
T ss_conf 999878768889-9999999999879849998-258676---798999999999858998570233063999-9999982
Q ss_pred CCCEEEEECCCCCC--HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 76079997066421--5899986776498259985233344789988620140289983067765332201357789986
Q gi|254780975|r 85 GCDIITFHPESSPH--IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAK 162 (224)
Q Consensus 85 g~d~i~~H~E~~~~--~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~ 162 (224)
|+|.|-+-....++ +.+.++..++.|+.+=+=++-. ++++.-+.. ---+.+||-..= ..| +--++.-.++.
T Consensus 133 GADaILLIva~L~~~~L~~l~~~a~~LGm~~LVEVH~~---~El~rAl~~--ga~iIGINnRnL-~Tf-~vD~~~~~~La 205 (695)
T PRK13802 133 GADLVLLIVAALDDAQLKHLLDLAHELNMTVLVETHTR---EEIERARKA--GAKVIGINARNL-KNL-KVDVNKYNELA 205 (695)
T ss_pred CCCHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHC--CCCEEEEECCCC-CCC-EECHHHHHHHH
T ss_conf 87889999986699999999999998699179997899---999999847--999899878988-642-28779999998
Q ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
Q ss_conf 54313865269815899889999996799899974266378998999999999
Q gi|254780975|r 163 ALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLND 215 (224)
Q Consensus 163 ~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~ 215 (224)
.++|+.-+.+.--|==+.+.+..+..+|||.+.+|-++..++||..+...+..
T Consensus 206 p~iP~~~v~VAESGI~~~~Dv~~~a~aGadAvLVGEalvta~dP~~~v~~l~~ 258 (695)
T PRK13802 206 ADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADNHELAVERLVK 258 (695)
T ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCHHHHHHHHHH
T ss_conf 46899857995689999899999997799999978034158987999999997
No 181
>PRK10128 putative aldolase; Provisional
Probab=97.24 E-value=0.02 Score=35.83 Aligned_cols=181 Identities=14% Similarity=0.197 Sum_probs=111.8
Q ss_pred HHHHHHCCCCEEEEEEECCEECCCCCCCHH----HHHHHHHCCCCEEEEEEEEEECC-HHHHHHCCCCCC-EEEEECCCC
Q ss_conf 999996599899997342634584341789----99986412564168567885120-336764047760-799970664
Q gi|254780975|r 23 ISNITKAGAKQIHFDVMDGCFVPNISFGAD----VIRSLRSYSDSVFDCHLMISSID-SHINIIADAGCD-IITFHPESS 96 (224)
Q Consensus 23 i~~l~~~~~d~iHiDImDg~fvpn~~~~~~----~i~~i~~~t~~~~dvHLMv~~P~-~~i~~~~~~g~d-~i~~H~E~~ 96 (224)
.+.+-..|+||+-+|.--|.| +.+ .+..++.....|+ |- +-.+. .++....+.|++ .+.-|.++.
T Consensus 15 aEi~a~~G~D~v~iD~EHg~~------~~~~~~~~~~a~~~~~~~pi-VR--v~~~~~~~i~r~LD~Ga~GiivP~V~ta 85 (250)
T PRK10128 15 AEIAATSGYDWLLIDGEHAPN------TIQDLYHQLQAVAPYASQPV-IR--PVEGSKALIKQVLDIGAQTLLIPMVDTA 85 (250)
T ss_pred HHHHHCCCCCEEEEECCCCCC------CHHHHHHHHHHHHHCCCCEE-EE--CCCCCHHHHHHHHHCCCCEEEECCCCCH
T ss_conf 999980898999981778999------99999999999986599719-98--5899988999998378987785474869
Q ss_pred CCHHHHHHHHHH-----CCCEEE----------------------EEEECCC--CHHHHHHHHH--HCCEEEEE----EE
Q ss_conf 215899986776-----498259----------------------9852333--4478998862--01402899----83
Q gi|254780975|r 97 PHIRRSLRTIHA-----MGKKTG----------------------VAINPET--PVAILEDVID--EIDMILIM----TV 141 (224)
Q Consensus 97 ~~~~~~i~~i~~-----~g~k~G----------------------iai~p~T--~~~~i~~~l~--~~D~vliM----~V 141 (224)
++..+.++.+|- .|.-.+ +...-+| -++.++.++. -+|.+.+= +.
T Consensus 86 e~A~~~V~~~kYpP~G~Rg~g~~~~r~~~~g~~~~y~~~~n~~~~vi~qIEt~~av~nldeI~av~GvD~~fiGp~DLs~ 165 (250)
T PRK10128 86 EQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSA 165 (250)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCCEEEECHHHHHH
T ss_conf 99999999851699999988864232244577479999986413665441558999879998588998889988488998
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHH--HHCCCCHHHHHHHHHHHH
Q ss_conf 0677653322013577899865431386526981589988999999679989997426--637899899999999999
Q gi|254780975|r 142 NPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSS--FFNQKGEISYAKRLNDLK 217 (224)
Q Consensus 142 ~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsa--if~~~d~~~~~~~l~~l~ 217 (224)
.-|+-||...|...+-++++.+...+.+....+= ..+.+.+..+.+.|++.++.|+= ++.+ .....+..+|
T Consensus 166 slG~pg~~~~p~v~~ai~~v~~~~~~~gk~~G~~-~~~~~~a~~~~~~G~~~v~~g~D~~ll~~----a~~~~l~~~r 238 (250)
T PRK10128 166 SLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFL-AVAPDMAQQCLAWGANFVAVGVDTMLYSD----ALDQRLAMFK 238 (250)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-CCCHHHHHHHHHCCCCEEEEHHHHHHHHH----HHHHHHHHHH
T ss_conf 6599999998699999999999999869976883-79999999999769999986579999999----9999999985
No 182
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=97.24 E-value=0.02 Score=35.80 Aligned_cols=194 Identities=15% Similarity=0.265 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCEECCCC-CCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECC
Q ss_conf 89999999999965998999973426345843-41789999864125641685678851203367640477607999706
Q gi|254780975|r 16 FSRLGEEISNITKAGAKQIHFDVMDGCFVPNI-SFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPE 94 (224)
Q Consensus 16 ~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~-~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E 94 (224)
+=++.+....+.++|+|.+-+-.= |.- -..++.+..|++..+.|+.+- ...-..+++...+..++.+|+=+|
T Consensus 20 ~Pd~~~~a~~~~~~GadgITvHlR-----~DrRHI~~~Dv~~l~~~~~~~lNlE--~a~~~emi~ia~~~kP~~vtLVPe 92 (234)
T cd00003 20 YPDPVEAALLAEKAGADGITVHLR-----EDRRHIQDRDVRLLRELVRTELNLE--MAPTEEMLEIALEVKPHQVTLVPE 92 (234)
T ss_pred CCCHHHHHHHHHHCCCCEEEECCC-----CCCCCCCCHHHHHHHHHCCCCEEEC--CCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 999999999999839985895248-----8766675457999998658554661--279389999999849987898788
Q ss_pred CC---------------CCHHHHHHHHHHCCCEEEEEEECCCC-HHHHHHHHHHCCEEEEEEEE-CCCCCCCCCCHHHHH
Q ss_conf 64---------------21589998677649825998523334-47899886201402899830-677653322013577
Q gi|254780975|r 95 SS---------------PHIRRSLRTIHAMGKKTGVAINPETP-VAILEDVIDEIDMILIMTVN-PGFGGQQLIESTIPK 157 (224)
Q Consensus 95 ~~---------------~~~~~~i~~i~~~g~k~Giai~p~T~-~~~i~~~l~~~D~vliM~V~-PG~~Gq~f~~~~l~k 157 (224)
.- +.+..+++.+++.|+++.+=+.|+.. ++....+ -+|.|=+-|-. .-..+++-....++|
T Consensus 93 ~r~elTTegGld~~~~~~~L~~~i~~lk~~~IrvSLFIDPd~~qi~~a~~~--Gad~VElhTG~Ya~a~~~~~~~~el~~ 170 (234)
T cd00003 93 KREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPDPEQIEAAKEV--GADRVELHTGPYANAYDKAEREAELER 170 (234)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHH--CCCEEEEECHHHHHHCCCHHHHHHHHH
T ss_conf 878641788926654788999999999865982799727987899999984--939999824787863481039999999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHC-CCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 89986543138652698158998899999967-99899974266378998999999999999
Q gi|254780975|r 158 IRQAKALIGKRSISLEVDGGVTSRNIKSLVQA-GADLLVVGSSFFNQKGEISYAKRLNDLKK 218 (224)
Q Consensus 158 I~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~-Gad~~V~Gsaif~~~d~~~~~~~l~~l~~ 218 (224)
+++..++-.+.++.+-+--|.|.+|++.+.+. +.+-+-.|-+|....-.....+.++++++
T Consensus 171 i~~aa~~A~~lGL~VnAGHgLn~~Nl~~i~~ip~i~EvnIGHaiI~esl~~Gl~~aV~~~~~ 232 (234)
T cd00003 171 IAKAAKLARELGLGVNAGHGLNYENVKPIAKIPGIAELNIGHAIISRALFVGLEEAVREMKD 232 (234)
T ss_pred HHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999985987854789887679998558997288557999999999749999999997
No 183
>PRK06256 biotin synthase; Validated
Probab=97.23 E-value=0.021 Score=35.73 Aligned_cols=188 Identities=16% Similarity=0.191 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEE
Q ss_conf 88999999999996599899997342634584341--7899998641256416856788512033676404776079997
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFH 92 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H 92 (224)
+.-.+.++.+...+.|+..+++= .=|+--+...| -.+.++.||+.+.+.+.+-+=.- ...-+..+.++|+|++.-.
T Consensus 91 ~~eeI~~~a~~a~~~G~~~~~lv-tsg~~~~~~~~e~v~~~i~~Ik~~~~l~i~~slG~l-~~e~~~~LkeAGvd~y~~n 168 (325)
T PRK06256 91 DIEEIVEAAKEAIENGAGRFCIV-ASGRGPSGREVDQVIEAVKAIKEETDLEICACLGLL-TEEQAERLKEAGVDRYNHN 168 (325)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEE-EECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC-CHHHHHHHHHCCCCEECCC
T ss_conf 99999999999998699889998-604589767899999999998622893688734889-9999999998699888666
Q ss_pred CCCCCC-------------HHHHHHHHHHCCCEE--EEEEECCCCHHHHHHHHHH-----CCEEEEEEEE--CC--CCCC
Q ss_conf 066421-------------589998677649825--9985233344789988620-----1402899830--67--7653
Q gi|254780975|r 93 PESSPH-------------IRRSLRTIHAMGKKT--GVAINPETPVAILEDVIDE-----IDMILIMTVN--PG--FGGQ 148 (224)
Q Consensus 93 ~E~~~~-------------~~~~i~~i~~~g~k~--Giai~p~T~~~~i~~~l~~-----~D~vliM~V~--PG--~~Gq 148 (224)
.|+... -.++++.+++.|..+ |.-+..+-..+.....+-. +|.|=++--. || +.++
T Consensus 169 lETs~~~f~~i~~tht~~~Rl~ti~~a~~aGi~vcsG~i~GlGEt~edrve~l~~Lr~l~~~sipin~l~P~~gTpl~~~ 248 (325)
T PRK06256 169 LETSRSYFPNVVTTHTYEDRVDTCEMVKAAGIEPCSGGIIGMGETLEDRAEHAFFLKELDADSIPINFLNPIKGTPLEDL 248 (325)
T ss_pred CCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCCCCC
T ss_conf 44068763886899889999999999998599646643766899989999999999719998895467010699866889
Q ss_pred CC-CC-HHHHHHHHHHHHHHCCCCEEEEECC--CCHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf 32-20-1357789986543138652698158--99889999996799899974266378998
Q gi|254780975|r 149 QL-IE-STIPKIRQAKALIGKRSISLEVDGG--VTSRNIKSLVQAGADLLVVGSSFFNQKGE 206 (224)
Q Consensus 149 ~f-~~-~~l~kI~~l~~~~~~~~~~I~vDGG--vn~~~i~~l~~~Gad~~V~Gsaif~~~d~ 206 (224)
+. .+ ..+.-|.-+|=+.|+.. |-+-|| ++......+.-+||+.+..|.++=..-.+
T Consensus 249 ~~l~~~e~lr~iAi~Rl~~P~~~--Ir~agGr~~~~~~~~~~~~~gan~~~~G~~lTt~g~~ 308 (325)
T PRK06256 249 PELTPLECLKTIAIFRLINPDKE--IRIAGGREIALRSLQPLALKGANSIFVGNYLTTLGQP 308 (325)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCCCCHHHHHHHHHHCHHHEECCCCCCCCCC
T ss_conf 99899999999999999789954--8970785522556799998617351466653789978
No 184
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=97.20 E-value=0.022 Score=35.53 Aligned_cols=172 Identities=15% Similarity=0.111 Sum_probs=106.8
Q ss_pred HHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECC-HHHHHHCCCCCCEE-EEECCCCCCHH
Q ss_conf 99999659989999734263458434178999986412564168567885120-33676404776079-99706642158
Q gi|254780975|r 23 ISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSID-SHINIIADAGCDII-TFHPESSPHIR 100 (224)
Q Consensus 23 i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~-~~i~~~~~~g~d~i-~~H~E~~~~~~ 100 (224)
.+.+-..|+||+-+|.--|.|-.... .+.+..++..-..|+ | =|-.+. .++....++|++-| .-|.++.++..
T Consensus 26 ~Ei~a~~G~D~v~iD~EHg~~~~~~~--~~~~~a~~~~g~~~i-V--Rvp~~~~~~i~~~LD~Ga~GiivP~V~t~eea~ 100 (249)
T TIGR03239 26 TEVLGLAGFDWLLLDGEHAPNDVLTF--IPQLMALKGSASAPV-V--RPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAE 100 (249)
T ss_pred HHHHHCCCCCEEEEECCCCCCCHHHH--HHHHHHHHHCCCCCE-E--ECCCCCHHHHHHHHCCCCCEEEECCCCCHHHHH
T ss_conf 99997189699998104489999999--999999984699848-9--799998789999970899878951745599999
Q ss_pred HHHHHHHH-----CC---------------------CEEEEEEECCCC--HHHHHHHHH--HCCEEEEE----EEECCCC
Q ss_conf 99986776-----49---------------------825998523334--478998862--01402899----8306776
Q gi|254780975|r 101 RSLRTIHA-----MG---------------------KKTGVAINPETP--VAILEDVID--EIDMILIM----TVNPGFG 146 (224)
Q Consensus 101 ~~i~~i~~-----~g---------------------~k~Giai~p~T~--~~~i~~~l~--~~D~vliM----~V~PG~~ 146 (224)
++++.+|- .| ..+-+.+.-+|. ++.++.++. -+|.|.+= +..-|+-
T Consensus 101 ~~v~a~kypP~G~Rg~~~~~r~~~yg~~~~y~~~~n~~~~vi~qIEt~~av~nldeI~av~GvD~ifiGP~DLs~slG~~ 180 (249)
T TIGR03239 101 RAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHL 180 (249)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCCEEEECHHHHHHHCCCC
T ss_conf 99997344999998887663211247706999998644278999658899987999967899888998848999876999
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 533220135778998654313865269815899889999996799899974266
Q gi|254780975|r 147 GQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSF 200 (224)
Q Consensus 147 Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai 200 (224)
||.-.|.+.+.++++.+...+.+....+= .-+.+.++.+.+.|++.++.||=+
T Consensus 181 g~~~~p~v~~ai~~v~~~~~~~gk~~Gi~-~~~~~~~~~~~~~G~~~i~~g~D~ 233 (249)
T TIGR03239 181 GNPNHPDVQKAIRHIFDRAAAHGKPCGIL-APVEADARRYLEWGATFVAVGSDL 233 (249)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEE-CCCHHHHHHHHHCCCCEEEEHHHH
T ss_conf 99999799999999999999859966982-799999999998699899966899
No 185
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.11 E-value=0.006 Score=39.17 Aligned_cols=92 Identities=23% Similarity=0.473 Sum_probs=58.4
Q ss_pred HHHHHHHHHHC-CCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 58999867764-9825998523334478998862-014028998306776533220135778998654313865269815
Q gi|254780975|r 99 IRRSLRTIHAM-GKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDG 176 (224)
Q Consensus 99 ~~~~i~~i~~~-g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG 176 (224)
+.+.+...|+. ..+.=+.+-.+ .++.+...++ .+|.||+ -.| ..+.+++.-++.+. ...+++-|
T Consensus 179 ~~~~i~~~r~~~~~~~~IeVEv~-~l~~~~~a~~~g~D~ImL---------Dnm---s~~~i~~av~~i~~-~~~lEaSG 244 (281)
T PRK06543 179 LTEALRHVRAQLGHTTHVEVEVD-RLDQIEPVLAAGVDTIML---------DNF---TLDQLREGVELIDG-RAIVEASG 244 (281)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEC-CHHHHHHHHHCCCCEEEE---------CCC---CHHHHHHHHHHHCC-CEEEEEEC
T ss_conf 99999999975899870999966-788799999749999997---------798---99999999997579-37999988
Q ss_pred CCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 8998899999967998999742663789
Q gi|254780975|r 177 GVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 177 Gvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
|||.+|+..+.+.|+|.++.|+-..+.+
T Consensus 245 gI~~~ni~~yA~tGVD~IS~galt~s~~ 272 (281)
T PRK06543 245 NVSLNTVPAIASTGVDVISVGALTHSVR 272 (281)
T ss_pred CCCHHHHHHHHHCCCCEEECCHHCCCCC
T ss_conf 9999999999973999998382006997
No 186
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0052 Score=39.55 Aligned_cols=79 Identities=15% Similarity=0.368 Sum_probs=38.2
Q ss_pred CCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECH
Q ss_conf 34478998862-014028998306776533220135778998654313865269815899-8899999967998999742
Q gi|254780975|r 121 TPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGS 198 (224)
Q Consensus 121 T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gs 198 (224)
.|++....+.+ ...++.+.-.+--|.|++-+...+.+|.+ ..+.++||-|||| .+.+..+.++|++++++||
T Consensus 32 ~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~------~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt 105 (241)
T COG0106 32 DPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILE------ATDVPVQVGGGIRSLEDVEALLDAGVARVIIGT 105 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHH------HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf 98999999998099589886266321587554999999998------579977840876789999999987998899803
Q ss_pred HHHCCCC
Q ss_conf 6637899
Q gi|254780975|r 199 SFFNQKG 205 (224)
Q Consensus 199 aif~~~d 205 (224)
+-+++++
T Consensus 106 ~av~~p~ 112 (241)
T COG0106 106 AAVKNPD 112 (241)
T ss_pred CEECCHH
T ss_conf 1216999
No 187
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase; InterPro: IPR014732 Orotidine 5'-phosphate decarboxylase (OMPdecase) (4.1.1.23 from EC) , catalyzes the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional proteins. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme..
Probab=97.00 E-value=0.0036 Score=40.55 Aligned_cols=194 Identities=16% Similarity=0.245 Sum_probs=110.9
Q ss_pred HHCCCHHHHHHHHHHHHHCC--CC--E--EEEEEECCEECCCCCCC-HHHHHHHHHCC---CCEEEEEEEEEE-CC---H
Q ss_conf 63258899999999999659--98--9--99973426345843417-89999864125---641685678851-20---3
Q gi|254780975|r 11 ILAADFSRLGEEISNITKAG--AK--Q--IHFDVMDGCFVPNISFG-ADVIRSLRSYS---DSVFDCHLMISS-ID---S 76 (224)
Q Consensus 11 il~~d~~~l~~~i~~l~~~~--~d--~--iHiDImDg~fvpn~~~~-~~~i~~i~~~t---~~~~dvHLMv~~-P~---~ 76 (224)
+++.|...-++.++.+++.+ ++ + +|+|+.+ ..+ ..++++|++.. |+++=..+=.-| |. .
T Consensus 2 ~vALD~~~~~e~l~~a~~~~~~~~v~~~Kvg~~l~~-------~~~~~~~~~~L~~~~~KHNf~if~D~Kf~DIpnTv~~ 74 (233)
T TIGR01740 2 IVALDVTTKEEALKLADSLGPEIDVLVIKVGIDLLL-------SGGYEKIIEELAKLNKKHNFLIFLDLKFADIPNTVKL 74 (233)
T ss_pred EEECCCCCHHHHHHHHHHHCCEEEEEEEECCHHHHH-------CCCCHHHHHHHHHHHCCCCCEEEECCEECCCCHHHHH
T ss_conf 686238998999999975046277777751423333-------2784889999999745688203212031366156899
Q ss_pred HHHH---HCCCCCCEEEEECCCCCC-HHHHHHHHHHCCC-EEE-EEEECCCCHHH---HHHHHHH-CCEEEEEEEECCCC
Q ss_conf 3676---404776079997066421-5899986776498-259-98523334478---9988620-14028998306776
Q gi|254780975|r 77 HINI---IADAGCDIITFHPESSPH-IRRSLRTIHAMGK-KTG-VAINPETPVAI---LEDVIDE-IDMILIMTVNPGFG 146 (224)
Q Consensus 77 ~i~~---~~~~g~d~i~~H~E~~~~-~~~~i~~i~~~g~-k~G-iai~p~T~~~~---i~~~l~~-~D~vliM~V~PG~~ 146 (224)
.++. +.+.|++++++|.=+-.. +++..+..++.+. +.+ +++.-=|+... -..|.++ .+.++=|+..-+..
T Consensus 75 ~~~~G~y~~~~~~~~~~vH~~~G~~~~~~~~~~a~~~~~~~~~ll~V~~ltS~g~~d~~~~~~~~~~~~~~~~A~~~~~~ 154 (233)
T TIGR01740 75 QYESGVYKIKQGADMVNVHGVAGKESVEAAKEAASEFSTSGRGLLAVTELTSKGSEDLELEYGEDTEEKVVEIAKEAKEF 154 (233)
T ss_pred HHHCCCCEEECCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 97508641217745899720150789999998702566668737999875179813389998888999999998616665
Q ss_pred CCCCCCHHHHHHHHHHHHHHC---------CCCEEE--EECC--CCHHHHHHHHHCCCCEEEECHHHHC-CCCHHHHHHH
Q ss_conf 533220135778998654313---------865269--8158--9988999999679989997426637-8998999999
Q gi|254780975|r 147 GQQLIESTIPKIRQAKALIGK---------RSISLE--VDGG--VTSRNIKSLVQAGADLLVVGSSFFN-QKGEISYAKR 212 (224)
Q Consensus 147 Gq~f~~~~l~kI~~l~~~~~~---------~~~~I~--vDGG--vn~~~i~~l~~~Gad~~V~Gsaif~-~~d~~~~~~~ 212 (224)
| ......+..+.++.+.. .++... -|++ -..-|...+.+.|+|.+|+|..||. ++||.+++++
T Consensus 155 G---l~G~~~~~~~~~~~~~~~G~~~~~~tPGir~~~~g~~~dQ~~~~~~~~a~~~g~D~iiVGR~Iy~~~~dP~~aa~~ 231 (233)
T TIGR01740 155 G---LIGPVCSAEEAKEIRKITGSDFLILTPGIRLASKGDADDQQRVVTLEDAIEAGADVIIVGRGIYKKAEDPVEAAKK 231 (233)
T ss_pred C---CCCEECCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCHHCCCCCHHHHHHH
T ss_conf 3---3210114677865632058870786077148988878886443778999860499899878210138786899986
Q ss_pred HH
Q ss_conf 99
Q gi|254780975|r 213 LN 214 (224)
Q Consensus 213 l~ 214 (224)
++
T Consensus 232 i~ 233 (233)
T TIGR01740 232 IR 233 (233)
T ss_pred CC
T ss_conf 09
No 188
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=97.00 E-value=0.034 Score=34.32 Aligned_cols=171 Identities=15% Similarity=0.138 Sum_probs=105.1
Q ss_pred HHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEEC-CHHHHHHCCCCCCE-EEEECCCCCCHH
Q ss_conf 9999965998999973426345843417899998641256416856788512-03367640477607-999706642158
Q gi|254780975|r 23 ISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSI-DSHINIIADAGCDI-ITFHPESSPHIR 100 (224)
Q Consensus 23 i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P-~~~i~~~~~~g~d~-i~~H~E~~~~~~ 100 (224)
.+.+-..|+||+-+|.--|.|-.... ...+..++.....|+ |- |-.+ ..++....+.|++- +.-|.|+.++..
T Consensus 33 ~Ei~a~~G~Dfv~iD~EHg~~~~~~l--~~~i~a~~~~~~~~l-VR--vp~~~~~~i~r~LD~Ga~GvivP~V~s~eea~ 107 (256)
T PRK10558 33 TEVLGLAGFDWLVLDGEHAPNDVSTF--IPQLMALKGSASAPV-VR--VPTNEPVIIKRLLDIGFYNFLIPFVETAEEAR 107 (256)
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHH--HHHHHHHHHCCCCCE-EE--CCCCCHHHHHHHHCCCCCEEEECCCCCHHHHH
T ss_conf 99997289899998377899999999--999999971799748-96--78898899999970798755614769999999
Q ss_pred HHHHHHHH-----CC---------------------CEEEEEEECCC--CHHHHHHHHH--HCCEEEEE----EEECCCC
Q ss_conf 99986776-----49---------------------82599852333--4478998862--01402899----8306776
Q gi|254780975|r 101 RSLRTIHA-----MG---------------------KKTGVAINPET--PVAILEDVID--EIDMILIM----TVNPGFG 146 (224)
Q Consensus 101 ~~i~~i~~-----~g---------------------~k~Giai~p~T--~~~~i~~~l~--~~D~vliM----~V~PG~~ 146 (224)
+.++.+|= .| -.+-+.+.-+| -++.++.++. -+|.|.+= +..-|.-
T Consensus 108 ~~V~a~~YpP~G~RG~~~~~ra~~yg~~~~y~~~~n~~~~vi~qIEt~~av~nldeI~av~GvD~ifiGp~DLs~slG~~ 187 (256)
T PRK10558 108 RAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHL 187 (256)
T ss_pred HHHHHEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCCEEEECHHHHHHHCCCC
T ss_conf 99987454899986877761343047607999997643478888536789988999967899888998858999865999
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 53322013577899865431386526981589988999999679989997426
Q gi|254780975|r 147 GQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSS 199 (224)
Q Consensus 147 Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsa 199 (224)
||.-.|.+.+.++++.+...+.+....+= .-+.+.++.+.+.|++.++.||=
T Consensus 188 g~~~~pev~~ai~~v~~~~~~~gk~~G~~-~~~~~~a~~~~~~G~~~i~~g~D 239 (256)
T PRK10558 188 GNASHPDVQKAIQHIFARAKAHGKPSGIL-APVEADARRYLEWGATFVAVGSD 239 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEE-CCCHHHHHHHHHCCCCEEEEHHH
T ss_conf 99999799999999999999859987993-69999999999769989997279
No 189
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.93 E-value=0.021 Score=35.64 Aligned_cols=124 Identities=17% Similarity=0.230 Sum_probs=76.6
Q ss_pred HHHHCC--CCCCEEEEECCCC--CCHHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCC------
Q ss_conf 676404--7760799970664--2158999867764982-5998523334478998862-01402899830677------
Q gi|254780975|r 78 INIIAD--AGCDIITFHPESS--PHIRRSLRTIHAMGKK-TGVAINPETPVAILEDVID-EIDMILIMTVNPGF------ 145 (224)
Q Consensus 78 i~~~~~--~g~d~i~~H~E~~--~~~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~------ 145 (224)
+..+.+ .+++.+++-.-+. ....++++++|+..-. +-+|=|-.|+ +..+.++. -+|.|.+ ++-||-
T Consensus 113 ~~~i~~~~~~~~~i~iDvA~G~~~~~~~~i~~ik~~~~~~~iiaGNvaT~-e~~~~L~~~GaD~vkV-GIG~Gs~CtTR~ 190 (347)
T PRK05096 113 TKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTG-EMVEELILSGADIVKV-GIGPGSVCTTRV 190 (347)
T ss_pred HHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHH-HHHHHHHHCCCCEEEE-CCCCCCCCCCCC
T ss_conf 99999528998989997798620889999999998789980881431239-9999999737889997-677875430452
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf -6533220135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r 146 -GGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 146 -~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
.|.. -..+.-|.+..+.....+..|..|||++ ...+.+...+|||.+-+||.+-+.++
T Consensus 191 ~tGvG--~Pq~sai~~c~~~~~~~~~~iiaDGGi~~~gDi~KAla~GAd~VM~G~~lAg~~E 250 (347)
T PRK05096 191 KTGVG--YPQLSAVIECADAAHGLGGMIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEE 250 (347)
T ss_pred CCCCC--CHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 23567--3037899999998605799489568847504799998738988986731037777
No 190
>pfam01180 DHO_dh Dihydroorotate dehydrogenase.
Probab=96.92 E-value=0.015 Score=36.65 Aligned_cols=154 Identities=16% Similarity=0.241 Sum_probs=87.2
Q ss_pred CCEEEEEEEEEECCHHHHHHCC--CCCCEEEEECCC-----------CCC-HHHHHHHHHHCCCE-EEEEEECCCC-HHH
Q ss_conf 6416856788512033676404--776079997066-----------421-58999867764982-5998523334-478
Q gi|254780975|r 62 DSVFDCHLMISSIDSHINIIAD--AGCDIITFHPES-----------SPH-IRRSLRTIHAMGKK-TGVAINPETP-VAI 125 (224)
Q Consensus 62 ~~~~dvHLMv~~P~~~i~~~~~--~g~d~i~~H~E~-----------~~~-~~~~i~~i~~~g~k-~Giai~p~T~-~~~ 125 (224)
++|+-+-++-.+++.|.+.+.. ..+|++.+..-+ .++ ...+.+++++.-.. +.+-+.|+++ ...
T Consensus 93 ~~~vi~si~g~~~~d~~~~~~~~~~~ad~iElNiScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~ 172 (290)
T pfam01180 93 PLGIILSKAGSTVEDYVEVARKIGPFADYLELNVSCPNTPGLRALQTDPELAAILLKVVKEVSKVPVLVKLAPDLTDIVI 172 (290)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf 85378624669999999999999743588999985368876133404298999999998750478738983898774689
Q ss_pred HHHHHHH-----CCEEEE-------EE------------EECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-H
Q ss_conf 9988620-----140289-------98------------306776533220135778998654313865269815899-8
Q gi|254780975|r 126 LEDVIDE-----IDMILI-------MT------------VNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-S 180 (224)
Q Consensus 126 i~~~l~~-----~D~vli-------M~------------V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~ 180 (224)
+...... ++.+.. +. ..-|.+|.+..+.++..|+++++... ..+.|.-=|||. .
T Consensus 173 ~~~a~~~~~a~gv~gi~~~nt~~~~~~~d~~~~~~~~~~~~GGlSG~~i~~~al~~v~~~~~~~~-~~ipIig~GGI~~~ 251 (290)
T pfam01180 173 IDIADVAAGEDGLTGINATNTTVRGMRIDLKTESPILANGTGGLSGPAIKPIALKVIRELYQRVG-PEIPIIGVGGIFTG 251 (290)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCCH
T ss_conf 99999971837768999658734655555556663125678885760678999999999999708-99749998894999
Q ss_pred HHHHHHHHCCCCEEEECHHH-HCCCCHHHHHHHHHHHHH
Q ss_conf 89999996799899974266-378998999999999999
Q gi|254780975|r 181 RNIKSLVQAGADLLVVGSSF-FNQKGEISYAKRLNDLKK 218 (224)
Q Consensus 181 ~~i~~l~~~Gad~~V~Gsai-f~~~d~~~~~~~l~~l~~ 218 (224)
+.+-+...+||+.+=++|++ |..+.. ..+-+++|++
T Consensus 252 ~da~e~i~aGA~~VQv~Tal~~~Gp~~--i~~i~~~L~~ 288 (290)
T pfam01180 252 EDALEKILAGASAVQIGTALIFGGPFI--FPKIIDELPE 288 (290)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHCCCHH--HHHHHHHHHH
T ss_conf 999999983997999858998419179--9999999997
No 191
>PRK08649 inositol-5-monophosphate dehydrogenase; Validated
Probab=96.87 E-value=0.021 Score=35.62 Aligned_cols=130 Identities=17% Similarity=0.222 Sum_probs=81.6
Q ss_pred ECCHHHHHHCCCCCCEEEEE-----CCC---CCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH-CCEEEEEEEEC
Q ss_conf 12033676404776079997-----066---4215899986776498259985233344789988620-14028998306
Q gi|254780975|r 73 SIDSHINIIADAGCDIITFH-----PES---SPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDE-IDMILIMTVNP 143 (224)
Q Consensus 73 ~P~~~i~~~~~~g~d~i~~H-----~E~---~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~-~D~vliM~V~P 143 (224)
+-.+..+.+.++|+|.++++ .++ .....+..+++++.... -+|=|-.|. +-.+.+++. +|.|-+ ++-|
T Consensus 141 ~~~~~~~~Lv~aGvDvlvId~~vvd~aH~~~~~~~l~~~~~~~~~~v~-vIaGNVaT~-e~a~~Li~aGADaVKV-GIGp 217 (368)
T PRK08649 141 NAQKLGPTVVEAGADLFVIQGTVVSAEHVSEGGEPLNLKEFIYELDVP-VVVGGCVTY-TTALHLMRTGAAGVLV-GIGP 217 (368)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEEEEEHHHCCCCHHHHHHHHHCCCCCC-EEEECCCCH-HHHHHHHHCCCCEEEE-CCCC
T ss_conf 389999999974998899841475402220320356566431237987-897344699-9999999779989994-5668
Q ss_pred CC---------CCCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 77---------6533220135778998654313---865269815899-88999999679989997426637899
Q gi|254780975|r 144 GF---------GGQQLIESTIPKIRQAKALIGK---RSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 144 G~---------~Gq~f~~~~l~kI~~l~~~~~~---~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
|- -|-|....+.+=.+..|++.++ ++++|..||||+ .-.+.+.+.+|||.+-+||-+-+.+.
T Consensus 218 GSICTTRvVaGvGvPQltAI~~~a~a~~~y~~~~~g~~VpvIADGGIr~sGDi~KAlaaGA~~VMlGsllAGt~E 292 (368)
T PRK08649 218 GAACTSRGVLGIGVPMATAIADCAAARRDYLDETGGRYVHVIADGGIVTSGDICKAIACGADAVMLGSPLARAAE 292 (368)
T ss_pred CCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 877566340125721699999999998865565268546489568858641899998728998987731047666
No 192
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.87 E-value=0.044 Score=33.64 Aligned_cols=146 Identities=14% Similarity=0.248 Sum_probs=108.5
Q ss_pred CHHHHHHHHHC--CCCEEEEEEEEEECC----HHHH-HHCCCCCCEEEEECCCC----------CCHHHHHHHHHHCCCE
Q ss_conf 78999986412--564168567885120----3367-64047760799970664----------2158999867764982
Q gi|254780975|r 50 GADVIRSLRSY--SDSVFDCHLMISSID----SHIN-IIADAGCDIITFHPESS----------PHIRRSLRTIHAMGKK 112 (224)
Q Consensus 50 ~~~~i~~i~~~--t~~~~dvHLMv~~P~----~~i~-~~~~~g~d~i~~H~E~~----------~~~~~~i~~i~~~g~k 112 (224)
+|+.|+.|..| +++.++.-+- -||- .++. .+...|-|+|.|.-++- +-+.+.....+++|..
T Consensus 232 pp~EIe~I~~yll~ek~l~tfiK-~NpTlLGy~~~r~~ld~~G~dyi~~~~~~F~~Dlq~~~a~~ml~rL~~la~~~~l~ 310 (1032)
T PRK09853 232 PPHEIEAICRYMLEEKGLNTFVK-LNPTLLGYKRVREILDVCGFDYIGLKEESFDHDLQLTDAVEMLERLMALAKEKSLG 310 (1032)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEE-ECCCCCCHHHHHHHHHHCCCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCE
T ss_conf 98999999999985057766885-17420058999999986098437417565333343567999999999999972965
Q ss_pred EEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCC
Q ss_conf 59985233344789988620140289983067765332201357789986543138652698158998899999967998
Q gi|254780975|r 113 TGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGAD 192 (224)
Q Consensus 113 ~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad 192 (224)
+|+-|...-|+..-..-||.-. +-| ||.++-|=+++-..++++-++. .+.|.--||....|+.++.++|..
T Consensus 311 fGvKltNT~~v~~~~~~lP~~e--MYm------SGr~L~plsi~~a~~l~~~f~g-~l~iSysgGad~~Ni~~i~~~gi~ 381 (1032)
T PRK09853 311 FGVKLTNTLGTINNKGELPGEE--MYM------SGRALFPLSINLAAKLSRAFDG-KLPISYSGGASQFNIRDIFDTGIR 381 (1032)
T ss_pred EEEEEECCEEEEECCCCCCCCC--CCC------CCCCCCHHHHHHHHHHHHHHCC-CCCEEEECCCCHHHHHHHHHCCCC
T ss_conf 6588704300561268799633--203------5885620158999999997099-751366467542259999972985
Q ss_pred EEEECHHHHCCCC
Q ss_conf 9997426637899
Q gi|254780975|r 193 LLVVGSSFFNQKG 205 (224)
Q Consensus 193 ~~V~Gsaif~~~d 205 (224)
-+.+-|.|.+-..
T Consensus 382 piT~at~lLkpgG 394 (1032)
T PRK09853 382 PITMATDLLKPGG 394 (1032)
T ss_pred EEEEEECCCCCCC
T ss_conf 0033102168762
No 193
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=96.86 E-value=0.034 Score=34.35 Aligned_cols=181 Identities=22% Similarity=0.323 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEE-----EEEEEEE---C--C--HHHHHHCCC
Q ss_conf 99999999999659989999734263458434178999986412564168-----5678851---2--0--336764047
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD-----CHLMISS---I--D--SHINIIADA 84 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~d-----vHLMv~~---P--~--~~i~~~~~~ 84 (224)
-++++..+.|.+..++.|=+==-+++-|.=+|. +.+..-+++++--.| =-|||-= | . +=+..+.++
T Consensus 173 i~~e~A~~~L~~~r~ekLpvVd~~~~lVgLiT~--~Di~~~~~~P~A~kd~vG~~GrL~VgAAvg~r~~D~~R~~~L~~A 250 (476)
T TIGR01302 173 IDLEEALKVLHKHRIEKLPVVDKDGELVGLITV--KDIVKRREFPHASKDTVGENGRLIVGAAVGTREDDLERAEALVEA 250 (476)
T ss_pred CCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEH--HHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 778999999886086504788278988999864--478898638887788748886089998846898618999999965
Q ss_pred CCCEEEEECCCCC--CHHHHHHHHHHCCCEEEEEE-ECCCCHHHHHHHHH-HCCEEEEEEEECC---------CCCCCCC
Q ss_conf 7607999706642--15899986776498259985-23334478998862-0140289983067---------7653322
Q gi|254780975|r 85 GCDIITFHPESSP--HIRRSLRTIHAMGKKTGVAI-NPETPVAILEDVID-EIDMILIMTVNPG---------FGGQQLI 151 (224)
Q Consensus 85 g~d~i~~H~E~~~--~~~~~i~~i~~~g~k~Giai-~p~T~~~~i~~~l~-~~D~vliM~V~PG---------~~Gq~f~ 151 (224)
|+|.|++=.=.-+ ...+.++|+|+.....=+.- |=.|. +.-+.+++ .+|-|=| ++=|| -.|-|-.
T Consensus 251 GvDv~viDsshGhs~~vl~~ik~~k~~Yp~~~iiaGNVaT~-~~a~~LI~AgADg~rV-GiGpGSICTTr~V~gVGvPQ~ 328 (476)
T TIGR01302 251 GVDVIVIDSSHGHSIYVLDSIKKIKKTYPDLDIIAGNVATA-EQAKALIDAGADGLRV-GIGPGSICTTRIVAGVGVPQI 328 (476)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCH-HHHHHHHHCCCCEEEE-CCCCCCCCEEEEEEECCCHHH
T ss_conf 96589981665453789999999986388057994344117-8898898528887898-368898110015651276268
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 0135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r 152 ESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 152 ~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
.+.-++.+ ...+.++.+..||||+ .-+|.+.+.+|||.+=+||.|-+.+.
T Consensus 329 -TAv~~Va~---~A~~~Gi~VIADGGIr~SGDivKAlAaGA~aVMlGslLAGT~E 379 (476)
T TIGR01302 329 -TAVYDVAE---YAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTE 379 (476)
T ss_pred -HHHHHHHH---HHHHCCCEEEECCCCCCHHHHHHHHHHCCCEEHHCCCCCCCCC
T ss_conf -89999999---9972799099837756255899999816772202342101633
No 194
>PRK00957 methionine synthase; Provisional
Probab=96.81 E-value=0.048 Score=33.37 Aligned_cols=91 Identities=23% Similarity=0.295 Sum_probs=57.0
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCEECCCCCCCH-------HHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf 999999999659989999734263458434178-------9999864125641685678851203367640477607999
Q gi|254780975|r 19 LGEEISNITKAGAKQIHFDVMDGCFVPNISFGA-------DVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITF 91 (224)
Q Consensus 19 l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~-------~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~ 91 (224)
+.++++.+.++|+++|++|= |.++.++ +.++.+-+--+.++-+|+. -+-...++.+.+..+|.+.+
T Consensus 148 l~~Ei~~l~~aG~~~IQiDE------P~l~~~~~~~~~~~~~i~~~~~~~~~~~~~HiC-g~y~~i~~~l~~~~vd~~~l 220 (307)
T PRK00957 148 LAKEALALQKAGAAMIQIDE------PILSTGAYDLEVAKKAIDIIAKGLNIPVAMHVC-GDVGNIFDDLLKFNVDILDH 220 (307)
T ss_pred HHHHHHHHHHCCCCEEEECC------HHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEC-CCHHHHHHHHHHCCCCEEEE
T ss_conf 99999999974998899675------577638013899999999974146745999966-77377788998589998999
Q ss_pred ECCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 7066421589998677649825998
Q gi|254780975|r 92 HPESSPHIRRSLRTIHAMGKKTGVA 116 (224)
Q Consensus 92 H~E~~~~~~~~i~~i~~~g~k~Gia 116 (224)
-+....+....+......+.++|+.
T Consensus 221 E~a~~~~~l~~l~~~~~~~k~i~lG 245 (307)
T PRK00957 221 EFAGNKENLEVLEEKDLIGKKIGFG 245 (307)
T ss_pred EECCCCCHHHHHHHHCCCCCEEEEE
T ss_conf 7079944388887640589859986
No 195
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.81 E-value=0.045 Score=33.59 Aligned_cols=155 Identities=17% Similarity=0.278 Sum_probs=112.2
Q ss_pred CEECCCCCC------CHHHHHHHHHC--CCCEEEEEEEEEECC----HHHH-HHCCCCCCEEEEECCCC----------C
Q ss_conf 634584341------78999986412--564168567885120----3367-64047760799970664----------2
Q gi|254780975|r 41 GCFVPNISF------GADVIRSLRSY--SDSVFDCHLMISSID----SHIN-IIADAGCDIITFHPESS----------P 97 (224)
Q Consensus 41 g~fvpn~~~------~~~~i~~i~~~--t~~~~dvHLMv~~P~----~~i~-~~~~~g~d~i~~H~E~~----------~ 97 (224)
.+.++.+|+ +|+.|+.|..| +++.++.-+- -||- .++. .+.+.|-|+|.|.-++- +
T Consensus 204 ~~i~~~~tlST~HGcpp~EIe~I~~yl~~ek~l~t~iK-~NpTllgy~~~r~~ld~~g~~yi~~~~~~F~~Dlq~~~a~~ 282 (1012)
T TIGR03315 204 PKVCHSVTLSTMHGCPPDEIEAICRYLLEEKGLHTFVK-LNPTLLGYKFVRDTMDEMGFDYIVLKEESFSHDLQYEDAVA 282 (1012)
T ss_pred HHHCCCEEEHHCCCCCHHHHHHHHHHHHHCCCCCEEEE-ECCCCCCHHHHHHHHHHCCCCEEECCHHHCCCCCCHHHHHH
T ss_conf 22218466410469897999999999985057766885-17420158999999986098527427665344354678999
Q ss_pred CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 15899986776498259985233344789988620140289983067765332201357789986543138652698158
Q gi|254780975|r 98 HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGG 177 (224)
Q Consensus 98 ~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGG 177 (224)
-+.+.....+++|..+|+-|...-|+..-..-+|.-. +-| ||.++-|=+++-..++++-++. .+.|.--||
T Consensus 283 ml~rl~~la~~~~l~fGvKltNT~~v~~~~~~lP~~e--MYm------SG~~L~plsi~~a~~l~~~f~g-~l~isysgG 353 (1012)
T TIGR03315 283 MLQRLQLLAKEKGLGFGVKLTNTLPVTIAKGELPGEE--MYM------SGRALFPLSINLAAKLSREFDG-KLQISYSGG 353 (1012)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCEEEEECCCCCCCCC--CCC------CCCCCCHHHHHHHHHHHHHHCC-CCCEEEECC
T ss_conf 9999999999729656588704300561268799633--203------5885620158999999997099-751366467
Q ss_pred CCHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 9988999999679989997426637899
Q gi|254780975|r 178 VTSRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 178 vn~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
....|+.++.++|..-+.+-|.|.+-..
T Consensus 354 ad~~ni~~i~~~gi~piT~at~lLkpgG 381 (1012)
T TIGR03315 354 ADIFNIKEIFDTGIWPITMATTLLKPGG 381 (1012)
T ss_pred CCHHCHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 5422599999729850032102168762
No 196
>KOG4175 consensus
Probab=96.76 E-value=0.04 Score=33.86 Aligned_cols=190 Identities=19% Similarity=0.266 Sum_probs=113.8
Q ss_pred ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEE---------CCCCCCC--HHHHHHHHHCCCCEEEE
Q ss_conf 81706325--889999999999965998999973------42634---------5843417--89999864125641685
Q gi|254780975|r 7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCF---------VPNISFG--ADVIRSLRSYSDSVFDC 67 (224)
Q Consensus 7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~f---------vpn~~~~--~~~i~~i~~~t~~~~dv 67 (224)
+.+=+-|. |...-...++-+...|.|-+.+-+ .||-- -++.+|. .++++.-|+. ....-+
T Consensus 20 LvtfiTaG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~-gvt~PI 98 (268)
T KOG4175 20 LVTFITAGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQ-GVTCPI 98 (268)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCCCCE
T ss_conf 8998724899678899999887527967488668567645677345566789987289689999999985046-863026
Q ss_pred EEEEE-EC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCE-EEEE
Q ss_conf 67885-12------0336764047760799970664215899986776498259985233344789988620140-2899
Q gi|254780975|r 68 HLMIS-SI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDM-ILIM 139 (224)
Q Consensus 68 HLMv~-~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~-vliM 139 (224)
-||.- || ++|+....++|++-..+.----+..+.+-+++|++|...-.-.-|.|+-+..+-+..-.|- |-+.
T Consensus 99 iLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYvV 178 (268)
T KOG4175 99 ILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYVV 178 (268)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCEEEEE
T ss_conf 62201448876407899999996587745850688689899999998649248974179980899999998632559998
Q ss_pred EEECCCCCCC--CCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHH
Q ss_conf 8306776533--220135778998654313865269815899-8899999967998999742663
Q gi|254780975|r 140 TVNPGFGGQQ--LIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFF 201 (224)
Q Consensus 140 ~V~PG~~Gq~--f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif 201 (224)
+ .-|-.|-. ..+..-+.+.++|+.-. +-.+.|-=||+ .|+.+..... +|-+|+||.+.
T Consensus 179 S-rmG~TG~~~svn~~l~~L~qrvrk~t~--dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv 239 (268)
T KOG4175 179 S-RMGVTGTRESVNEKLQSLLQRVRKATG--DTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIV 239 (268)
T ss_pred E-ECCCCCCHHHHHHHHHHHHHHHHHHCC--CCCEEEEECCCCHHHHHHHHHH-CCCEEECHHHH
T ss_conf 7-145666177788889999999998648--9862675066878998765203-25447607899
No 197
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=96.76 E-value=0.051 Score=33.23 Aligned_cols=207 Identities=18% Similarity=0.276 Sum_probs=121.4
Q ss_pred CCCCEEEC--------HHHHCC--CHHHHHHHHHHHHHCCCCEEEEEEECCE-ECCCCCC----CHHHHHHHHH-CCCCE
Q ss_conf 97981881--------706325--8899999999999659989999734263-4584341----7899998641-25641
Q gi|254780975|r 1 MTPSIQIV--------PSILAA--DFSRLGEEISNITKAGAKQIHFDVMDGC-FVPNISF----GADVIRSLRS-YSDSV 64 (224)
Q Consensus 1 M~k~~~Is--------pSil~~--d~~~l~~~i~~l~~~~~d~iHiDImDg~-fvpn~~~----~~~~i~~i~~-~t~~~ 64 (224)
|+|++.|. -|+++. ...++......+++.| +.++++.-|- |--.+-| +++.++.+|+ .++.+
T Consensus 1 m~k~v~i~DtTlRDg~QSl~atR~rt~d~l~ia~~~d~~G--~~slE~wGGAtfdv~~rfl~EdPwerlr~lr~~~pnt~ 78 (580)
T PRK09282 1 MSKKVKITDTVLRDAHQSLLATRMRTEDMLPIAEKLDKVG--FWSLEVWGGATFDACIRFLGEDPWERLRELKKAMPNTP 78 (580)
T ss_pred CCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC--CCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 9960158877643411202243379999999999998609--83898047841888888747798999999998677873
Q ss_pred EEEEEE-------EEECCH----HHHHHCCCCCCEEEEECCCC---CCHHHHHHHHHHCCCEEEEEEECCC-CHHHHHHH
Q ss_conf 685678-------851203----36764047760799970664---2158999867764982599852333-44789988
Q gi|254780975|r 65 FDCHLM-------ISSIDS----HINIIADAGCDIITFHPESS---PHIRRSLRTIHAMGKKTGVAINPET-PVAILEDV 129 (224)
Q Consensus 65 ~dvHLM-------v~~P~~----~i~~~~~~g~d~i~~H~E~~---~~~~~~i~~i~~~g~k~Giai~p~T-~~~~i~~~ 129 (224)
+..-|= ...|.+ +++...++|.|++-+- .+. .++...++.+++.|..+-.+|+-.+ |...+++|
T Consensus 79 lqmLlRG~N~vGy~~ypd~vv~~fv~~~~~~GidifRiF-D~LNdv~nm~~~~~~v~~~G~~~e~~i~yt~sP~ht~~yy 157 (580)
T PRK09282 79 LQMLLRGQNLLGYRHYADDVVEKFVEKAAENGIDVFRIF-DALNDVRNMETAIKAVKKVGAHAQGTISYTTSPVHTLETW 157 (580)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE-ECCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHH
T ss_conf 320111133256445886899999999997699789974-0123257789999999845987999999715887638999
Q ss_pred HHHCCEEE-----EEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE----EECCCCHHHHHHHHHCCCCEEEEC-HH
Q ss_conf 62014028-----998306776533220135778998654313865269----815899889999996799899974-26
Q gi|254780975|r 130 IDEIDMIL-----IMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLE----VDGGVTSRNIKSLVQAGADLLVVG-SS 199 (224)
Q Consensus 130 l~~~D~vl-----iM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~----vDGGvn~~~i~~l~~~Gad~~V~G-sa 199 (224)
++....+. .+++. --+|---=..+.+.|+.+|+.+ ++.|+ -..|...-+.-...++|||++=.. |+
T Consensus 158 ~~~a~~l~~~G~d~i~iK-DmaGll~P~~a~~LV~alk~~~---~lpI~~HtH~t~G~~~a~~l~A~eAGvdivD~a~~~ 233 (580)
T PRK09282 158 VDLAKQLEEMGCDSICIK-DMAGLLTPYAAYELVSALKKEV---DLPVHLHCHATTGLATMTYLKAVEAGVDILDTAISS 233 (580)
T ss_pred HHHHHHHHHCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 999999997499889972-6655789899999999999861---981699824776479999999998488867001355
Q ss_pred ---HHCCCCHHHHHHHHH
Q ss_conf ---637899899999999
Q gi|254780975|r 200 ---FFNQKGEISYAKRLN 214 (224)
Q Consensus 200 ---if~~~d~~~~~~~l~ 214 (224)
.-.++........++
T Consensus 234 ~s~gtsqP~~~~~v~~l~ 251 (580)
T PRK09282 234 MSMGTSHPPTETVVAALQ 251 (580)
T ss_pred CCCCCCCCCHHHHHHHHH
T ss_conf 348878987999999873
No 198
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=96.76 E-value=0.05 Score=33.29 Aligned_cols=194 Identities=21% Similarity=0.313 Sum_probs=120.3
Q ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEEEE------------------CCEECCCCCCC----HHHHHHHHHC--CCCEEEE
Q ss_conf 3258899999999999659989999734------------------26345843417----8999986412--5641685
Q gi|254780975|r 12 LAADFSRLGEEISNITKAGAKQIHFDVM------------------DGCFVPNISFG----ADVIRSLRSY--SDSVFDC 67 (224)
Q Consensus 12 l~~d~~~l~~~i~~l~~~~~d~iHiDIm------------------Dg~fvpn~~~~----~~~i~~i~~~--t~~~~dv 67 (224)
++|-+-.-.+.+..+...|+.++-+-=+ |.-.++.++|. -.+.+.+++. ...|+-|
T Consensus 54 lAAGfDKn~~~~~~~~~lGfGfvevGTVT~~pq~GNpkPRifRl~~~~aiiN~~GfnN~G~~~~~~~L~~~~~~~~~lgv 133 (327)
T cd04738 54 LAAGFDKNAEAIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGV 133 (327)
T ss_pred ECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEECCCCCEEEHHCCCCCHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 54588988589999996698679971436888889999857974675401100458717699999999840456871799
Q ss_pred EEEEEE--C-----CHHHH---HHCCCCCCEEEEECCC-----------CCCHHHHHHHHHHCC------CEEEEEEECC
Q ss_conf 678851--2-----03367---6404776079997066-----------421589998677649------8259985233
Q gi|254780975|r 68 HLMISS--I-----DSHIN---IIADAGCDIITFHPES-----------SPHIRRSLRTIHAMG------KKTGVAINPE 120 (224)
Q Consensus 68 HLMv~~--P-----~~~i~---~~~~~g~d~i~~H~E~-----------~~~~~~~i~~i~~~g------~k~Giai~p~ 120 (224)
-+.-.. | +.|+. ++... +|++++-.-+ .+.+.+.++.+++.. .-+-+-|.|+
T Consensus 134 nIg~nk~t~~e~~~~Dy~~~~~~l~~~-aDy~~iNiSsPNt~glr~lq~~~~l~~ll~~v~~~~~~~~~~~Pi~vKlsPD 212 (327)
T cd04738 134 NIGKNKDTPLEDAVEDYVIGVRKLGPY-ADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD 212 (327)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 985047882676899999999985355-7789995468898451002688999999999999998537788669981799
Q ss_pred CCHHHHHHHHHH-----CCEEEEE-E-------------EEC-CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CC
Q ss_conf 344789988620-----1402899-8-------------306-7765332201357789986543138652698158-99
Q gi|254780975|r 121 TPVAILEDVIDE-----IDMILIM-T-------------VNP-GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGG-VT 179 (224)
Q Consensus 121 T~~~~i~~~l~~-----~D~vliM-~-------------V~P-G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGG-vn 179 (224)
.+-+.+..+++. +|-|.+- | ... |.||.+..+.+++.++++++..+. .+.|.-=|| .+
T Consensus 213 ~~~~~i~~i~~~~~~~g~dGvi~tNTt~~r~~~~~~~~~~~~GGlSG~pl~~~s~~~v~~v~~~~~~-~~pIIgvGGI~s 291 (327)
T cd04738 213 LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGG-KIPIIGVGGISS 291 (327)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCEEEECCCCC
T ss_conf 7667899999999973997899958855542124565556668636406789999999999997499-981999889799
Q ss_pred HHHHHHHHHCCCCEEEECHH-HHCCCCHH
Q ss_conf 88999999679989997426-63789989
Q gi|254780975|r 180 SRNIKSLVQAGADLLVVGSS-FFNQKGEI 207 (224)
Q Consensus 180 ~~~i~~l~~~Gad~~V~Gsa-if~~~d~~ 207 (224)
.+.+.+...+||+.+=++|+ +|+.+...
T Consensus 292 ~~Da~e~i~aGAslVQiyT~liy~GP~li 320 (327)
T cd04738 292 GEDAYEKIRAGASLVQLYTGLVYEGPGLV 320 (327)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHH
T ss_conf 99999999869969987689893190699
No 199
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=96.73 E-value=0.022 Score=35.59 Aligned_cols=117 Identities=22% Similarity=0.383 Sum_probs=71.3
Q ss_pred CHHHHHHCC-CC---------CCEEEE---ECCCCCCHHHHHHHHHHCC-CEEEEEEECCCCHHHHHHHHH-HCCEEEEE
Q ss_conf 033676404-77---------607999---7066421589998677649-825998523334478998862-01402899
Q gi|254780975|r 75 DSHINIIAD-AG---------CDIITF---HPESSPHIRRSLRTIHAMG-KKTGVAINPETPVAILEDVID-EIDMILIM 139 (224)
Q Consensus 75 ~~~i~~~~~-~g---------~d~i~~---H~E~~~~~~~~i~~i~~~g-~k~Giai~p~T~~~~i~~~l~-~~D~vliM 139 (224)
.+.+++++- +| .|.+-+ |.-....+.+.++..|..- ...-+-+-.+|. +.++..+. ..|.|++
T Consensus 137 lR~leKyAV~~GGG~nHR~gLsDavliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesl-e~~~eAl~agaDiImL- 214 (280)
T COG0157 137 LRLLEKYAVRAGGGDNHRFGLSDAVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESL-EEAEEALEAGADIIML- 214 (280)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCH-HHHHHHHHCCCCEEEE-
T ss_conf 78999999996497421377752577604478875359999999997589986289974999-9999999749999997-
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 830677653322013577899865431-38652698158998899999967998999742663789
Q gi|254780975|r 140 TVNPGFGGQQLIESTIPKIRQAKALIG-KRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 140 ~V~PG~~Gq~f~~~~l~kI~~l~~~~~-~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
-.|.+ +-++++-+++. +.+..+++-||||.+|++.+.+.|+|.+.+|.-....+
T Consensus 215 --------DNm~~---e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~tGVD~IS~galths~~ 269 (280)
T COG0157 215 --------DNMSP---EELKEAVKLLGLAGRALLEASGGITLENIREYAETGVDVISVGALTHSAP 269 (280)
T ss_pred --------CCCCH---HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf --------69999---99999999744477669997589787789998626997998073304775
No 200
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=96.70 E-value=0.059 Score=32.83 Aligned_cols=184 Identities=15% Similarity=0.186 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEE--EEEEE------EECCHHHHHHCCCCCCEE
Q ss_conf 9999999999659989999734263458434178999986412564168--56788------512033676404776079
Q gi|254780975|r 18 RLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD--CHLMI------SSIDSHINIIADAGCDII 89 (224)
Q Consensus 18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~d--vHLMv------~~P~~~i~~~~~~g~d~i 89 (224)
.+++..+.+.++.++.+-+==-+|..+.=+|. ..++.-+.+++--.| =.|+| .+...-.+.+.++|+|.+
T Consensus 181 sl~eA~~lL~~~kiekLpvVd~~g~L~gLiT~--kDi~k~~~~P~a~~D~~grL~VgAAIg~~d~~eRa~~Lv~aGvD~l 258 (497)
T PRK07107 181 TLKEANNIIWDHKLNTLPIIDKNQHLVYMVFR--KDYDSHKENPLELLDSSKRYVVGAGINTRDYEERVPALVEAGADVL 258 (497)
T ss_pred CHHHHHHHHHHCCCCCEEEECCCCCEEEEEEH--HHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEE
T ss_conf 99999999986344430278379958999983--7888864396311376788889996377789999999998599999
Q ss_pred EEECCCCC--CHHHHHHHHHHCC-CEEEE-EEECCCCHHHHHHHHH-HCCEEEEEEEECCC---------CCCCCCCHHH
Q ss_conf 99706642--1589998677649-82599-8523334478998862-01402899830677---------6533220135
Q gi|254780975|r 90 TFHPESSP--HIRRSLRTIHAMG-KKTGV-AINPETPVAILEDVID-EIDMILIMTVNPGF---------GGQQLIESTI 155 (224)
Q Consensus 90 ~~H~E~~~--~~~~~i~~i~~~g-~k~Gi-ai~p~T~~~~i~~~l~-~~D~vliM~V~PG~---------~Gq~f~~~~l 155 (224)
++-.-+-. ...+.++++|+.- -.+-+ |=|-.|. +-.+.+++ -+|.|-+ ++-||- -|-+-...++
T Consensus 259 viD~AhGhs~~v~~~ik~ik~~~~~~~~i~aGNVaT~-~~~~~L~~aGad~vkV-GiGpGSiCtTr~v~gvG~pQ~sAv~ 336 (497)
T PRK07107 259 CIDSSDGYSEWQKRTLDYIKEKYGDTVKVGAGNVVDR-DGFLYLAEAGADFVKV-GIGGGSICITREQKGIGRGQATALI 336 (497)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCH-HHHHHHHHCCCCEEEE-CCCCCCCCEECCCCCCCCCHHHHHH
T ss_conf 8034353529999999999986698763414521269-9999999808986897-1159966211301256773488999
Q ss_pred HHHHHHHHHHHCCC--CEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 77899865431386--52698158998-8999999679989997426637899
Q gi|254780975|r 156 PKIRQAKALIGKRS--ISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 156 ~kI~~l~~~~~~~~--~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
+-.+..+++..+.+ ++|..||||+. -.+.+...+|||.+-.||.+-+.+.
T Consensus 337 ~~a~~~~~~~~~~g~~vpiiADGGi~~sGDi~KAlaaGA~~VMlGsllAGt~E 389 (497)
T PRK07107 337 DVAKARDEYFERTGVYIPICSDGGIVHDYHMTLALAMGADFIMLGRYFARFDE 389 (497)
T ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 99999888777416763287178756554599998538988998811057778
No 201
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=96.69 E-value=0.045 Score=33.54 Aligned_cols=194 Identities=18% Similarity=0.284 Sum_probs=119.9
Q ss_pred CCCCEEEC--------HHHHCC--CHHHHHHHHHHHHHCCCCEEEEEEECCE-ECCCCCC----CHHHHHHHHH-CCCCE
Q ss_conf 97981881--------706325--8899999999999659989999734263-4584341----7899998641-25641
Q gi|254780975|r 1 MTPSIQIV--------PSILAA--DFSRLGEEISNITKAGAKQIHFDVMDGC-FVPNISF----GADVIRSLRS-YSDSV 64 (224)
Q Consensus 1 M~k~~~Is--------pSil~~--d~~~l~~~i~~l~~~~~d~iHiDImDg~-fvpn~~~----~~~~i~~i~~-~t~~~ 64 (224)
|+|+++|. -|+++. ...++....+.+++. .+.++++--|- |--.+-| +++.++.+|+ .++.+
T Consensus 1 M~k~i~itDttlRDghQSL~ATRmrt~dmlpia~~~d~~--G~~s~E~wGGAtFd~~~Rfl~EdPWerLr~lr~~~pnt~ 78 (499)
T PRK12330 1 MPRIIGVTELALRDAHQSLMATRMAMEDMVGACEDIDNA--GYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSK 78 (499)
T ss_pred CCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 996335777764117562556458999999999998743--970798037702999998747698999999998677973
Q ss_pred EEEEEE-------EEECC----HHHHHHCCCCCCEEEEECCCCC---CHHHHHHHHHHCCCEEEEEEECC-CCHHHHHHH
Q ss_conf 685678-------85120----3367640477607999706642---15899986776498259985233-344789988
Q gi|254780975|r 65 FDCHLM-------ISSID----SHINIIADAGCDIITFHPESSP---HIRRSLRTIHAMGKKTGVAINPE-TPVAILEDV 129 (224)
Q Consensus 65 ~dvHLM-------v~~P~----~~i~~~~~~g~d~i~~H~E~~~---~~~~~i~~i~~~g~k~Giai~p~-T~~~~i~~~ 129 (224)
+..-|= ...|. .|++...++|.|++-+- .+.+ ++...++.+++.|..+--+|.-. .|+..++.|
T Consensus 79 lQmLlRG~N~vGy~~ypddvv~~fv~~~~~~GidifRiF-DaLNdv~Nm~~ai~~vk~~G~~~q~~i~yt~sPvht~~yy 157 (499)
T PRK12330 79 LQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVF-DALNDLRNLETSIKAVKKTGKHAQGTICYTVSPIHTTEGF 157 (499)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHH
T ss_conf 231313355056425887999999999997699889972-4444577789999999971885899999605887789999
Q ss_pred HHHCCEEEEE-----EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE----EECCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 6201402899-----8306776533220135778998654313865269----81589988999999679989997426
Q gi|254780975|r 130 IDEIDMILIM-----TVNPGFGGQQLIESTIPKIRQAKALIGKRSISLE----VDGGVTSRNIKSLVQAGADLLVVGSS 199 (224)
Q Consensus 130 l~~~D~vliM-----~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~----vDGGvn~~~i~~l~~~Gad~~V~Gsa 199 (224)
++....+.=| ++. --+|---=..+.+.|+.+|+... .++.|+ -..|...-+.-...++|||++=...+
T Consensus 158 ~~~ak~l~~~G~d~i~IK-DmAGll~P~~a~~LV~~lk~~~g-~d~pI~~HtH~T~G~~~~~~l~AieAGvDivD~A~~ 234 (499)
T PRK12330 158 VEQAKRLLDMGCDSICIK-DMAALLKPQPAYDLVKGIKEACG-PDTRVHVHAHATTGVTLVSLMKAIEAGVDVVDTAIS 234 (499)
T ss_pred HHHHHHHHHCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHCC-CCCCEEEECCCCCCHHHHHHHHHHHCCCCEECCCCC
T ss_conf 999999997599989984-75346788999999999998638-998379851788746999999999849988724454
No 202
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.63 E-value=0.033 Score=34.45 Aligned_cols=143 Identities=15% Similarity=0.260 Sum_probs=86.3
Q ss_pred CCCEEEEEEEEE-ECCHH---HHHHCCCCCCEEEEECCC--C-----------CC---HHHHHHHHHHCCCEE-EEEEEC
Q ss_conf 564168567885-12033---676404776079997066--4-----------21---589998677649825-998523
Q gi|254780975|r 61 SDSVFDCHLMIS-SIDSH---INIIADAGCDIITFHPES--S-----------PH---IRRSLRTIHAMGKKT-GVAINP 119 (224)
Q Consensus 61 t~~~~dvHLMv~-~P~~~---i~~~~~~g~d~i~~H~E~--~-----------~~---~~~~i~~i~~~g~k~-Giai~p 119 (224)
.+.|+=+-++.. +++.| .+.+.++|+|++.+-.-+ + .+ +.++++.+++.-.++ -+=|.|
T Consensus 98 ~~~~~i~si~~~~~~~~~~~~a~~~~~~gad~lElNiScPN~~~~~~~g~~~~~~~~~l~~i~~~v~~~~~~Pi~vKLsP 177 (299)
T cd02940 98 PDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTP 177 (299)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 99737988517898789999999998718888998267889876123455524499999999999986247864896288
Q ss_pred C-CCHHHHHHHHHH--CCEEEE-------EEEE----------------CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 3-344789988620--140289-------9830----------------6776533220135778998654313865269
Q gi|254780975|r 120 E-TPVAILEDVIDE--IDMILI-------MTVN----------------PGFGGQQLIESTIPKIRQAKALIGKRSISLE 173 (224)
Q Consensus 120 ~-T~~~~i~~~l~~--~D~vli-------M~V~----------------PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~ 173 (224)
+ |.+..+...+.. +|.|.+ |.++ =|.+|.+..+.++.-|+++++... .++.|.
T Consensus 178 ~~~~i~~ia~~~~~~gadgiv~~Nt~~~~~~i~~d~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~-~~i~Ii 256 (299)
T cd02940 178 NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPE-PGLPIS 256 (299)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCCEE
T ss_conf 7154999999999859989999766677565442235666564567777845587889999999999999648-997789
Q ss_pred EECCC-CHHHHHHHHHCCCCEEEECHHHH-CCC
Q ss_conf 81589-98899999967998999742663-789
Q gi|254780975|r 174 VDGGV-TSRNIKSLVQAGADLLVVGSSFF-NQK 204 (224)
Q Consensus 174 vDGGv-n~~~i~~l~~~Gad~~V~Gsaif-~~~ 204 (224)
-=||| +.+.+-+...+||+.+=++|+++ ..+
T Consensus 257 g~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~Gp 289 (299)
T cd02940 257 GIGGIESWEDAAEFLLLGASVVQVCTAVMNQGF 289 (299)
T ss_pred EECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCH
T ss_conf 989959999999999849989999899998098
No 203
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=96.55 E-value=0.074 Score=32.19 Aligned_cols=185 Identities=19% Similarity=0.220 Sum_probs=111.7
Q ss_pred EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEE---EECCHHHHHHC
Q ss_conf 881706325889999999999965998999973426345843417899998641256416856788---51203367640
Q gi|254780975|r 6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMI---SSIDSHINIIA 82 (224)
Q Consensus 6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv---~~P~~~i~~~~ 82 (224)
.+.|=|-.-+..+-....+.|-++|++-+.|-. |.-...+.|+.+++ ..| ++.+=. -+| ..+++..
T Consensus 14 ~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl-------~sp~a~e~I~~l~~--~~p-~~lIGAGTVL~~-~q~~~a~ 82 (211)
T COG0800 14 PVVPVIRGDDVEEALPLAKALIEGGIPAIEITL-------RTPAALEAIRALAK--EFP-EALIGAGTVLNP-EQARQAI 82 (211)
T ss_pred CEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEC-------CCCCHHHHHHHHHH--HCC-CCEECCCCCCCH-HHHHHHH
T ss_conf 844899708999999999999976987699964-------79878999999998--674-658824556699-9999999
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCC-HHHHHHH
Q ss_conf 47760799970664215899986776498--25998523334478998862014028998306776533220-1357789
Q gi|254780975|r 83 DAGCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIE-STIPKIR 159 (224)
Q Consensus 83 ~~g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~-~~l~kI~ 159 (224)
.+|++.+.-.- .+ .++++.++.+|+ -+|++ ||.|.+.-+-. |+..-+|-| +++--..
T Consensus 83 ~aGa~fiVsP~--~~--~ev~~~a~~~~ip~~PG~~----TptEi~~Ale~------------G~~~lK~FPa~~~Gg~~ 142 (211)
T COG0800 83 AAGAQFIVSPG--LN--PEVAKAANRYGIPYIPGVA----TPTEIMAALEL------------GASALKFFPAEVVGGPA 142 (211)
T ss_pred HCCCCEEECCC--CC--HHHHHHHHHCCCCCCCCCC----CHHHHHHHHHC------------CHHHEEECCCCCCCCHH
T ss_conf 85997898999--99--9999999867996368879----98999999980------------72245643731137698
Q ss_pred HHHHHHH-CCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH-HHHHHHHHHHHHHHH
Q ss_conf 9865431-3865269815899889999996799899974266378998-999999999999786
Q gi|254780975|r 160 QAKALIG-KRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGE-ISYAKRLNDLKKSAL 221 (224)
Q Consensus 160 ~l~~~~~-~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~-~~~~~~l~~l~~~a~ 221 (224)
.++.+.. -.++.++.-|||+.+|++.+..+|+..+=.||.++..... ......+.++.+.+.
T Consensus 143 ~~ka~~gP~~~v~~~pTGGVs~~N~~~yla~gv~avG~Gs~l~~~~~~~~~~~~~i~~~a~~~~ 206 (211)
T COG0800 143 MLKALAGPFPQVRFCPTGGVSLDNAADYLAAGVVAVGLGSWLVPKDLIAAGDWDRITELAREAV 206 (211)
T ss_pred HHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCHHHHHCCCHHHHHHHHHHHH
T ss_conf 9998738999985854698787779999717805995474426735553144999999999999
No 204
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=96.52 E-value=0.06 Score=32.77 Aligned_cols=171 Identities=15% Similarity=0.141 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEEC---
Q ss_conf 99999999999659989999734263458434178999986412564168567885120336764047760799970---
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHP--- 93 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~--- 93 (224)
....+.++.+.++|.|.+-+-=-||.--.| -.+.++.||..+++|+=. -..++....+ ++|.+.|..
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~~---~~~~v~~ik~~~~lPvil--fP~~~~~is~-----~aDavff~svLN 97 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVTEEN---VDNVVEAIKERTDLPVIL--FPGSPSGISP-----YADAVFFPSVLN 97 (240)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCCHHH---HHHHHHHHHHHCCCCEEE--ECCCHHCCCC-----CCCEEEEEEEEC
T ss_conf 452899999997399889977855644799---999999997506998899--3588100572-----577689888851
Q ss_pred ------------CCCCCHHHHHHH-------HHHCCCEEEEEE----ECCCCHHHHHHHH--HHCCEEEEEEEEC-CCCC
Q ss_conf ------------664215899986-------776498259985----2333447899886--2014028998306-7765
Q gi|254780975|r 94 ------------ESSPHIRRSLRT-------IHAMGKKTGVAI----NPETPVAILEDVI--DEIDMILIMTVNP-GFGG 147 (224)
Q Consensus 94 ------------E~~~~~~~~i~~-------i~~~g~k~Giai----~p~T~~~~i~~~l--~~~D~vliM~V~P-G~~G 147 (224)
+...-..+.... +-+.+.++|-.= .|.+..+....|. .+.=..-++=++- |-.|
T Consensus 98 S~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsga~ 177 (240)
T COG1646 98 SDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSGAG 177 (240)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHEECCEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_conf 79964041456620278876321115448999779971366235555789858899999999997198589998068889
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 33220135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r 148 QQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 148 q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
++-.+ +.+++.++. ..+.+-|||+ .|++.++.++|||.+|.|+.+..+++
T Consensus 178 ~Pv~~---e~v~~v~~~-----~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~ 228 (240)
T COG1646 178 DPVPV---EMVSRVLSD-----TPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPD 228 (240)
T ss_pred CCCCH---HHHHHHHCC-----CEEEECCCCCCHHHHHHHHHCCCCEEEECCEEECCHH
T ss_conf 98688---999986145-----5089858849899999999717998997700200878
No 205
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=96.50 E-value=0.08 Score=31.98 Aligned_cols=198 Identities=13% Similarity=0.189 Sum_probs=115.7
Q ss_pred EEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEE-----E-----------CCEECCCCCCC---HH----HHHHH-HHC
Q ss_conf 1881706325889999999999965998999973-----4-----------26345843417---89----99986-412
Q gi|254780975|r 5 IQIVPSILAADFSRLGEEISNITKAGAKQIHFDV-----M-----------DGCFVPNISFG---AD----VIRSL-RSY 60 (224)
Q Consensus 5 ~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDI-----m-----------Dg~fvpn~~~~---~~----~i~~i-~~~ 60 (224)
+-++++.++.+.. .++.+...|+-.+-+== - +.-..+.++|+ .+ .+..+ ++.
T Consensus 15 i~lAaG~~~~~~e----~~~~~~~~G~G~v~~kTit~~pq~GNp~PR~~r~~~~~iN~~G~~n~G~~~~~~~l~~~~~~~ 90 (308)
T PRK02506 15 LMNAAGVYCMTKE----ELEEVEASQAGSFVTKTATLEVRPGNPEPRYADTPLGSINSMGLPNNGFDYYLDYVLDLQKTG 90 (308)
T ss_pred CEECCCCCCCCHH----HHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 8878678998999----999999769738995423545766999986997675301215478563899999889999627
Q ss_pred CCCEEEEEEEEEECCHHH---HHHCCCC-CCEEEEECCC--C-------CC---HHHHHHHHHHCCCEE-EEEEECCCCH
Q ss_conf 564168567885120336---7640477-6079997066--4-------21---589998677649825-9985233344
Q gi|254780975|r 61 SDSVFDCHLMISSIDSHI---NIIADAG-CDIITFHPES--S-------PH---IRRSLRTIHAMGKKT-GVAINPETPV 123 (224)
Q Consensus 61 t~~~~dvHLMv~~P~~~i---~~~~~~g-~d~i~~H~E~--~-------~~---~~~~i~~i~~~g~k~-Giai~p~T~~ 123 (224)
.+.|+-+-++-.+++.|. +.+..++ +|++.+-.-+ + .+ +.++++.+++.-.++ .+=|.|+.++
T Consensus 91 ~~~~vi~si~g~~~~e~~~~~~~~~~~~~~~~ielNiScPNt~g~~~~~~d~~~~~~il~~v~~~~~~Pi~vKlsP~~~~ 170 (308)
T PRK02506 91 PHKPHFLSVVGLSPEETHTILKKIQASDFEGLVELNLSCPNVPGKPQIAYDFETTDQILTEVFTYFTKPLGVKLPPYFDI 170 (308)
T ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 99975888850775377888999875475425546333788510555522899999999999987503334558987776
Q ss_pred HHHHHHHHHC-----CEEEE-------EEE-------EC-----CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-
Q ss_conf 7899886201-----40289-------983-------06-----77653322013577899865431386526981589-
Q gi|254780975|r 124 AILEDVIDEI-----DMILI-------MTV-------NP-----GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV- 178 (224)
Q Consensus 124 ~~i~~~l~~~-----D~vli-------M~V-------~P-----G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv- 178 (224)
..+......+ +.+.. |.+ .| |.||.+..+.++..|+++.+... .++.|.-=|||
T Consensus 171 ~~~~~~a~~~~~~~~~~i~~~nt~~~~~~i~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~~~~~~~-~~i~IIg~GGI~ 249 (308)
T PRK02506 171 VHFDQAAAIFNKYPLAFVNCVNSIGNGLVIEDESVVIKPKNGFGGIGGDYIKPTALANVHAFYQRLK-PSIQIIGTGGVK 249 (308)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCEEEECCCC
T ss_conf 7699999985615653798870235662013775101567887887761133799999999999838-996389866707
Q ss_pred CHHHHHHHHHCCCCEEEECHHH-HCCCCHH
Q ss_conf 9889999996799899974266-3789989
Q gi|254780975|r 179 TSRNIKSLVQAGADLLVVGSSF-FNQKGEI 207 (224)
Q Consensus 179 n~~~i~~l~~~Gad~~V~Gsai-f~~~d~~ 207 (224)
+.+.+-+...+||+.+=++|++ |..+...
T Consensus 250 s~~Da~e~i~aGAs~VQv~Tal~~~Gp~~~ 279 (308)
T PRK02506 250 TGRDAFEHILCGASMVQVGTALHKEGPAIF 279 (308)
T ss_pred CHHHHHHHHHCCCCCEEEEEEEEEECCHHH
T ss_conf 899999999819872068422204594799
No 206
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=96.43 E-value=0.084 Score=31.82 Aligned_cols=126 Identities=16% Similarity=0.309 Sum_probs=82.9
Q ss_pred HHHHCCCCCCEEEE-EC-------CCCCCHHHHHHHHHHCCCEEEEEEECCC-------CH----HHHHHHHHHCCE--E
Q ss_conf 67640477607999-70-------6642158999867764982599852333-------44----789988620140--2
Q gi|254780975|r 78 INIIADAGCDIITF-HP-------ESSPHIRRSLRTIHAMGKKTGVAINPET-------PV----AILEDVIDEIDM--I 136 (224)
Q Consensus 78 i~~~~~~g~d~i~~-H~-------E~~~~~~~~i~~i~~~g~k~Giai~p~T-------~~----~~i~~~l~~~D~--v 136 (224)
..++.+.|++++.+ |. |+...+.+.+..+.+.|..+-+.+.-.. .. +.+...++.++. =
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~~~Et~~~i~~K~~~a~~~~l~pI~CiGE~~~~~~~~~~~~~l~~Ql~~~l~~~~~~~~ 156 (242)
T cd00311 77 AEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAP 156 (242)
T ss_pred HHHHHHCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHCCCHHCC
T ss_conf 99999759998997558989881998799999999999879927999366066554043999999999999847101036
Q ss_pred EEEEEEC----CCCCCCCCCH-HHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHCC-CCEEEECHHHHCCC
Q ss_conf 8998306----7765332201-35778998654313------86526981589988999999679-98999742663789
Q gi|254780975|r 137 LIMTVNP----GFGGQQLIES-TIPKIRQAKALIGK------RSISLEVDGGVTSRNIKSLVQAG-ADLLVVGSSFFNQK 204 (224)
Q Consensus 137 liM~V~P----G~~Gq~f~~~-~l~kI~~l~~~~~~------~~~~I~vDGGvn~~~i~~l~~~G-ad~~V~Gsaif~~~ 204 (224)
++..-+| | +|+.-.+. .-+-++.+|+...+ .++.|---|+||.+|+.++.+.+ +|-+-+|||-.+.+
T Consensus 157 ~iIAYEPvWAIG-tG~~as~~~i~ev~~~Ir~~l~~~~~~~~~~v~iLYGGSV~~~N~~~i~~~~~vdG~LvG~ASl~~~ 235 (242)
T cd00311 157 VVIAYEPVWAIG-TGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAE 235 (242)
T ss_pred EEEEECCHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHH
T ss_conf 099977688618-9999999999999999999999862020367548960778988999995689999788535767888
No 207
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=96.35 E-value=0.097 Score=31.42 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHH-HCCCCEEEECHHHHCCCC
Q ss_conf 35778998654313865269815899-88999999-679989997426637899
Q gi|254780975|r 154 TIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLV-QAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 154 ~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~-~~Gad~~V~Gsaif~~~d 205 (224)
-++.|+++++.. ++++..-|+|. .+.+..+. ..|+|-+-.|.+.+++|-
T Consensus 171 ~w~~i~~~k~~~---~ipvi~NGdi~~~~d~~~~l~~tg~dgvMigRga~~nPw 221 (309)
T pfam01207 171 DWDAIKQVKQAV---SIPVIANGDITDAEDAQRCLSYTGADGVMIGRGALGNPW 221 (309)
T ss_pred CHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHCCH
T ss_conf 418999999858---982898089488999999986109999998489774988
No 208
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=96.28 E-value=0.072 Score=32.26 Aligned_cols=130 Identities=17% Similarity=0.244 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHHC--CCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEE
Q ss_conf 25889999999999965--9989999734263458434178999986412564168567885120336764047760799
Q gi|254780975|r 13 AADFSRLGEEISNITKA--GAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIIT 90 (224)
Q Consensus 13 ~~d~~~l~~~i~~l~~~--~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~ 90 (224)
..+..+.-+|++.+.+. |+..+ -+.|..|..|-..-.++.+.|++. +++..+-.-+.-.+..++.+.++|...|.
T Consensus 226 ~RSpe~VvdEIe~l~~~y~gv~~~--~f~DD~Ft~~~~r~~eic~~i~~l-~i~W~~~~Rv~~d~E~l~~mk~AGc~~v~ 302 (472)
T TIGR03471 226 TRSAESVIEEVKYALENFPEVREF--FFDDDTFTDDKPRAEEIARKLGPL-GVTWSCNARANVDYETLKVMKENGLRLLL 302 (472)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHC-CCEEEEEEECCCCHHHHHHHHHHCCEEEE
T ss_conf 159999999999999866897589--994776678999999999999876-98278763034899999999983984899
Q ss_pred EECCCCC--------------CHHHHHHHHHHCCCEEEEEEE---CCCCHHHHHHHHH-----HCCEEEEEEEE--CCC
Q ss_conf 9706642--------------158999867764982599852---3334478998862-----01402899830--677
Q gi|254780975|r 91 FHPESSP--------------HIRRSLRTIHAMGKKTGVAIN---PETPVAILEDVID-----EIDMILIMTVN--PGF 145 (224)
Q Consensus 91 ~H~E~~~--------------~~~~~i~~i~~~g~k~Giai~---p~T~~~~i~~~l~-----~~D~vliM~V~--PG~ 145 (224)
+=+|+.+ +..+.++.++++|+.+-..+- |+-..+.++.-+. .+|++++-... ||-
T Consensus 303 ~GiESgsq~iL~~i~K~~t~e~~~~av~~~k~~GI~v~~~FIiG~PgET~Eti~~Ti~fa~~l~~d~~~~si~tPyPGT 381 (472)
T TIGR03471 303 VGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGT 381 (472)
T ss_pred EECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 8037589999998538998999999999887579879999987799998899999999999759890899872588996
No 209
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=96.27 E-value=0.11 Score=31.15 Aligned_cols=183 Identities=15% Similarity=0.138 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECC
Q ss_conf 88999999999996599899997342634584341789999864125641685678851203367640477607999706
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPE 94 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E 94 (224)
|+..+. +..+ .++.-+-+ ..|..| |.=+.+.++.+|+.+++|+=--=-+-+|. .+.+-..+|||.|.+-+.
T Consensus 72 ~~~~~a---~~y~-~~a~aiSv-lTe~~~---F~G~~~~l~~vr~~~~~PiLrKDFiid~~-Qi~ea~~~GAdaiLLI~~ 142 (459)
T PRK09427 72 DPAEIA---SVYK-HYASAISV-LTDEKY---FQGSFDFLPIVRAIVTQPILCKDFIIDPY-QVYLARYYQADAILLMLS 142 (459)
T ss_pred CHHHHH---HHHH-HCCCEEEE-ECCCCC---CCCCHHHHHHHHHHCCCCEEEEEEECCHH-HHHHHHHCCCCEEEEECC
T ss_conf 999999---9997-05838999-537453---48888999999985799757100560099-999999809989998702
Q ss_pred CCC--CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 642--158999867764982599852333447899886201402899830677653322013577899865431386526
Q gi|254780975|r 95 SSP--HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISL 172 (224)
Q Consensus 95 ~~~--~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I 172 (224)
... .+.+..+..++.|..+=+=++-...++..... ..+.| +||-..= ..|. --++.-.++..+.|+.-+.|
T Consensus 143 ~L~~~~l~~l~~~a~~lgl~~LvEvh~~~el~~a~~~--~~~ii---GiNnRnL-~tf~-vdl~~t~~l~~~ip~~~~~v 215 (459)
T PRK09427 143 VLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIAL--GAKVI---GINNRNL-RDLS-IDLNRTRELAPLIPADVTVI 215 (459)
T ss_pred CCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHC--CCCEE---EEECCCC-CCEE-ECHHHHHHHHHHCCCCCEEE
T ss_conf 2899999999999998299079996899999999848--99989---9878988-6214-87799999997689997499
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
Q ss_conf 981589988999999679989997426637899899999999
Q gi|254780975|r 173 EVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLN 214 (224)
Q Consensus 173 ~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~ 214 (224)
.=-|==+.+.+..+.++ +|.+-+|+++-+++|+.++.+.|.
T Consensus 216 sESGI~~~~dv~~l~~~-~~~~LvGe~lmr~~d~~~~~r~l~ 256 (459)
T PRK09427 216 SESGIYTHAQVRELSPF-VNGFLIGSSLMAEDDLDLAVRKLI 256 (459)
T ss_pred ECCCCCCHHHHHHHHHH-CCEEEECHHHHCCCCHHHHHHHHH
T ss_conf 73799999999999843-999997858757999899999973
No 210
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=96.23 E-value=0.014 Score=36.90 Aligned_cols=164 Identities=18% Similarity=0.241 Sum_probs=86.7
Q ss_pred HHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCC-CCCH
Q ss_conf 999996599899997342634584341--7899998641256416856788512033676404776079997066-4215
Q gi|254780975|r 23 ISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPES-SPHI 99 (224)
Q Consensus 23 i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~-~~~~ 99 (224)
.+.+.++|.|.+=+ -|.. +.+. -.+.++.+|+ +++|+ =|-.-++.... -++|.+.|..=- ..++
T Consensus 24 ~~~~~~sgtDaI~V---GGS~--~vt~~~~~~~~~~ik~-~~lPv--iLfPg~~~~vs-----~~aDa~lf~sllns~np 90 (229)
T PRK04169 24 DLAICESGTDAIMI---GGSD--GVTEENVDELVSRIKR-YDLPV--ILFPGNVEGIS-----PGADAYLFPSVLNSRDP 90 (229)
T ss_pred HHHHHHCCCCEEEE---CCCC--CCCHHHHHHHHHHHHH-CCCCE--EEECCCHHHCC-----CCCCEEEEEEEECCCCC
T ss_conf 99998629999998---8866--5686999999999861-39898--99459887748-----57786886765348991
Q ss_pred HHHHH----HHHHC-----CCEE----EEEEECCCCHHHHH-------------HHHHHCC---EEEEEEEECC-CCCCC
Q ss_conf 89998----67764-----9825----99852333447899-------------8862014---0289983067-76533
Q gi|254780975|r 100 RRSLR----TIHAM-----GKKT----GVAINPETPVAILE-------------DVIDEID---MILIMTVNPG-FGGQQ 149 (224)
Q Consensus 100 ~~~i~----~i~~~-----g~k~----Giai~p~T~~~~i~-------------~~l~~~D---~vliM~V~PG-~~Gq~ 149 (224)
..++. .+... +.++ =+.+||++.+..+. -+..... ..-++=.+-| -.|.+
T Consensus 91 ~~lig~~~~aa~~~~~~~~~~E~ip~gYiv~~~g~~v~~vs~a~pi~~~~~~i~a~~alA~~~~g~~~iYLE~gsga~~p 170 (229)
T PRK04169 91 YWIIGAQVEAAKEYGDIIDWLEVIPEGYIVLNPGSAVAFVTEAKPIPLDKPDIAAYAALAAEYLGMPIVYLEYGGGAGDP 170 (229)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 36678999899875103676435445899987996002000773389996999999999999839808999658888997
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 220135778998654313865269815899-8899999967998999742663789
Q gi|254780975|r 150 LIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 150 f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
- ..+.|+.+|+... +..+.+-|||+ .+.+.++.++|||.+|+|+.+.+++
T Consensus 171 v---~~e~V~~v~~~l~--~~~LivGGGIrs~e~a~~~~~aGAD~IVvGn~ie~d~ 221 (229)
T PRK04169 171 V---PPEMVKAVKKALT--DTPLIVGGGIRSPEQAREMAKAGADTIVVGTIIEEDI 221 (229)
T ss_pred C---CHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCEECCH
T ss_conf 8---9999999997378--9878992896999999999976999999886201079
No 211
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR011858 This enzyme acts in the biosynthesis of histidine and has been characterised in Saccharomyces cerevisiae and Arabidopsis where it complements the Escherichia coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=96.21 E-value=0.0092 Score=37.97 Aligned_cols=71 Identities=23% Similarity=0.379 Sum_probs=48.6
Q ss_pred EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCC--HHH-HHH
Q ss_conf 02899830677653322013577899865431386526981589988999999679989997426637899--899-999
Q gi|254780975|r 135 MILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKG--EIS-YAK 211 (224)
Q Consensus 135 ~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d--~~~-~~~ 211 (224)
+|..++-+|-.. ..+|..+....-.+||=||||.+|....++.||-.+++=|.||.+.. ..+ -.+
T Consensus 61 HVImLG~nP~n~------------~AAk~AL~~~Pg~LQVGGGIN~~Na~~wl~~GAShVIVTSWlF~~~~qdkm~lDl~ 128 (274)
T TIGR02129 61 HVIMLGPNPLNE------------DAAKEALSAYPGGLQVGGGINAENAQEWLDEGASHVIVTSWLFPDGKQDKMELDLE 128 (274)
T ss_pred EEEEECCCCCCH------------HHHHHHHHHCCCCEECCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHH
T ss_conf 686408689668------------99999997566754405770368899998638972899766646988541222378
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780975|r 212 RLNDLK 217 (224)
Q Consensus 212 ~l~~l~ 217 (224)
+|++|-
T Consensus 129 RL~~i~ 134 (274)
T TIGR02129 129 RLKEIV 134 (274)
T ss_pred HHHHHH
T ss_conf 888887
No 212
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=96.18 E-value=0.083 Score=31.86 Aligned_cols=129 Identities=16% Similarity=0.267 Sum_probs=86.2
Q ss_pred ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCC---CCCC------H----HHHHHHHHCCCCEEEEEEEE--
Q ss_conf 8170632588999999999996599899997342634584---3417------8----99998641256416856788--
Q gi|254780975|r 7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPN---ISFG------A----DVIRSLRSYSDSVFDCHLMI-- 71 (224)
Q Consensus 7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn---~~~~------~----~~i~~i~~~t~~~~dvHLMv-- 71 (224)
++.-|.-.|...+.+..+.+++.|.|. ||+.=|.=++. -.+| | +.++.+++.+++|+.|-+=.
T Consensus 67 v~vQl~G~dp~~la~Aa~i~~~~g~d~--IDlN~GCP~~kV~~g~~Ga~Lm~~p~~v~~iv~a~~~a~~~PVTvK~RlG~ 144 (333)
T PRK11815 67 VALQLGGSDPADLAEAAKLAEDWGYDE--INLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGI 144 (333)
T ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCE--ECCCCCCCHHHHHCCCEEHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 799974799999999999998739885--352389986887327801787079999999999998734885357863167
Q ss_pred E--ECC----HHHHHHCCCCCCEEEEECCCC--------C-------CHHHHHHHHHHCCCEEEEEEECC-CCHHHHHHH
Q ss_conf 5--120----336764047760799970664--------2-------15899986776498259985233-344789988
Q gi|254780975|r 72 S--SID----SHINIIADAGCDIITFHPESS--------P-------HIRRSLRTIHAMGKKTGVAINPE-TPVAILEDV 129 (224)
Q Consensus 72 ~--~P~----~~i~~~~~~g~d~i~~H~E~~--------~-------~~~~~i~~i~~~g~k~Giai~p~-T~~~~i~~~ 129 (224)
+ ++. ++++.+.++|++.+++|.-.. + +. +.+..+++.-...-+.+|-+ ++.+.....
T Consensus 145 d~~d~~~~l~~f~~~~~~aG~~~i~vH~R~a~l~Glspk~nR~ippl~~-~~v~~lk~~~p~ipvi~NGdI~s~~~~~~~ 223 (333)
T PRK11815 145 DDQDSYEFLCDFVDTVAEAGCDRFIVHARKAWLKGLSPKENREIPPLDY-DRVYRLKRDFPHLTIEINGGIKTLEEAKEH 223 (333)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCHHHHCCCCCHHH-HHHHHHHHHCCCCEEEECCCCCCHHHHHHH
T ss_conf 7775289999999999975998899960278772678777505873048-999999976678718845996999999999
Q ss_pred HHHCCEEEE
Q ss_conf 620140289
Q gi|254780975|r 130 IDEIDMILI 138 (224)
Q Consensus 130 l~~~D~vli 138 (224)
++.+|.|++
T Consensus 224 l~~~DGVMi 232 (333)
T PRK11815 224 LQHVDGVMI 232 (333)
T ss_pred HHCCCEEEE
T ss_conf 855996211
No 213
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=96.15 E-value=0.018 Score=36.18 Aligned_cols=165 Identities=17% Similarity=0.239 Sum_probs=91.4
Q ss_pred HHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCC-CCHHHH
Q ss_conf 9999659989999734263458434178999986412564168567885120336764047760799970664-215899
Q gi|254780975|r 24 SNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESS-PHIRRS 102 (224)
Q Consensus 24 ~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~-~~~~~~ 102 (224)
+.++++|.|.+=+-=-|+. +-++ ...++.+++.++ ++-|=|-.-++... ..++|.+.|..=-. .++..+
T Consensus 19 ~~~~~sgtDai~VGGS~~~---~~~~-~~~v~~ik~~~~-~~PvilfPg~~~~i-----s~~aDa~lf~sllNs~n~~~l 88 (219)
T cd02812 19 KLAEESGTDAIMVGGSDGV---SSTL-DNVVRLIKRIRR-PVPVILFPSNPEAV-----SPGADAYLFPSVLNSGDPYWI 88 (219)
T ss_pred HHHHHHCCCEEEECCCCCC---HHHH-HHHHHHHHHHCC-CCCEEEECCCHHHC-----CCCCCEEEEEEEECCCCCHHH
T ss_conf 9999769999999375574---4779-999999997378-99989957986656-----867786886875338992367
Q ss_pred H-------HHHHH----------------CCCEEEEEE--ECCCCHHHHHHHHHHCCEEE--EEEEECCCCCCCCCCHHH
Q ss_conf 9-------86776----------------498259985--23334478998862014028--998306776533220135
Q gi|254780975|r 103 L-------RTIHA----------------MGKKTGVAI--NPETPVAILEDVIDEIDMIL--IMTVNPGFGGQQLIESTI 155 (224)
Q Consensus 103 i-------~~i~~----------------~g~k~Giai--~p~T~~~~i~~~l~~~D~vl--iM~V~PG~~Gq~f~~~~l 155 (224)
+ ..+++ -|.++|-.- +|....+.+.-|.--.+++- ++=.+ .||.+ -..
T Consensus 89 ig~~~~aa~~~~~~~~~~e~ip~gYiv~~~g~~v~~v~~a~~~~~~~~~~ayAlaae~lg~~~iYLE--gSGa~---v~~ 163 (219)
T cd02812 89 IGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAAEYLGMPIVYLE--YSGAY---GPP 163 (219)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEE--CCCCC---CCH
T ss_conf 7889999998743167632200578998799814888246479998999999999998299389995--68997---999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 778998654313865269815899-88999999679989997426637899
Q gi|254780975|r 156 PKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 156 ~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
+.|+..|+... +..+.|-|||+ .+.+.++.++|||.+|.|+++..++|
T Consensus 164 e~V~~vk~~l~--~~~LivGGGIrs~e~a~~~~~AgAD~IVvGn~iee~~~ 212 (219)
T cd02812 164 EVVRAVKKVLG--DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEEDPN 212 (219)
T ss_pred HHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHCCCCEEEECCCEEECHH
T ss_conf 99999998467--97099928979999999999869999998872240689
No 214
>pfam03437 BtpA BtpA family. The BtpA protein is tightly associated with the thylakoid membranes, where it stabilizes the reaction centre proteins of photosystem I.
Probab=96.11 E-value=0.13 Score=30.64 Aligned_cols=173 Identities=14% Similarity=0.259 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEE-CCEECCCCCCCHHHH-------HHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCE
Q ss_conf 99999999999659989999734-263458434178999-------9864125641685678851203367640477607
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVM-DGCFVPNISFGADVI-------RSLRSYSDSVFDCHLMISSIDSHINIIADAGCDI 88 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDIm-Dg~fvpn~~~~~~~i-------~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~ 88 (224)
-...++++.+.++|+|-+=+-=| |.-|.. ..+|+.+ .++++...+|+=|-+.-++|..-+.-...+|++.
T Consensus 29 e~A~~ea~~l~~~GvDgvivEN~~D~Py~~--~~~~etvaamt~i~~~v~~~~~iP~GvnvL~nd~~aalaiA~a~ga~F 106 (254)
T pfam03437 29 DKAVSDAMALEEGGFDAVILENYGDAPYLK--TVGPETVAAMTVIAGEVKSDVSIPLGINVLRNDAVAALAIAYAVGADF 106 (254)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCC--CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCE
T ss_conf 999999999997799889980689977746--776698999999999998744887367776178589999999829976
Q ss_pred EEE--ECCC--------CCCHHHHHHHHHHCCCEEEEE--EEC--C-----CCHHH-HHHHHHH--CCEEEEEEEECCCC
Q ss_conf 999--7066--------421589998677649825998--523--3-----34478-9988620--14028998306776
Q gi|254780975|r 89 ITF--HPES--------SPHIRRSLRTIHAMGKKTGVA--INP--E-----TPVAI-LEDVIDE--IDMILIMTVNPGFG 146 (224)
Q Consensus 89 i~~--H~E~--------~~~~~~~i~~i~~~g~k~Gia--i~p--~-----T~~~~-i~~~l~~--~D~vliM~V~PG~~ 146 (224)
|=+ +..+ ..+..+++++-+..+.++-+- +++ . .+++. .+.-... .|.|.+=+ --.
T Consensus 107 IRv~~~~g~~~~d~G~~~~~a~~~~r~R~~l~a~v~i~aDV~~Kh~~~l~~~~~~~~~~~~~~~~~aDaiivTG---~~T 183 (254)
T pfam03437 107 IRVNVLTGVAASDQGILEGNAGELARYRKLLPSRIKILADVHVKHAVHLGNRDIESAVLDTIERGLADAVILSG---KTT 183 (254)
T ss_pred EEECCEECEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECC---CCC
T ss_conf 98713765333577531553899999999719995899755001254579999899999999826898999787---302
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 5332201357789986543138652698158998899999967998999742663
Q gi|254780975|r 147 GQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFF 201 (224)
Q Consensus 147 Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif 201 (224)
|++-. +++++++|+.. .+++-+-+|+|.+|+.++.+. +|-+++||++=
T Consensus 184 G~~~~---~~~l~~vk~~~---~~PvlvGSGvt~~Ni~~~l~~-ADG~IVGS~~K 231 (254)
T pfam03437 184 GGEVD---LEELKLAKETV---PVPVLVGSGVNLENLEELWSI-ADGFIVGTSIK 231 (254)
T ss_pred CCCCC---HHHHHHHHHHC---CCCEEEECCCCHHHHHHHHHH-CCEEEEEHHEE
T ss_conf 79999---99999999626---998899579898899999987-89999842230
No 215
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein; InterPro: IPR005991 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria..
Probab=96.10 E-value=0.097 Score=31.43 Aligned_cols=129 Identities=20% Similarity=0.400 Sum_probs=95.1
Q ss_pred CCHHHHHHCCCCCCEEEEECCCCCC--HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCC------
Q ss_conf 2033676404776079997066421--58999867764982599852333447899886201402899830677------
Q gi|254780975|r 74 IDSHINIIADAGCDIITFHPESSPH--IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGF------ 145 (224)
Q Consensus 74 P~~~i~~~~~~g~d~i~~H~E~~~~--~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~------ 145 (224)
-.-..+.+.++|+|.+.+-.-+..+ ....++.++....++-++-..-..-+-...+++-=-.|.-.+|-||.
T Consensus 227 ~~~~~~~l~~aG~d~lv~dtahGhq~~~~~a~k~~~~ld~~~P~~aGn~v~a~G~rdl~~aGa~~~kvGvGPGamCttrm 306 (476)
T TIGR01303 227 VEGKAKALLDAGVDVLVIDTAHGHQEKMISAVKAVRALDLRVPIVAGNVVSAEGVRDLVEAGANIIKVGVGPGAMCTTRM 306 (476)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEECCEEECCCHHHHHHCCCCEEEECCCCCCHHHHHH
T ss_conf 23789999866885899834654068999999999860455865424224110048887447618986468860234444
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHH---HCCCCH
Q ss_conf ---6533220135778998654313865269815899-889999996799899974266---378998
Q gi|254780975|r 146 ---GGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSF---FNQKGE 206 (224)
Q Consensus 146 ---~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsai---f~~~d~ 206 (224)
-|.|--..+++-..+.|++ +-.+|.||||+ ...+.-...+|+..+.+||-. |.+|..
T Consensus 307 ~tGvGrPqfsavleCa~~a~~~----G~h~WadGG~r~PrdvalalaaGasnvm~GsWf~GtyesPGd 370 (476)
T TIGR01303 307 MTGVGRPQFSAVLECAAEARKL----GKHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGD 370 (476)
T ss_pred HHCCCCCHHHHHHHHHHHHHHC----CCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 3057871378998988999860----772640688676377777665064302441100355478510
No 216
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.03 E-value=0.14 Score=30.39 Aligned_cols=152 Identities=19% Similarity=0.197 Sum_probs=91.6
Q ss_pred CCEEEEEEEEEECCHHHHH------HCCCCCCEEEEECCC------------CCCHHHHHHHHHHCCCE-EEEEEECCCC
Q ss_conf 6416856788512033676------404776079997066------------42158999867764982-5998523334
Q gi|254780975|r 62 DSVFDCHLMISSIDSHINI------IADAGCDIITFHPES------------SPHIRRSLRTIHAMGKK-TGVAINPETP 122 (224)
Q Consensus 62 ~~~~dvHLMv~~P~~~i~~------~~~~g~d~i~~H~E~------------~~~~~~~i~~i~~~g~k-~Giai~p~T~ 122 (224)
..|+-+-+.- .++.+... ....++|++.+-.-+ .+.+.+.++.+++.-.. +.+-+.|+++
T Consensus 91 ~~pvi~si~g-~~~d~~~~~~~~~~~~~~~aD~ielNiScPn~~g~~~~~~~~~~~~~~~~~v~~~~~~Pv~vKlsP~~~ 169 (294)
T cd04741 91 AKPFFISVTG-SAEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYTD 169 (294)
T ss_pred CCCEEEECCC-CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 8708998999-836799999999865225564799970378988731001399999999999984157855997289888
Q ss_pred HHHHHHHHHH-------CCEEE-EEEE-----------------E---CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 4789988620-------14028-9983-----------------0---67765332201357789986543138652698
Q gi|254780975|r 123 VAILEDVIDE-------IDMIL-IMTV-----------------N---PGFGGQQLIESTIPKIRQAKALIGKRSISLEV 174 (224)
Q Consensus 123 ~~~i~~~l~~-------~D~vl-iM~V-----------------~---PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~v 174 (224)
.+.+...... ++.+. +-|+ . =|.||.+..+.++..|+++++..+. ++.|.-
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~i~~~nt~~~~l~id~~~~~~~~~~~~~~GGlSG~~l~p~al~~v~~~~~~~~~-~i~Iig 248 (294)
T cd04741 170 PAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPS-EIQIIG 248 (294)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCEEE
T ss_conf 7899999999865788747999880367763335776564334556666667852158999999999997499-987999
Q ss_pred ECCC-CHHHHHHHHHCCCCEEEECHHHH-CCCCHHHHHHHHHHHH
Q ss_conf 1589-98899999967998999742663-7899899999999999
Q gi|254780975|r 175 DGGV-TSRNIKSLVQAGADLLVVGSSFF-NQKGEISYAKRLNDLK 217 (224)
Q Consensus 175 DGGv-n~~~i~~l~~~Gad~~V~Gsaif-~~~d~~~~~~~l~~l~ 217 (224)
=||| +.+.+-+...+||+.+=++|+++ ..++. ..+-.++|+
T Consensus 249 ~GGI~s~~da~e~i~aGAs~VQv~Tal~~~Gp~~--~~~I~~~L~ 291 (294)
T cd04741 249 VGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKV--FARIEKELE 291 (294)
T ss_pred ECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHH--HHHHHHHHH
T ss_conf 8997999999999983997999979999709299--999998799
No 217
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=95.98 E-value=0.027 Score=35.01 Aligned_cols=145 Identities=17% Similarity=0.300 Sum_probs=106.4
Q ss_pred CHHHHHHHHH-CCCCEEEEEE----------EEEE-CCHHHHHHCCCCCCEEEEECCCCCC---HHHHHHHHHHCCC-EE
Q ss_conf 7899998641-2564168567----------8851-2033676404776079997066421---5899986776498-25
Q gi|254780975|r 50 GADVIRSLRS-YSDSVFDCHL----------MISS-IDSHINIIADAGCDIITFHPESSPH---IRRSLRTIHAMGK-KT 113 (224)
Q Consensus 50 ~~~~i~~i~~-~t~~~~dvHL----------Mv~~-P~~~i~~~~~~g~d~i~~H~E~~~~---~~~~i~~i~~~g~-k~ 113 (224)
++..+++||+ .++.|+.==| +-+| -++|+++.++.|.|.+=+ ..|.+| +...|+.+|++|. .+
T Consensus 57 PW~RLR~lk~~~pnT~L~MLLRGQNLlGYRHYADDVVe~FV~~a~~NG~DVFRi-FDALND~RNl~~ai~a~Kk~g~dHv 135 (616)
T TIGR01108 57 PWERLRELKKALPNTKLQMLLRGQNLLGYRHYADDVVEAFVKKAVENGLDVFRI-FDALNDPRNLQKAIEAAKKHGADHV 135 (616)
T ss_pred HHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-ECCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 558999999735787512342045423441584368999999999759808995-1245887789999999997389789
Q ss_pred EEEEECCC-CHHHHHHHHHHCCEEEEEEEE-C---CCCCCCCCC-HHHHHHHHHHHHHHCCC--CEEEEECCCCHHHHHH
Q ss_conf 99852333-447899886201402899830-6---776533220-13577899865431386--5269815899889999
Q gi|254780975|r 114 GVAINPET-PVAILEDVIDEIDMILIMTVN-P---GFGGQQLIE-STIPKIRQAKALIGKRS--ISLEVDGGVTSRNIKS 185 (224)
Q Consensus 114 Giai~p~T-~~~~i~~~l~~~D~vliM~V~-P---G~~Gq~f~~-~~l~kI~~l~~~~~~~~--~~I~vDGGvn~~~i~~ 185 (224)
=-||+-.| |++.+++|++....++=|+|+ . --+|= +-| .+++-++.+|+-+++.. ++...=-|.-.=..-+
T Consensus 136 Qg~iSYTtSPvHTl~~yl~la~~L~~~G~DSI~IKDMaGl-LTP~~AYELV~alK~~~~n~pvhLH~H~TtGmA~~Allk 214 (616)
T TIGR01108 136 QGAISYTTSPVHTLEKYLELAKELLEMGVDSICIKDMAGL-LTPKVAYELVSALKKEFGNLPVHLHSHATTGMAEMALLK 214 (616)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 9997124684367888999999999818860552020046-441589999999974239746886324723379999998
Q ss_pred HHHCCCCEEEE
Q ss_conf 99679989997
Q gi|254780975|r 186 LVQAGADLLVV 196 (224)
Q Consensus 186 l~~~Gad~~V~ 196 (224)
.++||+|.+=-
T Consensus 215 A~EAG~d~iDT 225 (616)
T TIGR01108 215 AIEAGADMIDT 225 (616)
T ss_pred HHHCCCCCCHH
T ss_conf 88707880020
No 218
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=95.88 E-value=0.16 Score=29.99 Aligned_cols=189 Identities=19% Similarity=0.249 Sum_probs=124.0
Q ss_pred CCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEE---EEECCHHHH
Q ss_conf 98188170632588999999999996599899997342634584341789999864125641685678---851203367
Q gi|254780975|r 3 PSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLM---ISSIDSHIN 79 (224)
Q Consensus 3 k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLM---v~~P~~~i~ 79 (224)
+..+|.|=|-.-|..+-....+.|-++|+..+-|=. +..-..+.|+.||+ +.|-|+=+= |-+ .+.+.
T Consensus 6 ~~~~ivPVi~~~~~~~A~~lA~aL~egG~~~~EvTl-------RT~~A~~aI~~l~~--~~P~~~~iGAGTVL~-~~Q~~ 75 (205)
T TIGR01182 6 REAKIVPVIRIDDVEDALPLAKALIEGGLRVLEVTL-------RTPVALEAIRALRK--EVPKDALIGAGTVLN-PEQLR 75 (205)
T ss_pred HHCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEEEE-------CCCCHHHHHHHHHH--HCCCCCEECCCCCCC-HHHHH
T ss_conf 566801788726787778999999867980898851-------47216899999997--282334871676489-89999
Q ss_pred HHCCCCCCE-EEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCC-HHH
Q ss_conf 640477607-99970664215899986776498--25998523334478998862014028998306776533220-135
Q gi|254780975|r 80 IIADAGCDI-ITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIE-STI 155 (224)
Q Consensus 80 ~~~~~g~d~-i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~-~~l 155 (224)
+-.++||+. |+-|.+ .++++.+++.|+ -+|++ ||-|...-+ ++ |+.-=||=| +++
T Consensus 76 ~A~~AGA~F~vSPG~~-----p~l~~~~~~~~~P~iPGV~----tpsEi~~Al-~~-----------G~~~lKlFPAe~~ 134 (205)
T TIGR01182 76 QAVAAGAQFIVSPGLT-----PELAKHAKDKGIPIIPGVA----TPSEIMLAL-EL-----------GITALKLFPAEVV 134 (205)
T ss_pred HHHHCCCCEEECCCCC-----HHHHHHHHHCCCCEECCCC----CHHHHHHHH-HC-----------CCCEEEECCCCCC
T ss_conf 9997089578769788-----8999998508881217776----878999998-75-----------7746521256235
Q ss_pred HHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH-HHHHHHHHHHHHHHHH
Q ss_conf 778998654313-865269815899889999996799899974266378998-9999999999997862
Q gi|254780975|r 156 PKIRQAKALIGK-RSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGE-ISYAKRLNDLKKSALA 222 (224)
Q Consensus 156 ~kI~~l~~~~~~-~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~-~~~~~~l~~l~~~a~a 222 (224)
-=++-++.+..- .+++++==||||.+|++++.+++.=..|+||-++..+-. .....++.+|.+.+.+
T Consensus 135 GG~~~lkAL~GPf~~v~F~PTGGi~l~N~~~YLa~p~v~c~GGSWl~P~~~~~~g~wd~i~~l~r~a~~ 203 (205)
T TIGR01182 135 GGVKMLKALAGPFPQVRFCPTGGINLDNARDYLALPNVACVGGSWLVPKDLIAAGDWDEITELAREALE 203 (205)
T ss_pred CHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHH
T ss_conf 308999973165789845147999887899997189379981631464788758996799999999986
No 219
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205 This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=95.71 E-value=0.037 Score=34.10 Aligned_cols=187 Identities=16% Similarity=0.214 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCC--HHHHHHHHHCCCCEEEEEEEEEECCHH--------HHHHCCC-C
Q ss_conf 9999999999965998999973426345843417--899998641256416856788512033--------6764047-7
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG--ADVIRSLRSYSDSVFDCHLMISSIDSH--------INIIADA-G 85 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~--~~~i~~i~~~t~~~~dvHLMv~~P~~~--------i~~~~~~-g 85 (224)
.+..+.++.+-++|.|-+=+==-+| -|+. -..++.+|+...+|+=+ -..|+... +..+.+. .
T Consensus 14 ~e~~eI~~a~~~~GTDail~GGs~g-----Vt~~~~~~~~~~~~e~~~~P~il--fPsn~~~~s~~~Da~f~~svlNS~~ 86 (242)
T TIGR01768 14 EEADEIAKAAAESGTDAILVGGSQG-----VTLDKLDQLIEALRERYGVPIIL--FPSNLTNVSRKADALFFPSVLNSDD 86 (242)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCCC-----CCHHHHHHHHHHHHHCCCCCEEE--ECCCCCCHHHCCCEEEEEEEEECCC
T ss_conf 6368999999835898898227787-----03688999999997405983798--4188742111067687711431699
Q ss_pred CCEEEE--------ECCCCCCHHHHHHH---------HHHCCCEEEEEEECCC-CH--HHHHHHHHHCCEEEEEE---EE
Q ss_conf 607999--------70664215899986---------7764982599852333-44--78998862014028998---30
Q gi|254780975|r 86 CDIITF--------HPESSPHIRRSLRT---------IHAMGKKTGVAINPET-PV--AILEDVIDEIDMILIMT---VN 142 (224)
Q Consensus 86 ~d~i~~--------H~E~~~~~~~~i~~---------i~~~g~k~Giai~p~T-~~--~~i~~~l~~~D~vliM~---V~ 142 (224)
.++|+= |+|+.+....+.++ |-+.|..+|-.=...+ |. +.+--|.-.....+=|. .+
T Consensus 87 ~~wI~GkhaqWvr~q~~~~~~~~~~~~~~E~~~~gY~iv~pgg~aa~v~~A~~~P~~k~~~Aa~~~~a~~~~g~~~~YLE 166 (242)
T TIGR01768 87 PYWIIGKHAQWVRAQILAAPKFKKLGESLEIIPEGYIIVNPGGAAATVTKAKPIPYDKEDLAAYAALAEEMLGMPIIYLE 166 (242)
T ss_pred CCEEECCHHHHHHHHHHHHHHHHHHHHHHEEHHEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 76453425999999998789887653134001211278758995588502357887768799999999998099689996
Q ss_pred C-CCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHH
Q ss_conf 6-77653322013577899865431-3865269815899-8899999967998999742663789989999
Q gi|254780975|r 143 P-GFGGQQLIESTIPKIRQAKALIG-KRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYA 210 (224)
Q Consensus 143 P-G~~Gq~f~~~~l~kI~~l~~~~~-~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~ 210 (224)
- |-.|.+-.|++..-+|++-.--. .-...+-+=|||+ .|.+.++..||||++|.|.-|.++++..+.+
T Consensus 167 agsgap~pvpPE~va~vk~v~~~aGyGGe~~L~vGGGIRs~E~A~~~a~AgAD~~VtGnvie~~~nv~~k~ 237 (242)
T TIGR01768 167 AGSGAPEPVPPELVAEVKKVLDKAGYGGEVKLIVGGGIRSVEKARKLAEAGADVVVTGNVIEEDDNVVDKA 237 (242)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEECCHHHHHHH
T ss_conf 37875479745899999987410478863257840764788999999534598999846875163789999
No 220
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=95.70 E-value=0.11 Score=31.20 Aligned_cols=189 Identities=20% Similarity=0.291 Sum_probs=112.1
Q ss_pred CCCCEEEC--------HHHHCC--CHHHHHHHHHHHHHCCCCEEEEEEECCEECC-CCCC----CHHHHHHHHH-CCCCE
Q ss_conf 97981881--------706325--8899999999999659989999734263458-4341----7899998641-25641
Q gi|254780975|r 1 MTPSIQIV--------PSILAA--DFSRLGEEISNITKAGAKQIHFDVMDGCFVP-NISF----GADVIRSLRS-YSDSV 64 (224)
Q Consensus 1 M~k~~~Is--------pSil~~--d~~~l~~~i~~l~~~~~d~iHiDImDg~fvp-n~~~----~~~~i~~i~~-~t~~~ 64 (224)
|.|+++|. =|+++. ...++....+.+++.|+.. +++.-|..-. .+-| +.+.++.+|+ .++.+
T Consensus 9 m~k~i~i~DTTlRDg~QSL~atr~~t~d~l~ia~~ld~~G~~s--iE~wGGAtfd~~~rfl~EdPwerlr~lr~~~pnt~ 86 (468)
T PRK12581 9 MQQQVAITETVLRDGHQSLMATRLSIEDMLPVLTILDKIGYYS--LECWGGATFDACIRFLNEDPWERLRTLKKGLPNTR 86 (468)
T ss_pred CCCEEEEEECCCCCHHHCCHHHHCCHHHHHHHHHHHHHCCCCE--EEECCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 5540577878764242130355088999999999999729878--98358810999998748798999999998578973
Q ss_pred EEEEEEE-------EECC----HHHHHHCCCCCCEEEEECCCCC---CHHHHHHHHHHCCCEEEEEEECCC-CHHHHHHH
Q ss_conf 6856788-------5120----3367640477607999706642---158999867764982599852333-44789988
Q gi|254780975|r 65 FDCHLMI-------SSID----SHINIIADAGCDIITFHPESSP---HIRRSLRTIHAMGKKTGVAINPET-PVAILEDV 129 (224)
Q Consensus 65 ~dvHLMv-------~~P~----~~i~~~~~~g~d~i~~H~E~~~---~~~~~i~~i~~~g~k~Giai~p~T-~~~~i~~~ 129 (224)
+-.-+-. ..|. .+++...+.|.|++-+ ..+.+ ++...++.+++.|..+..++.-.+ |...++.|
T Consensus 87 lqmLlRg~n~vgy~~ypddvv~~fv~~~~~~Gidvfri-FD~LNd~~n~~~ai~~vk~~G~~~~~~i~yt~sp~ht~~yy 165 (468)
T PRK12581 87 LQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRI-FDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYY 165 (468)
T ss_pred EEEEHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHH
T ss_conf 43001123320114588289999999999759987997-31467678999999999963874899999668975549999
Q ss_pred HHHCCEEEEE-----EE-ECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE----EECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 6201402899-----83-06776533220135778998654313865269----815899889999996799899974
Q gi|254780975|r 130 IDEIDMILIM-----TV-NPGFGGQQLIESTIPKIRQAKALIGKRSISLE----VDGGVTSRNIKSLVQAGADLLVVG 197 (224)
Q Consensus 130 l~~~D~vliM-----~V-~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~----vDGGvn~~~i~~l~~~Gad~~V~G 197 (224)
++....+.=| ++ +..--..| ..+.+.|+.+|+. .++.|+ -+-|...-|.-..+++|||++=..
T Consensus 166 ~~~ak~l~~~Gad~I~iKDmaGlL~P--~~a~~LV~~lK~~---~~iPI~~HtH~t~Gla~a~~laAieAGaDiVD~A 238 (468)
T PRK12581 166 LSLVKELVEMGADSICIKDMAGILTP--KAAKELVSGIKAM---TNLPLIVHTHATSGISQMTYLAAVEAGADRIDTA 238 (468)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCH--HHHHHHHHHHHHC---CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEC
T ss_conf 99999999739998998478777688--9999999999836---7986599825887549999999998199999744
No 221
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=95.68 E-value=0.2 Score=29.47 Aligned_cols=175 Identities=15% Similarity=0.133 Sum_probs=99.1
Q ss_pred HHHCCCCEEEEEEECCEECCCCCCCH-HHHHHHHH-CCCCEEEEEEEEEECCHHH---HHHCCCCCCEEEEECCC-----
Q ss_conf 99659989999734263458434178-99998641-2564168567885120336---76404776079997066-----
Q gi|254780975|r 26 ITKAGAKQIHFDVMDGCFVPNISFGA-DVIRSLRS-YSDSVFDCHLMISSIDSHI---NIIADAGCDIITFHPES----- 95 (224)
Q Consensus 26 l~~~~~d~iHiDImDg~fvpn~~~~~-~~i~~i~~-~t~~~~dvHLMv~~P~~~i---~~~~~~g~d~i~~H~E~----- 95 (224)
+.+.|+|...- -..-+..+..+. ...+.+.. ..+.|+-+.|...+|+... +.+.+.|+|.|-+-.-+
T Consensus 19 ~~~~g~~~~~T---Emv~a~~~~~~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~d~IDlN~GCP~~~v 95 (231)
T cd02801 19 CRRYGADLVYT---EMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKV 95 (231)
T ss_pred HHHHCCCEEEE---CCEEEHHHHCCCHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
T ss_conf 99989398997---989987765388878987244866780799875898999999999887539999998389996997
Q ss_pred ---------CCC---HHHHHHHHHHC-CCEEEEEEECCC----CHHHHHHHHHHCCEEEEEEEECCCCCCCCCC-HHHHH
Q ss_conf ---------421---58999867764-982599852333----4478998862014028998306776533220-13577
Q gi|254780975|r 96 ---------SPH---IRRSLRTIHAM-GKKTGVAINPET----PVAILEDVIDEIDMILIMTVNPGFGGQQLIE-STIPK 157 (224)
Q Consensus 96 ---------~~~---~~~~i~~i~~~-g~k~Giai~p~T----~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~-~~l~k 157 (224)
..+ +.++++.+++. +..+-+=+..+. ....+-+.+... .+-.++|++....|.+.. --++.
T Consensus 96 ~~~g~Ga~Ll~~p~~v~~iv~~~~~~~~ipVsvKiRlg~~~~~~~~~~~~~l~~~-G~~~ltvH~Rt~~q~~~~~a~~e~ 174 (231)
T cd02801 96 TKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDA-GASALTVHGRTREQRYSGPADWDY 174 (231)
T ss_pred CCCCCCHHHHHCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECCCHHHCCCCCCCHHH
T ss_conf 0898307876297899999999997569947999970778634799999999976-998999835614414677622699
Q ss_pred HHHHHHHHHCCCCEEEEECCCC-HHHHHHHHH-CCCCEEEECHHHHCCCCHH
Q ss_conf 8998654313865269815899-889999996-7998999742663789989
Q gi|254780975|r 158 IRQAKALIGKRSISLEVDGGVT-SRNIKSLVQ-AGADLLVVGSSFFNQKGEI 207 (224)
Q Consensus 158 I~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~-~Gad~~V~Gsaif~~~d~~ 207 (224)
|+++++ ..++.+..-|+|. .+.+.++.+ .|+|-+-+|.+.+.+|-.-
T Consensus 175 i~~~~~---~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~iF 223 (231)
T cd02801 175 IAEIKE---AVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLF 223 (231)
T ss_pred HHHHHH---CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHCCHHH
T ss_conf 999986---5997799838909999999999850999999878887698899
No 222
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=95.63 E-value=0.036 Score=34.21 Aligned_cols=51 Identities=25% Similarity=0.380 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHCC---CCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 357789986543138---652698158998899999967998999742663789
Q gi|254780975|r 154 TIPKIRQAKALIGKR---SISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 154 ~l~kI~~l~~~~~~~---~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
.-.-++++|+.+++. +++|.+-||++.+++..+.+.|+|.+=+||.+.+.+
T Consensus 227 ~~~l~~~vR~~LD~~G~~~vkI~aSggl~e~~I~~l~~~gID~~GVGt~l~~ap 280 (302)
T cd01571 227 FRYLIREVRWALDIRGYKHVKIFVSGGLDEEDIKELEDVGVDAFGVGTAISKAP 280 (302)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 999999999999766988748999699999999999857999998185437998
No 223
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=95.57 E-value=0.044 Score=33.61 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=46.6
Q ss_pred HHHHHHHHHH--CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH------CCCCEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 4789988620--1402899830677653322013577899865431------3865269815899889999996799899
Q gi|254780975|r 123 VAILEDVIDE--IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIG------KRSISLEVDGGVTSRNIKSLVQAGADLL 194 (224)
Q Consensus 123 ~~~i~~~l~~--~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~------~~~~~I~vDGGvn~~~i~~l~~~Gad~~ 194 (224)
++.....+.. .|.|++=+ +.++.++......+.+. ..+..|++-||+|.+|+..+.+.|+|.+
T Consensus 194 ~~~~~~~~~~~~~~~IrlD~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SGgi~~~~i~~~a~~gvd~i 264 (281)
T cd00516 194 LEEALEAAKAGGADGIRLDS---------GSPEELDPAVLILKARAHLDGKGLPRVKIEASGGLDEENIRAYAETGVDVF 264 (281)
T ss_pred HHHHHHHHHCCCCCEEEECC---------CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 99999999549999999797---------995889999999999987632578977999979999999999996798999
Q ss_pred EECHHHHCC
Q ss_conf 974266378
Q gi|254780975|r 195 VVGSSFFNQ 203 (224)
Q Consensus 195 V~Gsaif~~ 203 (224)
.+|+.+.+.
T Consensus 265 ~iG~~~~~~ 273 (281)
T cd00516 265 GVGTLLHSA 273 (281)
T ss_pred EECCCCCCC
T ss_conf 938221788
No 224
>TIGR00262 trpA tryptophan synthase, alpha subunit; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan , : L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H_2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) , . The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25 0dentity to the 45-residue connector of the Saccharomyces cerevisiae polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism. ; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process.
Probab=95.55 E-value=0.16 Score=30.10 Aligned_cols=185 Identities=19% Similarity=0.277 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEE------CCEECCCCCC-----------CHHHHHHHHHC-CCCEEEEEEEE-----
Q ss_conf 8899999999999659989999734------2634584341-----------78999986412-56416856788-----
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDVM------DGCFVPNISF-----------GADVIRSLRSY-SDSVFDCHLMI----- 71 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDIm------Dg~fvpn~~~-----------~~~~i~~i~~~-t~~~~dvHLMv----- 71 (224)
+...-.+.+..+.++|.|.+.+-+- ||.-+..-.. ..+.++.+++. ++.|+-.-...
T Consensus 22 ~~~~~~~~~~~~~~~g~~~~~~g~p~~dp~~dg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 101 (262)
T TIGR00262 22 DLETSLEILKTLVEAGADALELGVPFSDPLADGPTIQAADLRALRAGVNPEKAFELLKKVREKGPNIPIGLLTYYNLIFR 101 (262)
T ss_pred CHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 25578999999986175100004642231124402335667887613537889999998874034341367777767875
Q ss_pred EECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEEEECCCCCCC-
Q ss_conf 512033676404776079997066421589998677649825998523334478998862014-028998306776533-
Q gi|254780975|r 72 SSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMTVNPGFGGQQ- 149 (224)
Q Consensus 72 ~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~V~PG~~Gq~- 149 (224)
..-+.+..++.++|.+-+.+.---...-...++.+++++...-....|.++-+.+..+..... ++.+++ ..|..|..
T Consensus 102 ~g~~~~~~~~~~~g~~~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~y~~~-~~g~~g~~~ 180 (262)
T TIGR00262 102 LGVDEFYAKAKEAGVDGLLVPDLPLEEAGDLLEAAKKHGVDPIFLVAPTTPDERLKAIAEKSEGFVYLVS-VTGVTGARN 180 (262)
T ss_pred HHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEE-CCCCCCHHH
T ss_conf 0368999998861654022024660113578888876076336875488877788988875067133310-014310145
Q ss_pred -CCCHHHHHHHHHHHHHHCCCCEEEEECC-CCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf -2201357789986543138652698158-99889999996799899974266378
Q gi|254780975|r 150 -LIESTIPKIRQAKALIGKRSISLEVDGG-VTSRNIKSLVQAGADLLVVGSSFFNQ 203 (224)
Q Consensus 150 -f~~~~l~kI~~l~~~~~~~~~~I~vDGG-vn~~~i~~l~~~Gad~~V~Gsaif~~ 203 (224)
+.......++.++.... ..+.+--| -+.+.+..+...|++.+++||++.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~---~p~~~g~g~~~~~~~~~~~~~g~~g~~~g~~~~~~ 233 (262)
T TIGR00262 181 RVESALEELLKRLKALSA---KPVLVGFGISKPEHVKELKDAGADGVIVGSALVKI 233 (262)
T ss_pred HHHHHHHHHHHHHHHCCC---CCCHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 544568999998762044---43100146665688999874044530024789998
No 225
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.22 Score=29.17 Aligned_cols=130 Identities=21% Similarity=0.350 Sum_probs=83.1
Q ss_pred HHHHHHCCCC-CCEEEEECCCCC------------CHHHHHHHHHHCCCEE-EEEEEC-CCCHHHHHHHHHH--CCEEEE
Q ss_conf 3367640477-607999706642------------1589998677649825-998523-3344789988620--140289
Q gi|254780975|r 76 SHINIIADAG-CDIITFHPESSP------------HIRRSLRTIHAMGKKT-GVAINP-ETPVAILEDVIDE--IDMILI 138 (224)
Q Consensus 76 ~~i~~~~~~g-~d~i~~H~E~~~------------~~~~~i~~i~~~g~k~-Giai~p-~T~~~~i~~~l~~--~D~vli 138 (224)
.|...+.+++ +|++.+-.-+-+ .+.++++++++....+ .+=|.| .+.+..+...+.. +|.|.+
T Consensus 113 d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~ 192 (310)
T COG0167 113 DYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIA 192 (310)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999975077887999853899977466543999999999999863568659993888899999999999749858999
Q ss_pred E-EE----------------E--CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECH
Q ss_conf 9-83----------------0--6776533220135778998654313865269815899-8899999967998999742
Q gi|254780975|r 139 M-TV----------------N--PGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGS 198 (224)
Q Consensus 139 M-~V----------------~--PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gs 198 (224)
- |+ + =|.||.+..|.++.-|+++++.... ++.|.-=|||. .+.+.+...+||+.+=+||
T Consensus 193 ~NT~~~~~~i~~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~-~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~T 271 (310)
T COG0167 193 INTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGG-DIPIIGVGGIETGEDALEFILAGASAVQVGT 271 (310)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHHCCCCHHEEEE
T ss_conf 700366553012345556676777757510027899999999984289-9748984686969999999982975640411
Q ss_pred HHHCC-CCH
Q ss_conf 66378-998
Q gi|254780975|r 199 SFFNQ-KGE 206 (224)
Q Consensus 199 aif~~-~d~ 206 (224)
+++.. +..
T Consensus 272 al~~~Gp~i 280 (310)
T COG0167 272 ALIYKGPGI 280 (310)
T ss_pred EEEEECCHH
T ss_conf 210208509
No 226
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=95.51 E-value=0.23 Score=29.08 Aligned_cols=144 Identities=17% Similarity=0.234 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCEECCCCCC-------CHHHHHHHHH-CCCCEEEEEEEEEEC----------CHHHH
Q ss_conf 99999999996599899997342634584341-------7899998641-256416856788512----------03367
Q gi|254780975|r 18 RLGEEISNITKAGAKQIHFDVMDGCFVPNISF-------GADVIRSLRS-YSDSVFDCHLMISSI----------DSHIN 79 (224)
Q Consensus 18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~-------~~~~i~~i~~-~t~~~~dvHLMv~~P----------~~~i~ 79 (224)
-+.++++.+.++|+++||+|--+-.+.+.... .-...+.++. -.+..+-+|+.--|+ ...++
T Consensus 156 ~~~~Ei~~L~~aG~~~IQiDeP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~HvC~Gn~~~~~~~~~~y~~i~~ 235 (332)
T cd03311 156 ALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEGGYEPIAE 235 (332)
T ss_pred HHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 99999999998799889952835752678442689999999999998538988689998767887776545562789999
Q ss_pred HHCCCCCCEEEEECCCCC-CHHHHHHHHHHCCCEEEEE-EECCCC----HHH----HHHHHHHCCEEEEEEEEC--CCCC
Q ss_conf 640477607999706642-1589998677649825998-523334----478----998862014028998306--7765
Q gi|254780975|r 80 IIADAGCDIITFHPESSP-HIRRSLRTIHAMGKKTGVA-INPETP----VAI----LEDVIDEIDMILIMTVNP--GFGG 147 (224)
Q Consensus 80 ~~~~~g~d~i~~H~E~~~-~~~~~i~~i~~~g~k~Gia-i~p~T~----~~~----i~~~l~~~D~vliM~V~P--G~~G 147 (224)
.+.+..+|.+.+-+-+.. ...+.++.+.. +.++|+. ++..++ .+. ++..++.++.= -+.+.| ||+-
T Consensus 236 ~l~~~~vd~~~lE~~~~r~~~~~~l~~~~~-~k~v~lGvid~~~~~vE~~eev~~rI~~a~~~v~~e-~l~~~pdCGf~~ 313 (332)
T cd03311 236 YIFELDVDVFFLEYDNSRAGGLEPLKELPY-DKKVGLGVVDVKSPEVESPEEVKDRIEEAAKYVPLE-QLWVSPDCGFAT 313 (332)
T ss_pred HHHHCCCCEEEEEECCCCCCCHHHHHHCCC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHH-HEEECCCCCCCC
T ss_conf 997189988999836887410189984899-987986688279999899999999999999738998-889868889882
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 33220135778998654
Q gi|254780975|r 148 QQLIESTIPKIRQAKAL 164 (224)
Q Consensus 148 q~f~~~~l~kI~~l~~~ 164 (224)
.. ....+.|.+.+.+.
T Consensus 314 ~~-~~~a~~kl~~~~~~ 329 (332)
T cd03311 314 RE-RGNALTKLENMVKA 329 (332)
T ss_pred CC-CCHHHHHHHHHHHH
T ss_conf 87-21789999999985
No 227
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=95.42 E-value=0.24 Score=28.89 Aligned_cols=162 Identities=21% Similarity=0.315 Sum_probs=92.6
Q ss_pred HHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEE---------C-----CHHHHHHCCCCCCE
Q ss_conf 999996599899997342634584341789999864125641685678851---------2-----03367640477607
Q gi|254780975|r 23 ISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISS---------I-----DSHINIIADAGCDI 88 (224)
Q Consensus 23 i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~---------P-----~~~i~~~~~~g~d~ 88 (224)
+....++|+|.+- .+|+-=+-.+|=++-.++..++..+ +-+|.|+-. + ++-|+.+.++|++=
T Consensus 14 l~~A~~~GAdRiE--LC~~La~GG~TPSyG~~k~a~~~~~--ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~G 89 (241)
T COG3142 14 LLAAQAAGADRIE--LCDALAEGGLTPSYGVIKEAVELSK--IPVYVMIRPRGGDFVYSDDELEIMLEDIRLARELGVQG 89 (241)
T ss_pred HHHHHHCCCCEEE--HHHCCCCCCCCCCHHHHHHHHHHCC--CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999983975110--2212035897887889999986369--85489970588870027589999999999999839983
Q ss_pred EEEECCCCC---C---HHHHHHHHHHCCCEEEEEEE--CCCCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 999706642---1---58999867764982599852--33344789988620-140289983067765332201357789
Q gi|254780975|r 89 ITFHPESSP---H---IRRSLRTIHAMGKKTGVAIN--PETPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIR 159 (224)
Q Consensus 89 i~~H~E~~~---~---~~~~i~~i~~~g~k~Giai~--p~T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~ 159 (224)
|.+-+=+.+ | +++.+.+....+.-+--|+. |+ |.+.++.+++. +.+|| | +||+ .+.++-..
T Consensus 90 VV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d-~~~ale~li~~Gv~RIL--T-----sGg~--~sa~eg~~ 159 (241)
T COG3142 90 VVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPD-PLEALEQLIELGVERIL--T-----SGGK--ASALEGLD 159 (241)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHCCC-HHHHHHHHHHCCCCEEE--C-----CCCC--CCHHHHHH
T ss_conf 7985466898638899999998706876243166563379-99999999976973786--4-----7886--75556079
Q ss_pred HHHHHHHCC--CCEEEEECCCCHHHHHHH-HHCCCCEEEECH
Q ss_conf 986543138--652698158998899999-967998999742
Q gi|254780975|r 160 QAKALIGKR--SISLEVDGGVTSRNIKSL-VQAGADLLVVGS 198 (224)
Q Consensus 160 ~l~~~~~~~--~~~I~vDGGvn~~~i~~l-~~~Gad~~V~Gs 198 (224)
.++++.... .+.|.+-|||+.+|+..+ ...|+.-+=++.
T Consensus 160 ~l~~li~~a~gri~Im~GaGV~~~N~~~l~~~tg~~e~H~s~ 201 (241)
T COG3142 160 LLKRLIEQAKGRIIIMAGAGVRAENIAELVLLTGVTEVHGSA 201 (241)
T ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHCC
T ss_conf 999999983698799867988989999999850803200024
No 228
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.36 E-value=0.1 Score=31.34 Aligned_cols=167 Identities=20% Similarity=0.331 Sum_probs=103.2
Q ss_pred ECCEECCCCCCC----HHHHHHHHHC--CCCEEEEEEEEEE-------CCHH---HHHHCCCCCCEEEEECCC--C----
Q ss_conf 426345843417----8999986412--5641685678851-------2033---676404776079997066--4----
Q gi|254780975|r 39 MDGCFVPNISFG----ADVIRSLRSY--SDSVFDCHLMISS-------IDSH---INIIADAGCDIITFHPES--S---- 96 (224)
Q Consensus 39 mDg~fvpn~~~~----~~~i~~i~~~--t~~~~dvHLMv~~-------P~~~---i~~~~~~g~d~i~~H~E~--~---- 96 (224)
-|...++.++|+ -...+.+++. ...|+-|-+.-+. .+.| ++++... +|++++-.-+ +
T Consensus 105 ~~~aliNr~GfnN~G~~~~~~~L~~~~~~~~~lGvnIg~nk~t~~e~~~~Dy~~~~~~l~~~-aDy~~INiSsPNT~glr 183 (336)
T PRK05286 105 EDEALINRMGFNNEGADALAERLKKAKPYKGPLGINIGKNKDTPLEDAVDDYLICLRKLYPY-ADYFTVNISSPNTPGLR 183 (336)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCC
T ss_conf 77637850577986899999999850567886589976237884166899999999998263-77899975689986520
Q ss_pred -----CCHHHHHHHHHHC----CCE--EEEEEECCCCHHHHHHHHHH-----CCEEEEE-E------------EEC-CCC
Q ss_conf -----2158999867764----982--59985233344789988620-----1402899-8------------306-776
Q gi|254780975|r 97 -----PHIRRSLRTIHAM----GKK--TGVAINPETPVAILEDVIDE-----IDMILIM-T------------VNP-GFG 146 (224)
Q Consensus 97 -----~~~~~~i~~i~~~----g~k--~Giai~p~T~~~~i~~~l~~-----~D~vliM-~------------V~P-G~~ 146 (224)
+.+.+.++.+++. +.+ +=+-|.|+.+-+.+..+++. +|.|.+- | .+. |-|
T Consensus 184 ~lq~~~~L~~ll~~v~~~~~~~~~~~PI~vKisPDl~~~~l~~i~~~~~~~~idGii~tNTt~~r~~l~~~~~~~~GGLS 263 (336)
T PRK05286 184 DLQAGEALDELLAALKEAQAELGKYVPLLLKIAPDLSDEELDDIADLALEHGIDGIIATNTTLDRSGLEGPNAEEAGGLS 263 (336)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 00466999999999999998437888648832888887899999999998198689995886766445665556668746
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHH-HHCCCCHH
Q ss_conf 53322013577899865431386526981589-988999999679989997426-63789989
Q gi|254780975|r 147 GQQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSS-FFNQKGEI 207 (224)
Q Consensus 147 Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsa-if~~~d~~ 207 (224)
|.+..+.+++.++++++..+. .+.|.-=||| +.+.+.+...+||+.+=+.|+ +|+.+...
T Consensus 264 G~pl~~~s~~~v~~~~~~~~~-~~pIIgvGGI~s~~da~~~i~aGAslVQlyTgliy~GP~lv 325 (336)
T PRK05286 264 GRPLFERSTEVIRRLYKELGG-RLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLV 325 (336)
T ss_pred CHHHHHHHHHHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHH
T ss_conf 406789999999999997399-97099989989999999999869968874167872190799
No 229
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=95.34 E-value=0.26 Score=28.72 Aligned_cols=121 Identities=20% Similarity=0.317 Sum_probs=72.5
Q ss_pred EEEEEEEE---C-CHHHHHHCCC-C---------CCEEEE---ECCCCCCHHHHHHHHHHCCCEEEEEEECCCC---HHH
Q ss_conf 85678851---2-0336764047-7---------607999---7066421589998677649825998523334---478
Q gi|254780975|r 66 DCHLMISS---I-DSHINIIADA-G---------CDIITF---HPESSPHIRRSLRTIHAMGKKTGVAINPETP---VAI 125 (224)
Q Consensus 66 dvHLMv~~---P-~~~i~~~~~~-g---------~d~i~~---H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~---~~~ 125 (224)
.+++.--. | .++++||+=. | -|+|-+ |.-....+++.++..|+. ++.+..-+-+ +|+
T Consensus 122 ~~~i~dTRKTTPGLR~~EKyAVr~GGG~nHR~~LsDavmiKDNHi~~~Gs~~~Av~~aR~~---~~~~~kiEVEVenlE~ 198 (276)
T TIGR00078 122 KVRIADTRKTTPGLRLLEKYAVRVGGGDNHRLGLSDAVMIKDNHIAAAGSIEKAVKRARAA---LPFAKKIEVEVENLEE 198 (276)
T ss_pred CEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECEEECCCCHHHHHHHHHHH---CCCCCEEEEEECCHHH
T ss_conf 3389985257874301023135535885786888773897502066068989999999984---8998079986289899
Q ss_pred HHHHH-HHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 99886-20140289983067765332201357789986543138--652698158998899999967998999742663
Q gi|254780975|r 126 LEDVI-DEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKR--SISLEVDGGVTSRNIKSLVQAGADLLVVGSSFF 201 (224)
Q Consensus 126 i~~~l-~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~--~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif 201 (224)
+..-+ .-+|.||+ -.|.|..+ ++.-++++.+ ++.+|+=|||+.+|++.+...|+|.+-+|.-.-
T Consensus 199 a~eA~~AGADiImL---------DNm~p~~~---~~av~~~~~~~p~~~~EaSGGitl~n~~~ya~~gVD~IS~G~lTh 265 (276)
T TIGR00078 199 AEEAAEAGADIIML---------DNMKPEEI---KEAVELLKGRNPNVLVEASGGITLDNIEEYAETGVDVISSGALTH 265 (276)
T ss_pred HHHHHHCCCCEEEC---------CCCCHHHH---HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCEEECCCHHH
T ss_conf 99999709959980---------69894799---999999970299089998369987899998408975883274112
No 230
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=95.18 E-value=0.15 Score=30.15 Aligned_cols=95 Identities=17% Similarity=0.268 Sum_probs=60.3
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCC-H-HHHHHHHHHHHHHCCC---CEEE
Q ss_conf 589998677649825998523334478998862014028998306776533220-1-3577899865431386---5269
Q gi|254780975|r 99 IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIE-S-TIPKIRQAKALIGKRS---ISLE 173 (224)
Q Consensus 99 ~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~-~-~l~kI~~l~~~~~~~~---~~I~ 173 (224)
+.+.++-++..|-+.. ++..+|+=+....++... +.+. ++..+ . .-.-++++|+.+++.+ ++|.
T Consensus 222 i~~al~va~~~g~~L~-gVRLDTsg~l~d~~~~~~---------~~~~-~~~~~~Gv~~~li~~vR~~LD~aG~~~vKIv 290 (355)
T PRK07188 222 ITDALKVAREFGDKLK-GVRVDTSKNLIDKYFIRN---------PEVL-GTFDPYGVNPYLIFALRKALDENGGKHVKII 290 (355)
T ss_pred HHHHHHHHHHHCCCCC-EEEECCCCCHHHCCCCCC---------CCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 9999999998386677-899778762222000112---------2345-6522257489999999999976799871799
Q ss_pred EECCCCHHHHHHHHHCCC--CEEEECHHHHCCC
Q ss_conf 815899889999996799--8999742663789
Q gi|254780975|r 174 VDGGVTSRNIKSLVQAGA--DLLVVGSSFFNQK 204 (224)
Q Consensus 174 vDGGvn~~~i~~l~~~Ga--d~~V~Gsaif~~~ 204 (224)
+-||++.+.+..+.++|+ |.+=+||+|++.+
T Consensus 291 aSgglde~~I~~l~~~gapID~fGVGt~l~~~~ 323 (355)
T PRK07188 291 VSSGFDEKKIKEFEKQNVPVDIYGVGSSLLKIN 323 (355)
T ss_pred EECCCCHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 968999999999997799701895067667887
No 231
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=94.91 E-value=0.34 Score=27.93 Aligned_cols=194 Identities=13% Similarity=0.233 Sum_probs=108.6
Q ss_pred CCCCEEECHHHHCCCHHHHHHHHHHHHHCCCCEE-EEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECC----
Q ss_conf 9798188170632588999999999996599899-99734263458434178999986412564168567885120----
Q gi|254780975|r 1 MTPSIQIVPSILAADFSRLGEEISNITKAGAKQI-HFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSID---- 75 (224)
Q Consensus 1 M~k~~~IspSil~~d~~~l~~~i~~l~~~~~d~i-HiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~---- 75 (224)
|.|++-++===|..+.....+-++.+.+. .... ++|+ ..+|.+++=.+..+.++ -++ +++-.+|..
T Consensus 1 MrkkiIiaNWKmn~~~~~~~~~~~~l~~~-~~~~~~~~v---~i~Pp~~~L~~~~~~~~-~~~----i~igaQn~~~~~~ 71 (251)
T PRK00042 1 MRKPIIAGNWKMNKTLAEAKELVEELAAL-LPDADGVEV---AVAPPFTYLSSVKEALE-GSN----LKLGAQNVHFEDS 71 (251)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCCCEE---EEECCHHHHHHHHHHHC-CCC----CEEEEEECCCCCC
T ss_conf 99888999735488999999999999974-666689879---99799999999999827-999----6799725787777
Q ss_pred -HH-----HHHHCCCCCCEEEE--------ECCCCCCHHHHHHHHHHCCCEEEEEEECC-------CCHH----HHHHHH
Q ss_conf -33-----67640477607999--------70664215899986776498259985233-------3447----899886
Q gi|254780975|r 76 -SH-----INIIADAGCDIITF--------HPESSPHIRRSLRTIHAMGKKTGVAINPE-------TPVA----ILEDVI 130 (224)
Q Consensus 76 -~~-----i~~~~~~g~d~i~~--------H~E~~~~~~~~i~~i~~~g~k~Giai~p~-------T~~~----~i~~~l 130 (224)
-| .+++.+.|++++.+ |-|+.+.+.+-+..+.+.|..+-+.+.-. ...+ .+...+
T Consensus 72 Ga~TGeiSa~mL~d~G~~yviiGHSERR~~f~Et~~~i~~K~~~al~~~l~pI~CIGE~~~~r~~g~~~~~l~~Ql~~~l 151 (251)
T PRK00042 72 GAFTGEISPAMLKELGVKYVIIGHSERRTYFGETDELVNKKVKAALKHGLTPILCVGETLEEREAGKTEEVVARQLEAAL 151 (251)
T ss_pred CCCCCCCCHHHHHHCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHH
T ss_conf 67757560999997599979975588776469987999999999998699289993673886546787899999999999
Q ss_pred HHCCE----EEEEEEEC----CCCCCCCCCHHHHHH-HHHHHHHH----C--CCCEEEEECCCCHHHHHHHHH-CCCCEE
Q ss_conf 20140----28998306----776533220135778-99865431----3--865269815899889999996-799899
Q gi|254780975|r 131 DEIDM----ILIMTVNP----GFGGQQLIESTIPKI-RQAKALIG----K--RSISLEVDGGVTSRNIKSLVQ-AGADLL 194 (224)
Q Consensus 131 ~~~D~----vliM~V~P----G~~Gq~f~~~~l~kI-~~l~~~~~----~--~~~~I~vDGGvn~~~i~~l~~-~Gad~~ 194 (224)
+.++. =++..=+| | +|+.-.++-++.+ +.+|+.+. . .++.|---|+||.+|+.++.. .++|-+
T Consensus 152 ~~~~~~~~~~iiIAYEPvWAIG-TG~~as~~~i~~~~~~Ir~~l~~~~~~~~~~i~IlYGGSVn~~N~~~i~~~~~vDG~ 230 (251)
T PRK00042 152 AGLGAEDFANLVIAYEPVWAIG-TGKTATPEQAQEVHAFIRKVLAELYAEVAEKVRILYGGSVKPDNAAELFAQPDIDGA 230 (251)
T ss_pred HCCCHHHCCCEEEEECCHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCEE
T ss_conf 6689877053599967577507-999999999999999999999986052305753887177899899999668899979
Q ss_pred EECHHHHCCC
Q ss_conf 9742663789
Q gi|254780975|r 195 VVGSSFFNQK 204 (224)
Q Consensus 195 V~Gsaif~~~ 204 (224)
-+|+|=.+.+
T Consensus 231 LVGgASL~~~ 240 (251)
T PRK00042 231 LVGGASLKAE 240 (251)
T ss_pred EECHHHCCHH
T ss_conf 8515867989
No 232
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.88 E-value=0.35 Score=27.89 Aligned_cols=122 Identities=21% Similarity=0.327 Sum_probs=75.7
Q ss_pred HHHHHHCCCC--CCEEEEECCC--CCCHHHHHHHHHHCCCEE-EEEEECCCCHHHHHHHHH-HCCEEEEEEEECCC----
Q ss_conf 3367640477--6079997066--421589998677649825-998523334478998862-01402899830677----
Q gi|254780975|r 76 SHINIIADAG--CDIITFHPES--SPHIRRSLRTIHAMGKKT-GVAINPETPVAILEDVID-EIDMILIMTVNPGF---- 145 (224)
Q Consensus 76 ~~i~~~~~~g--~d~i~~H~E~--~~~~~~~i~~i~~~g~k~-Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~---- 145 (224)
+.++.+.+++ ++.|++-..+ .....+.++++|+.--.. -+|=|-.|+ +..+.+++ -+|.|.+ ++-||-
T Consensus 100 ~~i~~l~~~~~~~~~i~iDvAhG~~~~~~~~i~~ik~~~~~~~iiaGNVaT~-e~~~~L~~~Gad~VkV-GIG~Gs~CTT 177 (326)
T PRK05458 100 DFIDQLAAEGLTPEYITIDIAHGHSDSVINMIKHIKKHLPETFVIAGNVGTP-EAVRELENAGADATKV-GIGPGKVCIT 177 (326)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCH-HHHHHHHHCCCCEEEE-CCCCCCCCCC
T ss_conf 9999998569997779998056442899999999998789983996543189-9999999749999996-7779875203
Q ss_pred -----CCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf -----6533-220135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r 146 -----GGQQ-LIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 146 -----~Gq~-f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
-|-| + .+.-|.+-.+.. ...|..|||++ .-.+.+...+|||.+-+||.+-+.++
T Consensus 178 R~~tGvG~p~~---q~sai~~ca~~~---~~~iiaDGGi~~~GDi~KAla~GAd~VM~G~~~Ag~~E 238 (326)
T PRK05458 178 KIKTGFGTGGW---QLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEE 238 (326)
T ss_pred CCCCCCCCCHH---HHHHHHHHHHHH---CCCEEEECCCCCCCHHHHHHHCCCCEEEECCHHCCCCC
T ss_conf 50135477589---999999999972---79779736858747899998648988986712237777
No 233
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=94.80 E-value=0.37 Score=27.75 Aligned_cols=165 Identities=16% Similarity=0.205 Sum_probs=102.8
Q ss_pred HHHHHHHHCCCCEEEEEEECCEEC-----CCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCC
Q ss_conf 999999965998999973426345-----843417899998641256416856788512033676404776079997066
Q gi|254780975|r 21 EEISNITKAGAKQIHFDVMDGCFV-----PNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPES 95 (224)
Q Consensus 21 ~~i~~l~~~~~d~iHiDImDg~fv-----pn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~ 95 (224)
+-++.|.+.|++.|-+ |.|| |.+.=..+.+..+++.....+.. .+-+ .+-++...++|++.+.+-.-+
T Consensus 30 ~ia~~L~~~Gv~~IEv----gsfvspk~vP~~~d~~ev~~~i~~~~~~~~~~--l~~n-~~g~~~A~~~g~~~i~i~~~~ 102 (287)
T PRK05692 30 ALIDRLSAAGLSYIEV----ASFVSPKWVPQMADAAEVMAGIQRRPGVTYAA--LTPN-LKGLEAALAAGADEVAVFASA 102 (287)
T ss_pred HHHHHHHHCCCCEEEE----CCCCCCCCCHHHCCHHHHHHHHHCCCCCEEEE--ECCC-HHHHHHHHHCCCCEEEEEEEC
T ss_conf 9999999849999996----68778230213167999998764067967866--4364-042799997798989999741
Q ss_pred ----------------CCCHHHHHHHHHHCCCEEEEEEE-----C---CCCHHHHHHHHHH-----CCEEEEEEEECCCC
Q ss_conf ----------------42158999867764982599852-----3---3344789988620-----14028998306776
Q gi|254780975|r 96 ----------------SPHIRRSLRTIHAMGKKTGVAIN-----P---ETPVAILEDVIDE-----IDMILIMTVNPGFG 146 (224)
Q Consensus 96 ----------------~~~~~~~i~~i~~~g~k~Giai~-----p---~T~~~~i~~~l~~-----~D~vliM~V~PG~~ 146 (224)
.+.+.+.++++++.|.++-..+. | .++.+.+..++.. +|.|.+ +---
T Consensus 103 Sd~h~~~nl~~t~~e~l~~~~~~i~~a~~~g~~v~~~i~~afg~p~~~~~~~~~l~~~~~~~~~~Ga~~I~l----aDT~ 178 (287)
T PRK05692 103 SEAFSQKNINCSIAESLARFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCDEISL----GDTI 178 (287)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCC
T ss_conf 799999874799999999999999999976987999874013676468648999999999998579978544----7655
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCC--CEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 53322013577899865431386--526981589988999999679989997
Q gi|254780975|r 147 GQQLIESTIPKIRQAKALIGKRS--ISLEVDGGVTSRNIKSLVQAGADLLVV 196 (224)
Q Consensus 147 Gq~f~~~~l~kI~~l~~~~~~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~ 196 (224)
|..-=..+.+.++.+++.++... +.+.=|-|.-..|.-...++||+.+=+
T Consensus 179 G~a~P~~v~~~i~~v~~~~~~~~i~~H~Hnd~Gma~AN~laAv~aGa~~vd~ 230 (287)
T PRK05692 179 GVGTPGQVRRVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDA 230 (287)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 6669999999999999866887235674487306999999999809998988
No 234
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=94.70 E-value=0.35 Score=27.91 Aligned_cols=171 Identities=16% Similarity=0.172 Sum_probs=98.2
Q ss_pred HHHHHHHHCCCCEEE-EEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCH
Q ss_conf 999999965998999-9734263458434178999986412564168567885120336764047760799970664215
Q gi|254780975|r 21 EEISNITKAGAKQIH-FDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHI 99 (224)
Q Consensus 21 ~~i~~l~~~~~d~iH-iDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~ 99 (224)
+..+...+.|+|-+- +||.-.+- +-..-.+.+++..+...+|+-|-==+... .-++++..+|+|-|++-.-+..+|
T Consensus 34 elA~~Y~e~GADElvFlDItAs~~--gr~~~~~vv~~~A~~vfiPltVGGGI~s~-eD~~~ll~aGADKVSINsaAv~~p 110 (256)
T COG0107 34 ELAKRYNEEGADELVFLDITASSE--GRETMLDVVERVAEQVFIPLTVGGGIRSV-EDARKLLRAGADKVSINSAAVKDP 110 (256)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCC--CCCCHHHHHHHHHHHCEEEEEECCCCCCH-HHHHHHHHCCCCEEEECHHHHCCH
T ss_conf 999999775997699986225656--66207999999973030324754775888-999999976997465284675095
Q ss_pred HHHHHHHHHCCCEE-EEEEEC--------------------CCCHHHHHHHHHH----CCEEEEEEEECCCCCCCCCCHH
Q ss_conf 89998677649825-998523--------------------3344789988620----1402899830677653322013
Q gi|254780975|r 100 RRSLRTIHAMGKKT-GVAINP--------------------ETPVAILEDVIDE----IDMILIMTVNPGFGGQQLIEST 154 (224)
Q Consensus 100 ~~~i~~i~~~g~k~-Giai~p--------------------~T~~~~i~~~l~~----~D~vliM~V~PG~~Gq~f~~~~ 154 (224)
+-+-+.....|.++ -++|.+ .|.++.++.-... .--||+-+.+---..+.|.-..
T Consensus 111 ~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~eWa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l 190 (256)
T COG0107 111 ELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLEL 190 (256)
T ss_pred HHHHHHHHHHCCCEEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH
T ss_conf 99999999838812999987554268998767999668975688579999999997388548786355656536757999
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCC-CCEEEECHHH
Q ss_conf 577899865431386526981589-988999999679-9899974266
Q gi|254780975|r 155 IPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAG-ADLLVVGSSF 200 (224)
Q Consensus 155 l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~G-ad~~V~Gsai 200 (224)
+.+|++ .-++++..-||. +.++..+....| ||-.-..|-.
T Consensus 191 ~~~v~~------~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiF 232 (256)
T COG0107 191 TRAVRE------AVNIPVIASGGAGKPEHFVEAFTEGKADAALAASIF 232 (256)
T ss_pred HHHHHH------HCCCCEEECCCCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999996------488788911898968899999981570088764433
No 235
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=94.67 E-value=0.39 Score=27.56 Aligned_cols=145 Identities=15% Similarity=0.286 Sum_probs=85.6
Q ss_pred HHHCCCCE-EEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHH-HHHCC--CEEEEEEEC-------CCCHHH
Q ss_conf 64125641-68567885120336764047760799970664215899986-77649--825998523-------334478
Q gi|254780975|r 57 LRSYSDSV-FDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRT-IHAMG--KKTGVAINP-------ETPVAI 125 (224)
Q Consensus 57 i~~~t~~~-~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~-i~~~g--~k~Giai~p-------~T~~~~ 125 (224)
.....+.+ ++-|+--.=..+.+...+.. +|+ +|.=-...+..-++. ....+ .++-|=+|- +++++.
T Consensus 65 ~~~l~~~~~i~WHfIG~LQsNK~k~v~~~-~~~--ihSlDr~klA~~l~kra~~~~~~l~v~iQVNi~~E~sK~G~~~~e 141 (228)
T COG0325 65 IEALKDLPDIEWHFIGPLQSNKVKLVAEN-FDW--IHSLDRLKLAKELNKRALELPKPLNVLIQVNISGEESKSGVPPEE 141 (228)
T ss_pred HHHCCCCCCEEEEEECHHHHHHHHHHHHH-CCE--EEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHH
T ss_conf 99647678817999641135679999842-423--333077999999998997379886389999438862337999899
Q ss_pred HHHHHHH------CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCHHHHHHHHHCCCCEEEECH
Q ss_conf 9988620------140289983067765332201357789986543138652-698158998899999967998999742
Q gi|254780975|r 126 LEDVIDE------IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS-LEVDGGVTSRNIKSLVQAGADLLVVGS 198 (224)
Q Consensus 126 i~~~l~~------~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~-I~vDGGvn~~~i~~l~~~Gad~~V~Gs 198 (224)
+..++.. +...-+||+-|=-....-....+.+++++++-..+.+.. -+.-=|.+ ...+..+++|++.+=+||
T Consensus 142 ~~~~~~~~~~~~~L~l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~LSMGMS-~D~e~AI~~GaT~VRIGt 220 (228)
T COG0325 142 LDELAQEVQELPNLELRGLMTIPPLTDDPEEIFAVFRKLRKLFDELKAKYPPIDELSMGMS-NDYEIAIAEGATMVRIGT 220 (228)
T ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC-CCHHHHHHCCCCEEEECH
T ss_conf 9999999974899767577741799899799999999999999999874589785268676-259999985998899707
Q ss_pred HHHCCCC
Q ss_conf 6637899
Q gi|254780975|r 199 SFFNQKG 205 (224)
Q Consensus 199 aif~~~d 205 (224)
+||+..+
T Consensus 221 aiFg~r~ 227 (228)
T COG0325 221 AIFGARD 227 (228)
T ss_pred HHHCCCC
T ss_conf 8618789
No 236
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=94.63 E-value=0.14 Score=30.34 Aligned_cols=61 Identities=25% Similarity=0.392 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
Q ss_conf 3577899865431386526981589-9889999996799899974266378998999999999
Q gi|254780975|r 154 TIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLND 215 (224)
Q Consensus 154 ~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~ 215 (224)
.++.+++.+++ .+..+---.-||| +.-....+-..|+|-+-+||.||++.||...++.+.+
T Consensus 182 p~elv~~v~~~-grLPVvnFaAGGiATPADAALmMqLG~dGVFVGSGIFKS~dP~krA~AIV~ 243 (283)
T cd04727 182 PYELVKETAKL-GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVE 243 (283)
T ss_pred CHHHHHHHHHH-CCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 58999999997-897636642678588377999997289878877654578999999999999
No 237
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=94.57 E-value=0.41 Score=27.40 Aligned_cols=143 Identities=15% Similarity=0.174 Sum_probs=80.2
Q ss_pred ECCHHHHHHCCCCCCEEEEECCCCCC---HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH--HCCEEEEEEEECC---
Q ss_conf 12033676404776079997066421---589998677649825998523334478998862--0140289983067---
Q gi|254780975|r 73 SIDSHINIIADAGCDIITFHPESSPH---IRRSLRTIHAMGKKTGVAINPETPVAILEDVID--EIDMILIMTVNPG--- 144 (224)
Q Consensus 73 ~P~~~i~~~~~~g~d~i~~H~E~~~~---~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~--~~D~vliM~V~PG--- 144 (224)
+|.++...+.++|||-||+|...... ..++....+.....+-+=.+|. +.+..+.. ..+++.+.-..|+
T Consensus 22 d~~~~a~~~~~~GadgITvHlR~DrRHI~~~Dv~~l~~~~~~~lNlE~a~~---~emi~ia~~~kP~~vtLVPe~r~elT 98 (234)
T cd00003 22 DPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRTELNLEMAPT---EEMLEIALEVKPHQVTLVPEKREELT 98 (234)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEECCCCC---HHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 999999999983998589524887666754579999986585546612793---89999999849987898788878641
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCHHHHHHHHHCCCCEEEECHHHH-CCCCHHHHHHHHHHHHHHH
Q ss_conf -765332201357789986543138652--698158998899999967998999742663-7899899999999999978
Q gi|254780975|r 145 -FGGQQLIESTIPKIRQAKALIGKRSIS--LEVDGGVTSRNIKSLVQAGADLLVVGSSFF-NQKGEISYAKRLNDLKKSA 220 (224)
Q Consensus 145 -~~Gq~f~~~~l~kI~~l~~~~~~~~~~--I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif-~~~d~~~~~~~l~~l~~~a 220 (224)
-+|+.+.. -.++++.+-+.+.+.++. +-+|=. .+.+....+.|||.+=.=+.=| +..+..+..+.+..++++|
T Consensus 99 TegGld~~~-~~~~L~~~i~~lk~~~IrvSLFIDPd--~~qi~~a~~~Gad~VElhTG~Ya~a~~~~~~~~el~~i~~aa 175 (234)
T cd00003 99 TEGGLDVAG-QAEKLKPIIERLKDAGIRVSLFIDPD--PEQIEAAKEVGADRVELHTGPYANAYDKAEREAELERIAKAA 175 (234)
T ss_pred CCCCCCCCC-HHHHHHHHHHHHHHCCCEEEEEECCC--HHHHHHHHHHCCCEEEEECHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 788926654-78899999999986598279972798--789999998493999982478786348103999999999999
Q ss_pred H
Q ss_conf 6
Q gi|254780975|r 221 L 221 (224)
Q Consensus 221 ~ 221 (224)
.
T Consensus 176 ~ 176 (234)
T cd00003 176 K 176 (234)
T ss_pred H
T ss_conf 9
No 238
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=94.57 E-value=0.41 Score=27.40 Aligned_cols=147 Identities=18% Similarity=0.312 Sum_probs=99.1
Q ss_pred HHHHHHHHCCCCE------------EEEEEEE---EECCHHHHHHCCC-CCCEEEEECCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf 9999864125641------------6856788---5120336764047-7607999706642158999867764982599
Q gi|254780975|r 52 DVIRSLRSYSDSV------------FDCHLMI---SSIDSHINIIADA-GCDIITFHPESSPHIRRSLRTIHAMGKKTGV 115 (224)
Q Consensus 52 ~~i~~i~~~t~~~------------~dvHLMv---~~P~~~i~~~~~~-g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Gi 115 (224)
+.+++++..+..| +-+.+|+ ..-+..++-+.+. |.-.++++.-. .+..++..+++.|.++..
T Consensus 55 ~~i~~~~~~~~~p~~~~~f~~~~~~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~--~~~~~i~~~~~~g~~v~~ 132 (336)
T COG2070 55 AEIRKIRALTDKPFVANNFGSAPAPVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGA--PPAEFVARLKAAGIKVIH 132 (336)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEECCCC--CCHHHHHHHHHCCCEEEE
T ss_conf 999999986348420135455555531103534655345631225642897679715899--958899999974985898
Q ss_pred EEECCCCHHHHHHHHH-HCCEEEEEEEEC-CCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCC
Q ss_conf 8523334478998862-014028998306-77653-3220135778998654313865269815899-889999996799
Q gi|254780975|r 116 AINPETPVAILEDVID-EIDMILIMTVNP-GFGGQ-QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGA 191 (224)
Q Consensus 116 ai~p~T~~~~i~~~l~-~~D~vliM~V~P-G~~Gq-~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Ga 191 (224)
.+ |...+-..... =+|.|..-+-+- |..|. ...+.++.-+.++++.+.. +.+..-|||- .+-+.-....||
T Consensus 133 ~v---~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~--iPViAAGGI~dg~~i~AAlalGA 207 (336)
T COG2070 133 SV---ITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDG--IPVIAAGGIADGRGIAAALALGA 207 (336)
T ss_pred EE---CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC--CCEEEECCCCCHHHHHHHHHHCC
T ss_conf 50---88999999981799889943776778689988773188899999998548--97898768688699999998441
Q ss_pred CEEEECHHHHCCCC
Q ss_conf 89997426637899
Q gi|254780975|r 192 DLLVVGSSFFNQKG 205 (224)
Q Consensus 192 d~~V~Gsaif~~~d 205 (224)
+-+..||...-.++
T Consensus 208 ~gVq~GT~Fl~t~E 221 (336)
T COG2070 208 DGVQMGTRFLATKE 221 (336)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 68554125421403
No 239
>PRK04180 pyridoxine biosynthesis protein; Provisional
Probab=94.56 E-value=0.13 Score=30.63 Aligned_cols=61 Identities=23% Similarity=0.361 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
Q ss_conf 3577899865431386-5269815899889999996799899974266378998999999999
Q gi|254780975|r 154 TIPKIRQAKALIGKRS-ISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLND 215 (224)
Q Consensus 154 ~l~kI~~l~~~~~~~~-~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~ 215 (224)
.++.+++.+++ .+.. +....-|=-+.-....+-..|+|-+-+||.||++.||...++.+.+
T Consensus 191 p~elv~~v~~~-grLPVvnFaAGGiATPADAALmMqLG~dGVFVGSGIFKS~dP~~rA~AIV~ 252 (293)
T PRK04180 191 PYELVKEVARL-GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGNPEKRAKAIVE 252 (293)
T ss_pred CHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 68999999984-887625532577578056999987178746754543467998899999999
No 240
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=94.50 E-value=0.43 Score=27.31 Aligned_cols=124 Identities=15% Similarity=0.264 Sum_probs=71.0
Q ss_pred HHCCCCCCEEEEECCCC---------------------------CCHHHHHHHHHHC-C--CEEEEEEECCC--------
Q ss_conf 64047760799970664---------------------------2158999867764-9--82599852333--------
Q gi|254780975|r 80 IIADAGCDIITFHPESS---------------------------PHIRRSLRTIHAM-G--KKTGVAINPET-------- 121 (224)
Q Consensus 80 ~~~~~g~d~i~~H~E~~---------------------------~~~~~~i~~i~~~-g--~k~Giai~p~T-------- 121 (224)
...++|.|-|-+|.-+. .-+.++++.+|+. | .-+|+=+++..
T Consensus 158 rA~~AGfDgVEIH~ah~GyLl~qFlSp~~N~RtDeYGGSlenR~Rf~~Evi~aVR~~vg~d~~v~~R~s~~~~~~~~~~g 237 (382)
T cd02931 158 IAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQG 237 (382)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
T ss_conf 99984999899624530358998548735898864589878856189999999999709887389996563345665457
Q ss_pred --C----------HHHH---HHHHHH--CCEEEEEEE---------ECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf --4----------4789---988620--140289983---------0677653322013577899865431386526981
Q gi|254780975|r 122 --P----------VAIL---EDVIDE--IDMILIMTV---------NPGFGGQQLIESTIPKIRQAKALIGKRSISLEVD 175 (224)
Q Consensus 122 --~----------~~~i---~~~l~~--~D~vliM~V---------~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vD 175 (224)
| ++.. .+++.. +|++.+=+- .|-+..+.+.. ...+.+|+ .-++.+.+=
T Consensus 238 ~~~~~~~~~~g~~l~e~~~~~~~l~~~G~D~l~vs~g~~~~~~~~~~~~~~~~g~~~---~~a~~ik~---~~~iPvi~~ 311 (382)
T cd02931 238 ALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYL---PYCKALKE---VVDVPVIMA 311 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHCCCCCCCCCCCCCH---HHHHHHHH---HCCCCEEEE
T ss_conf 885777888763599999999999983988896477742110103797546763148---99999998---739988996
Q ss_pred CCCC-HHHHHHHHHCC-CCEEEECHHHHCCCCHHHH
Q ss_conf 5899-88999999679-9899974266378998999
Q gi|254780975|r 176 GGVT-SRNIKSLVQAG-ADLLVVGSSFFNQKGEISY 209 (224)
Q Consensus 176 GGvn-~~~i~~l~~~G-ad~~V~Gsaif~~~d~~~~ 209 (224)
||++ .+.+.++++.| +|.+..|.++..+||....
T Consensus 312 G~i~~p~~ae~~l~~g~aD~V~~gR~~iadP~~v~K 347 (382)
T cd02931 312 GRMEDPELASEAINEGIADMISLGRPLLADPDVVNK 347 (382)
T ss_pred CCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHH
T ss_conf 896999999999986996543622898869359999
No 241
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=94.45 E-value=0.16 Score=30.06 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=54.0
Q ss_pred HHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 7899886201402899830677653322013577899865431386526981589-988999999679989997426637
Q gi|254780975|r 124 AILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 124 ~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
.....+-..+..+.-|+-+-=+.--+-....++.+++.+++- +..+---.-||| +.-....+-..|+|-+-+||.||+
T Consensus 164 rHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~g-rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 164 RHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 999999999999873688899999987578299999999839-8874742256768816799999818984786564337
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 89989999999999
Q gi|254780975|r 203 QKGEISYAKRLNDL 216 (224)
Q Consensus 203 ~~d~~~~~~~l~~l 216 (224)
+.||...++.+.+-
T Consensus 243 S~~P~~~A~AIV~A 256 (296)
T COG0214 243 SSNPEKRAKAIVEA 256 (296)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 89989999999999
No 242
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=94.45 E-value=0.094 Score=31.52 Aligned_cols=172 Identities=17% Similarity=0.259 Sum_probs=109.1
Q ss_pred HHHHHHCCCCEEEEEEECC-EECCCCCC----CHHHHHHHHH-CCCCEEEEEE----------EEEE-CCHHHHHHCCCC
Q ss_conf 9999965998999973426-34584341----7899998641-2564168567----------8851-203367640477
Q gi|254780975|r 23 ISNITKAGAKQIHFDVMDG-CFVPNISF----GADVIRSLRS-YSDSVFDCHL----------MISS-IDSHINIIADAG 85 (224)
Q Consensus 23 i~~l~~~~~d~iHiDImDg-~fvpn~~~----~~~~i~~i~~-~t~~~~dvHL----------Mv~~-P~~~i~~~~~~g 85 (224)
++.+++ +.|.|+.+--| +|--++-| +++.++.+|+ ..+.++.--| ..++ -++|+++..+.|
T Consensus 34 ~e~lD~--~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nG 111 (472)
T COG5016 34 AEALDK--VGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENG 111 (472)
T ss_pred HHHHHH--CCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 999875--180578741770099999986479899999999867885889987037513656784589999999998648
Q ss_pred CCEEEEECCCCCC---HHHHHHHHHHCCCEEEEEEECCC-CHHHHHHHHHHCCEEEEEEEE-C---CCCCCCCCCHHHHH
Q ss_conf 6079997066421---58999867764982599852333-447899886201402899830-6---77653322013577
Q gi|254780975|r 86 CDIITFHPESSPH---IRRSLRTIHAMGKKTGVAINPET-PVAILEDVIDEIDMILIMTVN-P---GFGGQQLIESTIPK 157 (224)
Q Consensus 86 ~d~i~~H~E~~~~---~~~~i~~i~~~g~k~Giai~p~T-~~~~i~~~l~~~D~vliM~V~-P---G~~Gq~f~~~~l~k 157 (224)
.|.+-+- .+.+| +...++.+++.|..+-.++.-.| |+..++.|++...-++=|+++ . .-+|-.--..+++-
T Consensus 112 idvfRiF-DAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayel 190 (472)
T COG5016 112 IDVFRIF-DALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYEL 190 (472)
T ss_pred CCEEEEC-HHCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 7579721-110464679999999996186368998742688652899999999999727987884000026986889999
Q ss_pred HHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 8998654313-865269815899889999996799899974
Q gi|254780975|r 158 IRQAKALIGK-RSISLEVDGGVTSRNIKSLVQAGADLLVVG 197 (224)
Q Consensus 158 I~~l~~~~~~-~~~~I~vDGGvn~~~i~~l~~~Gad~~V~G 197 (224)
|+.+|+.++= -.+....--|+..-+.-...++|||.+=..
T Consensus 191 Vk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTA 231 (472)
T COG5016 191 VKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGIDTA 231 (472)
T ss_pred HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf 99999745970698504555617999999998176422210
No 243
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=94.37 E-value=0.46 Score=27.12 Aligned_cols=137 Identities=15% Similarity=0.282 Sum_probs=88.7
Q ss_pred HHHHHCCCCCCEEEE-ECCC-------CCCHHHHHHHHHHCCCEEEEEEECC-------CCH----HHHHHHHHHCCE--
Q ss_conf 367640477607999-7066-------4215899986776498259985233-------344----789988620140--
Q gi|254780975|r 77 HINIIADAGCDIITF-HPES-------SPHIRRSLRTIHAMGKKTGVAINPE-------TPV----AILEDVIDEIDM-- 135 (224)
Q Consensus 77 ~i~~~~~~g~d~i~~-H~E~-------~~~~~~~i~~i~~~g~k~Giai~p~-------T~~----~~i~~~l~~~D~-- 135 (224)
-.+.+.++|++++.+ |.|- .+.+...++.++++|..+-+.++-. ... ..+...+..++-
T Consensus 80 S~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~~ 159 (251)
T COG0149 80 SAEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEA 159 (251)
T ss_pred CHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 89999986998899785011243563469999999999988996899858977777555668899999999987448543
Q ss_pred EEEEEEEC----CCCCCCCCCHHHHH-HHHHHHHHHC-----CCCEEEEECCCCHHHHHHHH-HCCCCEEEECHHHHCCC
Q ss_conf 28998306----77653322013577-8998654313-----86526981589988999999-67998999742663789
Q gi|254780975|r 136 ILIMTVNP----GFGGQQLIESTIPK-IRQAKALIGK-----RSISLEVDGGVTSRNIKSLV-QAGADLLVVGSSFFNQK 204 (224)
Q Consensus 136 vliM~V~P----G~~Gq~f~~~~l~k-I~~l~~~~~~-----~~~~I~vDGGvn~~~i~~l~-~~Gad~~V~Gsaif~~~ 204 (224)
=.+...+| | .|-+-.+.-.+. .+.+|+...+ .++.|.--||||.+|+.++. ..++|-+-+||+-.+.+
T Consensus 160 ~~vIAYEPvWAIG-TG~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~ 238 (251)
T COG0149 160 NIVIAYEPVWAIG-TGKSASPADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKAD 238 (251)
T ss_pred CEEEEECCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEECCEEECCH
T ss_conf 7399987888845-898889888999999999999974487787579971776855799996589998689721330525
Q ss_pred CHHHHHHHHH
Q ss_conf 9899999999
Q gi|254780975|r 205 GEISYAKRLN 214 (224)
Q Consensus 205 d~~~~~~~l~ 214 (224)
|+...++.+.
T Consensus 239 ~f~~ii~~~~ 248 (251)
T COG0149 239 DFLAILEALA 248 (251)
T ss_pred HHHHHHHHHH
T ss_conf 5999999986
No 244
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=94.32 E-value=0.47 Score=27.05 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=92.8
Q ss_pred HHHCCCCEEEEEEECCEECCCCCCCH-H-HHHHHHHCCCCEEEEEEEEEECCHHH---HHHCCCCCCEEEEECCC-----
Q ss_conf 99659989999734263458434178-9-99986412564168567885120336---76404776079997066-----
Q gi|254780975|r 26 ITKAGAKQIHFDVMDGCFVPNISFGA-D-VIRSLRSYSDSVFDCHLMISSIDSHI---NIIADAGCDIITFHPES----- 95 (224)
Q Consensus 26 l~~~~~d~iHiDImDg~fvpn~~~~~-~-~i~~i~~~t~~~~dvHLMv~~P~~~i---~~~~~~g~d~i~~H~E~----- 95 (224)
+.+.|+|...--.+..+ .+.+.. . .......-...++-|.|.-.+|+.+. +...+.|+|.|-+-.-+
T Consensus 29 ~~~~Ga~l~~TEmv~a~---~~~~~~~~~~~~~~~~~~~~~~~vQl~G~dp~~~a~Aa~~~~~~g~~~IDiN~GCP~~kV 105 (321)
T PRK10415 29 CYEMGAGLTVSEMMSSN---PQVWESDKSRLRMVHVDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKV 105 (321)
T ss_pred HHHHCCCEEEECCEEEC---HHHHCCHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
T ss_conf 99988399998758712---777338488986304678898059972699999999999887649998943189998997
Q ss_pred ---------CCCH---HHHHHHHHHC-CC----EEEEEEECCCC-HHHHHHHHHH--CCEEEEEEEECCCCCCCCCC-HH
Q ss_conf ---------4215---8999867764-98----25998523334-4789988620--14028998306776533220-13
Q gi|254780975|r 96 ---------SPHI---RRSLRTIHAM-GK----KTGVAINPETP-VAILEDVIDE--IDMILIMTVNPGFGGQQLIE-ST 154 (224)
Q Consensus 96 ---------~~~~---~~~i~~i~~~-g~----k~Giai~p~T~-~~~i~~~l~~--~D~vliM~V~PG~~Gq~f~~-~~ 154 (224)
..++ .++++.+++. +. |.-+.+.++.. ...+.+.++. ++.|.+. +....|.+.- .-
T Consensus 106 ~k~g~GsaLl~~p~~~~~iv~a~~~a~~iPVTvKiRlG~~~~~~~~~~~~~~~e~aG~~~itvH---gRT~~q~y~g~ad 182 (321)
T PRK10415 106 NRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIH---GRTRACLFNGEAE 182 (321)
T ss_pred CCCCCEEEHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE---HHHHHHHHCCCCC
T ss_conf 0798365063398999999999973448746999846888522439999999985698899997---2213443169987
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHH-CCCCEEEECHHHHCCCCH
Q ss_conf 577899865431386526981589-9889999996-799899974266378998
Q gi|254780975|r 155 IPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQ-AGADLLVVGSSFFNQKGE 206 (224)
Q Consensus 155 l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~-~Gad~~V~Gsaif~~~d~ 206 (224)
.+.|+++++ ..++++..-|+| +.+.+..+.+ .|+|-+-.|.+.+++|-.
T Consensus 183 w~~i~~vk~---~~~iPvi~NGDI~~~~da~~~l~~tg~dgvMigRgal~nPwi 233 (321)
T PRK10415 183 YDSIRAVKQ---KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI 233 (321)
T ss_pred HHHHHHHHH---CCCCCEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHCCCHH
T ss_conf 799999985---479978965891999999999986299999975665369877
No 245
>PRK07094 biotin synthase; Provisional
Probab=94.29 E-value=0.48 Score=27.01 Aligned_cols=180 Identities=19% Similarity=0.252 Sum_probs=110.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf 588999999999996599899997342634584341--789999864125641685678851203367640477607999
Q gi|254780975|r 14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITF 91 (224)
Q Consensus 14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~ 91 (224)
.+.-++.+..+...+.|+..+.+ .=|. -|..+. -.++++.||+.+++.+.+-+= .-+..-...|.++|+|+...
T Consensus 70 Ls~eeI~~~A~~a~~~G~~~~~l--qsG~-~~~~~~e~~~~ii~~Ik~~~~l~i~lSlG-~l~~e~~~~Lk~AG~dry~~ 145 (323)
T PRK07094 70 LSPEEILECAKKAYELGYGTIVL--QSGE-DPYYTDEKIADIIKEIKKELDVAITLSLG-ERSYEEYKAWKEAGADRYLL 145 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE--ECCC-CCCCCHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHCCCCEEEC
T ss_conf 99999999999999869988999--6489-98866999999999986059945997578-79999999999859774412
Q ss_pred ECCCCC--------------CHHHHHHHHHHCCCEE--EEEEE-CCCCHHHHHHHH---H--HCCEEEEEEEE--CC--C
Q ss_conf 706642--------------1589998677649825--99852-333447899886---2--01402899830--67--7
Q gi|254780975|r 92 HPESSP--------------HIRRSLRTIHAMGKKT--GVAIN-PETPVAILEDVI---D--EIDMILIMTVN--PG--F 145 (224)
Q Consensus 92 H~E~~~--------------~~~~~i~~i~~~g~k~--Giai~-p~T~~~~i~~~l---~--~~D~vliM~V~--PG--~ 145 (224)
-.|+.+ +-.++++.+++.|.++ |.-+. |+...+.+...+ . ++|.|-+.--. || +
T Consensus 146 nlETs~~~~y~~i~p~~t~~~Rl~~l~~~k~~G~~v~sG~iiGlpGET~edr~~~l~~LreL~~~~v~i~~fiP~~gTPl 225 (323)
T PRK07094 146 RHETADRELYEKLHPGMSFENRIQCLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPL 225 (323)
T ss_pred CCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCC
T ss_conf 45656989867758999989999999999983981043027798999999999999999837998867725517999998
Q ss_pred CCCCC--CCHHHHHHHHHHHHHHCCCCEE-EEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 65332--2013577899865431386526-9815899889999996799899974
Q gi|254780975|r 146 GGQQL--IESTIPKIRQAKALIGKRSISL-EVDGGVTSRNIKSLVQAGADLLVVG 197 (224)
Q Consensus 146 ~Gq~f--~~~~l~kI~~l~~~~~~~~~~I-~vDGGvn~~~i~~l~~~Gad~~V~G 197 (224)
.+++- ...++.-|.-+|=+.|+.++.- ..=|.++.+--.....+|||++-.-
T Consensus 226 ~~~~~~~~~~~lr~iAl~Rli~P~a~Ipattal~~l~~~g~~~~l~aGANvvmp~ 280 (323)
T PRK07094 226 ADEKGGSLELTLKVLALARLLLPDANIPATTALGTLNPDGREKGLKAGANVVMPN 280 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHCCCCEECCC
T ss_conf 8999979999999999999978766574446532249889999987688664788
No 246
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=94.18 E-value=0.34 Score=27.98 Aligned_cols=191 Identities=18% Similarity=0.278 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECC-CCCC----CHHHHHHHHH-CCCCEEEEEEE-------EEECC----HHHH
Q ss_conf 99999999999659989999734263458-4341----7899998641-25641685678-------85120----3367
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVP-NISF----GADVIRSLRS-YSDSVFDCHLM-------ISSID----SHIN 79 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvp-n~~~----~~~~i~~i~~-~t~~~~dvHLM-------v~~P~----~~i~ 79 (224)
.+...-...+++.|++.+ .+.=|-..+ .+-| ..+.++.+|+ .++.++...+= ...|. .+++
T Consensus 26 ~d~l~IA~~ld~~Gv~si--E~~GgAtfd~~~r~l~Edpwerlr~i~~~~~nt~lq~LlRg~n~vGy~~~pddvv~~~v~ 103 (463)
T PRK12331 26 EEMLPILEKLDNAGYHSL--EMWGGATFDACLRFLNEDPWERLRAIRKAVKNTKLQMLLRGQNLLGYRNYADDVVESFVQ 103 (463)
T ss_pred HHHHHHHHHHHHCCCCEE--ECCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999999986398489--847771199999985889899999999867884568987003324311378089999999
Q ss_pred HHCCCCCCEEEEECCC--CCCHHHHHHHHHHCCCEEEEEEECCC-CHHHHHHHHHHCCEEEEE-----EEECCCCCCCCC
Q ss_conf 6404776079997066--42158999867764982599852333-447899886201402899-----830677653322
Q gi|254780975|r 80 IIADAGCDIITFHPES--SPHIRRSLRTIHAMGKKTGVAINPET-PVAILEDVIDEIDMILIM-----TVNPGFGGQQLI 151 (224)
Q Consensus 80 ~~~~~g~d~i~~H~E~--~~~~~~~i~~i~~~g~k~Giai~p~T-~~~~i~~~l~~~D~vliM-----~V~PG~~Gq~f~ 151 (224)
...++|.|++-+.--. ..++...++..++.|..+-.++.-.+ |...++.|++....+.=| ++. --.|---=
T Consensus 104 ~a~~~Gidv~rifd~lndi~nl~~ai~~~k~~G~~~~~~i~yt~sp~~t~~yyv~~a~~l~~~Gad~I~ik-D~aGll~P 182 (463)
T PRK12331 104 KSIENGIDIIRIFDALNDVRNLQTAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEIGADSICIK-DMAGILTP 182 (463)
T ss_pred HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCH
T ss_conf 99985999788740566467789999999970786999999725886769999999999996499889986-78677688
Q ss_pred CHHHHHHHHHHHHHHCCCCEEE----EECCCCHHHHHHHHHCCCCEEEEC-HHH---HCCCCHHHHHHHH
Q ss_conf 0135778998654313865269----815899889999996799899974-266---3789989999999
Q gi|254780975|r 152 ESTIPKIRQAKALIGKRSISLE----VDGGVTSRNIKSLVQAGADLLVVG-SSF---FNQKGEISYAKRL 213 (224)
Q Consensus 152 ~~~l~kI~~l~~~~~~~~~~I~----vDGGvn~~~i~~l~~~Gad~~V~G-sai---f~~~d~~~~~~~l 213 (224)
..+.+.|+.+|+.. ++.|+ =|-|...-|.-...++|||++=.. |++ -.++...+....+
T Consensus 183 ~~~~eLV~aLk~~~---~lpI~~HtH~t~Gla~an~laAieAGaDivD~a~~~~s~gtsqP~~~s~v~~l 249 (463)
T PRK12331 183 YVAYELVKCIKENV---TVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVIAL 249 (463)
T ss_pred HHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999999999744---98569983688757999999999849999962353546797898799999998
No 247
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=93.95 E-value=0.13 Score=30.54 Aligned_cols=136 Identities=13% Similarity=0.227 Sum_probs=74.1
Q ss_pred EEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH-HCCC--EEEEEEECC-------CCHHHHHHHHH--
Q ss_conf 16856788512033676404776079997066421589998677-6498--259985233-------34478998862--
Q gi|254780975|r 64 VFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIH-AMGK--KTGVAINPE-------TPVAILEDVID-- 131 (224)
Q Consensus 64 ~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~-~~g~--k~Giai~p~-------T~~~~i~~~l~-- 131 (224)
.+.-|+.=.=..+.+...+.. +++ +|.=-...+.+.++... +.+. ++=|-+|.+ .+++.+..+++
T Consensus 72 ~i~wHfIG~LQsNKvk~i~~~-~~~--IhSvDs~kla~~l~~~~~~~~~~~~vliQVN~s~E~~K~G~~~~e~~~~~~~i 148 (224)
T cd06824 72 DIEWHFIGPIQSNKTKLIAEN-FDW--VHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNISGEDSKSGVAPEDAAELAEAI 148 (224)
T ss_pred CCEEEEECCCCHHHHHHHHHH-HHH--HHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 955999775520167999985-218--97645099999999999972998628999853785002698999999999999
Q ss_pred ----HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf ----0140289983067765332201357789986543138652-69815899889999996799899974266378
Q gi|254780975|r 132 ----EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS-LEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQ 203 (224)
Q Consensus 132 ----~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~-I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~ 203 (224)
.+...-+||+-|-.....-....+.+++++++-+...... -+.-=|.+ ...+..++.|++.+=+||+||++
T Consensus 149 ~~~~~l~i~GLMti~p~~~d~~~~r~~F~~l~~l~~~l~~~~~~~~~LSMGMS-~Dye~AI~~GsT~VRIGsaIFGa 224 (224)
T cd06824 149 SQLPNLRLRGLMAIPAPTDDEAAQRAAFKRLRQLFDQLKKQYPDLDTLSMGMS-GDLEAAIAAGSTMVRIGTAIFGA 224 (224)
T ss_pred HHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCH-HHHHHHHHCCCCEEEECCHHHCC
T ss_conf 95699842667765799988578999999999999999851799895777054-54999998799979818364196
No 248
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=93.80 E-value=0.59 Score=26.41 Aligned_cols=179 Identities=15% Similarity=0.173 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCC--CC----CHHHHHHHHHC-CCCEEEEEEEEEE-CCHHHHHHCCCC
Q ss_conf 5889999999999965998999973426345843--41----78999986412-5641685678851-203367640477
Q gi|254780975|r 14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNI--SF----GADVIRSLRSY-SDSVFDCHLMISS-IDSHINIIADAG 85 (224)
Q Consensus 14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~--~~----~~~~i~~i~~~-t~~~~dvHLMv~~-P~~~i~~~~~~g 85 (224)
.+.....+-++.|+++|++++-+---||-....+ +| ..+.++.+++. .+..+-+.+.-.. -...++...++|
T Consensus 22 fs~e~k~~ia~~Ld~aGVd~IEVghg~gl~~ss~~~g~~~~~d~e~i~~~~~~~~~aki~~l~~pg~~~~~dl~~A~~~g 101 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAADVVKQAKLATLLLPGIGTIEDLKMAYDAG 101 (337)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999999999999809899994478887775334678779839999999997432837899635655588899999579
Q ss_pred CCEEEE--ECCCCCCHHHHHHHHHHCCCEEEEEE--ECCCCHHHHHHHHHH-----CCEEEEEEEECCCCCCCCCCHHHH
Q ss_conf 607999--70664215899986776498259985--233344789988620-----140289983067765332201357
Q gi|254780975|r 86 CDIITF--HPESSPHIRRSLRTIHAMGKKTGVAI--NPETPVAILEDVIDE-----IDMILIMTVNPGFGGQQLIESTIP 156 (224)
Q Consensus 86 ~d~i~~--H~E~~~~~~~~i~~i~~~g~k~Giai--~p~T~~~~i~~~l~~-----~D~vliM~V~PG~~Gq~f~~~~l~ 156 (224)
++.+-+ |+.-.+...+.++++|+.|.++-..+ ..-++.+.+...... +|.|-+. --.|--.-..+.+
T Consensus 102 v~~vria~~~tead~~~~~i~~ar~~G~~v~~~lm~s~~~~~e~l~~~a~~~~~~Gad~I~l~----DT~G~~~P~~v~~ 177 (337)
T PRK08195 102 VRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMASPEKLAEQAKLMESYGAQCVYVV----DSAGALLPDDVRA 177 (337)
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCHHHHHHHHHHHHHCCCCEEEEC----CCCCCCCHHHHHH
T ss_conf 897999863148877999999999779939997511024899999999999986599999978----9876679999999
Q ss_pred HHHHHHHHHH-CCC--CEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 7899865431-386--526981589988999999679989997
Q gi|254780975|r 157 KIRQAKALIG-KRS--ISLEVDGGVTSRNIKSLVQAGADLLVV 196 (224)
Q Consensus 157 kI~~l~~~~~-~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~ 196 (224)
.++.+++..+ +.. +...=|=|.-.-|.-...++||+.+=+
T Consensus 178 ~v~~l~~~l~~~i~igfH~HNnlGlAvANslaAveaGA~~ID~ 220 (337)
T PRK08195 178 RVRALRAALKPDTQVGFHGHHNLGLGVANSLAAVEAGADRIDA 220 (337)
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 9999998649985499985388675999999999809999985
No 249
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=93.79 E-value=0.59 Score=26.40 Aligned_cols=124 Identities=15% Similarity=0.216 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCC-HHHHHHHHHCCCCEEEEEEEEEEC---CHHHHHHCCCCCCEEEEE
Q ss_conf 9999999999965998999973426345843417-899998641256416856788512---033676404776079997
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG-ADVIRSLRSYSDSVFDCHLMISSI---DSHINIIADAGCDIITFH 92 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~-~~~i~~i~~~t~~~~dvHLMv~~P---~~~i~~~~~~g~d~i~~H 92 (224)
+.+++-++.+++.|+..+. |.-|. |=+-=. +++++.+++ ..+-+.| +.|. ++.++.+..+|...+.+|
T Consensus 59 Ls~ee~~~~~~e~Gap~V~--itGGE--PLLr~dl~eIv~~a~~---~g~~v~l-~TNG~Ll~k~i~~~~~~~~~~~~Vs 130 (318)
T TIGR03470 59 LSVEECLRAVDECGAPVVS--IPGGE--PLLHPEIDEIVRGLVA---RKKFVYL-CTNALLLEKKLDKFEPSPYLTFSVH 130 (318)
T ss_pred CCHHHHHHHHHHCCCCEEE--ECCCC--CCCCCCHHHHHHHHHH---CCCEEEE-ECCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8999999999984997899--51887--4556479999999997---5997999-7755200999999851888369998
Q ss_pred CCCCCC--------------HHHHHHHHHHCCCEEEEEEEC--CCCHHHHHHHHHHCCE--EEEEEEECCCCCC
Q ss_conf 066421--------------589998677649825998523--3344789988620140--2899830677653
Q gi|254780975|r 93 PESSPH--------------IRRSLRTIHAMGKKTGVAINP--ETPVAILEDVIDEIDM--ILIMTVNPGFGGQ 148 (224)
Q Consensus 93 ~E~~~~--------------~~~~i~~i~~~g~k~Giai~p--~T~~~~i~~~l~~~D~--vliM~V~PG~~Gq 148 (224)
.+..+. ..+.|+.++++|.++.+--.. ++.++.+..+++.+.- |.-|++.|||+..
T Consensus 131 LDG~~e~HD~~r~~~G~Fd~av~aIr~ak~~G~~V~iN~Tvf~~~n~~~i~~~~d~~~~lgVdgi~isp~y~Ye 204 (318)
T TIGR03470 131 LDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYE 204 (318)
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 01787886688717977999999999999869946799897068999999999999987699738976653102
No 250
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=93.77 E-value=0.6 Score=26.37 Aligned_cols=171 Identities=18% Similarity=0.187 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECC-EECCCCCCCHHHHHHHHHC-CCCEEEEEEEEEE-C-CHHHHHHCCCCCCEEEE
Q ss_conf 89999999999965998999973426-3458434178999986412-5641685678851-2-03367640477607999
Q gi|254780975|r 16 FSRLGEEISNITKAGAKQIHFDVMDG-CFVPNISFGADVIRSLRSY-SDSVFDCHLMISS-I-DSHINIIADAGCDIITF 91 (224)
Q Consensus 16 ~~~l~~~i~~l~~~~~d~iHiDImDg-~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~~-P-~~~i~~~~~~g~d~i~~ 91 (224)
.-+-.+-++.|.+.|++.|-+ | -|+..-.+ +.++.+++. .+.++..+..... | .+-++....+|++.+.+
T Consensus 13 ~e~K~~i~~~L~~~Gv~~IEv----g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~g~~~i~i 86 (237)
T pfam00682 13 VEEKLAIARALDEAGVDEIEV----GFPFMSPTDF--ESVRAIAEVLKKAKIQALLRPVEHDIDAAVEAAKGAGADRVHV 86 (237)
T ss_pred HHHHHHHHHHHHHCCCCEEEE----ECCCCCCCHH--HHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999999999849898999----5775897359--9999776502587510100034104999999999679999999
Q ss_pred ECCCCC----------------CHHHHHHHHHHCCCEEEEE--EECCCCHHHHHHHHHHC-----CEEEEEEEECCCCCC
Q ss_conf 706642----------------1589998677649825998--52333447899886201-----402899830677653
Q gi|254780975|r 92 HPESSP----------------HIRRSLRTIHAMGKKTGVA--INPETPVAILEDVIDEI-----DMILIMTVNPGFGGQ 148 (224)
Q Consensus 92 H~E~~~----------------~~~~~i~~i~~~g~k~Gia--i~p~T~~~~i~~~l~~~-----D~vliM~V~PG~~Gq 148 (224)
-.-.++ ...+.+.++++.|.++-+. -...++.+.+..++..+ |.| .++ --.|.
T Consensus 87 ~~~~se~~~~~n~~~s~~~~l~~~~~~i~~a~~~g~~v~f~~~~~~~~~~~~~~~~~~~~~~~G~~~i-~l~---DT~G~ 162 (237)
T pfam00682 87 FIATSDLHRKYKLNKDREEVADRAVAAVEAARSAGIDVELGCEDAGRTDLAFLIEVVEVAQEAGATRI-NIA---DTVGV 162 (237)
T ss_pred EEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE-EEC---CCCCC
T ss_conf 61057878998857899999999999999999869905884051232478899999999986198579-736---86455
Q ss_pred CCCCHHHHHHHHHHHHHHCCC--CEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 322013577899865431386--526981589988999999679989997
Q gi|254780975|r 149 QLIESTIPKIRQAKALIGKRS--ISLEVDGGVTSRNIKSLVQAGADLLVV 196 (224)
Q Consensus 149 ~f~~~~l~kI~~l~~~~~~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~ 196 (224)
..-..+.+.++.+++.+++.. +...=|=|.-..|.-...++|++.+=+
T Consensus 163 ~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~aN~l~A~~aG~~~id~ 212 (237)
T pfam00682 163 LTPNEAADLISALKDRVPPVIIEVHCHNDLGMAVANSLAAVEAGADRVDG 212 (237)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 79899999999999708987158874488672999999999968999987
No 251
>TIGR00734 hisAF_rel hisA/hisF family protein; InterPro: IPR004650 This family of proteins has so far been found in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. Proteins are homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. However, the function of proteins in this group is unknown..
Probab=93.75 E-value=0.6 Score=26.35 Aligned_cols=179 Identities=11% Similarity=0.233 Sum_probs=121.2
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCC-CCEEEEEEEEEECCH--HHHHHCCCCC
Q ss_conf 0632588999999999996599899997342634584341789999864125-641685678851203--3676404776
Q gi|254780975|r 10 SILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYS-DSVFDCHLMISSIDS--HINIIADAGC 86 (224)
Q Consensus 10 Sil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t-~~~~dvHLMv~~P~~--~i~~~~~~g~ 86 (224)
+-.+.|+.+....+ ++.|..++- |.|=.|.-..+=+++.++.+.... .+.+|+= +..|+. -+....+. +
T Consensus 32 ~~~ss~P~~~ak~~---~e~gar~iY--iADLd~I~G~GdNf~~~~~~~~~~~e~I~D~G--vrS~EdLE~~~f~l~~-~ 103 (230)
T TIGR00734 32 ISKSSDPVDVAKAL---KEIGARSIY--IADLDAIVGLGDNFELVKKVDKVVEELIVDIG--VRSREDLETLKFVLEK-D 103 (230)
T ss_pred EECCCCHHHHHHHH---HHCCCCEEE--EEEHHHHCCCCCHHHHHHHHHHHCCHHEEECC--CCCHHHHHHCCCCCCC-C
T ss_conf 70788878999999---863884686--34100222688548999886322200124135--5684544310367563-5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCC-CEEEEEE----------ECCCCHHHHHHHHH--HCCEEEEEEEE-CCCCCCCCCC
Q ss_conf 079997066421589998677649-8259985----------23334478998862--01402899830-6776533220
Q gi|254780975|r 87 DIITFHPESSPHIRRSLRTIHAMG-KKTGVAI----------NPETPVAILEDVID--EIDMILIMTVN-PGFGGQQLIE 152 (224)
Q Consensus 87 d~i~~H~E~~~~~~~~i~~i~~~g-~k~Giai----------~p~T~~~~i~~~l~--~~D~vliM~V~-PG~~Gq~f~~ 152 (224)
+++.+=.||.+..+..-+..|++- -++-+++ +....++.+..+++ ++|.+.++-+. -|.+ +.|+.
T Consensus 104 ~R~vVaTETl~~~ell~e~~rnyPPer~VVSlDfK~~~L~~~~l~~~leevrd~l~~f~~~GlI~LdI~sVGt~-~G~n~ 182 (230)
T TIGR00734 104 DRVVVATETLDSTELLKEILRNYPPERIVVSLDFKEKRLDASSLEESLEEVRDLLNSFDLDGLIVLDISSVGTS-KGVNL 182 (230)
T ss_pred CCEEEEECCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCCCH
T ss_conf 63688624504678999986158986379998400552000130456888875306631013798336330567-78788
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH-HHCCCCEEEECHHHHCC
Q ss_conf 1357789986543138652698158998899999-96799899974266378
Q gi|254780975|r 153 STIPKIRQAKALIGKRSISLEVDGGVTSRNIKSL-VQAGADLLVVGSSFFNQ 203 (224)
Q Consensus 153 ~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l-~~~Gad~~V~Gsaif~~ 203 (224)
+.+++++++.+ + ++.+=|||.-.-..++ .+.|++.+-+|+|+.+.
T Consensus 183 ell~~~l~l~e---~---PV~~GGGi~g~EdlEl~~~mGv~avLvatA~HkG 228 (230)
T TIGR00734 183 ELLKKVLELSE---R---PVILGGGIKGVEDLELLKEMGVSAVLVATAVHKG 228 (230)
T ss_pred HHHHHHHHHHC---C---CEEECCCCCCCCHHHHHHHCCCCEEEEEEEECCC
T ss_conf 89998864424---8---7140687367510788885687657553210047
No 252
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=93.73 E-value=0.61 Score=26.33 Aligned_cols=156 Identities=24% Similarity=0.331 Sum_probs=89.4
Q ss_pred HHHHHHHHCCCCEEEEEEEE--EECC-HHHHHHCCCCCCEEEEECC--CCCCHHHH---HHHHHHCCCEEEEEEECCCCH
Q ss_conf 99998641256416856788--5120-3367640477607999706--64215899---986776498259985233344
Q gi|254780975|r 52 DVIRSLRSYSDSVFDCHLMI--SSID-SHINIIADAGCDIITFHPE--SSPHIRRS---LRTIHAMGKKTGVAINPETPV 123 (224)
Q Consensus 52 ~~i~~i~~~t~~~~dvHLMv--~~P~-~~i~~~~~~g~d~i~~H~E--~~~~~~~~---i~~i~~~g~k~Giai~p~T~~ 123 (224)
+.++.+++.....+++||.+ ..+. .-++.+.++|.|-|-||.- +....++. +...++.|+.+|+-+ |.+|-
T Consensus 98 ~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g~dvG~Ei-Paipg 176 (353)
T COG2108 98 EYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYGMDVGVEI-PAIPG 176 (353)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC-CCCCC
T ss_conf 99999987635320599840665688899999986798759946897211231899999999998285510432-78865
Q ss_pred H-----HHHHHHHH--CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCE---
Q ss_conf 7-----89988620--1402899830677653322013577899865431386526981589988999999679989---
Q gi|254780975|r 124 A-----ILEDVIDE--IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADL--- 193 (224)
Q Consensus 124 ~-----~i~~~l~~--~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~--- 193 (224)
. .+..+++. .|++.+ | .--|.+.-+..+..- -+....+....|+|+ .+++-++.+...+.
T Consensus 177 ~e~~i~e~~~~~~~~~~~FlNi---N----ELE~sE~N~~~l~~~-gy~~~~~~~~av~GS--~E~~Lk~l~~~~~~~~l 246 (353)
T COG2108 177 EEEAILEFAKALDENGLDFLNI---N----ELEFSENNYENLLER-GYKISDDGSSAVAGS--LEAALKVLKWAEENWDL 246 (353)
T ss_pred HHHHHHHHHHHHHHCCCCEEEE---E----EEEECCCHHHHHHHC-CCEECCCCCCCCCCH--HHHHHHHHHHHHCCCCC
T ss_conf 6889999999987606653421---0----044052119999866-761326875543445--89999999987515675
Q ss_pred -EEECHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf -997426637899899999999999978
Q gi|254780975|r 194 -LVVGSSFFNQKGEISYAKRLNDLKKSA 220 (224)
Q Consensus 194 -~V~Gsaif~~~d~~~~~~~l~~l~~~a 220 (224)
+--.|+.|+ |-.+...+++.++++-
T Consensus 247 ~vH~Css~~K--DavQ~r~Rl~r~Akn~ 272 (353)
T COG2108 247 TVHYCSSKFK--DAVQLRNRLKRMAKNV 272 (353)
T ss_pred EEEECCHHHH--HHHHHHHHHHHHHHHC
T ss_conf 4897735666--8999989999998606
No 253
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=93.72 E-value=0.61 Score=26.32 Aligned_cols=118 Identities=14% Similarity=0.191 Sum_probs=66.7
Q ss_pred EEECCHHHHHHCCCCCCEEEEECCCC---------------------CC-HHHHHHHHHHCCCEEEEEEECCCCHHHHHH
Q ss_conf 85120336764047760799970664---------------------21-589998677649825998523334478998
Q gi|254780975|r 71 ISSIDSHINIIADAGCDIITFHPESS---------------------PH-IRRSLRTIHAMGKKTGVAINPETPVAILED 128 (224)
Q Consensus 71 v~~P~~~i~~~~~~g~d~i~~H~E~~---------------------~~-~~~~i~~i~~~g~k~Giai~p~T~~~~i~~ 128 (224)
--||+.+++.+.++|+.++++-.++- .| +.+..+.+|++|+++|+-.++ .+...|
T Consensus 80 ~Fda~~Wa~lak~AGaKY~V~TaKHHDGF~lwdS~~s~~n~~~~gpkrDiv~el~~A~rk~Glk~G~YyS~---~DW~~p 156 (384)
T smart00812 80 KFDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---FDWFNP 156 (384)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECH---HHHCCC
T ss_conf 28999999999984995477521304774146788999866567887667999999998769769998137---773787
Q ss_pred HHHHCCEEEEEEEECC--CCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCC--------HHHHHHHHHCCCC---EE
Q ss_conf 8620140289983067--765332201357789986543138652-69815899--------8899999967998---99
Q gi|254780975|r 129 VIDEIDMILIMTVNPG--FGGQQLIESTIPKIRQAKALIGKRSIS-LEVDGGVT--------SRNIKSLVQAGAD---LL 194 (224)
Q Consensus 129 ~l~~~D~vliM~V~PG--~~Gq~f~~~~l~kI~~l~~~~~~~~~~-I~vDGGvn--------~~~i~~l~~~Gad---~~ 194 (224)
.-.....- ..+++ ...+.|.+..+..++ +|+.+++.+ ++-||+.. .+-+..+.+...+ ++
T Consensus 157 ~y~~~~~~---~~~~~~~~~~~~y~~~~~~Ql~---ELi~~YgpdilWfD~~~~~~~~~~~~~~l~~~~~~~~p~~~~~v 230 (384)
T smart00812 157 LYAGPTSS---DEDPDNWPRFQEFVDDWLPQLR---ELVTRYKPDLLWFDGGWEAPDDYWRSKEFLAWLYNLSPVKDTVV 230 (384)
T ss_pred CCCCCCCC---CCCCCCCCCHHHHHHHHHHHHH---HHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 56675654---4443237218999999999999---99973488559970897886121239999999998499987699
Q ss_pred EEC
Q ss_conf 974
Q gi|254780975|r 195 VVG 197 (224)
Q Consensus 195 V~G 197 (224)
|-.
T Consensus 231 vn~ 233 (384)
T smart00812 231 VND 233 (384)
T ss_pred EEC
T ss_conf 978
No 254
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=93.67 E-value=0.62 Score=26.27 Aligned_cols=196 Identities=22% Similarity=0.261 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEE-ECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf 889999999999965998999973-42634584341--789999864125641685678851203367640477607999
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDV-MDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITF 91 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDI-mDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~ 91 (224)
+.-.+.++-+..++.|+- ++-+ .-|.= ....+ =.+.++.+++.+.+++=+-|= .-.....+++.++|+|++.-
T Consensus 85 ~~eeIle~Ak~ak~~Ga~--r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~~le~c~slG-~l~~eq~~~L~~aGvd~ynh 160 (335)
T COG0502 85 EVEEILEAAKKAKAAGAT--RFCMGAAGRG-PGRDMEEVVEAIKAVKEELGLEVCASLG-MLTEEQAEKLADAGVDRYNH 160 (335)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEEEECCC-CCCCHHHHHHHHHHHHHHCCCHHHHCCC-CCCHHHHHHHHHCCHHHEEC
T ss_conf 999999999999974995--0799873167-7744899999999999846928640258-79999999999718113303
Q ss_pred ECCCCCC-------------HHHHHHHHHHCCCEE--EEEEECC-CCHH---HHHHHHH--HCCEEEEEEEEC--CC--C
Q ss_conf 7066421-------------589998677649825--9985233-3447---8998862--014028998306--77--6
Q gi|254780975|r 92 HPESSPH-------------IRRSLRTIHAMGKKT--GVAINPE-TPVA---ILEDVID--EIDMILIMTVNP--GF--G 146 (224)
Q Consensus 92 H~E~~~~-------------~~~~i~~i~~~g~k~--Giai~p~-T~~~---~i~~~l~--~~D~vliM~V~P--G~--~ 146 (224)
-.|+..+ -.+++...|+.|.++ |.-+..+ |.-+ .+..+.+ ..|.|-++.-+| |- .
T Consensus 161 NLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle 240 (335)
T COG0502 161 NLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLE 240 (335)
T ss_pred CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC
T ss_conf 55569788756578988889999999999809850451276189988899999999971899885423210379998666
Q ss_pred CCC-CCC-HHHHHHHHHHHHHHCCCCEEEEECC---CCHHHHHHHHHCCCCEEEECH-HHHC-CCCHHHHHHHHHHH
Q ss_conf 533-220-1357789986543138652698158---998899999967998999742-6637-89989999999999
Q gi|254780975|r 147 GQQ-LIE-STIPKIRQAKALIGKRSISLEVDGG---VTSRNIKSLVQAGADLLVVGS-SFFN-QKGEISYAKRLNDL 216 (224)
Q Consensus 147 Gq~-f~~-~~l~kI~~l~~~~~~~~~~I~vDGG---vn~~~i~~l~~~Gad~~V~Gs-aif~-~~d~~~~~~~l~~l 216 (224)
.++ ..+ ..+.-|.-+|-++|+..+.+ -|| +..+....+.-+||+.+..|- ++-. .++..+-.+.+++|
T Consensus 241 ~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~--s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~l~~l 315 (335)
T COG0502 241 NAKPLDPFEFLKTIAVARIIMPKSMIRL--SAGRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKDL 315 (335)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEC--CCCCCCCCHHHHHHHHHHCCCEEEECCEEEECCCCCCHHHHHHHHHC
T ss_conf 5899998999999999999778645672--58835225888999998456635652447624899803689999973
No 255
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=93.57 E-value=0.15 Score=30.15 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=14.1
Q ss_pred EEECCHHHHHHCC-CCCCEEEEECCCCC
Q ss_conf 8512033676404-77607999706642
Q gi|254780975|r 71 ISSIDSHINIIAD-AGCDIITFHPESSP 97 (224)
Q Consensus 71 v~~P~~~i~~~~~-~g~d~i~~H~E~~~ 97 (224)
+++|-.|.+++.+ .|+|.|++|..++.
T Consensus 74 ~~dp~~wAKk~v~~~gaD~I~l~l~s~d 101 (322)
T PRK04452 74 MNDPAAWAKKCVEKYGADMITLHLISTD 101 (322)
T ss_pred HCCHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 2299999999998718878999941588
No 256
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=93.54 E-value=0.66 Score=26.12 Aligned_cols=123 Identities=15% Similarity=0.254 Sum_probs=75.7
Q ss_pred HHCCCCCCEEEEECCCC----------------------C----CHHHHHHHHHHC-CC-EEEEEEECC--------C-C
Q ss_conf 64047760799970664----------------------2----158999867764-98-259985233--------3-4
Q gi|254780975|r 80 IIADAGCDIITFHPESS----------------------P----HIRRSLRTIHAM-GK-KTGVAINPE--------T-P 122 (224)
Q Consensus 80 ~~~~~g~d~i~~H~E~~----------------------~----~~~~~i~~i~~~-g~-k~Giai~p~--------T-~ 122 (224)
...++|.|-|-+|.-+. + -+.++++.||+. |. .+|+=|+|. . +
T Consensus 160 ra~~AGfDgVEiHaaHGyLl~qFLSp~~N~RtDeYGGS~eNR~Rf~~Eii~aIR~~vg~d~i~vRlSp~~~~~g~~~~~~ 239 (338)
T cd02933 160 NAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDP 239 (338)
T ss_pred HHHHCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCH
T ss_conf 99983999999822440689985385326898978999899989999999999997298708999657667688788877
Q ss_pred HHHHHHHHH-----HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCC-CCEEEE
Q ss_conf 478998862-----01402899830677653322013577899865431386526981589988999999679-989997
Q gi|254780975|r 123 VAILEDVID-----EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAG-ADLLVV 196 (224)
Q Consensus 123 ~~~i~~~l~-----~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~G-ad~~V~ 196 (224)
.+....++. .+|++.+..-........+.+... +.+|+. .+..+.+=||++.+.+.++++.| +|.+..
T Consensus 240 ~~~~~~~~~~l~~~gid~~~v~~~~~~~~~~~~~~~~~---~~ir~~---~~~pvi~~G~i~~~~ae~~l~~G~~D~V~~ 313 (338)
T cd02933 240 EATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFL---DFLRKA---FKGPLIAAGGYDAESAEAALADGKADLVAF 313 (338)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHH---HHHHHH---CCCCEEEECCCCHHHHHHHHHCCCCCHHHH
T ss_conf 99999999999985998899726877777777657799---999998---699799969989999999998799603685
Q ss_pred CHHHHCCCCHHH
Q ss_conf 426637899899
Q gi|254780975|r 197 GSSFFNQKGEIS 208 (224)
Q Consensus 197 Gsaif~~~d~~~ 208 (224)
|..+.-+|+...
T Consensus 314 gR~liaDP~~~~ 325 (338)
T cd02933 314 GRPFIANPDLVE 325 (338)
T ss_pred HHHHHHCCCHHH
T ss_conf 299987913999
No 257
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=93.53 E-value=0.63 Score=26.23 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHCCC---CEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 3577899865431386---52698158998899999967998999742663789
Q gi|254780975|r 154 TIPKIRQAKALIGKRS---ISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 154 ~l~kI~~l~~~~~~~~---~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
.-.-++++|+.+++.+ ++|.+-||++.+.+..+.++ +|.+=+||+|-..+
T Consensus 243 ~~~l~~~vR~~LD~~G~~~vkIv~Sgglde~~I~~l~~~-vD~fGVGt~l~~~~ 295 (343)
T PRK08662 243 FRKIVEEVRWTLDLHGYSHVKIFVSGGLDEEDIRELRDV-VDGFGVGTSISFAP 295 (343)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH-CCEEEECCCCCCCC
T ss_conf 799999999985455799828999489999999999864-86896066557898
No 258
>PRK12857 putative aldolase; Reviewed
Probab=93.52 E-value=0.66 Score=26.11 Aligned_cols=184 Identities=13% Similarity=0.229 Sum_probs=114.9
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCC--HHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf 706325889999999999965998999973426345843417--899998641256416856788512033676404776
Q gi|254780975|r 9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG--ADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC 86 (224)
Q Consensus 9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~--~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~ 86 (224)
|+.=+.|+..++--++..++.+..-| +.+-.+.. +..++. ...++.+.+.+..|+-+||==-.-...+....++|-
T Consensus 21 ~AfNv~n~e~~~avi~AAee~~sPvI-lq~s~~~~-~~~g~~~~~~~~~~~a~~~~VpV~lHLDH~~~~e~i~~ai~~Gf 98 (284)
T PRK12857 21 GAFNCNNMEIVQAIVAAAEAERSPVI-IQASQGAI-KYAGIEYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRNGF 98 (284)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEE-EECCCCHH-HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf 98788989999999999999789989-99171477-65799999999999999769989996798899999999998099
Q ss_pred CEEEEECCCCC---C---HHHHHHHHHHCCCEE----EE--------EEE----CCCCHHHHHHHHHH--CCEEEEEEEE
Q ss_conf 07999706642---1---589998677649825----99--------852----33344789988620--1402899830
Q gi|254780975|r 87 DIITFHPESSP---H---IRRSLRTIHAMGKKT----GV--------AIN----PETPVAILEDVIDE--IDMILIMTVN 142 (224)
Q Consensus 87 d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Gi--------ai~----p~T~~~~i~~~l~~--~D~vliM~V~ 142 (224)
+.|-|-.-..+ + -.++.++++..|+-+ |- ... ..|.++....++.. +|. +.|-
T Consensus 99 ~SVM~DgS~l~~eeNi~~Tk~vv~~ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~---LAva 175 (284)
T PRK12857 99 TSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAFFTDPEEARRFVEETGVDA---LAIA 175 (284)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE---EEHH
T ss_conf 8799728989999999999999999987089158853013676777776630002589999999999879787---7012
Q ss_pred CCC-----CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 677-----6533220135778998654313865269815--89988999999679989997426637
Q gi|254780975|r 143 PGF-----GGQQLIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 143 PG~-----~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
.|. .|.+- =-+++++++++.. ++++-.-| |+..+.++++++.|+.-+-.||.+..
T Consensus 176 iGn~HG~yk~~p~--L~~~~L~~I~~~~---~vPLVLHGgSGi~~e~i~~ai~~Gi~KiNi~T~l~~ 237 (284)
T PRK12857 176 IGTAHGPYKGVPK--LDFDRLAKIRELV---NIPLVLHGSSGVPDEAIRKAISLGVRKVNIDTNIRE 237 (284)
T ss_pred HCCCCCCCCCCCC--CCHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHHCCEEEEECHHHHH
T ss_conf 0566677689885--6999999998616---999897689999999999999809759974879999
No 259
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=93.51 E-value=0.66 Score=26.09 Aligned_cols=187 Identities=16% Similarity=0.236 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEEC-----C---HHHHHHCCC-CC
Q ss_conf 89999999999965998999973426345843417899998641256416856788512-----0---336764047-76
Q gi|254780975|r 16 FSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSI-----D---SHINIIADA-GC 86 (224)
Q Consensus 16 ~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P-----~---~~i~~~~~~-g~ 86 (224)
+-+.+...+.++..|++.+-+.+=--..-. .-+..++..|+. ..+|++-+.. + +..+.-.++ +.
T Consensus 18 y~s~~~~~~ai~aSg~eivTVAlRR~~~~~--~~~~~~l~~i~~-----~~~~iLPNTAGc~tA~EAVr~A~laRE~~~t 90 (246)
T pfam05690 18 YPSPEVLKEAIRASGAEIVTVALRRVNAGQ--PGGENFLDLLDW-----LGITLLPNTAGCRTAEEAVRTARLAREAFGT 90 (246)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEEEEECCCC--CCCCHHHHHHHH-----CCCEECCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999999999968977998986305888--884258886413-----3866777630118899999999999997099
Q ss_pred CEEEEECCC-----CCCHHHHHHHHHHCCCEEEEEEECCCCHH-HHHHHHHHCCEEEEEEE-ECCCCCCCCC-CHHHHHH
Q ss_conf 079997066-----42158999867764982599852333447-89988620140289983-0677653322-0135778
Q gi|254780975|r 87 DIITFHPES-----SPHIRRSLRTIHAMGKKTGVAINPETPVA-ILEDVIDEIDMILIMTV-NPGFGGQQLI-ESTIPKI 158 (224)
Q Consensus 87 d~i~~H~E~-----~~~~~~~i~~i~~~g~k~Giai~p~T~~~-~i~~~l~~~D~vliM~V-~PG~~Gq~f~-~~~l~kI 158 (224)
++|-+-.-. .+|+.++++..+.. ++-|...-|++.-+ .+.+-|.++--.-+|-- -|=-+||... +..+..|
T Consensus 91 ~wIKLEVi~D~~~LlPD~~etl~Aae~L-v~eGF~VlpY~~~D~v~akrLed~Gc~avMPlgsPIGSg~Gl~n~~~l~~i 169 (246)
T pfam05690 91 NWIKLEVIGDSKTLLPDPIETLKAAEIL-VKEGFTVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLRNPENLRII 169 (246)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHH-HHCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf 7489998269887798878999999999-978998988617998999999875984986224401368886899999999
Q ss_pred HHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf 998654313865269815899-8899999967998999742663789989999999999
Q gi|254780975|r 159 RQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 159 ~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l 216 (224)
++ +.++.+.||.||. .......-+.|+|-+-+-|||-.++||...++.++.-
T Consensus 170 ~e------~~~vPvIVDAGiG~pS~Aa~aMElG~DaVLvNTAIA~A~dPv~MA~A~~~A 222 (246)
T pfam05690 170 IE------EADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFKLA 222 (246)
T ss_pred HH------HCCCCEEEECCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99------679988984898967889999974567777306777379989999999999
No 260
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.50 E-value=0.67 Score=26.09 Aligned_cols=124 Identities=16% Similarity=0.252 Sum_probs=76.9
Q ss_pred CCCCCCEEEEECCC-----------C-----------C----CHHHHHHHHHHC-C--CEEEEEEECCC------CHHHH
Q ss_conf 04776079997066-----------4-----------2----158999867764-9--82599852333------44789
Q gi|254780975|r 82 ADAGCDIITFHPES-----------S-----------P----HIRRSLRTIHAM-G--KKTGVAINPET------PVAIL 126 (224)
Q Consensus 82 ~~~g~d~i~~H~E~-----------~-----------~----~~~~~i~~i~~~-g--~k~Giai~p~T------~~~~i 126 (224)
.++|.|-|-+|.-+ + + -+.++++.+|+. | ..+|+-|++.. ++++.
T Consensus 159 ~~AGfDgVEiH~ahGYLl~qFlS~~~N~RtDeYGGS~ENR~Rf~lEii~avr~~vg~d~~v~~Ris~~d~~~~G~~~~d~ 238 (338)
T cd04733 159 QEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDA 238 (338)
T ss_pred HHCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCHHHH
T ss_conf 98399989982365548998629876899685798988998899999999999719988699984535424799998999
Q ss_pred H---HHHHH--CCEEEEEEE---ECCCCCCCCCC------HHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCC-
Q ss_conf 9---88620--140289983---06776533220------13577899865431386526981589-988999999679-
Q gi|254780975|r 127 E---DVIDE--IDMILIMTV---NPGFGGQQLIE------STIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAG- 190 (224)
Q Consensus 127 ~---~~l~~--~D~vliM~V---~PG~~Gq~f~~------~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~G- 190 (224)
. +.++. +|++.+-.. .|.+.++.... .-++-.+++|+ ..++.+.+-||+ +.+++..+++.|
T Consensus 239 ~~~~~~l~~~GvD~i~vs~G~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~---~~~~Pvi~~G~i~~~~~ae~~l~~g~ 315 (338)
T cd04733 239 LEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRK---VTKTPLMVTGGFRTRAAMEQALASGA 315 (338)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHCCC
T ss_conf 999999987699889946885457322477654445675105999999999---84997999899899999999998799
Q ss_pred CCEEEECHHHHCCCCHHH
Q ss_conf 989997426637899899
Q gi|254780975|r 191 ADLLVVGSSFFNQKGEIS 208 (224)
Q Consensus 191 ad~~V~Gsaif~~~d~~~ 208 (224)
+|.+..|..+.-+||...
T Consensus 316 ~DlV~~gR~~iadPdl~~ 333 (338)
T cd04733 316 VDGIGLARPLALEPDLPN 333 (338)
T ss_pred CEEHHHHHHHHHCCCHHH
T ss_conf 510898899997905999
No 261
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=93.48 E-value=0.67 Score=26.06 Aligned_cols=158 Identities=18% Similarity=0.229 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHC--CCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCC---HHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 34178999986412--56416856788512033676404776079997066421---58999867764982599852333
Q gi|254780975|r 47 ISFGADVIRSLRSY--SDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPH---IRRSLRTIHAMGKKTGVAINPET 121 (224)
Q Consensus 47 ~~~~~~~i~~i~~~--t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~---~~~~i~~i~~~g~k~Giai~p~T 121 (224)
++.+.+.+..+|.- .+. =+|..+...+.++|+|-||+|...... ..++....+..+.+.-|=.+|.
T Consensus 5 LsVNid~iAtLRnaRg~~~--------Pd~~~~a~~~~~~Ga~gITvH~R~DrRHI~~~Dv~~l~~~~~~~lNiE~apt- 75 (240)
T PRK05265 5 LGVNIDHIATLRNARGTNY--------PDPVRAALIAEEAGADGITVHLREDRRHIRDRDVRRLRETLKTRLNLEMAAT- 75 (240)
T ss_pred EEECHHHEEHHHHCCCCCC--------CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEECCCC-
T ss_conf 7323322002341489999--------9999999999983998589526886344662569999986486368711881-
Q ss_pred CHHHHHHHHH--HCCEEEEEEEECC----CCCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCHHHHHHHHHCCCCE
Q ss_conf 4478998862--0140289983067----765332201357789986543138652--6981589988999999679989
Q gi|254780975|r 122 PVAILEDVID--EIDMILIMTVNPG----FGGQQLIESTIPKIRQAKALIGKRSIS--LEVDGGVTSRNIKSLVQAGADL 193 (224)
Q Consensus 122 ~~~~i~~~l~--~~D~vliM~V~PG----~~Gq~f~~~~l~kI~~l~~~~~~~~~~--I~vDGGvn~~~i~~l~~~Gad~ 193 (224)
+.+..+.- ..+++.+.-..|+ -+|+.+.. -.++++.+-+.+.+.++. +-+|- +.+.+....+.|+|.
T Consensus 76 --~e~i~ia~~~kP~qvtLVPe~r~e~TTegGld~~~-~~~~L~~~i~~lk~~gIrvSLFiDP--d~~~i~~a~~~Gad~ 150 (240)
T PRK05265 76 --EEMLDIALEIKPHQVTLVPEKREELTTEGGLDVAG-QFDKLKPAIARLKDAGIRVSLFIDP--DPEQIEAAAEVGADR 150 (240)
T ss_pred --HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCEEEEEECC--CHHHHHHHHHHCCCE
T ss_conf --88999999849985998889988626788937765-7899999999998659817997279--878999999849399
Q ss_pred EEECHHH----HCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9974266----378998999999999999786
Q gi|254780975|r 194 LVVGSSF----FNQKGEISYAKRLNDLKKSAL 221 (224)
Q Consensus 194 ~V~Gsai----f~~~d~~~~~~~l~~l~~~a~ 221 (224)
+=.=+.= +..++. .+.+..++++|.
T Consensus 151 VElhTG~Ya~a~~~~~~---~~el~~i~~aa~ 179 (240)
T PRK05265 151 IELHTGPYADAKTEAEQ---AAELERIAEAAA 179 (240)
T ss_pred EEEECHHHHHHCCCCHH---HHHHHHHHHHHH
T ss_conf 99834787863575219---999999999999
No 262
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=93.46 E-value=0.68 Score=26.04 Aligned_cols=177 Identities=16% Similarity=0.184 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCEECCC--CCC----CHHHHHHHHHC-CCCEEEEEEEEEE-CCHHHHHHCCCCC
Q ss_conf 88999999999996599899997342634584--341----78999986412-5641685678851-2033676404776
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPN--ISF----GADVIRSLRSY-SDSVFDCHLMISS-IDSHINIIADAGC 86 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn--~~~----~~~~i~~i~~~-t~~~~dvHLMv~~-P~~~i~~~~~~g~ 86 (224)
+.....+-++.|+++|++++-+---||-.... ..| ..+.++.+++. .+..+-+.++.-. ....++...++|+
T Consensus 22 s~e~k~~ia~~Ld~aGVd~IEvg~g~g~~~ss~~~g~~~~~d~e~i~~~~~~~~~ak~~~l~~pg~~~~~dl~~a~~~gv 101 (333)
T TIGR03217 22 TIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGA 101 (333)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999997198989960688888874335788899499999999874248056996478666999999996699
Q ss_pred CEEEE--ECCCCCCHHHHHHHHHHCCCEEEE--EEECCCCHHHHHHHHHH-----CCEEEEEEEECCCCCCCCCCHHHHH
Q ss_conf 07999--706642158999867764982599--85233344789988620-----1402899830677653322013577
Q gi|254780975|r 87 DIITF--HPESSPHIRRSLRTIHAMGKKTGV--AINPETPVAILEDVIDE-----IDMILIMTVNPGFGGQQLIESTIPK 157 (224)
Q Consensus 87 d~i~~--H~E~~~~~~~~i~~i~~~g~k~Gi--ai~p~T~~~~i~~~l~~-----~D~vliM~V~PG~~Gq~f~~~~l~k 157 (224)
+.+-+ |+...+...+.++++|+.|..+.. .....++.+.+...... +|.|-+ +--.|...-..+.+.
T Consensus 102 ~~vri~~~~te~d~~~~~i~~ak~~G~~v~~~~~~s~~~~~e~l~~~a~~~~~~Gad~I~i----~DT~G~~~P~~v~~~ 177 (333)
T TIGR03217 102 RTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYI----VDSAGAMLPDDVRDR 177 (333)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE----CCCCCCCCHHHHHHH
T ss_conf 9789863166788899999999976980999975056899999999999998569999997----596446899999999
Q ss_pred HHHHHHHHH-CCC--CEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 899865431-386--52698158998899999967998999
Q gi|254780975|r 158 IRQAKALIG-KRS--ISLEVDGGVTSRNIKSLVQAGADLLV 195 (224)
Q Consensus 158 I~~l~~~~~-~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V 195 (224)
++.+|+.++ +.. +...=|=|.-.-|.-...++||+.+=
T Consensus 178 v~~l~~~~~~~i~ig~H~HNnlGlAvANslaAi~aGa~~VD 218 (333)
T TIGR03217 178 VRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRID 218 (333)
T ss_pred HHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEE
T ss_conf 99999862997548898617877299999999981999997
No 263
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=93.23 E-value=0.73 Score=25.81 Aligned_cols=90 Identities=21% Similarity=0.221 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHH--------HHHHHHHCCCCEEEEEEEEEE----------------
Q ss_conf 99999999996599899997342634584341789--------999864125641685678851----------------
Q gi|254780975|r 18 RLGEEISNITKAGAKQIHFDVMDGCFVPNISFGAD--------VIRSLRSYSDSVFDCHLMISS---------------- 73 (224)
Q Consensus 18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~--------~i~~i~~~t~~~~dvHLMv~~---------------- 73 (224)
-+.++++.|.++|+++||+|= |.++..++ .++..-+--+..+-+|+.--+
T Consensus 157 a~~~Ei~~L~~aG~~~IQiDe------P~~~~~~de~~~~~v~~l~~a~~gl~~~~~~HiC~G~~~~~~~~~~~~~~~~~ 230 (339)
T PRK09121 157 ILNQEAKELEAAGVDIIQFDE------PAFNVFFDEVNDWGVAALERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEW 230 (339)
T ss_pred HHHHHHHHHHHCCCCEEEECC------HHHHHCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
T ss_conf 999999999987999898465------67651578889999999999855898671899648988888765322357535
Q ss_pred --CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf --203367640477607999706642158999867764982599
Q gi|254780975|r 74 --IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGV 115 (224)
Q Consensus 74 --P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Gi 115 (224)
-+..++.+.+.++|.+.+.+.....+.+.+...+. .++++
T Consensus 231 ~~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~l~~~~~--k~v~l 272 (339)
T PRK09121 231 RQYEEAFPKLQKSNIDIISLECHNSHVPMDLLELIRG--KKVMV 272 (339)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCC--CEEEE
T ss_conf 6589999999866898899963799983568873478--86874
No 264
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit; InterPro: IPR004486 This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.; GO: 0006730 one-carbon compound metabolic process.
Probab=93.13 E-value=0.099 Score=31.36 Aligned_cols=134 Identities=19% Similarity=0.287 Sum_probs=78.5
Q ss_pred CCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCC-CCCCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 98999973426345843417899998641256416856788512033676404-77607999706642158999867764
Q gi|254780975|r 31 AKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIAD-AGCDIITFHPESSPHIRRSLRTIHAM 109 (224)
Q Consensus 31 ~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~-~g~d~i~~H~E~~~~~~~~i~~i~~~ 109 (224)
.--+-+||.|-= - |-.-+.||.+ .-|| .+||-.|.+++++ .|||+||+|.=+|.-.. +..
T Consensus 115 pPvvtfDvFDiP---~----PgLpkpiR~h---f~DV---medP~eWArKcVK~fGAdmvTiHlIsTdPk~------~Dk 175 (401)
T TIGR00381 115 PPVVTFDVFDIP---M----PGLPKPIREH---FEDV---MEDPAEWARKCVKEFGADMVTIHLISTDPKV------KDK 175 (401)
T ss_pred CCEEEEEECCCC---C----CCCCHHHHHH---HHHH---HCCHHHHHHHHHHHHCCCEEEEEEECCCCCC------CCC
T ss_conf 687787513687---5----7876677776---5663---0283358888887627663886443378854------688
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHH----HHHCCCCEEEEECCCCHHHHHH
Q ss_conf 982599852333447899886201402899830677653322013577899865----4313865269815899889999
Q gi|254780975|r 110 GKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKA----LIGKRSISLEVDGGVTSRNIKS 185 (224)
Q Consensus 110 g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~----~~~~~~~~I~vDGGvn~~~i~~ 185 (224)
.|.--...++.+|.-||.=+|.+ |-|...-+|.+|+|-.|..+ ++-..+++ . ..+.+..
T Consensus 176 --------sp~EAaK~~EdvLQAVdvP~viG---GSGnpeKDPlVLEkaAEvAEGeR~lLASAnLd--l----Dy~kia~ 238 (401)
T TIGR00381 176 --------SPKEAAKVLEDVLQAVDVPLVIG---GSGNPEKDPLVLEKAAEVAEGERCLLASANLD--L----DYKKIAN 238 (401)
T ss_pred --------CHHHHHHHHHHHHHHCCCCEEEC---CCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCC--C----CHHHHHH
T ss_conf --------72247889998763406775774---78888667578998843113621645413513--4----5789999
Q ss_pred HHHCCCCEEEECHHHH
Q ss_conf 9967998999742663
Q gi|254780975|r 186 LVQAGADLLVVGSSFF 201 (224)
Q Consensus 186 l~~~Gad~~V~Gsaif 201 (224)
... .-|+.|+.=++-
T Consensus 239 AA~-ky~H~VLsW~~m 253 (401)
T TIGR00381 239 AAL-KYDHVVLSWAIM 253 (401)
T ss_pred HHH-HCCCEEEEHHHC
T ss_conf 985-349807761112
No 265
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.12 E-value=0.76 Score=25.71 Aligned_cols=123 Identities=15% Similarity=0.269 Sum_probs=75.8
Q ss_pred HHCCCCCCEEEEECCCC--------------------------CCHHHHHHHHHHC---CCEEEEEEECCCC------HH
Q ss_conf 64047760799970664--------------------------2158999867764---9825998523334------47
Q gi|254780975|r 80 IIADAGCDIITFHPESS--------------------------PHIRRSLRTIHAM---GKKTGVAINPETP------VA 124 (224)
Q Consensus 80 ~~~~~g~d~i~~H~E~~--------------------------~~~~~~i~~i~~~---g~k~Giai~p~T~------~~ 124 (224)
...++|.|-|-+|.-.. .-+.++++.+|+. ...+|+=++|... ++
T Consensus 149 ~A~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtD~YGGs~eNR~Rf~~eii~air~~vg~df~vgvRls~~d~~~~g~~~~ 228 (327)
T cd02803 149 RAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLE 228 (327)
T ss_pred HHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHCCCCCCCHH
T ss_conf 99984999899835766188872175469877778889899989999999999997398876179977021268999989
Q ss_pred HH---HHHHHH--CCEEEEEEEE---C------CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHC
Q ss_conf 89---988620--1402899830---6------77653322013577899865431386526981589-98899999967
Q gi|254780975|r 125 IL---EDVIDE--IDMILIMTVN---P------GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQA 189 (224)
Q Consensus 125 ~i---~~~l~~--~D~vliM~V~---P------G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~ 189 (224)
.. .+.|.. +|+|.+-.-. + ...++.+. ++-.+.+|+. .++.+.+-|++ +.+.+..+++.
T Consensus 229 e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~~---~~~~~~ik~~---~~~pvi~~G~i~~~~~a~~~l~~ 302 (327)
T cd02803 229 EAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYF---LELAEKIKKA---VKIPVIAVGGIRDPEVAEEILAE 302 (327)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHC
T ss_conf 99999999985599989977784566754467877775223---8999999997---69819998998999999999988
Q ss_pred C-CCEEEECHHHHCCCCHHH
Q ss_conf 9-989997426637899899
Q gi|254780975|r 190 G-ADLLVVGSSFFNQKGEIS 208 (224)
Q Consensus 190 G-ad~~V~Gsaif~~~d~~~ 208 (224)
| +|.+-.|.++..+||...
T Consensus 303 g~~D~V~~gR~~iadPd~~~ 322 (327)
T cd02803 303 GKADLVALGRALLADPDLPN 322 (327)
T ss_pred CCCCHHHHHHHHHHCCCHHH
T ss_conf 99312586699997914999
No 266
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.11 E-value=0.77 Score=25.69 Aligned_cols=145 Identities=15% Similarity=0.201 Sum_probs=89.0
Q ss_pred HHHHHHCCCCEEEEEEEEEE-CC---HHHHHHCCCCCCEEEEECCCCCCH----HHHHHHHHHCCCEEEEEEECCCCHHH
Q ss_conf 99864125641685678851-20---336764047760799970664215----89998677649825998523334478
Q gi|254780975|r 54 IRSLRSYSDSVFDCHLMISS-ID---SHINIIADAGCDIITFHPESSPHI----RRSLRTIHAMGKKTGVAINPETPVAI 125 (224)
Q Consensus 54 i~~i~~~t~~~~dvHLMv~~-P~---~~i~~~~~~g~d~i~~H~E~~~~~----~~~i~~i~~~g~k~Giai~p~T~~~~ 125 (224)
++++.+...-+.-..|.+.. ++ ..++...++|+.-+.++..+-... -+.++++++.=..+ +.+.-=...+.
T Consensus 107 lEei~~~~~~~~wfQLY~~~d~~~~~~li~rA~~aG~~al~lTvD~p~~g~R~~w~~i~~l~~~~~~p-~i~KGi~~~~D 185 (299)
T cd02809 107 LEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGP-LILKGILTPED 185 (299)
T ss_pred HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC-EEEECCCCHHH
T ss_conf 89999744898467764369999999999999985999899970589878879999999999866998-79972788999
Q ss_pred HHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECH-HHHC
Q ss_conf 9988620-140289983067765332201357789986543138652698158998-899999967998999742-6637
Q gi|254780975|r 126 LEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGS-SFFN 202 (224)
Q Consensus 126 i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gs-aif~ 202 (224)
-..-.+. +|.|.+ | |-|----...|.+++-+.++++... ..++|.+||||+. ..+-+....|||.+-+|. .+|.
T Consensus 186 A~~a~~~G~dgI~V-S-NHGGRqlD~~p~~i~~L~~i~~~v~-~~~~v~~DgGvR~G~Dv~KAlaLGA~~V~iGRp~l~~ 262 (299)
T cd02809 186 ALRAVDAGADGIVV-S-NHGGRQLDGAPATIDALPEIVAAVG-GRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYG 262 (299)
T ss_pred HHHHHHCCCCEEEE-C-CCCCCCCCCCCCHHHHHHHHHHHHC-CCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 99999859988997-2-8873336888778999999999854-6728997188475368999997699889877899999
No 267
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=93.07 E-value=0.78 Score=25.66 Aligned_cols=152 Identities=16% Similarity=0.272 Sum_probs=80.0
Q ss_pred CCHHHHHHHH-HCCCCE--EEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHH-HHHCCC----EEEEEEEC-
Q ss_conf 1789999864-125641--68567885120336764047760799970664215899986-776498----25998523-
Q gi|254780975|r 49 FGADVIRSLR-SYSDSV--FDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRT-IHAMGK----KTGVAINP- 119 (224)
Q Consensus 49 ~~~~~i~~i~-~~t~~~--~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~-i~~~g~----k~Giai~p- 119 (224)
||-..+.++. ++..++ +.-|+--.=..+.+..+... ++.-.+|.=....+.+.++. +.+.+. ++-|=+|.
T Consensus 49 fGENrvQE~~~K~~~l~~~i~WHfIG~LQsNKvk~i~~~-~~~~~IhSvDs~kla~~l~~~~~~~~~~~~l~vliQVNi~ 127 (227)
T cd06822 49 FGENYVQELIEKAPDLPIDIKWHFIGHLQSNKVKKLLKV-PNLYMVETVDSEKLADKLNKAWEKLGEREPLKVMVQVNTS 127 (227)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC-CCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 288609999999984532545999645324348999706-7744664157499999999999973688870699997027
Q ss_pred ------CCCHHHHHHHH-------HHCCEEEEEEEEC-CCCCCCCCCHHHHHHHHHHHHHH-CCCCE---EEEECCCCHH
Q ss_conf ------33447899886-------2014028998306-77653322013577899865431-38652---6981589988
Q gi|254780975|r 120 ------ETPVAILEDVI-------DEIDMILIMTVNP-GFGGQQLIESTIPKIRQAKALIG-KRSIS---LEVDGGVTSR 181 (224)
Q Consensus 120 ------~T~~~~i~~~l-------~~~D~vliM~V~P-G~~Gq~f~~~~l~kI~~l~~~~~-~~~~~---I~vDGGvn~~ 181 (224)
+.+++.+..++ +.+...-+||+-| +..-..-....+.+.+++++.+. +.+.. .+.-=|.+ .
T Consensus 128 ~E~~K~G~~~~e~~~~~~~i~~~~~~l~i~GLMti~p~~~~~~~~~~~~F~~l~~l~~~l~~~~~~~~~~~eLSMGMS-~ 206 (227)
T cd06822 128 GEESKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGSFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMGMS-A 206 (227)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHH-H
T ss_conf 864568989999999999999868997688999869899880022139999999999999997499999798868536-5
Q ss_pred HHHHHHHCCCCEEEECHHHHC
Q ss_conf 999999679989997426637
Q gi|254780975|r 182 NIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 182 ~i~~l~~~Gad~~V~Gsaif~ 202 (224)
..+..++.|++.+=+||+||+
T Consensus 207 Dye~AIe~GsT~VRIGs~IFG 227 (227)
T cd06822 207 DFEHAIEMGSTNVRVGSAIFG 227 (227)
T ss_pred HHHHHHHCCCCEEECCCHHCC
T ss_conf 799999879997983713109
No 268
>PRK08227 aldolase; Validated
Probab=93.05 E-value=0.78 Score=25.64 Aligned_cols=142 Identities=9% Similarity=0.052 Sum_probs=81.7
Q ss_pred CCCCEEEEEEEEEEC-----CH-----HHHHHCCCCCCEEEEECCC--------CCCHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 256416856788512-----03-----3676404776079997066--------42158999867764982599852333
Q gi|254780975|r 60 YSDSVFDCHLMISSI-----DS-----HINIIADAGCDIITFHPES--------SPHIRRSLRTIHAMGKKTGVAINPET 121 (224)
Q Consensus 60 ~t~~~~dvHLMv~~P-----~~-----~i~~~~~~g~d~i~~H~E~--------~~~~~~~i~~i~~~g~k~Giai~p~T 121 (224)
..+..+=+|+=..+. .. -+++-+..|||.|++|.-- ..++-++...+...|+-.-...-+..
T Consensus 99 ~~~~~lil~~s~~t~~~~~~~~k~lv~sVeeAvrlGAdAVsv~v~iGs~~E~~~l~~lg~v~~e~~~~GmPlla~~~~g~ 178 (291)
T PRK08227 99 ATNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNVCAVAAQVFIGSEYETQSIKNIIQLVDAGLRYGMPTMAVTAVGK 178 (291)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCEEEECHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 79940799980687666787887555349999867997899986359932899999999999999982998799834687
Q ss_pred CHHHHHHHHHH---------CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC------HHHHHHH
Q ss_conf 44789988620---------14028998306776533220135778998654313865269815899------8899999
Q gi|254780975|r 122 PVAILEDVIDE---------IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT------SRNIKSL 186 (224)
Q Consensus 122 ~~~~i~~~l~~---------~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn------~~~i~~l 186 (224)
+...=..++.. .|.|=+ - +-++.+++|.. .-.+++-+-||=. .+.....
T Consensus 179 ~~~~d~~~va~aaRia~ELGADiVKt-----~-----yt~e~f~~Vv~------a~pvPVliaGG~k~~d~e~L~~v~~a 242 (291)
T PRK08227 179 DMVRDARYFSLATRIAAEMGAQIIKT-----Y-----YVEKGFERITA------GCPVPIVIAGGKKLPERDALEMCYQA 242 (291)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEC-----C-----CCHHHHHHHHH------CCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 77777899999999999978998850-----6-----97345999996------48997899679989869999999999
Q ss_pred HHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9679989997426637899899999999999
Q gi|254780975|r 187 VQAGADLLVVGSSFFNQKGEISYAKRLNDLK 217 (224)
Q Consensus 187 ~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~ 217 (224)
.++|+--++.|.-||..+||....+.|..+-
T Consensus 243 ~~aGa~Gv~~GRNVfQ~~~P~~~~~Al~~iV 273 (291)
T PRK08227 243 IDQGASGVDMGRNIFQSDAPVAMIKAVHAVV 273 (291)
T ss_pred HHCCCCEEEECCHHHCCCCHHHHHHHHHHHH
T ss_conf 9769936872400235899899999999986
No 269
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=93.05 E-value=0.78 Score=25.64 Aligned_cols=113 Identities=18% Similarity=0.272 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHCCCEEEEEEECCCCHH-HHHHHHHHCCEEEEEEE-ECCCCCCCCC-CHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 2158999867764982599852333447-89988620140289983-0677653322-0135778998654313865269
Q gi|254780975|r 97 PHIRRSLRTIHAMGKKTGVAINPETPVA-ILEDVIDEIDMILIMTV-NPGFGGQQLI-ESTIPKIRQAKALIGKRSISLE 173 (224)
Q Consensus 97 ~~~~~~i~~i~~~g~k~Giai~p~T~~~-~i~~~l~~~D~vliM~V-~PG~~Gq~f~-~~~l~kI~~l~~~~~~~~~~I~ 173 (224)
+|+.++++..+.. ++-|...-|+|.-+ .+.+-|.++--.-+|-- -|=-+||... +..+..|+ .+.++.+.
T Consensus 121 PD~~etl~Aae~L-v~eGF~VlpY~~dD~v~akrLe~~Gc~avMPlgsPIGSg~Gl~n~~~l~~i~------e~~~vPvI 193 (267)
T CHL00162 121 PDPIGTLKAAEFL-VRKGFTVLPYINADPVLAKQLEDIGCATVMPLGSPIGSGQGLQNLLNLQIII------ENAKIPVI 193 (267)
T ss_pred CCHHHHHHHHHHH-HHCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHH------HCCCCCEE
T ss_conf 8878999999999-9789999895489989999998659868863455123688758999999999------64899889
Q ss_pred EECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf 815899-8899999967998999742663789989999999999
Q gi|254780975|r 174 VDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 174 vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l 216 (224)
||.||. ...+...-+.|+|-+-+-|||-.++||...++.++.-
T Consensus 194 VDAGiG~pSdAa~aMElG~DaVL~NTAIA~A~dPv~MA~A~k~A 237 (267)
T CHL00162 194 IDAGIGTPSEASQAMELGASGVLLNTAVAKAKNPEQMAKAMKLA 237 (267)
T ss_pred EECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
T ss_conf 96898967888999974677787016767169989999999999
No 270
>PRK08999 hypothetical protein; Provisional
Probab=92.92 E-value=0.81 Score=25.52 Aligned_cols=175 Identities=15% Similarity=0.167 Sum_probs=99.4
Q ss_pred EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCC--HHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCC
Q ss_conf 881706325889999999999965998999973426345843417--899998641256416856788512033676404
Q gi|254780975|r 6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG--ADVIRSLRSYSDSVFDCHLMISSIDSHINIIAD 83 (224)
Q Consensus 6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~--~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~ 83 (224)
.|+|+ ...+...+.+.+++..+.|+.++++=- |+++-. ....+.+.... ....+-|+++++......
T Consensus 134 ~IT~~-~~~~~~~~l~~l~~al~~G~~liQlR~------K~l~~~~~~~~a~~~~~lc-~~~~a~liiN~~~~~a~~--- 202 (312)
T PRK08999 134 LITPA-AEHDLAELLAGLERALAAGIRLIQLRA------PQMPPAAYRDLAREAVGLC-RRAGAQLLLNGDIALAED--- 202 (312)
T ss_pred EECCC-CCCCHHHHHHHHHHHHHCCCEEEEEEC------CCCCHHHHHHHHHHHHHHH-HHCCCEEEEECCHHHHHH---
T ss_conf 83267-754769999999988635784999987------8899799999999999999-972988999798899985---
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH-HHCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 77607999706642158999867764982599852333447899886-20140289983067765332201357789986
Q gi|254780975|r 84 AGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVI-DEIDMILIMTVNPGFGGQQLIESTIPKIRQAK 162 (224)
Q Consensus 84 ~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l-~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~ 162 (224)
.++| .+|..+.. +...-..-...+..+|.+-+. .+.+..-- .-+||+++=-|.|--+-..-.+--.++.++
T Consensus 203 ~~ad--GVHL~~~~-L~~~~~Rpl~~~~~vgaScH~---~~e~~~A~~~g~Dyi~lsPV~~T~shp~~~~lGw~~f~~-- 274 (312)
T PRK08999 203 LPAD--GVHLTSAQ-LAKLAARPLPAGRWVAASCHN---AEELAHAQQLGVDFAVLSPVQPTASHPGAPPLGWDGFAA-- 274 (312)
T ss_pred CCCC--EEECCHHH-HHHHHCCCCCCCCEEEEECCC---HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHH--
T ss_conf 7997--79779899-767632778899889996299---999999987089969981544647899999678999999--
Q ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 54313865269815899889999996799899974266
Q gi|254780975|r 163 ALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSF 200 (224)
Q Consensus 163 ~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai 200 (224)
+....++.+..=||++.++++.+.++||.-+-+=|++
T Consensus 275 -l~~~~~iPv~ALGGi~~~dl~~a~~~Ga~GiA~Ir~~ 311 (312)
T PRK08999 275 -LIAGVPLPVYALGGMGPGDLEEAREHGAQGIAGIRGF 311 (312)
T ss_pred -HHHHCCCCEEEECCCCHHHHHHHHHHCCEEEEEEEEC
T ss_conf -9973899989988889999999998099699776315
No 271
>pfam01645 Glu_synthase Conserved region in glutamate synthase. This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.
Probab=92.76 E-value=0.86 Score=25.38 Aligned_cols=118 Identities=18% Similarity=0.297 Sum_probs=72.7
Q ss_pred CCCCEEEEE--CC--CCCCHHHHHHHHHHC--CCEEEEEEECCCCHHHHHHHHH--HCCEEEEEEEECCCCC--CCCCCH
Q ss_conf 776079997--06--642158999867764--9825998523334478998862--0140289983067765--332201
Q gi|254780975|r 84 AGCDIITFH--PE--SSPHIRRSLRTIHAM--GKKTGVAINPETPVAILEDVID--EIDMILIMTVNPGFGG--QQLIES 153 (224)
Q Consensus 84 ~g~d~i~~H--~E--~~~~~~~~i~~i~~~--g~k~Giai~p~T~~~~i~~~l~--~~D~vliM~V~PG~~G--q~f~~~ 153 (224)
.|.|.++-. .+ +.+++.+++..+|+. |+.+|+=+-.....+.+.-.+. ..|+|.+=+-+=|-+. +.|...
T Consensus 170 ~G~d~iSP~~h~di~s~edL~~~I~~Lr~~~~~~PVgvKl~~~~~~~~ia~~~aka~~D~I~IdG~eGGTGAaP~~~~d~ 249 (367)
T pfam01645 170 PGVGLISPPPHHDIYSIEDLAQLIYDLKEINPKAPISVKLVSGHGVGTIAAGVAKAGADIILIDGHDGGTGASPKTSIKH 249 (367)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHH
T ss_conf 99876786334788999999999999984178994599981477689999987536788899717898677554889974
Q ss_pred ----HHHHHHHHHHHHHC----CCCEEEEECCCC-HHHHHHHHHCCCCEEEECHH-HH
Q ss_conf ----35778998654313----865269815899-88999999679989997426-63
Q gi|254780975|r 154 ----TIPKIRQAKALIGK----RSISLEVDGGVT-SRNIKSLVQAGADLLVVGSS-FF 201 (224)
Q Consensus 154 ----~l~kI~~l~~~~~~----~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsa-if 201 (224)
...-+.+..+.+.+ ..+.+.++||+. ...+.+....|||.+..|++ +|
T Consensus 250 ~GlP~~~~L~~~~~~L~~~glR~~V~liasGgl~t~~Dv~ka~aLGAD~v~~gt~~m~ 307 (367)
T pfam01645 250 AGLPWELALAEVHQTLVENGLRDRVSLIADGGLRTGADVAKAAALGADAVYIGTAALI 307 (367)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 4246999999999999870675764999769978889999999856535423479999
No 272
>pfam00121 TIM Triosephosphate isomerase.
Probab=92.71 E-value=0.87 Score=25.34 Aligned_cols=184 Identities=15% Similarity=0.270 Sum_probs=103.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECC----------HHHHHHCCC
Q ss_conf 8899999999999659989999734263458434178999986412564168567885120----------336764047
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSID----------SHINIIADA 84 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~----------~~i~~~~~~ 84 (224)
+.....+-++.+.+...+.-.+++ ..+|.+++=....+.++ .+++ ++-.+|.. -=.+++.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~v---~i~Pp~~~L~~~~~~~~-~~~i----~igaQn~~~~~~Ga~TGeiSa~mL~d~ 83 (243)
T pfam00121 12 TLAEALELAKALLAAALKNDGVEV---VVAPPFTYLSPVSQALK-GSNI----KVGAQNVSAEDSGAFTGEVSAEMLKDL 83 (243)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEE---EEECCHHHHHHHHHHHC-CCCC----EEEECCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 999999999999863467789569---99799999999999845-8996----798323545678887476539999975
Q ss_pred CCCEEEE-EC-------CCCCCHHHHHHHHHHCCCEEEEEEECC-------CCH----HHHHHHHHHCCEE----EEEEE
Q ss_conf 7607999-70-------664215899986776498259985233-------344----7899886201402----89983
Q gi|254780975|r 85 GCDIITF-HP-------ESSPHIRRSLRTIHAMGKKTGVAINPE-------TPV----AILEDVIDEIDMI----LIMTV 141 (224)
Q Consensus 85 g~d~i~~-H~-------E~~~~~~~~i~~i~~~g~k~Giai~p~-------T~~----~~i~~~l~~~D~v----liM~V 141 (224)
|++++.+ |. |+.+.+..-+..+.+.|..+-+.+.-. ... +.+...++.++.- ++..-
T Consensus 84 g~~yviiGHSERR~~f~Etd~~I~~K~~~al~~~l~pIlCiGEt~~~r~~~~~~~~l~~Ql~~~l~~i~~~~~~~iiIAY 163 (243)
T pfam00121 84 GVSYVIIGHSERRQYFGETDEIVAKKVKAALKLGLTPVLCVGETLEEREAGKTLEVLKRQLKAILAGLDEEALKNLIIAY 163 (243)
T ss_pred CCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCEEEEE
T ss_conf 99989984489898829988999999999998799399994671664435678999999999999678987715639996
Q ss_pred ECCC---CCCCCCCHHHHHH-HHHHHHHH------CCCCEEEEECCCCHHHHHHHHH-CCCCEEEECHHHHCCCCH
Q ss_conf 0677---6533220135778-99865431------3865269815899889999996-799899974266378998
Q gi|254780975|r 142 NPGF---GGQQLIESTIPKI-RQAKALIG------KRSISLEVDGGVTSRNIKSLVQ-AGADLLVVGSSFFNQKGE 206 (224)
Q Consensus 142 ~PG~---~Gq~f~~~~l~kI-~~l~~~~~------~~~~~I~vDGGvn~~~i~~l~~-~Gad~~V~Gsaif~~~d~ 206 (224)
+|=. +|+.-.+.-++++ +.+|+.+. ..+++|---|+||.+|+.++.. .++|-+-+|+|-.+.++.
T Consensus 164 EPvWAIGtG~~as~~~i~~~~~~Ir~~l~~~~~~~~~~i~iLYGGSVn~~N~~~i~~~~~vdG~LVGgASL~~~~F 239 (243)
T pfam00121 164 EPVWAIGTGKVATPEQAQEVHAFIRKYLAELSKEVAEEVRILYGGSVNPDNAKELLAQPDIDGFLVGGASLKAESF 239 (243)
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCEEEECCCCHHHHHHHHCCCCCCEEEECHHHCCHHHH
T ss_conf 7822248999999999999999999999984542316642897176899899999668899879841686797888
No 273
>PRK00208 thiG thiazole synthase; Reviewed
Probab=92.60 E-value=0.9 Score=25.25 Aligned_cols=185 Identities=16% Similarity=0.238 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEEC-----C---HHHHHHCCC-CCCE
Q ss_conf 999999999965998999973426345843417899998641256416856788512-----0---336764047-7607
Q gi|254780975|r 18 RLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSI-----D---SHINIIADA-GCDI 88 (224)
Q Consensus 18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P-----~---~~i~~~~~~-g~d~ 88 (224)
+.+..-+.++..|.+.+-+.+=--..- +- =+..+++.|. +..+|++-+.. + +..+.-.++ +.++
T Consensus 22 s~~~~~~ai~aSg~eivTVAlRR~~~~-~~-~~~~~l~~i~-----~~~~~lLPNTAGc~ta~EAVr~A~laRE~~~tnw 94 (256)
T PRK00208 22 SPEVMQEAIEASGAEIVTVALRRVNLG-DP-GGDNLLDLLD-----PLGVTLLPNTAGCRTAEEAVRTARLAREALGTDW 94 (256)
T ss_pred CHHHHHHHHHHHCCCEEEEEEEEECCC-CC-CCHHHHHHHC-----CCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 999999999996897799998642477-89-8505888743-----1585676664032679999999999999848986
Q ss_pred EEEECCC-----CCCHHHHHHHHHHCCCEEEEEEECCCCHH-HHHHHHHHCCEEEEEEE-ECCCCCCCCC-CHHHHHHHH
Q ss_conf 9997066-----42158999867764982599852333447-89988620140289983-0677653322-013577899
Q gi|254780975|r 89 ITFHPES-----SPHIRRSLRTIHAMGKKTGVAINPETPVA-ILEDVIDEIDMILIMTV-NPGFGGQQLI-ESTIPKIRQ 160 (224)
Q Consensus 89 i~~H~E~-----~~~~~~~i~~i~~~g~k~Giai~p~T~~~-~i~~~l~~~D~vliM~V-~PG~~Gq~f~-~~~l~kI~~ 160 (224)
|-+-.-. .+|+.++++..+.. ++-|...-|++.-+ .+.+-|.++--.-+|-- -|=-+||... +..++.|++
T Consensus 95 IKLEVi~D~~~LlPD~~etl~Aae~L-v~eGF~VlpY~~~D~v~akrLe~~Gc~avMPlgsPIGSg~Gl~n~~~l~~i~e 173 (256)
T PRK00208 95 IKLEVIGDDKTLLPDPIETLKAAEIL-VKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIE 173 (256)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHH-HHCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99998179767798868999999999-98899897867889899999997495345204564347988799999999998
Q ss_pred HHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf 8654313865269815899-8899999967998999742663789989999999999
Q gi|254780975|r 161 AKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 161 l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l 216 (224)
+.++.+.||.||. ...+...-+.|+|-+-+-|||-.++||...++.++.-
T Consensus 174 ------~~~vPvIVDAGiG~pS~Aa~AMElG~DaVL~NTAIA~A~dPv~MA~A~~~A 224 (256)
T PRK00208 174 ------QADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLA 224 (256)
T ss_pred ------HCCCCEEEECCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHH
T ss_conf ------679988985788976678999862554323556877269989999999999
No 274
>KOG3055 consensus
Probab=92.47 E-value=0.25 Score=28.81 Aligned_cols=31 Identities=42% Similarity=0.658 Sum_probs=11.4
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 6981589988999999679989997426637
Q gi|254780975|r 172 LEVDGGVTSRNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 172 I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
+||-||||.+|.....+.||..+++-|.+|+
T Consensus 85 LQvGGGIN~~Nc~~wl~egASkVIVTSwlF~ 115 (263)
T KOG3055 85 LQVGGGINSENCMSWLEEGASKVIVTSWLFN 115 (263)
T ss_pred EEECCCCCHHHHHHHHHHCCCEEEEEEEECC
T ss_conf 3554861768889999825764899997515
No 275
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=92.36 E-value=0.78 Score=25.65 Aligned_cols=105 Identities=14% Similarity=0.245 Sum_probs=57.8
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCEEEE-E--EECCEE-CCCCCCCHHHHHHHHHCCCCEEEEEEEEE-E----CCHHHHHH
Q ss_conf 63258899999999999659989999-7--342634-58434178999986412564168567885-1----20336764
Q gi|254780975|r 11 ILAADFSRLGEEISNITKAGAKQIHF-D--VMDGCF-VPNISFGADVIRSLRSYSDSVFDCHLMIS-S----IDSHINII 81 (224)
Q Consensus 11 il~~d~~~l~~~i~~l~~~~~d~iHi-D--ImDg~f-vpn~~~~~~~i~~i~~~t~~~~dvHLMv~-~----P~~~i~~~ 81 (224)
.-..+...+.++++.+.+.+.+.+.+ + +.|+.+ ..+...-.++++.+++......+.++.+. + .+..++.+
T Consensus 27 ~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~e~l~~l 106 (216)
T smart00729 27 LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEAL 106 (216)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHH
T ss_conf 45759999999999999708976530011002468988899999999999998514356269999706021589999999
Q ss_pred CCCCCCEEEEECCCCC--------------CHHHHHHHHHHCC-CEEEE
Q ss_conf 0477607999706642--------------1589998677649-82599
Q gi|254780975|r 82 ADAGCDIITFHPESSP--------------HIRRSLRTIHAMG-KKTGV 115 (224)
Q Consensus 82 ~~~g~d~i~~H~E~~~--------------~~~~~i~~i~~~g-~k~Gi 115 (224)
.++|.+.+.+=.|+.+ +..+.++.+++.| ..++.
T Consensus 107 ~~~g~~~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~g~~~~~~ 155 (216)
T smart00729 107 KEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVST 155 (216)
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9849986666735507899987179999999999999999858936877
No 276
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=92.33 E-value=0.97 Score=25.04 Aligned_cols=185 Identities=16% Similarity=0.247 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEE-----CCH---HHHHHCCC-CCCE
Q ss_conf 99999999996599899997342634584341789999864125641685678851-----203---36764047-7607
Q gi|254780975|r 18 RLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISS-----IDS---HINIIADA-GCDI 88 (224)
Q Consensus 18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~-----P~~---~i~~~~~~-g~d~ 88 (224)
+.+...+.++..|.+.+-+.+=--..-. .-+..+++.|++ ..++++-+. .+. ..+.-.++ +.++
T Consensus 21 s~~~~~~ai~aSgaeivTVAlRR~~~~~--~~~~~~l~~i~~-----~~~~~LPNTAGc~ta~EAvr~A~laRE~~~t~~ 93 (248)
T cd04728 21 SPAIMKEAIEASGAEIVTVALRRVNIGD--PGGESFLDLLDK-----SGYTLLPNTAGCRTAEEAVRTARLAREALGTDW 93 (248)
T ss_pred CHHHHHHHHHHHCCCEEEEEEEECCCCC--CCCHHHHHHHHH-----CCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 9999999999968976999986305788--885268987523-----386687654011679999999999999848986
Q ss_pred EEEECCC-----CCCHHHHHHHHHHCCCEEEEEEECCCCHH-HHHHHHHHCCEEEEEEE-ECCCCCCCCC-CHHHHHHHH
Q ss_conf 9997066-----42158999867764982599852333447-89988620140289983-0677653322-013577899
Q gi|254780975|r 89 ITFHPES-----SPHIRRSLRTIHAMGKKTGVAINPETPVA-ILEDVIDEIDMILIMTV-NPGFGGQQLI-ESTIPKIRQ 160 (224)
Q Consensus 89 i~~H~E~-----~~~~~~~i~~i~~~g~k~Giai~p~T~~~-~i~~~l~~~D~vliM~V-~PG~~Gq~f~-~~~l~kI~~ 160 (224)
|-+-.-. .+|+.++++..+.. ++-|...-|++.-+ .+.+-|.++--.-+|-- -|=-+||.+. +..+..|+
T Consensus 94 IKLEVi~D~~~LlPD~~eTl~Aae~L-v~~GF~VlpY~~~D~v~akrLe~~Gc~avMPlgsPIGSg~Gl~n~~~l~~i~- 171 (248)
T cd04728 94 IKLEVIGDDKTLLPDPIETLKAAEIL-VKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIII- 171 (248)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHH-HHCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHH-
T ss_conf 99998179767798868999999999-9889989786788999999999749534520456434798879999999999-
Q ss_pred HHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf 8654313865269815899-8899999967998999742663789989999999999
Q gi|254780975|r 161 AKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 161 l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l 216 (224)
+ +.++.+.||.||. .......-+.|+|-+-+-|||-.++||...++.++.-
T Consensus 172 --e---~~~vPvIVDAGiG~pS~Aa~aMElG~daVL~NTAIA~A~dPv~MA~A~~~A 223 (248)
T cd04728 172 --E---RADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLA 223 (248)
T ss_pred --H---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHH
T ss_conf --8---479988984799975678999872655334546877169989999999999
No 277
>pfam04055 Radical_SAM Radical SAM superfamily. Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation.
Probab=92.30 E-value=0.98 Score=25.01 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEE--CC-HHHHHHCCCCCCEE
Q ss_conf 2588999999999996599899997342634584341789999864125641685678851--20-33676404776079
Q gi|254780975|r 13 AADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISS--ID-SHINIIADAGCDII 89 (224)
Q Consensus 13 ~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~--P~-~~i~~~~~~g~d~i 89 (224)
......+.++++...+.+...+ -+.+|.+..+..+.................+++-+.. +. ++++.+.++|.+.+
T Consensus 27 ~~~~~~i~~~~~~~~~~~~~~i--~~~gg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~g~~~i 104 (165)
T pfam04055 27 ELSPEEILEEAKELARLGVEVV--ILTGGEPLLLPDLVELLERLLKLEELEGIRITLETNGTLLDEELLEELKEAGLDRV 104 (165)
T ss_pred CCCHHHHHHHHHHHHHCCCEEE--EEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCC
T ss_conf 2699999999988874598599--99316766652777778887653146764899998514331045689997198522
Q ss_pred EEECCCCCC
Q ss_conf 997066421
Q gi|254780975|r 90 TFHPESSPH 98 (224)
Q Consensus 90 ~~H~E~~~~ 98 (224)
.+..|+..+
T Consensus 105 ~~~ie~~~~ 113 (165)
T pfam04055 105 SISLQSGDD 113 (165)
T ss_pred CCCCCCCCH
T ss_conf 246355999
No 278
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946 This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=92.10 E-value=0.29 Score=28.41 Aligned_cols=170 Identities=21% Similarity=0.288 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEE----EEECCEECCCCCCCHHHHHHHHHCCCCEE-----EEEEEEEECCH--HHHHHCCC
Q ss_conf 899999999999659989999----73426345843417899998641256416-----85678851203--36764047
Q gi|254780975|r 16 FSRLGEEISNITKAGAKQIHF----DVMDGCFVPNISFGADVIRSLRSYSDSVF-----DCHLMISSIDS--HINIIADA 84 (224)
Q Consensus 16 ~~~l~~~i~~l~~~~~d~iHi----DImDg~fvpn~~~~~~~i~~i~~~t~~~~-----dvHLMv~~P~~--~i~~~~~~ 84 (224)
.-++++--+.++++|.|.+=| ||... ++ -+.|+.|++.|++|+ .+.+.++.-+- |.-.+-..
T Consensus 12 ~~~~~~IAk~~~~aGtD~ilvGGs~Gi~e~----~l---d~~v~~ik~~~~~p~iLFPG~~~~Ls~~ADAvlFmSlLNS~ 84 (212)
T TIGR01769 12 SDELKKIAKNAKEAGTDAILVGGSLGISED----KL---DQVVKKIKEITNLPVILFPGSVNLLSRKADAVLFMSLLNSA 84 (212)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCHH----HH---HHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 456999999998528988983663373354----78---89999864015786688278845788886598888865369
Q ss_pred CCCEEEEECCCCCC--------HHH--HHHHHHHCCCEEEEE------EECCCCHHHHHHHHHHCCEEEEEEE--ECCC-
Q ss_conf 76079997066421--------589--998677649825998------5233344789988620140289983--0677-
Q gi|254780975|r 85 GCDIITFHPESSPH--------IRR--SLRTIHAMGKKTGVA------INPETPVAILEDVIDEIDMILIMTV--NPGF- 145 (224)
Q Consensus 85 g~d~i~~H~E~~~~--------~~~--~i~~i~~~g~k~Gia------i~p~T~~~~i~~~l~~~D~vliM~V--~PG~- 145 (224)
..-+|.-|.=...- +|. +-..|-+.|.|+-.+ .=|.+..+.-.-|.=-..|+=+=.| |.|-
T Consensus 85 d~yfivGaqi~aA~~i~~~~PrlE~Ip~AY~iv~~G~ktavG~vG~~~~Ip~~~~~~A~~Y~LAA~Y~G~~~vYLEAGSG 164 (212)
T TIGR01769 85 DTYFIVGAQIKAAVLIKKLQPRLEVIPTAYLIVGPGGKTAVGYVGKARLIPYDKPEIAAAYALAAKYLGFKLVYLEAGSG 164 (212)
T ss_pred CCCEEECCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 97367415157899998727885636522688758874044652001258998666899999999874135121310578
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEEC
Q ss_conf 6533220135778998654313865269815899-889999996799899974
Q gi|254780975|r 146 GGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVG 197 (224)
Q Consensus 146 ~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~G 197 (224)
.-||-.|+++.-+|. ..+ ++.+-|=|||+ .|++.++..+|||++|-|
T Consensus 165 As~Pv~~e~i~~~k~---~~~--~I~LIVGGGIr~~EiA~~~v~aGAd~IVTG 212 (212)
T TIGR01769 165 ASEPVSPETISLVKK---KIS--SIPLIVGGGIRSPEIALKIVLAGADVIVTG 212 (212)
T ss_pred CCCCCCHHHHHHHHH---HCC--CCCEEECCCCCCHHHHHHHHHHCCCEEECC
T ss_conf 666786679999998---548--972775277588899999997089826349
No 279
>PRK04326 methionine synthase; Provisional
Probab=92.00 E-value=1.1 Score=24.78 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHH-------HHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEE
Q ss_conf 999999999965998999973426345843417899-------9986412564168567885120336764047760799
Q gi|254780975|r 18 RLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADV-------IRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIIT 90 (224)
Q Consensus 18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~-------i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~ 90 (224)
-+.++++.+.++|+++||+|= |.++-.++. ++..-+-.+..+-+|+.--|-....+.+.+..+|.+.
T Consensus 162 a~~~Ei~~L~~aG~~~IQiDe------P~l~~~~~~~~~~~ea~n~~~~~~~~~i~~HiC~Gny~~i~~~l~~~~vd~~~ 235 (330)
T PRK04326 162 VINKEIKNLVEAGARYIQIDE------PALHTHPEEVEIAKEALNIIVKGIDVKLGLHVCYGDYSRLAPYILEFPVDQFD 235 (330)
T ss_pred HHHHHHHHHHHCCCCEEEECC------CCHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEE
T ss_conf 999999999987998999658------52003988999999999997278997799995477668899999709988886
Q ss_pred EECCCCCCHHHHHHHHHHC--CCEEEE
Q ss_conf 9706642158999867764--982599
Q gi|254780975|r 91 FHPESSPHIRRSLRTIHAM--GKKTGV 115 (224)
Q Consensus 91 ~H~E~~~~~~~~i~~i~~~--g~k~Gi 115 (224)
+-+-+.. ...++.+++. +.++++
T Consensus 236 lE~~~~~--~~~l~~l~~~~~~k~v~~ 260 (330)
T PRK04326 236 LEFKNYN--FKLLDLLKEYGFEKELGV 260 (330)
T ss_pred HHHHCCC--CHHHHHHHHCCCCCEEEE
T ss_conf 7540798--366688884699984887
No 280
>PRK06267 hypothetical protein; Provisional
Probab=91.76 E-value=1.1 Score=24.62 Aligned_cols=192 Identities=19% Similarity=0.200 Sum_probs=110.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf 70632588999999999996599899997342634584341--7899998641256416856788512033676404776
Q gi|254780975|r 9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC 86 (224)
Q Consensus 9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~ 86 (224)
|+-.-...-.+.+..+...+.|...+=+ --|.- ++- =.++++.|++.++..+.+-+=..+-+. ...+..+|+
T Consensus 58 p~ryR~s~EeIl~~A~~~~~~G~kt~vL--qsGed---yt~eel~~ii~~IK~i~~~avtLSlG~~s~e~-~~~~~~aG~ 131 (324)
T PRK06267 58 PLKARRRPESILAEAIIMKRIGWKLEFI--SGGYG---YTTEEINDIIEMISYIQGSKQYLNVGIIDFEN-LNLNEIEGV 131 (324)
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCEEEE--ECCCC---CCHHHHHHHHHHHHHHCCCCEEEECCCCCHHH-HHHHHHCCH
T ss_conf 6655289999999999999839997998--04877---99899999999998601871697158787999-977766370
Q ss_pred CEEEEECCCCC--------------CHHHHHHHHHHCCCEEEE--EEECCCCHHHHHHHHH-----HCCEEEEEEEEC--
Q ss_conf 07999706642--------------158999867764982599--8523334478998862-----014028998306--
Q gi|254780975|r 87 DIITFHPESSP--------------HIRRSLRTIHAMGKKTGV--AINPETPVAILEDVID-----EIDMILIMTVNP-- 143 (224)
Q Consensus 87 d~i~~H~E~~~--------------~~~~~i~~i~~~g~k~Gi--ai~p~T~~~~i~~~l~-----~~D~vliM~V~P-- 143 (224)
+.- .|+.+ +-.+++..+++.|.++|- -+..+...+.+...+. .+|.|-++.-+|
T Consensus 132 ~~~---lETan~~ly~~i~p~~s~e~Ri~~l~~lk~~G~e~gsG~ivGlGET~ed~~~~~~~lkel~~d~I~I~~f~P~~ 208 (324)
T PRK06267 132 VGA---VETVNPKLHEELCPGKPLDKIKEMLKKAKDLGLKTGITIILGLGETEDDIELLLNLIEELNLDRITFYSLNPQK 208 (324)
T ss_pred HHH---HHCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 142---41479888702799998899999999999839832004687379889999999999997699976325845899
Q ss_pred C--CCCCCCC--CHHHHHHHHHHHHHHCCCCE--EEEECCCCHHHHHHHHHCCCCEEEECHH--HHCCCCHHHHHHHHHH
Q ss_conf 7--7653322--01357789986543138652--6981589988999999679989997426--6378998999999999
Q gi|254780975|r 144 G--FGGQQLI--ESTIPKIRQAKALIGKRSIS--LEVDGGVTSRNIKSLVQAGADLLVVGSS--FFNQKGEISYAKRLND 215 (224)
Q Consensus 144 G--~~Gq~f~--~~~l~kI~~l~~~~~~~~~~--I~vDGGvn~~~i~~l~~~Gad~~V~Gsa--if~~~d~~~~~~~l~~ 215 (224)
| |.+++-. ...+.-|.-+|=++|+-.+. .++| +.+|+..+..||||.+.-=-. .|+.+ +++++.+
T Consensus 209 gTP~en~p~~t~~e~lk~iA~~RL~~Pki~I~~~t~~~---~~~ni~~ll~aGan~itkfp~~~~~~~~----~~~~~e~ 281 (324)
T PRK06267 209 ETIFEGKPSPTTLEYMNWVSSVRLNFPKIKIITGTWVD---KLTNIGPLVMAGSNVITKFPLFSMYGKK----EGKTVEN 281 (324)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCHHHHCCCCCCCCCHHHHHHCHH----HHHHHHH
T ss_conf 99889999989999999999999968871253576535---7110018776477630104108863628----7777999
Q ss_pred H
Q ss_conf 9
Q gi|254780975|r 216 L 216 (224)
Q Consensus 216 l 216 (224)
-
T Consensus 282 ~ 282 (324)
T PRK06267 282 E 282 (324)
T ss_pred H
T ss_conf 9
No 281
>pfam01717 Meth_synt_2 Cobalamin-independent synthase, Catalytic domain. This is a family of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, EC:2.1.1.14 from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length. This domain contains the catalytic residues of the enzyme.
Probab=91.71 E-value=1.1 Score=24.58 Aligned_cols=137 Identities=21% Similarity=0.345 Sum_probs=67.5
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCEECCCCCCC-------HH-----HHHH--HH---HCCCCEEEEEEEEEECCHHHHHH
Q ss_conf 99999999965998999973426345843417-------89-----9998--64---12564168567885120336764
Q gi|254780975|r 19 LGEEISNITKAGAKQIHFDVMDGCFVPNISFG-------AD-----VIRS--LR---SYSDSVFDCHLMISSIDSHINII 81 (224)
Q Consensus 19 l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~-------~~-----~i~~--i~---~~t~~~~dvHLMv~~P~~~i~~~ 81 (224)
+.++++.+.++|+.+||+|= |.++.+ +. .+.. +. .-.+..+-+|+.--|-...++.+
T Consensus 156 ~~~ei~~l~~aG~~~iQiDe------P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~H~C~gny~~i~~~l 229 (324)
T pfam01717 156 LRDEVKDLEAAGILVIQIDE------PALREGLPLKKLDWAAYLDWAVAAFRLDTIVAALDTQVHTHVCYSDFNDILDAI 229 (324)
T ss_pred HHHHHHHHHHCCCCEEEECC------HHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 99999999987998899757------788636644334989999999999998716789998899996688849999999
Q ss_pred CCCCCCEEEEECCCCCC-HHHHHHHHHHCCCEEEEEE-ECCCC----HHHHHH-HHHHCCEE--EEEEEEC--CCCCCCC
Q ss_conf 04776079997066421-5899986776498259985-23334----478998-86201402--8998306--7765332
Q gi|254780975|r 82 ADAGCDIITFHPESSPH-IRRSLRTIHAMGKKTGVAI-NPETP----VAILED-VIDEIDMI--LIMTVNP--GFGGQQL 150 (224)
Q Consensus 82 ~~~g~d~i~~H~E~~~~-~~~~i~~i~~~g~k~Giai-~p~T~----~~~i~~-~l~~~D~v--liM~V~P--G~~Gq~f 150 (224)
.+..+|.+.+-+..... -.+.+..+. .+..+++.+ +..++ .+.+.. +..-.++| -=+++.| ||+.-+
T Consensus 230 ~~~~vd~~~lE~~~~~~~~~~~l~~~~-~~k~v~lGvVd~k~~~lE~~e~v~~rI~~aa~~v~~erL~~spdCGf~~l~- 307 (324)
T pfam01717 230 DALDVDVLTIEFARSDMENLEALEEWG-YGKGVGFGVVDIHSPRVPSVEEIKALIKKALDIVPADRLWVNPDCGLKTRP- 307 (324)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHCC-CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCC-
T ss_conf 748988898111689811458888479-998499888817899989999999999999984898889987888988498-
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 2013577899865
Q gi|254780975|r 151 IESTIPKIRQAKA 163 (224)
Q Consensus 151 ~~~~l~kI~~l~~ 163 (224)
.+....|++-+.+
T Consensus 308 ~e~a~~KL~~~ve 320 (324)
T pfam01717 308 WEEARAALRNMVD 320 (324)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999999
No 282
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=91.56 E-value=1.2 Score=24.48 Aligned_cols=185 Identities=14% Similarity=0.149 Sum_probs=110.9
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf 70632588999999999996599899997342634584341--7899998641256416856788512033676404776
Q gi|254780975|r 9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC 86 (224)
Q Consensus 9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~ 86 (224)
|+.=+.|+..++.-++..++.+..-+ +-+.-|.+ ...++ =...++.+.+..+.|+-+||==-.-...+....++|.
T Consensus 21 ~AfNv~n~e~~~Avi~AAee~~sPvI-lq~s~~~~-~~~g~~~~~~~~~~~a~~~~VPV~lHLDH~~~~e~~~~ai~~Gf 98 (284)
T PRK12737 21 PAFNIHNLETLQVVVETAAELRSPVI-LAGTPGTI-SYAGADYIIAIAEVAARKYNIPLALHLDHHEDLDDIKKKVRAGI 98 (284)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEE-EECCHHHH-HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99888999999999999999789989-99675388-77799999999999999879999998899999999999998199
Q ss_pred CEEEEECCCCC---C---HHHHHHHHHHCCCEE----EEE--------E----ECCCCHHHHHHHHHH--CCEEEEEEEE
Q ss_conf 07999706642---1---589998677649825----998--------5----233344789988620--1402899830
Q gi|254780975|r 87 DIITFHPESSP---H---IRRSLRTIHAMGKKT----GVA--------I----NPETPVAILEDVIDE--IDMILIMTVN 142 (224)
Q Consensus 87 d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Gia--------i----~p~T~~~~i~~~l~~--~D~vliM~V~ 142 (224)
+.|-+-.-+.+ + -.++.++++..|+-+ |-. . ...|.++....++.. +|. +.|-
T Consensus 99 tSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~---LAva 175 (284)
T PRK12737 99 RSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDS---LAVA 175 (284)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCE---EEEC
T ss_conf 8798709999999999999999998645288699963112576777666641113179999999999969898---7000
Q ss_pred CCCCCCCCC--C-HHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 677653322--0-135778998654313865269815--8998899999967998999742663
Q gi|254780975|r 143 PGFGGQQLI--E-STIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFF 201 (224)
Q Consensus 143 PG~~Gq~f~--~-~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif 201 (224)
.|..-..+- | =-+++++++++. .++++-.-| |+..+.++++.+.|+.-+-.|+.+.
T Consensus 176 iGt~HG~yk~~p~L~~d~L~~I~~~---~~iPLVLHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~ 236 (284)
T PRK12737 176 IGTAHGLYKGEPKLDFDRLEEIREK---VSIPLVLHGASGVPDEDVKKAISLGICKVNVATELK 236 (284)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH---CCCCEEEECCCCCCHHHHHHHHHCCEEEEEECHHHH
T ss_conf 3753567599985789999999986---399989668999999999999977958998585899
No 283
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=91.49 E-value=0.88 Score=25.30 Aligned_cols=106 Identities=16% Similarity=0.307 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHH--HHHHCCCCCCEEEEEC
Q ss_conf 89999999999965998999973426345843417899998641256416856788512033--6764047760799970
Q gi|254780975|r 16 FSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSH--INIIADAGCDIITFHP 93 (224)
Q Consensus 16 ~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~--i~~~~~~g~d~i~~H~ 93 (224)
.-.+.+..+++++.|+|.|-+==|=|.-.|.-+. +.|+.||+..++|+++|-=-..=.-- .-.-+++|+|+|-.-.
T Consensus 153 ~~yyv~~a~~l~~~Gad~I~ikD~aGll~P~~~~--eLV~aLk~~~~lpI~~HtH~t~Gla~an~laAieAGaDivD~a~ 230 (463)
T PRK12331 153 IDYFVKLAKEMQEIGADSICIKDMAGILTPYVAY--ELVKCIKENVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAI 230 (463)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH--HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECC
T ss_conf 9999999999996499889986786776889999--99999997449856998368875799999999984999996235
Q ss_pred CC------CCCHHHHHHHHHHCCCEEEEEEECCCCH
Q ss_conf 66------4215899986776498259985233344
Q gi|254780975|r 94 ES------SPHIRRSLRTIHAMGKKTGVAINPETPV 123 (224)
Q Consensus 94 E~------~~~~~~~i~~i~~~g~k~Giai~p~T~~ 123 (224)
.+ .+..+.++..++..|..+||-+..-.++
T Consensus 231 ~~~s~gtsqP~~~s~v~~l~~~~~~~~ld~~~l~~i 266 (463)
T PRK12331 231 SPFAGGTSQPATESMVIALQDLGYDTGLDLEELSEI 266 (463)
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 354679789879999999853899999899999999
No 284
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=91.48 E-value=0.66 Score=26.09 Aligned_cols=65 Identities=18% Similarity=0.308 Sum_probs=51.7
Q ss_pred CCCCCEEEEECCCCCC-HHHHHHHHHHCCCEEEEE----EECCCCHHHHHHHHHHCCEEEEEE--EECCCCCC
Q ss_conf 4776079997066421-589998677649825998----523334478998862014028998--30677653
Q gi|254780975|r 83 DAGCDIITFHPESSPH-IRRSLRTIHAMGKKTGVA----INPETPVAILEDVIDEIDMILIMT--VNPGFGGQ 148 (224)
Q Consensus 83 ~~g~d~i~~H~E~~~~-~~~~i~~i~~~g~k~Gia----i~p~T~~~~i~~~l~~~D~vliM~--V~PG~~Gq 148 (224)
.-.++++.+-+-++.. ..+.+...|+.|.|+|+. +.|- |.+.+..++..+..|.++- ..+|.+|.
T Consensus 259 ~eDAe~viV~~GS~~~~~k~AVd~lR~~G~KVGllr~r~~rPF-P~e~l~~~~k~~k~V~Vldr~~s~g~~g~ 330 (395)
T PRK08367 259 TEDAEIIFVTMGSLAGTLKEWVDKKREEGYKVGAAKITVYRPF-PVEEIRELAKKAKVLAFLEKNITFGLYGA 330 (395)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCC-CHHHHHHHHCCCCEEEEEECCCCCCCCCC
T ss_conf 9998899998174289999999999974985768998885899-99999998657988999868899888981
No 285
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895 The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor. Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport.
Probab=91.39 E-value=0.62 Score=26.30 Aligned_cols=142 Identities=15% Similarity=0.311 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCEEC----------CC--CC--CCHHHHHHHHH---CCCCEEEEEEEEEECCHH
Q ss_conf 889999999999965998999973426345----------84--34--17899998641---256416856788512033
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDVMDGCFV----------PN--IS--FGADVIRSLRS---YSDSVFDCHLMISSIDSH 77 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fv----------pn--~~--~~~~~i~~i~~---~t~~~~dvHLMv~~P~~~ 77 (224)
|+.-+ ..+..| ++.+.++|+ -||=-+ .+ +. .+.+.|++.|+ .++.| .|-=|.+||.-|
T Consensus 147 DLA~v-aHlAtl-earVPF~HF--FDGFRTSHEIQKIE~ldye~~a~lvn~e~v~~fR~r~lnPe~P-~vRGTaQNPDIY 221 (1194)
T TIGR02176 147 DLALV-AHLATL-EARVPFMHF--FDGFRTSHEIQKIEVLDYEDLASLVNDELVKAFRKRSLNPEHP-EVRGTAQNPDIY 221 (1194)
T ss_pred HHHHH-HHHHHH-HHCCCCCCC--CCCCCCCCHHHHHEECCHHHHHHCCCHHHHHHHHHHCCCCCCC-EEECCCCCCCCC
T ss_conf 78999-999998-616874125--7876322011111022758651016988999997416688877-540346587712
Q ss_pred ---------------------HHHHCCC--------------CCCEEEEECCCCC-CHHHHHHHHHHCCCEEEEE-EECC
Q ss_conf ---------------------6764047--------------7607999706642-1589998677649825998-5233
Q gi|254780975|r 78 ---------------------INIIADA--------------GCDIITFHPESSP-HIRRSLRTIHAMGKKTGVA-INPE 120 (224)
Q Consensus 78 ---------------------i~~~~~~--------------g~d~i~~H~E~~~-~~~~~i~~i~~~g~k~Gia-i~p~ 120 (224)
.+++.+. -|+.|+|-.-+.- -+++++++++++|-|+||. .+..
T Consensus 222 FQ~REa~N~YY~a~P~IVq~yM~~~a~lTGR~Y~LfdYYGapdAE~vIi~MGSvaeTieEtvdyL~~kG~KvGllkVrLY 301 (1194)
T TIGR02176 222 FQGREAVNKYYEAVPEIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLRSKGEKVGLLKVRLY 301 (1194)
T ss_pred CCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEEC
T ss_conf 04541437121013358999998876305765675233787020310440585667899999999728932768887512
Q ss_pred CCH--HHHHHHHHH-CCEEEEE--EEECCCCCCCCCCHHHHHHHHH
Q ss_conf 344--789988620-1402899--8306776533220135778998
Q gi|254780975|r 121 TPV--AILEDVIDE-IDMILIM--TVNPGFGGQQLIESTIPKIRQA 161 (224)
Q Consensus 121 T~~--~~i~~~l~~-~D~vliM--~V~PG~~Gq~f~~~~l~kI~~l 161 (224)
=|+ +.+-..||. +-.|-|| |=+||-.|.|+-.++.+=+-+.
T Consensus 302 RPF~~~~F~~~lP~svK~IAVLDRtKEPGa~GEPLYLDV~~A~~e~ 347 (1194)
T TIGR02176 302 RPFSAETFLAALPKSVKRIAVLDRTKEPGAAGEPLYLDVRSAFYEM 347 (1194)
T ss_pred CCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 7985899998424110122212355688655684488899886304
No 286
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=91.33 E-value=1.3 Score=24.33 Aligned_cols=186 Identities=13% Similarity=0.194 Sum_probs=110.1
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf 70632588999999999996599899997342634584341--7899998641256416856788512033676404776
Q gi|254780975|r 9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC 86 (224)
Q Consensus 9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~ 86 (224)
|+.=+.|+..++--++..++.+..-| +-+-.+.. ....+ =...+....+.++.|+-+||==-.....+....++|.
T Consensus 21 ~afNv~n~e~~~avi~AAee~~sPvI-iq~s~~~~-~~~~~~~~~~~~~~~a~~~~VPV~lHLDHg~~~e~i~~ai~~Gf 98 (281)
T PRK06806 21 GAFSVANMEMVMGAIKAAEELSSPLI-LQIAEVRL-NHSPLHMIGPLMVAAAKKATVPVAVHFDHGMTFEKIKEALEIGF 98 (281)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEE-EECCHHHH-CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99777999999999999999699989-99564333-24609999999999997479988997389899999999998299
Q ss_pred CEEEEECCCCC---C---HHHHHHHHHHCCCEEEEEE--------------ECCCCHHHHHHHHHH--CCEEEEEEEECC
Q ss_conf 07999706642---1---5899986776498259985--------------233344789988620--140289983067
Q gi|254780975|r 87 DIITFHPESSP---H---IRRSLRTIHAMGKKTGVAI--------------NPETPVAILEDVIDE--IDMILIMTVNPG 144 (224)
Q Consensus 87 d~i~~H~E~~~---~---~~~~i~~i~~~g~k~Giai--------------~p~T~~~~i~~~l~~--~D~vliM~V~PG 144 (224)
+.|-+-.-..+ + -.++.++++..|+-+--=| ...|+++.-..++.. +|. +.|-.|
T Consensus 99 sSVM~DgS~l~~eeNi~~Tkevve~Ah~~gv~VEaElG~igg~ed~~~~~~~~~T~peea~~Fv~~TgvD~---LAvaiG 175 (281)
T PRK06806 99 TSVMFDGSHYPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTEEAKRFAEETDVDA---LAVAIG 175 (281)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE---EEEECC
T ss_conf 87996099899999999999999999885986999733337746776666756689899999999859989---987437
Q ss_pred CCCCCCC---CHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 7653322---0135778998654313865269815--89988999999679989997426637
Q gi|254780975|r 145 FGGQQLI---ESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 145 ~~Gq~f~---~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
..-..+- .=-+++++++++.. ++++-.-| |+..+.++++++.|+.-+-.+|.+..
T Consensus 176 t~HG~yk~~p~L~~d~L~~I~~~~---~iPLVLHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~~ 235 (281)
T PRK06806 176 NAHGMYNGDPNLRLDRLQEINDNV---HIPLVLHGGSGISPEDFKQCIQHGIRKINVATATFN 235 (281)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHH
T ss_conf 554565899866999999999728---999896499999999999999869838986757899
No 287
>KOG2550 consensus
Probab=91.29 E-value=1.3 Score=24.31 Aligned_cols=121 Identities=14% Similarity=0.239 Sum_probs=61.6
Q ss_pred HHHHHCCCCCCEEEEECCCCC--CHHHHHHHHHHCCCEEEE-EEECCCCHHHHHHHHH-HCCEEEEEEEECC--------
Q ss_conf 367640477607999706642--158999867764982599-8523334478998862-0140289983067--------
Q gi|254780975|r 77 HINIIADAGCDIITFHPESSP--HIRRSLRTIHAMGKKTGV-AINPETPVAILEDVID-EIDMILIMTVNPG-------- 144 (224)
Q Consensus 77 ~i~~~~~~g~d~i~~H~E~~~--~~~~~i~~i~~~g~k~Gi-ai~p~T~~~~i~~~l~-~~D~vliM~V~PG-------- 144 (224)
-++.+.++|+|.|++-.-.-+ .-.+.++|||+..-+.-+ +=|--|. +.-++++. -+|.+-+ +.-+|
T Consensus 255 rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~-~qa~nLI~aGaDgLrV-GMGsGSiCiTqev 332 (503)
T KOG2550 255 RLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTK-EQAANLIAAGADGLRV-GMGSGSICITQKV 332 (503)
T ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCEEEH-HHHHHHHHCCCCEEEE-CCCCCCEEEECEE
T ss_conf 7888663488689996688850457999999986688863431655338-8899998736760575-2556750545301
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf -76533220135778998654313865269815899-889999996799899974266378
Q gi|254780975|r 145 -FGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQ 203 (224)
Q Consensus 145 -~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~ 203 (224)
-.|++--..+++ +.+ +-.+.++.+..||||. ...+.+...+||+.+-.||.+-..
T Consensus 333 ma~GrpQ~TAVy~-va~---~A~q~gvpviADGGi~~~Ghi~KAl~lGAstVMmG~lLAgt 389 (503)
T KOG2550 333 MACGRPQGTAVYK-VAE---FANQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGT 389 (503)
T ss_pred EECCCCCCCCHHH-HHH---HHHHCCCCEECCCCCCCCHHHHHHHHCCCHHHHCCCHHCCC
T ss_conf 2326776200326-999---99764996550687587317788875385063104110102
No 288
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=91.28 E-value=1.3 Score=24.30 Aligned_cols=199 Identities=20% Similarity=0.334 Sum_probs=118.9
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCEEEE-EEECC-EECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCC
Q ss_conf 063258899999999999659989999-73426-3458434178999986412564168567885120336764047760
Q gi|254780975|r 10 SILAADFSRLGEEISNITKAGAKQIHF-DVMDG-CFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCD 87 (224)
Q Consensus 10 Sil~~d~~~l~~~i~~l~~~~~d~iHi-DImDg-~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d 87 (224)
+++.++-..|.+...++++-|..-+-+ -=||. -+||---| .+.++++++.+.+.+-+|.=+.+ +.+++++.+.++|
T Consensus 35 ~Mi~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf-~d~lK~lke~~~l~inaHvGfvd-E~~~eklk~~~vd 112 (275)
T COG1856 35 HMIKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKF-KDELKALKERTGLLINAHVGFVD-ESDLEKLKEELVD 112 (275)
T ss_pred HHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHH-HHHHHHHHHHHCEEEEEEEEECC-HHHHHHHHHHCCC
T ss_conf 752532577888999998457605897578687997428999-99999987753748999851001-7889999871686
Q ss_pred EEEEECCCCC--------------CHHHHHHHHHHCCCEE------EEEEEC-CCCHHHHHHHHH-HCCEEEEEEE--EC
Q ss_conf 7999706642--------------1589998677649825------998523-334478998862-0140289983--06
Q gi|254780975|r 88 IITFHPESSP--------------HIRRSLRTIHAMGKKT------GVAINP-ETPVAILEDVID-EIDMILIMTV--NP 143 (224)
Q Consensus 88 ~i~~H~E~~~--------------~~~~~i~~i~~~g~k~------Giai~p-~T~~~~i~~~l~-~~D~vliM~V--~P 143 (224)
.+..-.-..+ +-.+.+..+++.|.++ ||...- .-..+.++=+.+ ..|.+.+-.. .|
T Consensus 113 vvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtp 192 (275)
T COG1856 113 VVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTP 192 (275)
T ss_pred EEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 89986127748999997688637777889999997094253059997316852333878899860799739999981388
Q ss_pred CCCCCCC----CCHHHHHHHHHHHHHHCCCCEE---EEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf 7765332----2013577899865431386526---98158998899999967998999742663789989999999999
Q gi|254780975|r 144 GFGGQQL----IESTIPKIRQAKALIGKRSISL---EVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 144 G~~Gq~f----~~~~l~kI~~l~~~~~~~~~~I---~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l 216 (224)
|..=|.- .+++..-++.+|+.+++ .+.| .--|-=+.+-=+.++.+|+|.+. |-.....++++++++.
T Consensus 193 Gtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gVd~It-----~P~~~t~e~ak~~r~i 266 (275)
T COG1856 193 GTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGVDRIT-----FPPRGTIEYAKSIRDI 266 (275)
T ss_pred CHHCCCCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHCCCCEEE-----CCCCCCEEHHHHHHHH
T ss_conf 5010577976989999999999985899-746741476753678788888871885044-----5985402233342356
No 289
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=91.22 E-value=1.3 Score=24.26 Aligned_cols=61 Identities=23% Similarity=0.436 Sum_probs=46.9
Q ss_pred CCCCEEEEECCCCCC-HHHHHHHHHHCCCEEEEE----EECCCCHHHHHHHHHHCCEEEEEEEECCCCCC
Q ss_conf 776079997066421-589998677649825998----52333447899886201402899830677653
Q gi|254780975|r 84 AGCDIITFHPESSPH-IRRSLRTIHAMGKKTGVA----INPETPVAILEDVIDEIDMILIMTVNPGFGGQ 148 (224)
Q Consensus 84 ~g~d~i~~H~E~~~~-~~~~i~~i~~~g~k~Gia----i~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq 148 (224)
-.++.+.+-+-++.. ..+.++.+|+.|.|+|+. +.| -|.+.+.+++..++.|++.=-| .||
T Consensus 273 edAe~~iV~~GSt~~~~~eAv~~Lr~~G~kvg~l~~~~l~P-fP~~~i~e~l~~~k~v~VvE~N---~Gq 338 (375)
T PRK09627 273 DDAEILIIAYGSVSLSAKEAINRLREEGIKVGLFRPITLWP-SPAKRLKEIGDKFEKILVIELN---MGQ 338 (375)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECC-CCHHHHHHHHHCCCEEEEEECC---CHH
T ss_conf 99878999956437899999999997499053797524579-9989999999579989998078---159
No 290
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro: IPR005992 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria..
Probab=91.13 E-value=0.071 Score=32.31 Aligned_cols=145 Identities=19% Similarity=0.343 Sum_probs=87.7
Q ss_pred HHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECC--------C-CCCHHHHHHHHHHCCCEE--EEEEECC
Q ss_conf 9999864125641685678851203367640477607999706--------6-421589998677649825--9985233
Q gi|254780975|r 52 DVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPE--------S-SPHIRRSLRTIHAMGKKT--GVAINPE 120 (224)
Q Consensus 52 ~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E--------~-~~~~~~~i~~i~~~g~k~--Giai~p~ 120 (224)
+-|++||. +-...=|-|==++-.+|-+..+++|+|.+.++-- + ...+.+..++|.++-+=+ |=...-.
T Consensus 124 ~ri~~vr~-aG~i~Av~lsPq~~~~~a~~vv~AG~DLLvIqgT~vSaehv~~e~~E~LnLk~fi~eLDvPVv~Ggv~~Y~ 202 (376)
T TIGR01304 124 KRIAEVRD-AGVITAVRLSPQNASKLAPVVVEAGADLLVIQGTVVSAEHVSSESGEPLNLKKFIQELDVPVVAGGVVTYT 202 (376)
T ss_pred HHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEHHHHHHHEEECCCCCCCHHHHHHHHHCCCCEEECCCCCHH
T ss_conf 99999972-68489998665316788899997173004200123201004688887214888975489887883853088
Q ss_pred CCHHHHHHHHHHCCEEEEEEEECCCCC-CCCCC------------HHHHHHHH-HHHHHHCCC---CEEEEECCCC-HHH
Q ss_conf 344789988620140289983067765-33220------------13577899-865431386---5269815899-889
Q gi|254780975|r 121 TPVAILEDVIDEIDMILIMTVNPGFGG-QQLIE------------STIPKIRQ-AKALIGKRS---ISLEVDGGVT-SRN 182 (224)
Q Consensus 121 T~~~~i~~~l~~~D~vliM~V~PG~~G-q~f~~------------~~l~kI~~-l~~~~~~~~---~~I~vDGGvn-~~~ 182 (224)
|.++.-.- =.--|+ -||+| |.-.- ..+--+.- -|.++++.+ +++-.||||. .-.
T Consensus 203 ~ALhLMRt---GAagvl-----VGfgG~ga~~T~~~vLG~~VpmATAiAD~AAARrDYLdEtGGRYVHviADG~i~~sGd 274 (376)
T TIGR01304 203 TALHLMRT---GAAGVL-----VGFGGPGAATTTREVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGD 274 (376)
T ss_pred HHHHHHHH---CCEEEE-----ECCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf 99998630---113788-----6457887342466534210672678999997301133306893377886287055463
Q ss_pred HHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 99999679989997426637899
Q gi|254780975|r 183 IKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 183 i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
+.+++.||||.+|+||=|-.+.+
T Consensus 275 ~~KAIACGADAV~lGSPLArA~e 297 (376)
T TIGR01304 275 LAKAIACGADAVVLGSPLARAAE 297 (376)
T ss_pred HHHHEECCCCHHHHCCCHHHHHH
T ss_conf 00100137760200780256630
No 291
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=90.91 E-value=1.4 Score=24.08 Aligned_cols=106 Identities=19% Similarity=0.295 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHCC--CEEEEEEECCCCHHHHHHHHHH--CCEEEEEEEECCCCC--CCCCCH----HHHHHHHHHHHH
Q ss_conf 421589998677649--8259985233344789988620--140289983067765--332201----357789986543
Q gi|254780975|r 96 SPHIRRSLRTIHAMG--KKTGVAINPETPVAILEDVIDE--IDMILIMTVNPGFGG--QQLIES----TIPKIRQAKALI 165 (224)
Q Consensus 96 ~~~~~~~i~~i~~~g--~k~Giai~p~T~~~~i~~~l~~--~D~vliM~V~PG~~G--q~f~~~----~l~kI~~l~~~~ 165 (224)
.+++.+.++.+|+.+ +.+|+=+......+++...+.. .|+|.+=+-+=|-+. +.|... ...-+..+.+.+
T Consensus 198 ~edl~~~I~~LR~~~~~kpVgvKl~~g~~~~~l~~~~~~~~~DfItIDG~eGGTGAaP~~~~d~~GlP~~~~l~~~~~~L 277 (392)
T cd02808 198 IEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQAL 277 (392)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999999972899807999688898899999999647999996079987541429999749973899999999999
Q ss_pred HC----CCCEEEEECCCC-HHHHHHHHHCCCCEEEECHH-HH
Q ss_conf 13----865269815899-88999999679989997426-63
Q gi|254780975|r 166 GK----RSISLEVDGGVT-SRNIKSLVQAGADLLVVGSS-FF 201 (224)
Q Consensus 166 ~~----~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsa-if 201 (224)
.+ ..+++.++||+. ...+.+....|||.+.+|++ +|
T Consensus 278 ~~~glr~~i~liasGgl~t~~di~kalaLGAD~v~~a~~~m~ 319 (392)
T cd02808 278 VKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALI 319 (392)
T ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHCHHHHH
T ss_conf 976996763799638857478999999867564510569999
No 292
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=90.90 E-value=0.89 Score=25.26 Aligned_cols=63 Identities=19% Similarity=0.297 Sum_probs=49.9
Q ss_pred CCCEEEEECCCCCC-HHHHHHHHHHCCCEEEEE----EECCCCHHHHHHHHHHCCEEEEEE--EECCCCCC
Q ss_conf 76079997066421-589998677649825998----523334478998862014028998--30677653
Q gi|254780975|r 85 GCDIITFHPESSPH-IRRSLRTIHAMGKKTGVA----INPETPVAILEDVIDEIDMILIMT--VNPGFGGQ 148 (224)
Q Consensus 85 g~d~i~~H~E~~~~-~~~~i~~i~~~g~k~Gia----i~p~T~~~~i~~~l~~~D~vliM~--V~PG~~Gq 148 (224)
.+|++.+-+-++.. ..+.++.+|+.|.|+|+. ++|- |.+.+.+++..+..|.++= ..+|..|-
T Consensus 263 dAd~viV~~GS~~~~~~eaVd~lr~~G~kVG~l~vr~~rPF-P~~~l~~~l~~~k~V~Vlern~~~g~~g~ 332 (394)
T PRK08366 263 DADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPF-PKEELYEIAESVKGIAVLDRNFSFGQEGI 332 (394)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCC-CHHHHHHHHCCCCEEEEEECCCCCCCCCC
T ss_conf 87799999375189999999999975986658999884899-99999998757998999657889887881
No 293
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=90.90 E-value=0.76 Score=25.73 Aligned_cols=64 Identities=19% Similarity=0.336 Sum_probs=51.5
Q ss_pred CCCCEEEEECCCCC-CHHHHHHHHHHCCCEEEEE----EECCCCHHHHHHHHHHCCEEEEEE--EECCCCCC
Q ss_conf 77607999706642-1589998677649825998----523334478998862014028998--30677653
Q gi|254780975|r 84 AGCDIITFHPESSP-HIRRSLRTIHAMGKKTGVA----INPETPVAILEDVIDEIDMILIMT--VNPGFGGQ 148 (224)
Q Consensus 84 ~g~d~i~~H~E~~~-~~~~~i~~i~~~g~k~Gia----i~p~T~~~~i~~~l~~~D~vliM~--V~PG~~Gq 148 (224)
-.++++.+-+-++. ...+.++..|+.|.|+|+. +.|- |.+.+.+.+..+..|.||- ..+|..|.
T Consensus 266 eDAe~viV~~GS~~~~~~~AVd~lR~~G~KVGlir~r~~rPF-P~~~l~~al~~~K~V~Vldr~~~~g~~g~ 336 (407)
T PRK09622 266 EDAEVAIFALGTTVESAIVAAKEMRKKGIKAGVATIRVLRPF-PYERLGQALKNLKALAILDRSSPAGAMGA 336 (407)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCC-CHHHHHHHHCCCCEEEEEECCCCCCCCCH
T ss_conf 987799998078689999999999974986758999985899-99999998757998999978899888773
No 294
>PRK01362 putative translaldolase; Provisional
Probab=90.83 E-value=1.4 Score=24.03 Aligned_cols=155 Identities=11% Similarity=0.108 Sum_probs=100.9
Q ss_pred HHHHHHHHHCCCCEEEEEEEEEECCHHHH---HHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHH
Q ss_conf 89999864125641685678851203367---640477607999706642158999867764982599852333447899
Q gi|254780975|r 51 ADVIRSLRSYSDSVFDCHLMISSIDSHIN---IIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILE 127 (224)
Q Consensus 51 ~~~i~~i~~~t~~~~dvHLMv~~P~~~i~---~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~ 127 (224)
.+.++++++..+.|+.+..+..+++..++ .+.+.+. .+.+-.-.+.+-.+.++.+++.|+++-+..-- |.-..+.
T Consensus 40 ~~~~~~i~~~~~~~is~ev~~~~~~~m~~qA~~l~~~~~-nv~VKIP~t~~Gl~ai~~L~~~Gi~vn~Tai~-s~~Qa~~ 117 (214)
T PRK01362 40 KEVIKEICSIVDGPVSAEVIALDAEGMIKEGRELAKIAP-NVVVKIPMTTEGLKAVKALSKEGIKTNVTLCF-SANQALL 117 (214)
T ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCC-CEEEECCCCHHHHHHHHHHHHCCCCEEEEECC-CHHHHHH
T ss_conf 999999987317975799636419999999999998487-76998189666999999999849975766458-8999999
Q ss_pred HHHHHCCEEEEEEE---ECCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCHHHHHHHHHCCCCEEEECHHH--
Q ss_conf 88620140289983---06776533220135778998654313865--269815899889999996799899974266--
Q gi|254780975|r 128 DVIDEIDMILIMTV---NPGFGGQQLIESTIPKIRQAKALIGKRSI--SLEVDGGVTSRNIKSLVQAGADLLVVGSSF-- 200 (224)
Q Consensus 128 ~~l~~~D~vliM~V---~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~--~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai-- 200 (224)
-...-.+||-.-.- +-|. +..+-++++++++.+.++ +|-+-.==|.+++.++..+|+|.+.+.-.+
T Consensus 118 Aa~aga~yispy~gR~~d~G~-------Dg~~~i~~i~~~~~~~~~~tkIL~AS~r~~~~i~~a~~~G~~~iTvp~~i~~ 190 (214)
T PRK01362 118 AAKAGATYVSPFVGRLDDIGT-------DGMELIEDIREIYDNYGFETEIIAASVRHPMHVLEAALIGADIATIPYKVIK 190 (214)
T ss_pred HHHCCCCEEEEECCHHHHCCC-------CHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCEEECCHHHHH
T ss_conf 987599689863121865589-------8289999999999963998137520038899999999869999983999999
Q ss_pred --HCCCCHHHHHHHHH
Q ss_conf --37899899999999
Q gi|254780975|r 201 --FNQKGEISYAKRLN 214 (224)
Q Consensus 201 --f~~~d~~~~~~~l~ 214 (224)
|+.+-..+..+.+.
T Consensus 191 ~l~~~plt~~~~~~F~ 206 (214)
T PRK01362 191 QLFKHPLTDKGLEKFL 206 (214)
T ss_pred HHHCCCCHHHHHHHHH
T ss_conf 9976933799999999
No 295
>pfam01120 Alpha_L_fucos Alpha-L-fucosidase.
Probab=90.74 E-value=1.4 Score=23.97 Aligned_cols=117 Identities=15% Similarity=0.055 Sum_probs=70.3
Q ss_pred EEECCHHHHHHCCCCCCEEEEECCCC---------------------CC-HHHHHHHHHHCCCEEEEEEECCCCHHHHHH
Q ss_conf 85120336764047760799970664---------------------21-589998677649825998523334478998
Q gi|254780975|r 71 ISSIDSHINIIADAGCDIITFHPESS---------------------PH-IRRSLRTIHAMGKKTGVAINPETPVAILED 128 (224)
Q Consensus 71 v~~P~~~i~~~~~~g~d~i~~H~E~~---------------------~~-~~~~i~~i~~~g~k~Giai~p~T~~~~i~~ 128 (224)
--||+.+++.+.++|+.++++-..+. .| +.+....+|++|.++|+-..+- +...+
T Consensus 91 ~fd~~~Wa~~ak~AGakY~vlTaKHHDGF~lwdS~~t~~n~~~~~~krDiv~el~~A~rk~Glk~G~Y~S~~---DW~~~ 167 (344)
T pfam01120 91 KFDADEWAKLAKAAGAKYVVLTTKHHDGFTMWDSKYSDWNSVDTGPKRDIVGELAKACRKNGIKFGFYYSLL---DWHHP 167 (344)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECHH---HHCCC
T ss_conf 079999999999859965886134157752577889998776789997769999999998598679972315---42686
Q ss_pred HHHHCCEEEEEEEECCCCCCC----CCCHHHHHHHHHHHHHHCCCCE-EEEECCCCH--------HHHHHHHHCCCCEEE
Q ss_conf 862014028998306776533----2201357789986543138652-698158998--------899999967998999
Q gi|254780975|r 129 VIDEIDMILIMTVNPGFGGQQ----LIESTIPKIRQAKALIGKRSIS-LEVDGGVTS--------RNIKSLVQAGADLLV 195 (224)
Q Consensus 129 ~l~~~D~vliM~V~PG~~Gq~----f~~~~l~kI~~l~~~~~~~~~~-I~vDGGvn~--------~~i~~l~~~Gad~~V 195 (224)
.-.. +. ..-..+.. +.+..+ .++++|..++.++ ++-|||... +....+.+...+++|
T Consensus 168 ~~~~-~~------~~~~~~~~~~~~~~~~~~---~Ql~EL~~~Y~~d~lWfDg~~~~~~~~~~~~~~~~~~~~~qP~~vi 237 (344)
T pfam01120 168 DYKV-DK------EGQEDKGLWNKYVKEFTF---NQLKELVTNYKPDILWFDGDWDNPSEYWDSAEFYALLYKLQPGVVV 237 (344)
T ss_pred CCCC-CC------CCCCCCCCHHHHHHHHHH---HHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 6676-65------576554106899999999---9999999648977799818988861203799999999852998699
Q ss_pred ECHHH
Q ss_conf 74266
Q gi|254780975|r 196 VGSSF 200 (224)
Q Consensus 196 ~Gsai 200 (224)
.+.-.
T Consensus 238 n~R~~ 242 (344)
T pfam01120 238 NDRWG 242 (344)
T ss_pred ECCCC
T ss_conf 67756
No 296
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=90.69 E-value=1.4 Score=23.95 Aligned_cols=113 Identities=14% Similarity=0.188 Sum_probs=61.2
Q ss_pred HHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf 998677649825998523334478998862-0140289983067765332201357789986543138652698158998
Q gi|254780975|r 102 SLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS 180 (224)
Q Consensus 102 ~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~ 180 (224)
.++|+|+.=..+ +.+.-=...+.-..-.+ -+|-|.| | |=|--...--+.+++-+-++++.. +.++.+||||+.
T Consensus 227 di~wlr~~w~~p-lilKGI~~~eDA~~A~~~G~dgIiV-S-NHGGRQLD~a~~~id~Lp~I~~av---~~~V~~DgGIRr 300 (361)
T cd04736 227 DLRWLRDLWPHK-LLVKGIVTAEDAKRCIELGADGVIL-S-NHGGRQLDDAIAPIEALAEIVAAT---YKPVLIDSGIRR 300 (361)
T ss_pred HHHHHHHHCCCC-EEEECCCCHHHHHHHHHCCCCEEEE-C-CCCCCCCCCCCCHHHHHHHHHHHH---CCEEEEECCCCC
T ss_conf 999999866997-4552148999999998769999997-5-886333577741477799999971---994999489887
Q ss_pred -HHHHHHHHCCCCEEEECH-HHHCC-CCHHHHHHHHHHHHHHH
Q ss_conf -899999967998999742-66378-99899999999999978
Q gi|254780975|r 181 -RNIKSLVQAGADLLVVGS-SFFNQ-KGEISYAKRLNDLKKSA 220 (224)
Q Consensus 181 -~~i~~l~~~Gad~~V~Gs-aif~~-~d~~~~~~~l~~l~~~a 220 (224)
..+-+....||+.+-+|. ++|.- -...+-.++..++.+.+
T Consensus 301 G~DV~KALALGA~aV~iGRp~lygLaa~G~~GV~~~l~iL~~E 343 (361)
T cd04736 301 GSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEE 343 (361)
T ss_pred HHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 8999999977999898778999987711099999999999999
No 297
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=90.63 E-value=1.5 Score=23.91 Aligned_cols=159 Identities=10% Similarity=0.116 Sum_probs=101.0
Q ss_pred HHHHHHHHHCCCCEEEEEEEEEECCHHHHH---HCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHH
Q ss_conf 899998641256416856788512033676---40477607999706642158999867764982599852333447899
Q gi|254780975|r 51 ADVIRSLRSYSDSVFDCHLMISSIDSHINI---IADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILE 127 (224)
Q Consensus 51 ~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~---~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~ 127 (224)
.+.++++++..+.|+.+....++++..+++ +.+.+ +.+.+-.-.+..-.+.++.+++.|+++-+..-- |.-..+.
T Consensus 40 ~~~~~~i~~~~~~~ls~qv~~~~~~~m~~~a~~l~~~~-~ni~vKIP~t~~gl~ai~~L~~~gi~~n~Tav~-s~~Qa~~ 117 (211)
T cd00956 40 EAVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLASLG-GNVVVKIPVTEDGLKAIKKLSEEGIKTNVTAIF-SAAQALL 117 (211)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHH
T ss_conf 99999999854998899997387999999999999738-957999268565999999999859976777506-8999999
Q ss_pred HHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCHHHHHHHHHCCCCEEEECHHH----H
Q ss_conf 8862014028998306776533220135778998654313865--269815899889999996799899974266----3
Q gi|254780975|r 128 DVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSI--SLEVDGGVTSRNIKSLVQAGADLLVVGSSF----F 201 (224)
Q Consensus 128 ~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~--~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai----f 201 (224)
--..-.++|-...-.-.-.|. +..+-++++++++.++++ +|-+-.==|.+++.++..+|+|.+.+.-.+ |
T Consensus 118 Aa~aga~yvspf~GRi~d~G~----d~~~~i~~~~~~~~~~~~~tkiL~AS~R~~~~v~~a~~~G~d~iTip~~vl~~l~ 193 (211)
T cd00956 118 AAKAGATYVSPFVGRIDDLGG----DGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPPDVLEQLL 193 (211)
T ss_pred HHHCCCCEEEEECCCHHHCCC----CHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCEEECCHHHHHHHH
T ss_conf 998799788630340754589----8599999999999982998268852048899999999869999984999999997
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 78998999999999
Q gi|254780975|r 202 NQKGEISYAKRLND 215 (224)
Q Consensus 202 ~~~d~~~~~~~l~~ 215 (224)
+.+...+..+.+.+
T Consensus 194 ~~~~T~~~v~~F~~ 207 (211)
T cd00956 194 KHPLTDKGVEKFLE 207 (211)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 69038999999999
No 298
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=90.02 E-value=1.6 Score=23.59 Aligned_cols=180 Identities=11% Similarity=0.163 Sum_probs=109.7
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCC----HHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf 706325889999999999965998999973426345843417----8999986412564168567885120336764047
Q gi|254780975|r 9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG----ADVIRSLRSYSDSVFDCHLMISSIDSHINIIADA 84 (224)
Q Consensus 9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~----~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ 84 (224)
|+.=+.|+..++--++..++.+..-+ +-+..|.+ . .+| ...++.+.+..+.|+-+||==-+....+....++
T Consensus 21 ~AfNv~n~e~~~Avi~AAee~~sPvI-lq~s~~~~-~--~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~e~i~~ai~~ 96 (286)
T PRK12738 21 PAFNIHNAETIQAILEVCSEMRSPVI-LAGTPGTF-K--HIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHA 96 (286)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEE-EECCHHHH-H--HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHC
T ss_conf 99888999999999999999789989-99375377-6--66999999999999998799999989999999999999977
Q ss_pred CCCEEEEECCCC---CC---HHHHHHHHHHCCCEE----E--------EEEE----CCCCHHHHHHHHHH--CCEEEEEE
Q ss_conf 760799970664---21---589998677649825----9--------9852----33344789988620--14028998
Q gi|254780975|r 85 GCDIITFHPESS---PH---IRRSLRTIHAMGKKT----G--------VAIN----PETPVAILEDVIDE--IDMILIMT 140 (224)
Q Consensus 85 g~d~i~~H~E~~---~~---~~~~i~~i~~~g~k~----G--------iai~----p~T~~~~i~~~l~~--~D~vliM~ 140 (224)
|.+.|-+-.-.. ++ -.++.++++..|+-+ | +... ..|.++....+.+. +|. +.
T Consensus 97 GftSVM~DgS~lp~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~---LA 173 (286)
T PRK12738 97 GVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDS---LA 173 (286)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE---EH
T ss_conf 998798738999999999999999999847399788864134665777666652235799999999999879781---22
Q ss_pred EECCC-----CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 30677-----6533220135778998654313865269815--899889999996799899974266
Q gi|254780975|r 141 VNPGF-----GGQQLIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSF 200 (224)
Q Consensus 141 V~PG~-----~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsai 200 (224)
|-.|. .+.+- =-+++++++++. .++++-.-| |+..+.++++++.|+.-+-.++.+
T Consensus 174 vaiGn~HG~y~~~p~--l~~~~L~~I~~~---~~iPLVLHGgSG~~~e~i~~ai~~Gi~KvNi~T~l 235 (286)
T PRK12738 174 VAIGTAHGLYSKTPK--IDFQRLAEIREV---VDVPLVLHGASDVPDEFVRRTIELGVTKVNVATEL 235 (286)
T ss_pred HHHCCCCCCCCCCCC--CCHHHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHCCEEEEEECHHH
T ss_conf 332354677799994--789999999730---79998976999999999999997690699848589
No 299
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=89.50 E-value=1.8 Score=23.34 Aligned_cols=173 Identities=17% Similarity=0.206 Sum_probs=106.9
Q ss_pred HHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH--CC----------------CCEE-EE-EEEEEECCHHHHH
Q ss_conf 999999965998999973426345843417899998641--25----------------6416-85-6788512033676
Q gi|254780975|r 21 EEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS--YS----------------DSVF-DC-HLMISSIDSHINI 80 (224)
Q Consensus 21 ~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~--~t----------------~~~~-dv-HLMv~~P~~~i~~ 80 (224)
...++.+++|+.. =.|--+ ++-+|.+.+.+.+ +. .+|+ .+ | .|+-|...++.
T Consensus 44 ~l~~~A~~~gi~L---y~MtKQ----~GRNP~l~~~l~~~G~~g~VaVD~kEA~~l~~~gl~vghvGH-LVQiP~~~v~~ 115 (382)
T cd06811 44 LLAETAEKYGIEL---YFMTKQ----FGRNPFLARALLEAGIPGAVAVDFKEARALHEAGLPLGHVGH-LVQIPRHQVPA 115 (382)
T ss_pred HHHHHHHHCCCEE---EEEEEC----CCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCC-CCCCCHHHHHH
T ss_conf 9999999739689---999610----589989999999739985689609999999985998344157-13685768999
Q ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEE---------CC----CCHHHHHHHHH---HCCEEEEEEEE--
Q ss_conf 40477607999706642158999867764982599852---------33----34478998862---01402899830--
Q gi|254780975|r 81 IADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAIN---------PE----TPVAILEDVID---EIDMILIMTVN-- 142 (224)
Q Consensus 81 ~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~---------p~----T~~~~i~~~l~---~~D~vliM~V~-- 142 (224)
....++++||+-.- +...++-...++.|..=-|-+. |+ -+++.+...+. .++.|-+-+|+
T Consensus 116 iv~~~PeviTVfS~--ekA~eis~aA~~~g~~Q~illrV~~~~D~~Y~GQegGf~l~eL~~v~~~i~~l~gi~i~GvT~F 193 (382)
T cd06811 116 VLAMRPEVITVYSL--EKAREISDAAVELGRVQDVLLRVYGDEDTLYPGQEGGFPLEELPAVLAAIKALPGIRIAGLTSF 193 (382)
T ss_pred HHHHCCCEEEEEEH--HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCEEEEEECE
T ss_conf 99749978999209--9999999999981973326999964898463775377548999999999972899679664320
Q ss_pred CCC----CCCCCCC-HHHHHHHHHHHHHHCCCCE---EEEECCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 677----6533220-1357789986543138652---69815899889999996799899974266378
Q gi|254780975|r 143 PGF----GGQQLIE-STIPKIRQAKALIGKRSIS---LEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQ 203 (224)
Q Consensus 143 PG~----~Gq~f~~-~~l~kI~~l~~~~~~~~~~---I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~ 203 (224)
|-+ ..+...| .-+..+.+.|+++.+.++. +-.-+.-+..|++.+.+.|+..-=-|-++-+.
T Consensus 194 Pc~L~d~~~~~~~pT~N~~Tl~~A~~~L~~~G~~~~qvN~PSaTs~~tlp~La~~G~Th~EPGHaLTGT 262 (382)
T cd06811 194 PCFLYDEEQGDIAPTPNLFTLLKAKELLEKRGIEILQLNAPSATSCATLPLLAEYGVTHGEPGHALTGT 262 (382)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 068774777951158529999999999997598627950685114765999998488667887412478
No 300
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit; InterPro: IPR004651 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis. This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex.
Probab=89.41 E-value=1.8 Score=23.29 Aligned_cols=89 Identities=22% Similarity=0.395 Sum_probs=66.9
Q ss_pred ECCCCHHHHHHHHHH-CCEEEEEEEECCCC---CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHH--------
Q ss_conf 233344789988620-14028998306776---533220135778998654313865269815899-88999--------
Q gi|254780975|r 118 NPETPVAILEDVIDE-IDMILIMTVNPGFG---GQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIK-------- 184 (224)
Q Consensus 118 ~p~T~~~~i~~~l~~-~D~vliM~V~PG~~---Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~-------- 184 (224)
+.+-|++.=..|-.. .|=+.++=++.--. +..-.-++++++.+ +--++++|=|||+ .+.+.
T Consensus 40 daGDPVeLA~~Y~~eGADELVFLDITAS~ecPl~R~~m~~Vv~r~Ae------~VfiPlTVGGGI~~~eD~~GtkiPale 113 (312)
T TIGR00735 40 DAGDPVELAQRYDEEGADELVFLDITASSECPLGRETMIDVVERTAE------KVFIPLTVGGGIKSIEDVKGTKIPALE 113 (312)
T ss_pred HCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHH------HCCCCEEECCCCCCHHHCCCCCCCHHH
T ss_conf 21782378999876289589851411366678888011678888752------145222216888843204564442789
Q ss_pred ---HHHHCCCCEEEECHHHHCCCCHHHHHHH
Q ss_conf ---9996799899974266378998999999
Q gi|254780975|r 185 ---SLVQAGADLLVVGSSFFNQKGEISYAKR 212 (224)
Q Consensus 185 ---~l~~~Gad~~V~Gsaif~~~d~~~~~~~ 212 (224)
.++.+|||-+-.+|+=.++|+.+..+..
T Consensus 114 vas~~L~aGADKvSiNTaAv~~P~li~e~a~ 144 (312)
T TIGR00735 114 VASKLLRAGADKVSINTAAVKNPELISEAAD 144 (312)
T ss_pred HHHHHHHCCCCEEEECCHHHHCCHHHHHHHH
T ss_conf 9999985489846328467508447899873
No 301
>KOG1606 consensus
Probab=89.29 E-value=1.6 Score=23.71 Aligned_cols=42 Identities=29% Similarity=0.480 Sum_probs=35.3
Q ss_pred EECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
Q ss_conf 81589-9889999996799899974266378998999999999
Q gi|254780975|r 174 VDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLND 215 (224)
Q Consensus 174 vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~ 215 (224)
.-||| +.-....+-+.|.|-+-+||.||++.||...++.+.+
T Consensus 214 AaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVq 256 (296)
T KOG1606 214 AAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQ 256 (296)
T ss_pred CCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 2567588167999998089848865542368988999999999
No 302
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; InterPro: IPR006276 This group represents cobalamin-independent methionine synthase. A family of uncharacterised archaeal proteins having substantial homology to the C-terminal region of this family, are not included in this group, though they are contained in a larger family of vitamin-B12 independent methionine synthase.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process.
Probab=89.18 E-value=1.3 Score=24.15 Aligned_cols=123 Identities=24% Similarity=0.368 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEE-----------CCEECCCCCCCHHHHHHHHHC-----CCCEEEEEEEEEECCHHHHH
Q ss_conf 99999999999659989999734-----------263458434178999986412-----56416856788512033676
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVM-----------DGCFVPNISFGADVIRSLRSY-----SDSVFDCHLMISSIDSHINI 80 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDIm-----------Dg~fvpn~~~~~~~i~~i~~~-----t~~~~dvHLMv~~P~~~i~~ 80 (224)
+-|.+|+.-|+++||.-||||=- |=| -.=+.| -|..+|=- .+.-|+.||.-.+-...|+.
T Consensus 602 LAlrdEV~DLE~AGI~iIQiDEPALREgLPLR~~d~h-~~YL~W---AV~aFrla~sgV~~~TQIHTHMCYSeFn~II~~ 677 (778)
T TIGR01371 602 LALRDEVLDLEEAGIKIIQIDEPALREGLPLRKSDWH-SEYLDW---AVEAFRLATSGVKDETQIHTHMCYSEFNDIIEA 677 (778)
T ss_pred HHHHHHHHHHHHCCCCEEEECCHHHCCCCCCCCCCCC-HHHHHH---HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 9999999999876981798540785078887743110-445789---999877752488888663443333774379998
Q ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHH---CCCEEEEEE----ECCCC-HHHHHHHH----HHCCEEEEEEEECCCC
Q ss_conf 4047760799970664215899986776---498259985----23334-47899886----2014028998306776
Q gi|254780975|r 81 IADAGCDIITFHPESSPHIRRSLRTIHA---MGKKTGVAI----NPETP-VAILEDVI----DEIDMILIMTVNPGFG 146 (224)
Q Consensus 81 ~~~~g~d~i~~H~E~~~~~~~~i~~i~~---~g~k~Giai----~p~T~-~~~i~~~l----~~~D~vliM~V~PG~~ 146 (224)
+...-||.|+| |+...=.+.|...++ +...+|+.+ .|--| .+++...| ..++.=++ =|||-||
T Consensus 678 I~~LDADVIsI--E~SRS~~~lL~~f~~~~~Y~~giGpGVYDIHSPRvPS~eE~~~~~~~aL~~~p~~~l-WVNPDCG 752 (778)
T TIGR01371 678 IAALDADVISI--EASRSDMELLDAFKNIFGYPNGIGPGVYDIHSPRVPSVEEMADLIEKALQVLPAERL-WVNPDCG 752 (778)
T ss_pred HHHCCCCCEEH--HHCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCHHHC-EECCCCC
T ss_conf 84325871003--110475579999852036432348721322688867389999999999974005508-0578887
No 303
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=89.08 E-value=1.9 Score=23.14 Aligned_cols=123 Identities=18% Similarity=0.273 Sum_probs=75.2
Q ss_pred HCCCCCCEEEEECCCC--------------------------CCHHHHHHHHHHC-CCEEEEEEECCC------CHHHH-
Q ss_conf 4047760799970664--------------------------2158999867764-982599852333------44789-
Q gi|254780975|r 81 IADAGCDIITFHPESS--------------------------PHIRRSLRTIHAM-GKKTGVAINPET------PVAIL- 126 (224)
Q Consensus 81 ~~~~g~d~i~~H~E~~--------------------------~~~~~~i~~i~~~-g~k~Giai~p~T------~~~~i- 126 (224)
..++|.|-|-+|.-+. .-+.++++.+|+. +..+++-++++. .++..
T Consensus 151 A~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~YGGs~eNR~Rf~lEii~aVr~~~~~~v~vRis~~d~~~gG~~~~d~~ 230 (337)
T PRK13523 151 AKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPDGLTVQDYV 230 (337)
T ss_pred HHHCCCCEEEEECCCCHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHH
T ss_conf 99849998998135435899847923248958558888999889999999999865886399933655578998989999
Q ss_pred --HHHHHH--CCEEEEEEE--ECCCCCCCCCC-HHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCC-CCEEEEC
Q ss_conf --988620--140289983--06776533220-135778998654313865269815899-88999999679-9899974
Q gi|254780975|r 127 --EDVIDE--IDMILIMTV--NPGFGGQQLIE-STIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAG-ADLLVVG 197 (224)
Q Consensus 127 --~~~l~~--~D~vliM~V--~PG~~Gq~f~~-~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~G-ad~~V~G 197 (224)
.+.+.. +|++.+-+- .|. .-...+ ..+.-.+.+| ...++.+.+-|+++ .+.+.++++.| +|.+..|
T Consensus 231 ~~~~~l~~~GvD~i~vs~G~~~~~--~~~~~~g~~~~~a~~ik---~~~~ipvi~vG~i~~~~~ae~~l~~G~aD~V~~g 305 (337)
T PRK13523 231 QYAKWMKEQGVDLIDVSSGAVVPA--RIDVYPGYQVPFAEHIK---EHANIATGAVGLITTGAQAEEILNNNRADLIFIG 305 (337)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCC--CCCCCCCCCHHHHHHHH---HHCCCCEEEECCCCCHHHHHHHHHCCCCCHHHHH
T ss_conf 999999974999899578855477--67778753348999999---8769709998386999999999987994799989
Q ss_pred HHHHCCCCHHH
Q ss_conf 26637899899
Q gi|254780975|r 198 SSFFNQKGEIS 208 (224)
Q Consensus 198 saif~~~d~~~ 208 (224)
.++.-+||...
T Consensus 306 R~~iadPd~p~ 316 (337)
T PRK13523 306 RELLRNPYFPR 316 (337)
T ss_pred HHHHHCCCHHH
T ss_conf 99998910999
No 304
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=88.64 E-value=2.1 Score=22.95 Aligned_cols=121 Identities=19% Similarity=0.317 Sum_probs=75.2
Q ss_pred CCCCCCEEEEECCC-----------C---------------CCHHHHHHHHHHC-CC-EEEEEEECCC----------CH
Q ss_conf 04776079997066-----------4---------------2158999867764-98-2599852333----------44
Q gi|254780975|r 82 ADAGCDIITFHPES-----------S---------------PHIRRSLRTIHAM-GK-KTGVAINPET----------PV 123 (224)
Q Consensus 82 ~~~g~d~i~~H~E~-----------~---------------~~~~~~i~~i~~~-g~-k~Giai~p~T----------~~ 123 (224)
.++|.|-|-+|.-+ + .-+.+++..+|+. |. .+|+-++|.. ..
T Consensus 169 ~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSleNR~Rf~~Eii~aVr~avg~d~v~vRis~~~~~~~~~~g~~~~ 248 (362)
T PRK10605 169 REAGFDLVELHSAHGYLLHQFLSPSSNHRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEE 248 (362)
T ss_pred HHCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHH
T ss_conf 98399989970247369997389766789887899789998899999999999739873799972665656665788768
Q ss_pred HHHHHHHHH-----CCEEEEEEEECCCCC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCC-CCEEEE
Q ss_conf 789988620-----140289983067765-3322013577899865431386526981589988999999679-989997
Q gi|254780975|r 124 AILEDVIDE-----IDMILIMTVNPGFGG-QQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAG-ADLLVV 196 (224)
Q Consensus 124 ~~i~~~l~~-----~D~vliM~V~PG~~G-q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~G-ad~~V~ 196 (224)
+....+++. +|++.+- .|.+.| .++....-.+ +|+ ..+..+..-|+++.+.+.++++.| +|.+-.
T Consensus 249 ~~~~~~~~~l~~~gv~~l~~s--~p~~~~~~~~~~~~~~~---ik~---~v~~PVi~~G~~tpe~Ae~~l~~G~aDlV~~ 320 (362)
T PRK10605 249 ADALYLIEQLGKRGIAYLHMS--EPDWAGGEPYSDAFREK---VRA---RFHGPIIGAGAYTAEKAETLIGKGLIDAVAF 320 (362)
T ss_pred HHHHHHHHHHHHCCCEEEEEC--CCCCCCCCCCCHHHHHH---HHH---HCCCCEEECCCCCHHHHHHHHHCCCCCEEEE
T ss_conf 999999999986297499972--68556898751999999---998---7699789768999999999998899879810
Q ss_pred CHHHHCCCCHHHHH
Q ss_conf 42663789989999
Q gi|254780975|r 197 GSSFFNQKGEISYA 210 (224)
Q Consensus 197 Gsaif~~~d~~~~~ 210 (224)
|.+++-+||....+
T Consensus 321 gR~llADPd~~~K~ 334 (362)
T PRK10605 321 GRDYIANPDLVARL 334 (362)
T ss_pred HHHHHHCCCHHHHH
T ss_conf 06877594589998
No 305
>PRK02227 hypothetical protein; Provisional
Probab=88.62 E-value=2.1 Score=22.94 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCEECCCC-CC---CHHHHHHHHHCC--CCEEEEEEE--EEECCH---HHHHHCCCCC
Q ss_conf 999999999965998999973426345843-41---789999864125--641685678--851203---3676404776
Q gi|254780975|r 18 RLGEEISNITKAGAKQIHFDVMDGCFVPNI-SF---GADVIRSLRSYS--DSVFDCHLM--ISSIDS---HINIIADAGC 86 (224)
Q Consensus 18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~-~~---~~~~i~~i~~~t--~~~~dvHLM--v~~P~~---~i~~~~~~g~ 86 (224)
++++.. ...++|+|.+ |+-+ |+- ++ +|+.+++|+... +.|+..-+= -.+|.. -+......|+
T Consensus 9 ~~~EA~-~a~~~gaDII--DvKn----P~~GaLGa~~p~~I~~I~~~v~~~~~vSatiGD~p~~~~~i~~a~~~~a~~Gv 81 (239)
T PRK02227 9 NLEEAL-EALEGGADII--DVKN----PKEGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTAALAALGAAATGV 81 (239)
T ss_pred CHHHHH-HHHHCCCCEE--EECC----CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf 989999-9985799989--8279----88887889999999999998579971798836978993799999987661399
Q ss_pred CEEEEECCCCCCHHH-------HHHHHHHC--CCE-EEEEEECC-----CCHHHHHHHHHHCCEEEEEEEECCCCCCC-C
Q ss_conf 079997066421589-------99867764--982-59985233-----34478998862014028998306776533-2
Q gi|254780975|r 87 DIITFHPESSPHIRR-------SLRTIHAM--GKK-TGVAINPE-----TPVAILEDVIDEIDMILIMTVNPGFGGQQ-L 150 (224)
Q Consensus 87 d~i~~H~E~~~~~~~-------~i~~i~~~--g~k-~Giai~p~-----T~~~~i~~~l~~~D~vliM~V~PG~~Gq~-f 150 (224)
|||=+=.-...+..+ +...++.. +.+ +.+.+--. .+...+-+.+....+--+|--+-+..|+. |
T Consensus 82 dyVKvGl~~~~~~~~~~~~l~~v~~a~k~~~~~~~~VaV~yAD~~~~~~~~p~~i~~~a~~~g~~gvMiDT~~Kdg~sL~ 161 (239)
T PRK02227 82 DYVKVGLYGTKTAEEAVEVMAAVVRAVKDLDPNKRVVAVLYADAGRDGSISPLDLPAIAAEAGFDGAMLDTAGKDGRSLF 161 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHH
T ss_conf 98999457888679999999999998751167973999998326422478867789999985998999863678887534
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 201357789986543138652698158998899999967998999742663789
Q gi|254780975|r 151 IESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 151 ~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
.--..+.++++.+.....+..+..-|+++.+.++.+...++|.+=.=|++-...
T Consensus 162 d~~~~~~L~~fv~~a~~~gl~~gLAGSL~~~di~~L~~l~Pd~lG~Rga~C~~g 215 (239)
T PRK02227 162 DHMDEEELAEFVAEARAHGLMTALAGSLKLEDIPALKRLGPDILGVRGAVCTGG 215 (239)
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHCCCC
T ss_conf 238999999999999975993998456887888999756999899656546899
No 306
>TIGR00343 TIGR00343 pyridoxine biosynthesis protein; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in S. cerevisiae . Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in C. nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance. ..
Probab=88.41 E-value=1.5 Score=23.76 Aligned_cols=43 Identities=35% Similarity=0.482 Sum_probs=37.0
Q ss_pred EECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf 81589-98899999967998999742663789989999999999
Q gi|254780975|r 174 VDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 174 vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l 216 (224)
.-||| +......+...|+|-+-+||.||++.+|...+..+.+-
T Consensus 210 aaGGvatPadaal~mqlG~~GvfvGsGifks~~P~~~a~aiv~a 253 (298)
T TIGR00343 210 AAGGVATPADAALLMQLGADGVFVGSGIFKSSNPEKLAKAIVEA 253 (298)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 35764655789999984778247534200056778999999999
No 307
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=88.24 E-value=2.2 Score=22.79 Aligned_cols=113 Identities=18% Similarity=0.272 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHCCCEEEEEEECCCCH-HHHHHHHHHCCEEEEEEE-ECCCCCCCCC-CHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 215899986776498259985233344-789988620140289983-0677653322-0135778998654313865269
Q gi|254780975|r 97 PHIRRSLRTIHAMGKKTGVAINPETPV-AILEDVIDEIDMILIMTV-NPGFGGQQLI-ESTIPKIRQAKALIGKRSISLE 173 (224)
Q Consensus 97 ~~~~~~i~~i~~~g~k~Giai~p~T~~-~~i~~~l~~~D~vliM~V-~PG~~Gq~f~-~~~l~kI~~l~~~~~~~~~~I~ 173 (224)
+|+.++++..+.. ++-|...-|++.- -.+.+-|.++--.-+|-- -|=-+||... +..+..|++ +.++.+.
T Consensus 182 Pd~~etl~Aae~L-v~eGF~VlpY~~dDpv~akrLed~Gc~avMPlgsPIGSg~Gi~n~~~i~~i~e------~~~vpvi 254 (327)
T PRK11840 182 PDMVETLKAAEVL-VKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVE------GAKVPVL 254 (327)
T ss_pred CCHHHHHHHHHHH-HHCCCEEEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHH------HCCCCEE
T ss_conf 9858999999999-97898898871698689999987598388622452347888689999999997------3699789
Q ss_pred EECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf 815899-8899999967998999742663789989999999999
Q gi|254780975|r 174 VDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 174 vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l 216 (224)
||.||. ...+...-+.|+|-+-+-|||-.++||...++.++.-
T Consensus 255 vDAGiG~pS~A~~aMElG~daVL~NTAiA~a~~Pv~MA~A~~~a 298 (327)
T PRK11840 255 VDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPILMARAMKLA 298 (327)
T ss_pred EECCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHH
T ss_conf 95798987899999863666666336767269979999999999
No 308
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=87.98 E-value=1.5 Score=23.84 Aligned_cols=60 Identities=15% Similarity=0.263 Sum_probs=32.6
Q ss_pred EEEECCHHHHHHCCC---C--CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHH-HHHHHHH
Q ss_conf 885120336764047---7--6079997066421589998677649825998523334478-9988620
Q gi|254780975|r 70 MISSIDSHINIIADA---G--CDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAI-LEDVIDE 132 (224)
Q Consensus 70 Mv~~P~~~i~~~~~~---g--~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~-i~~~l~~ 132 (224)
.+++|.+-++++... + .-.|-||+|++..-. .+- .-..-++...+.-.|-+-. =..+|+.
T Consensus 124 ~~d~PF~~~d~l~~~~~~~~~~iiVDFHAEtTSEK~-a~g--~yldGrvsavvGTHTHV~TaD~rIL~~ 189 (266)
T COG1692 124 ALDNPFKAADKLLDEIKLGTDLIIVDFHAETTSEKN-AFG--WYLDGRVSAVVGTHTHVPTADERILPK 189 (266)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHH-HHH--EEECCEEEEEEECCCCCCCCCCEECCC
T ss_conf 017978999999974746896499981265215552-010--688672889985467655641140579
No 309
>pfam06073 DUF934 Bacterial protein of unknown function (DUF934). This family consists of several bacterial proteins of unknown function. One of the members of this family is thought to be an oxidoreductase.
Probab=87.72 E-value=2.3 Score=22.58 Aligned_cols=76 Identities=21% Similarity=0.378 Sum_probs=57.2
Q ss_pred EEEEECCCCHHHHHHHHHHCCEEEEEEEE-CCCC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCC
Q ss_conf 99852333447899886201402899830-6776-533220135778998654313865269815899889999996799
Q gi|254780975|r 114 GVAINPETPVAILEDVIDEIDMILIMTVN-PGFG-GQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGA 191 (224)
Q Consensus 114 Giai~p~T~~~~i~~~l~~~D~vliM~V~-PG~~-Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Ga 191 (224)
|+-|.|+.+++.+.+.++.+..| .++ |.|. |. .++.-+.||+.+. +.-+|-.=|.|-.+.+.-+..+|.
T Consensus 1 GV~L~~d~d~~~l~~~L~~l~lI---~i~Fp~f~DGR-----gfS~Ar~LR~r~g-y~GelRA~G~vl~DQl~~~~R~Gf 71 (110)
T pfam06073 1 GVWLEPDDDPEELAPDLDRLALI---ALDFPAFTDGR-----GYSQARLLRERYG-YKGELRAVGDVLRDQLFFMLRCGF 71 (110)
T ss_pred CEEECCCCCHHHHHHHHCCCCEE---EEECCCCCCCC-----HHHHHHHHHHHCC-CCCCEEEECCCHHHHHHHHHHCCC
T ss_conf 94626999999998754557679---99889876862-----4079999999719-987157744500989999997598
Q ss_pred CEEEECH
Q ss_conf 8999742
Q gi|254780975|r 192 DLLVVGS 198 (224)
Q Consensus 192 d~~V~Gs 198 (224)
|.+.+-.
T Consensus 72 dsf~l~~ 78 (110)
T pfam06073 72 DSFALRA 78 (110)
T ss_pred CEEEECC
T ss_conf 8797569
No 310
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=86.87 E-value=2.6 Score=22.28 Aligned_cols=131 Identities=18% Similarity=0.237 Sum_probs=76.0
Q ss_pred EEEEEECCHHHHHHCC--CCCCEEEEECC----CCCCHHHHHHHHHHCC--CEEEEEEECCCCHHHHHHHHH--HCCEEE
Q ss_conf 6788512033676404--77607999706----6421589998677649--825998523334478998862--014028
Q gi|254780975|r 68 HLMISSIDSHINIIAD--AGCDIITFHPE----SSPHIRRSLRTIHAMG--KKTGVAINPETPVAILEDVID--EIDMIL 137 (224)
Q Consensus 68 HLMv~~P~~~i~~~~~--~g~d~i~~H~E----~~~~~~~~i~~i~~~g--~k~Giai~p~T~~~~i~~~l~--~~D~vl 137 (224)
||.-..-..+|-+... -|.+.|+-..- +.+|+.+.|..+|+.+ .++++=+-....++.+.--.. ..|.|+
T Consensus 253 ~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~ 332 (485)
T COG0069 253 QLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVIT 332 (485)
T ss_pred CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEE
T ss_conf 89976579889976189988777589974665698899999999996188970699992565567787666404698899
Q ss_pred EEEEECCCCCCCCC---C--------HHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHH
Q ss_conf 99830677653322---0--------135778998654313865269815899-88999999679989997426
Q gi|254780975|r 138 IMTVNPGFGGQQLI---E--------STIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSS 199 (224)
Q Consensus 138 iM~V~PG~~Gq~f~---~--------~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsa 199 (224)
+=+- +|-.|-... . ...+--..|++.--+..+.|++|||+. ...+.+....|||.+-.|++
T Consensus 333 IdG~-~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa 405 (485)
T COG0069 333 IDGA-DGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTA 405 (485)
T ss_pred ECCC-CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHCHH
T ss_conf 7589-986787856576368707998899999999975986416999428706789999999708645520219
No 311
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=86.87 E-value=2.6 Score=22.28 Aligned_cols=113 Identities=19% Similarity=0.283 Sum_probs=62.0
Q ss_pred HHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCC--CCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 998677649825998523334478998862-0140289983067765332--2013577899865431386526981589
Q gi|254780975|r 102 SLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQL--IESTIPKIRQAKALIGKRSISLEVDGGV 178 (224)
Q Consensus 102 ~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f--~~~~l~kI~~l~~~~~~~~~~I~vDGGv 178 (224)
.++|+|+.=..+ |.+.-=...+.-..-.+ -+|-|.| | |= +|..+ .+.+++-+-++++... ..+++.+||||
T Consensus 236 di~wlr~~w~~p-lvlKGIl~~eDA~~A~~~G~dgIiV-S-NH--GGRQLD~apa~i~~LpeI~~aV~-~~~~V~~DgGi 309 (381)
T PRK11197 236 DLEWIREFWDGP-MVIKGILDPEDARDAVRFGADGIVV-S-NH--GGRQLDGVLSSARALPAIADAVK-GDIAILADSGI 309 (381)
T ss_pred HHHHHHHHCCCC-EEEECCCCHHHHHHHHHCCCCEEEE-E-CC--CCCCCCCCCCHHHHHHHHHHHHC-CCCEEEEECCC
T ss_conf 999999872997-6785258899999999669988999-5-77--63215678448999999999867-89739996897
Q ss_pred CH-HHHHHHHHCCCCEEEECH-HHHCC-CCHHHHHHHHHHHHHHH
Q ss_conf 98-899999967998999742-66378-99899999999999978
Q gi|254780975|r 179 TS-RNIKSLVQAGADLLVVGS-SFFNQ-KGEISYAKRLNDLKKSA 220 (224)
Q Consensus 179 n~-~~i~~l~~~Gad~~V~Gs-aif~~-~d~~~~~~~l~~l~~~a 220 (224)
+. ..+-+....||+.+-+|. ++|+- -...+-.+...++.+.+
T Consensus 310 RrG~DV~KALALGA~aV~vGRp~lygLaa~G~~GV~~~l~iL~~E 354 (381)
T PRK11197 310 RNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKE 354 (381)
T ss_pred CCHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 866899999976998897675999987713388999999999999
No 312
>TIGR01418 PEP_synth phosphoenolpyruvate synthase; InterPro: IPR006319 This family represents phosphoenolpyruvate synthase; also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. ; GO: 0008986 pyruvate water dikinase activity, 0006094 gluconeogenesis.
Probab=86.76 E-value=2.7 Score=22.24 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=27.3
Q ss_pred EEEEEEEEECCH--HHHHHCCCCCCEEEEECCCCCCH
Q ss_conf 685678851203--36764047760799970664215
Q gi|254780975|r 65 FDCHLMISSIDS--HINIIADAGCDIITFHPESSPHI 99 (224)
Q Consensus 65 ~dvHLMv~~P~~--~i~~~~~~g~d~i~~H~E~~~~~ 99 (224)
+++-+|++-|.. .+++|++.|.|=.+| .++||
T Consensus 755 l~~~vM~E~PsnvlLAd~f~~~GfDGFSi---GSNDL 788 (877)
T TIGR01418 755 LEVYVMCEVPSNVLLADEFAKLGFDGFSI---GSNDL 788 (877)
T ss_pred CEEEEEEEHHHHHHHHHHHHHHCCCEEEE---CCCHH
T ss_conf 57999883568999999898508771565---75168
No 313
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=86.68 E-value=2.7 Score=22.21 Aligned_cols=97 Identities=15% Similarity=0.230 Sum_probs=58.8
Q ss_pred HHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-
Q ss_conf 998677649825998523334478998862-014028998306776533220135778998654313865269815899-
Q gi|254780975|r 102 SLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT- 179 (224)
Q Consensus 102 ~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn- 179 (224)
.++|+++.-..+ +.+.-=...+.-..-.+ -+|.|.+ | |-|--.....+.+++-+-++++... ..++|.+||||+
T Consensus 212 di~~lr~~~~lp-lilKGI~~~eDA~~A~~~G~dgIvV-S-NHGGRQLD~~p~~i~~LpeI~~av~-~~~~V~~DgGIR~ 287 (351)
T cd04737 212 DIEFIAKISGLP-VIVKGIQSPEDADVAINAGADGIWV-S-NHGGRQLDGGPASFDSLPEIAEAVN-HRVPIIFDSGVRR 287 (351)
T ss_pred HHHHHHHHCCCC-EEECCCCCHHHHHHHHHCCCCEEEE-C-CCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEECCCCCC
T ss_conf 999999864998-5323667799999998749988997-7-8751235676047889999999866-8964997698674
Q ss_pred HHHHHHHHHCCCCEEEECH-HHHC
Q ss_conf 8899999967998999742-6637
Q gi|254780975|r 180 SRNIKSLVQAGADLLVVGS-SFFN 202 (224)
Q Consensus 180 ~~~i~~l~~~Gad~~V~Gs-aif~ 202 (224)
-..+-+....|||.+-+|. ++|.
T Consensus 288 G~DV~KALALGA~aV~iGRp~l~g 311 (351)
T cd04737 288 GEHVFKALASGADAVAVGRPVLYG 311 (351)
T ss_pred HHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 689999997699889757899998
No 314
>PRK08508 biotin synthase; Provisional
Probab=86.41 E-value=2.8 Score=22.12 Aligned_cols=189 Identities=14% Similarity=0.116 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCC--HHHHHHHHHCC-CCEEEEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf 889999999999965998999973426345843417--89999864125-641685678851203367640477607999
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG--ADVIRSLRSYS-DSVFDCHLMISSIDSHINIIADAGCDIITF 91 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~--~~~i~~i~~~t-~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~ 91 (224)
+.-.+.+..+...+.|+..+-+ ++-|.=.+.-.+. -+.++.||+.+ ++.+-+-+ =.-.......+.++|+|+..-
T Consensus 41 ~~eeIl~~A~~a~~~G~~rf~l-v~sg~~~~~~~~e~v~~~v~~Ik~~~~~l~~c~sl-G~l~~e~~~~LkeAGvdrY~h 118 (279)
T PRK08508 41 EIEQIVQEAKMARANGALGFCL-VTAGRGLDDKKLEYVAKAAKAVKKEVPGLHLIACN-GMASVEQLKELKKAGIFSYNH 118 (279)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE-EEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC-CCCCHHHHHHHHHCCCCEECC
T ss_conf 9999999999999759976899-98236887544999999999986337993576117-857999999999839712307
Q ss_pred ECCCCCC-------------HHHHHHHHHHCCCEE--EEEEECCCCHHHHHHHH---H--HCCEEEEEEEE--CC--CCC
Q ss_conf 7066421-------------589998677649825--99852333447899886---2--01402899830--67--765
Q gi|254780975|r 92 HPESSPH-------------IRRSLRTIHAMGKKT--GVAINPETPVAILEDVI---D--EIDMILIMTVN--PG--FGG 147 (224)
Q Consensus 92 H~E~~~~-------------~~~~i~~i~~~g~k~--Giai~p~T~~~~i~~~l---~--~~D~vliM~V~--PG--~~G 147 (224)
-.|+.+. =.++++.+|+.|.++ |.-+..+...+.....+ . .+|.|=+.--. || +..
T Consensus 119 NlETs~~~y~~I~tThty~dRl~tl~~~k~aGl~vCsGgIiGlGEt~edrve~a~~L~eL~~dsVPIN~liPi~GTPLe~ 198 (279)
T PRK08508 119 NLETSKEFFPKICTTHSWEERFQTCLNAKEAGLGLCSGGIFGLGESWEDRISMLKSLASLSPHSTPINFFIPNPALPLDT 198 (279)
T ss_pred CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCC
T ss_conf 66767687576589988899999999999819948678544789998999999999983899875156765899998888
Q ss_pred CCCCC-HHHHHHHHHHHHHHCCCCEEEEECCCC---HHHHHHHHHCCCCEEEECHHHHCCCCHH
Q ss_conf 33220-135778998654313865269815899---8899999967998999742663789989
Q gi|254780975|r 148 QQLIE-STIPKIRQAKALIGKRSISLEVDGGVT---SRNIKSLVQAGADLLVVGSSFFNQKGEI 207 (224)
Q Consensus 148 q~f~~-~~l~kI~~l~~~~~~~~~~I~vDGGvn---~~~i~~l~~~Gad~~V~Gsaif~~~d~~ 207 (224)
.+..+ .++.-|.-+|=+.|+.. |-+-||-. .+.-..+..+|||.+..|.++-..-...
T Consensus 199 ~~l~~~e~lr~iAl~RlilP~a~--Ir~agGRe~~l~~~q~~~~~aGaN~i~~G~yLTt~G~~~ 260 (279)
T PRK08508 199 PTLSADEALEIVRLAKEALPNAR--LMVAGGREVVFGERQYEIFEAGANAIVIGDYLTTKGEAP 260 (279)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCE--EEECCCHHHHCHHHHHHHHHHCCCEEEECCCCCCCCCCH
T ss_conf 99999999999999999789876--562465244556369999984684688866527899786
No 315
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.39 E-value=2.8 Score=22.12 Aligned_cols=126 Identities=15% Similarity=0.212 Sum_probs=72.4
Q ss_pred HCCCCCCEEEEECCCC---------------C-----------CHHHHHHHHHHC-C------CEEEEEEECCC------
Q ss_conf 4047760799970664---------------2-----------158999867764-9------82599852333------
Q gi|254780975|r 81 IADAGCDIITFHPESS---------------P-----------HIRRSLRTIHAM-G------KKTGVAINPET------ 121 (224)
Q Consensus 81 ~~~~g~d~i~~H~E~~---------------~-----------~~~~~i~~i~~~-g------~k~Giai~p~T------ 121 (224)
..++|.|-|-+|.-+. + -+.++++.+|+. | .-+|+=++++.
T Consensus 153 A~~AGfDgVEiH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~vg~~~~~df~vgvRis~~e~~~~G~ 232 (353)
T cd04735 153 AIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGI 232 (353)
T ss_pred HHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHCCCCCC
T ss_conf 99839998997546575999853998899847367988999889999999999985400589733675158654147999
Q ss_pred CHHHHHHHH---HH--CCEEEEEEEECCCCCCCC-CCHHHHH-HHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCE
Q ss_conf 447899886---20--140289983067765332-2013577-899865431386526981589-988999999679989
Q gi|254780975|r 122 PVAILEDVI---DE--IDMILIMTVNPGFGGQQL-IESTIPK-IRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADL 193 (224)
Q Consensus 122 ~~~~i~~~l---~~--~D~vliM~V~PG~~Gq~f-~~~~l~k-I~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~ 193 (224)
.++....++ .. +|++.+-+ -++..... .+..... ...+++. ...++.+.+-||+ +.+.+.++++.|+|.
T Consensus 233 ~~~e~~~~~~~l~~~gvD~l~vs~--g~~~~~~~~~~~~~~~~~~~~~~~-~~~~iPvi~~G~i~~~~~ae~~l~~gaD~ 309 (353)
T cd04735 233 RMEDTLALVDKLADKGLDYLHISL--WDFDRKSRRGRDDNQTIMELVKER-IAGRLPLIAVGSINTPDDALEALETGADL 309 (353)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCCCCCCCHHHHHHHHHH-HCCCCCEEEECCCCCHHHHHHHHHCCCCH
T ss_conf 999999999999847998899603--776677766777535589999999-67898099989999899999999869982
Q ss_pred EEECHHHHCCCCHHHH
Q ss_conf 9974266378998999
Q gi|254780975|r 194 LVVGSSFFNQKGEISY 209 (224)
Q Consensus 194 ~V~Gsaif~~~d~~~~ 209 (224)
+..|.++.-+||...-
T Consensus 310 V~~gR~liadPd~~~K 325 (353)
T cd04735 310 VAIGRGLLVDPDWVEK 325 (353)
T ss_pred HHHHHHHHHCHHHHHH
T ss_conf 9986999979319999
No 316
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II; InterPro: IPR011289 Fructose-1,6-bisphosphate (FBP) aldolases reversibly cleave FBP to two triose phosphates, glycerone phophate and D-glyceraldehyde 3-phosphate. They play a key role in both glycolysis (FBP cleavage) and gluconeogenesis (FBP synthesis). These enzymes can be divide into two classes based on their mode of catalysis. Class I FBP aldolases form a Schiff-base intermediate between glycerone phophate and an active site lysine residue, while the class II enzymes use a divalent cation such as Zn(2+) for catalysis . This entry represents class II FBP aldolases found in Gram-positive bacteria, a variety of Gram-negative baceria, and amitochondriate protists. These enzymes are homotetramers where each momomer forms a TIM barrel fold .; GO: 0004332 fructose-bisphosphate aldolase activity, 0008270 zinc ion binding, 0006096 glycolysis, 0030388 fructose 16-bisphosphate metabolic process.
Probab=86.33 E-value=1.1 Score=24.77 Aligned_cols=135 Identities=13% Similarity=0.226 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEE--CC--EECCC------------CCCCHHHHHHHHHCCC-CEEEEEEEEEECCHHHH
Q ss_conf 99999999999659989999734--26--34584------------3417899998641256-41685678851203367
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVM--DG--CFVPN------------ISFGADVIRSLRSYSD-SVFDCHLMISSIDSHIN 79 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDIm--Dg--~fvpn------------~~~~~~~i~~i~~~t~-~~~dvHLMv~~P~~~i~ 79 (224)
.+.++.-+.+++.++|+|=.=|- =| .|-+| -.++++.++.|.+.|+ +||=.|=-+.=|..+++
T Consensus 164 adp~Ea~~fV~eT~~D~LA~aIGt~HGa~kykgeqCtrnaDGvLiWp~LdF~~l~~I~~~~~G~PLVLHGaS~VP~e~v~ 243 (339)
T TIGR01859 164 ADPDEAEQFVKETGVDYLAAAIGTSHGAFKYKGEQCTRNADGVLIWPGLDFERLKEIKELTNGIPLVLHGASSVPAEIVK 243 (339)
T ss_pred CCHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHH
T ss_conf 58799999997638775401003502357888665330467235488889789999987508976673576568588999
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEE-EECCCCH-----HHHHHHHH--HCCEEEEEEEECC-CCCCCC
Q ss_conf 6404776079997066421589998677649825998-5233344-----78998862--0140289983067-765332
Q gi|254780975|r 80 IIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVA-INPETPV-----AILEDVID--EIDMILIMTVNPG-FGGQQL 150 (224)
Q Consensus 80 ~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Gia-i~p~T~~-----~~i~~~l~--~~D~vliM~V~PG-~~Gq~f 150 (224)
.+.++|.+.= .+.-=|++.|++. ++.|++ +|-+|+. ..++++|. ... =+-+. ++. |.-.+|
T Consensus 244 ~~~~~GG~L~----ds~GIP~e~ikkA----i~lGiaKiNidTe~riAf~~~~R~~l~dy~a~-dl~l~-k~~~yDPRK~ 313 (339)
T TIGR01859 244 EVEEYGGELK----DSKGIPEEQIKKA----IKLGIAKINIDTECRIAFTAAIRKVLEDYEAK-DLELE-KKDEYDPRKI 313 (339)
T ss_pred HHHHHCCCCC----CCCCCCHHHHHHH----HHCCCCEEEECCHHHHHHHHHHHHHHHHCCCC-CCCCC-CCCCCCCCCC
T ss_conf 9998187677----7776867899999----97291417658167899999999998411435-54025-8874466333
Q ss_pred CCHHHHHHHHH
Q ss_conf 20135778998
Q gi|254780975|r 151 IESTIPKIRQA 161 (224)
Q Consensus 151 ~~~~l~kI~~l 161 (224)
.-...+-|++.
T Consensus 314 L~p~~~a~k~~ 324 (339)
T TIGR01859 314 LGPAREAIKET 324 (339)
T ss_pred CCHHHHHHHHH
T ss_conf 53168999999
No 317
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=86.27 E-value=2.8 Score=22.08 Aligned_cols=183 Identities=15% Similarity=0.240 Sum_probs=117.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf 70632588999999999996599899997342634584341--7899998641256416856788512033676404776
Q gi|254780975|r 9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC 86 (224)
Q Consensus 9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~ 86 (224)
|+.=+.|+..++--++..++.+..-+ +.+-.+.. ...++ -...++.+.+..+.|+-+||==-.....+....++|.
T Consensus 16 ~AfNv~~~e~~~avi~AAee~~sPvI-lq~s~~~~-~~~g~~~~~~~~~~~a~~~~VPV~lHLDH~~~~e~i~~ai~~Gf 93 (276)
T cd00947 16 GAFNINNLETLKAILEAAEETRSPVI-LQISEGAI-KYAGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGF 93 (276)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEE-EECCHHHH-HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf 98787989999999999999689999-99786177-65899999999999999779999996687678999999998399
Q ss_pred CEEEEECCCCC---C---HHHHHHHHHHCCCEE----EEEE----------ECCCCHHHHHHHHHH--CCEEEEEEEECC
Q ss_conf 07999706642---1---589998677649825----9985----------233344789988620--140289983067
Q gi|254780975|r 87 DIITFHPESSP---H---IRRSLRTIHAMGKKT----GVAI----------NPETPVAILEDVIDE--IDMILIMTVNPG 144 (224)
Q Consensus 87 d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Giai----------~p~T~~~~i~~~l~~--~D~vliM~V~PG 144 (224)
+.|-+-.-..+ + -.++.++++..|+-+ |-.= ...|.++....+++. +|.+ .|--|
T Consensus 94 ~SVM~DgS~lp~eeNi~~T~~vv~~ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~peea~~Fv~~TgvD~L---AvaiG 170 (276)
T cd00947 94 SSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDAL---AVAIG 170 (276)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE---EEECC
T ss_conf 879852898999999999999999999819848998640467567766653334899999999998598878---76416
Q ss_pred CC-----C-C-CCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 76-----5-3-3220135778998654313865269815--89988999999679989997426637
Q gi|254780975|r 145 FG-----G-Q-QLIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 145 ~~-----G-q-~f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
.. + . .++ +++++++++.. ++++-.-| |+..+.++++.+.|+.-+-.++.+..
T Consensus 171 n~HG~yk~~~p~L~---~~~L~~I~~~~---~vPLVlHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~~ 231 (276)
T cd00947 171 TSHGAYKGGEPKLD---FDRLKEIAERV---NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRL 231 (276)
T ss_pred CCCCCCCCCCCCCC---HHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHH
T ss_conf 43445689998648---89999999973---998797579999999999999849759986738999
No 318
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=86.20 E-value=2.8 Score=22.06 Aligned_cols=129 Identities=21% Similarity=0.313 Sum_probs=83.6
Q ss_pred EEECCHHHHHHCCCCCCEEEEECCCCCC--------HHHHHHHHHHCCCEEEE-EEECCCC--HHHHHHHHH---HC---
Q ss_conf 8512033676404776079997066421--------58999867764982599-8523334--478998862---01---
Q gi|254780975|r 71 ISSIDSHINIIADAGCDIITFHPESSPH--------IRRSLRTIHAMGKKTGV-AINPETP--VAILEDVID---EI--- 133 (224)
Q Consensus 71 v~~P~~~i~~~~~~g~d~i~~H~E~~~~--------~~~~i~~i~~~g~k~Gi-ai~p~T~--~~~i~~~l~---~~--- 133 (224)
.+.|++..+.....|-+++.+-.-.-+| ..+++..||+.+-.+.| +|-|+-. ...++-+++ ++
T Consensus 99 ~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ir~~~P~t~iEvL~PDF~G~~~al~~v~~~~pdV~nH 178 (306)
T COG0320 99 PDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADAGPDVFNH 178 (306)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCHHHC
T ss_conf 74278999999983898699975315666564568999999999963999648983865467899999998369611004
Q ss_pred --CEE--EEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECCCCH----HHHHHHHHCCCCEEEECHHHHCC
Q ss_conf --402--899830677653322013577899865431386--52698158998----89999996799899974266378
Q gi|254780975|r 134 --DMI--LIMTVNPGFGGQQLIESTIPKIRQAKALIGKRS--ISLEVDGGVTS----RNIKSLVQAGADLLVVGSSFFNQ 203 (224)
Q Consensus 134 --D~v--liM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~--~~I~vDGGvn~----~~i~~l~~~Gad~~V~Gsaif~~ 203 (224)
.-| |--.|.||...+ .+++-++.++++.+.-- -.|.+-=|=+. ++...|.++|+|++..|-++=-+
T Consensus 179 NvETVprL~~~VRp~A~Y~----~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqPS 254 (306)
T COG0320 179 NVETVPRLYPRVRPGATYE----RSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPS 254 (306)
T ss_pred CCCCCHHCCCCCCCCCCHH----HHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 5200001142568987688----899999999985898631121355057768999999999998599899730014776
No 319
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.19 E-value=2.8 Score=22.05 Aligned_cols=186 Identities=17% Similarity=0.178 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEE-ECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEE-CCHH------HHHHCCCCC
Q ss_conf 889999999999965998999973-42634584341789999864125641685678851-2033------676404776
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDV-MDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISS-IDSH------INIIADAGC 86 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDI-mDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~-P~~~------i~~~~~~g~ 86 (224)
.+.+.++.++.. ..|.|-+.+-= -.|..--|| |..++.+++.+..-..+---+-+ |.+- .--..-+|+
T Consensus 6 SPin~eEA~eAi-eGGAdIiDVKNP~EGSLGANF---PWvIr~i~Ev~p~d~~vSAT~GDvpYKPGT~slAalGaav~Ga 81 (235)
T COG1891 6 SPINREEAIEAI-EGGADIIDVKNPAEGSLGANF---PWVIREIREVVPEDQEVSATVGDVPYKPGTASLAALGAAVAGA 81 (235)
T ss_pred CCCCHHHHHHHH-HCCCCEEECCCCCCCCCCCCC---HHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC
T ss_conf 567789999986-178866742684657666887---0799999975856635324306778898548899887675077
Q ss_pred CEEEEECCCCCCHHH-------HHHHHHHCCC-EEEEEEE--CCCCHHHHHHHH-H------HCCEEEEEE-EECCCCCC
Q ss_conf 079997066421589-------9986776498-2599852--333447899886-2------014028998-30677653
Q gi|254780975|r 87 DIITFHPESSPHIRR-------SLRTIHAMGK-KTGVAIN--PETPVAILEDVI-D------EIDMILIMT-VNPGFGGQ 148 (224)
Q Consensus 87 d~i~~H~E~~~~~~~-------~i~~i~~~g~-k~Giai~--p~T~~~~i~~~l-~------~~D~vliM~-V~PG~~Gq 148 (224)
|||-+-.=.+.+-++ +....|..+- +.-+|-. -...+..++|++ | -+|.+++=| +..|.+
T Consensus 82 DYiKVGLYg~kn~~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~P~vaa~ag~DvaMvDTaiKDGks-- 159 (235)
T COG1891 82 DYIKVGLYGTKNEEEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGSVSPLLLPEVAAEAGADVAMVDTAIKDGKS-- 159 (235)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHCCCCCCCCCHHHHHHCCCCEEEEECCCCCCHH--
T ss_conf 647873023665999999999999998613877448861443012116768231178898638988987500036516--
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf 3220135778998654313865269815899889999996799899974266378998
Q gi|254780975|r 149 QLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGE 206 (224)
Q Consensus 149 ~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~ 206 (224)
-|.-...+.+.++-++-.+++++...-|++..+.++.+.+.|+|++=+-++.-..-|.
T Consensus 160 lFdfm~~e~l~eFvd~Ah~hGL~~AlAGs~~~ehlp~l~eig~DivGvRgaaC~~GDR 217 (235)
T COG1891 160 LFDFMDEEELEEFVDLAHEHGLEVALAGSLKFEHLPILKEIGPDIVGVRGAACEGGDR 217 (235)
T ss_pred HHHHHCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCCCCC
T ss_conf 7755059999999999987245877504455000527887188735520000257874
No 320
>pfam01070 FMN_dh FMN-dependent dehydrogenase.
Probab=86.13 E-value=2.9 Score=22.03 Aligned_cols=143 Identities=15% Similarity=0.276 Sum_probs=86.4
Q ss_pred HHHHHHCCCCEEEEEEEEEEC----CHHHHHHCCCCCCEEEEECCCCCC--------HHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 998641256416856788512----033676404776079997066421--------58999867764982599852333
Q gi|254780975|r 54 IRSLRSYSDSVFDCHLMISSI----DSHINIIADAGCDIITFHPESSPH--------IRRSLRTIHAMGKKTGVAINPET 121 (224)
Q Consensus 54 i~~i~~~t~~~~dvHLMv~~P----~~~i~~~~~~g~d~i~~H~E~~~~--------~~~~i~~i~~~g~k~Giai~p~T 121 (224)
++++.+...-+.=..|.+... ++.++....+|++-+.+|..+... --+.++|+++.=.-+ +.+.-=.
T Consensus 100 ~e~i~~~~~~~~~fQly~~~d~~~~~~~i~ra~~ag~~al~ltvD~~~~g~r~~d~r~~~~i~~l~~~~~~P-vivKGI~ 178 (301)
T pfam01070 100 LEEVAAAAGGPLWFQLYVPKDRELTEDLLERAEAAGYKALVLTVDTPVLGNRERDLRNGDDLAWLRDQWKGP-LVLKGIL 178 (301)
T ss_pred HHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCC-EEEECCC
T ss_conf 278898579976899874588899999999999749997999726876577853204399999999866998-8998289
Q ss_pred CHHHHHHHHHH-CCEEEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHHCCCCEEEEC
Q ss_conf 44789988620-1402899830677653--322013577899865431386526981589988-9999996799899974
Q gi|254780975|r 122 PVAILEDVIDE-IDMILIMTVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVTSR-NIKSLVQAGADLLVVG 197 (224)
Q Consensus 122 ~~~~i~~~l~~-~D~vliM~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~-~i~~l~~~Gad~~V~G 197 (224)
+.+.-+...+. +|.|.+ | +.+|. .+-+.+++-+.++++... .+++|.+||||+.- .+-+....|||.+-+|
T Consensus 179 s~eDA~~a~~~Gv~~I~V-S---nHGGRqlD~~~~t~~~L~eI~~~v~-~~~~i~~DGGIR~G~DV~KAlALGA~~V~iG 253 (301)
T pfam01070 179 SPEDAKRAVEAGVDGIVV-S---NHGGRQLDGAPATIDALPEIVAAVG-GRIPVLVDGGIRRGTDVLKALALGADAVLLG 253 (301)
T ss_pred CHHHHHHHHHCCCCEEEE-C---CCCCCCCCCCCCHHHHHHHHHHHHC-CCEEEEECCCCCCCHHHHHHHHCCCCEEEEC
T ss_conf 999999999859999996-4---9985446888679999999999856-7748996387476268999998089866556
Q ss_pred HH-HHC
Q ss_conf 26-637
Q gi|254780975|r 198 SS-FFN 202 (224)
Q Consensus 198 sa-if~ 202 (224)
.. ++.
T Consensus 254 Rp~l~a 259 (301)
T pfam01070 254 RPFLYG 259 (301)
T ss_pred HHHHHH
T ss_conf 899999
No 321
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=85.97 E-value=2.9 Score=21.98 Aligned_cols=122 Identities=13% Similarity=0.157 Sum_probs=73.1
Q ss_pred HCCCCCCEEEEECCCC----------------------C----CHHHHHHHHHHC-CC--EEEEEEECCC------CHHH
Q ss_conf 4047760799970664----------------------2----158999867764-98--2599852333------4478
Q gi|254780975|r 81 IADAGCDIITFHPESS----------------------P----HIRRSLRTIHAM-GK--KTGVAINPET------PVAI 125 (224)
Q Consensus 81 ~~~~g~d~i~~H~E~~----------------------~----~~~~~i~~i~~~-g~--k~Giai~p~T------~~~~ 125 (224)
..++|.|-|-+|.-+. + -+.++++.+|+. |- -+|+=+++.. ++++
T Consensus 146 A~~AGfDgVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~eNR~Rf~~Eiv~aVr~~vg~d~~v~~Ris~~d~~~~G~~~~e 225 (353)
T cd02930 146 AREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEE 225 (353)
T ss_pred HHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHH
T ss_conf 99829998996256761487733875478857457987888799999999999970998749997360126899989999
Q ss_pred HHHHHHH-----CCEEEEEEEECCCCCC-------CCCCHH-HHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCC-
Q ss_conf 9988620-----1402899830677653-------322013-577899865431386526981589-988999999679-
Q gi|254780975|r 126 LEDVIDE-----IDMILIMTVNPGFGGQ-------QLIEST-IPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAG- 190 (224)
Q Consensus 126 i~~~l~~-----~D~vliM~V~PG~~Gq-------~f~~~~-l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~G- 190 (224)
...++.. +|++.+-+ |+... .+-+.. ..-.+.+| ...++.+.+-||+ +.+.+.++++.|
T Consensus 226 ~~~~~~~l~~~GvD~i~vs~---G~~~~~~~~~~~~~p~g~~~~~a~~ir---~~~~~Pvi~~G~i~~p~~ae~~l~~g~ 299 (353)
T cd02930 226 VVALAKALEAAGADILNTGI---GWHEARVPTIATSVPRGAFAWATAKLK---RAVDIPVIASNRINTPEVAERLLADGD 299 (353)
T ss_pred HHHHHHHHHHCCCCEEEECC---CCCCCCCCCCCCCCCCHHHHHHHHHHH---HHCCCCEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999981999999637---744466875334577236699999988---754834896599798999999998799
Q ss_pred CCEEEECHHHHCCCCHHH
Q ss_conf 989997426637899899
Q gi|254780975|r 191 ADLLVVGSSFFNQKGEIS 208 (224)
Q Consensus 191 ad~~V~Gsaif~~~d~~~ 208 (224)
+|.+..|.++.-+||...
T Consensus 300 aD~V~~gR~liadPdl~~ 317 (353)
T cd02930 300 ADMVSMARPFLADPDFVA 317 (353)
T ss_pred CCHHHHHHHHHHCCHHHH
T ss_conf 624784099876936999
No 322
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=85.76 E-value=3 Score=21.92 Aligned_cols=141 Identities=9% Similarity=0.076 Sum_probs=73.7
Q ss_pred CCEEEEEEEEEECCHHHH---HHCCCCCCEEEEECCC--------------CCCH---HHHHHHHHHC---CC----EEE
Q ss_conf 641685678851203367---6404776079997066--------------4215---8999867764---98----259
Q gi|254780975|r 62 DSVFDCHLMISSIDSHIN---IIADAGCDIITFHPES--------------SPHI---RRSLRTIHAM---GK----KTG 114 (224)
Q Consensus 62 ~~~~dvHLMv~~P~~~i~---~~~~~g~d~i~~H~E~--------------~~~~---~~~i~~i~~~---g~----k~G 114 (224)
..|+-+.|+-.+|+...+ .+.+.|++.|-+-.-+ ..++ .++++.+++. +. |.-
T Consensus 62 ~~Pv~vQl~G~dpe~~a~aA~~~~e~g~~~IDlN~GCP~~~V~k~g~Gs~Ll~~p~~~~~iv~a~~~~v~~~iPVtvK~R 141 (312)
T PRK10550 62 GTLVRIQLLGQYPQWLAENAARAVELGSYGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR 141 (312)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 88368884278889999999999976999662547999789668992685328977999999999974587899547753
Q ss_pred EEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCH--HHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHH-HHCC
Q ss_conf 985233344789988620140289983067765332201--357789986543138652698158998-899999-9679
Q gi|254780975|r 115 VAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIES--TIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSL-VQAG 190 (224)
Q Consensus 115 iai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~--~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l-~~~G 190 (224)
+...-......+.+.+... -+-.++|+|...-|.+... -.+.|+++++. .++.+..-|+|.. +.+..+ ...|
T Consensus 142 lG~~~~~~~~e~~~~~~~~-G~~~ltvH~RT~~q~y~~~~~dw~~i~~~~~~---~~iPvi~NGdI~s~~d~~~~~~~tg 217 (312)
T PRK10550 142 LGWDSGDRKFEIADAVQQA-GATELVVHGRTKEQGYRAEHIDWQAIGEIRQR---LTIPVIANGEIWDWQSAQQCMAISG 217 (312)
T ss_pred CCCCCCCHHHHHHHHHHHC-CCCEEEEECCCHHHCCCCCCCCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHHHC
T ss_conf 5899863199999999973-99879990552653589983489999999974---8998997079599999999987148
Q ss_pred CCEEEECHHHHCCCCH
Q ss_conf 9899974266378998
Q gi|254780975|r 191 ADLLVVGSSFFNQKGE 206 (224)
Q Consensus 191 ad~~V~Gsaif~~~d~ 206 (224)
+|-+-.|.+.+++|..
T Consensus 218 ~dgvMiGRgal~nP~l 233 (312)
T PRK10550 218 CDAVMIGRGALNIPNL 233 (312)
T ss_pred CCEEEECHHHHHCCHH
T ss_conf 9999965855309779
No 323
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=85.71 E-value=3 Score=21.90 Aligned_cols=115 Identities=11% Similarity=0.160 Sum_probs=63.9
Q ss_pred HHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf 998677649825998523334478998862-0140289983067765332201357789986543138652698158998
Q gi|254780975|r 102 SLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS 180 (224)
Q Consensus 102 ~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~ 180 (224)
.++|+|+.=.. =+.+.-=...+.-..-.+ -+|-|.| | |-|--.-.--+.+++-+-++++... ..+++.+||||+.
T Consensus 244 di~wlr~~w~~-plilKGI~~~eDA~~A~~~G~dgIiV-S-NHGGRQLD~apa~i~~LpeI~~aV~-~~~~V~~DgGIRr 319 (383)
T cd03332 244 DLAFLREWTDL-PIVLKGILHPDDARRAVEAGVDGVVV-S-NHGGRQVDGSIAALDALPEIVEAVG-DRLTVLFDSGVRT 319 (383)
T ss_pred HHHHHHHHCCC-CEEECCCCCHHHHHHHHHCCCCEEEE-E-CCCCCCCCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCC
T ss_conf 99999987699-85323568999999999759988998-0-7863446788327899999999847-9984999799786
Q ss_pred -HHHHHHHHCCCCEEEECH-HHHC-CCCHHHHHHHHHHHHHHH
Q ss_conf -899999967998999742-6637-899899999999999978
Q gi|254780975|r 181 -RNIKSLVQAGADLLVVGS-SFFN-QKGEISYAKRLNDLKKSA 220 (224)
Q Consensus 181 -~~i~~l~~~Gad~~V~Gs-aif~-~~d~~~~~~~l~~l~~~a 220 (224)
..+-+....||+.+-+|. .+|. .-...+-.++..++.+.+
T Consensus 320 G~DV~KAlALGA~~V~iGRp~l~glaa~G~~GV~~~l~iL~~E 362 (383)
T cd03332 320 GADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAE 362 (383)
T ss_pred HHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 7999999976999898778999987723199999999999999
No 324
>PRK12999 pyruvate carboxylase; Reviewed
Probab=85.60 E-value=3 Score=21.87 Aligned_cols=143 Identities=17% Similarity=0.228 Sum_probs=78.9
Q ss_pred CHHHHHHHHH-CCCCEEEEEEE-------EEECCH----HHHHHCCCCCCEEEEECCCCC---CHHHHHHHHHHCCCEEE
Q ss_conf 7899998641-25641685678-------851203----367640477607999706642---15899986776498259
Q gi|254780975|r 50 GADVIRSLRS-YSDSVFDCHLM-------ISSIDS----HINIIADAGCDIITFHPESSP---HIRRSLRTIHAMGKKTG 114 (224)
Q Consensus 50 ~~~~i~~i~~-~t~~~~dvHLM-------v~~P~~----~i~~~~~~g~d~i~~H~E~~~---~~~~~i~~i~~~g~k~G 114 (224)
+++.++.+|+ .++.++--=|= ...|.+ |+++..+.|.|.+-+- .+.+ ++...++..++.|..+-
T Consensus 594 Pw~Rl~~lr~~~pn~~~QmLlRg~N~vGY~~Ypdnvv~~fv~~a~~~GiDvfRiF-D~LN~~~nm~~~i~~v~~~g~~~e 672 (1147)
T PRK12999 594 PWERLAELREAMPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIF-DSLNWVENMRVAIDAVRETGKVAE 672 (1147)
T ss_pred HHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE-CCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 2899999998677734665312244457667973799999999998398911673-134466778999999997098899
Q ss_pred EEEE-------CCCCHHHHHHHHHHCCEEEEE-----EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE----EECCC
Q ss_conf 9852-------333447899886201402899-----8306776533220135778998654313865269----81589
Q gi|254780975|r 115 VAIN-------PETPVAILEDVIDEIDMILIM-----TVNPGFGGQQLIESTIPKIRQAKALIGKRSISLE----VDGGV 178 (224)
Q Consensus 115 iai~-------p~T~~~~i~~~l~~~D~vliM-----~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~----vDGGv 178 (224)
-+|+ |..|...+++|++....+.=| ++.- -+|---=..+.+.|+.||+- .++.|. --.|.
T Consensus 673 ~aicyTGdi~dp~~~~~~l~yy~~~a~~l~~~G~~~l~IKD-MAGLl~P~aa~~LV~aLk~~---~~lPIhlHtHdTsG~ 748 (1147)
T PRK12999 673 AAICYTGDILDPARAKYDLDYYVDLAKELEAAGAHILAIKD-MAGLLKPAAAYKLVSALKEE---VDLPIHLHTHDTSGN 748 (1147)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC-CCCCCCHHHHHHHHHHHHHH---CCCCEEEECCCCCCH
T ss_conf 99874257778788876699999999999976898899714-45468879999999999861---698459843678855
Q ss_pred CHHHHHHHHHCCCCEEEEC
Q ss_conf 9889999996799899974
Q gi|254780975|r 179 TSRNIKSLVQAGADLLVVG 197 (224)
Q Consensus 179 n~~~i~~l~~~Gad~~V~G 197 (224)
..-++-...+||||++=..
T Consensus 749 ~~at~laA~eAGvDiVD~A 767 (1147)
T PRK12999 749 GLATYLAAAEAGVDIVDVA 767 (1147)
T ss_pred HHHHHHHHHHCCCCEEECC
T ss_conf 8999999998599989635
No 325
>pfam00224 PK Pyruvate kinase, barrel domain. This domain of the is actually a small beta-barrel domain nested within a larger TIM barrel. The active site is found in a cleft between the two domains.
Probab=85.55 E-value=3.1 Score=21.85 Aligned_cols=147 Identities=10% Similarity=0.090 Sum_probs=92.1
Q ss_pred EEEECCHHHHHHCCCCCCEEEEEC-CCCCCHHHHHHHHHHCCCEEEEEEECCCC--HHHHHHHHHHCCEEEE----EEEE
Q ss_conf 885120336764047760799970-66421589998677649825998523334--4789988620140289----9830
Q gi|254780975|r 70 MISSIDSHINIIADAGCDIITFHP-ESSPHIRRSLRTIHAMGKKTGVAINPETP--VAILEDVIDEIDMILI----MTVN 142 (224)
Q Consensus 70 Mv~~P~~~i~~~~~~g~d~i~~H~-E~~~~~~~~i~~i~~~g~k~Giai~p~T~--~~~i~~~l~~~D~vli----M~V~ 142 (224)
+++.=.+.++...+.|+|+|.+-+ .+.+++..+-+.+++.|..+.|.-.-+|+ ++.+..++...|.|++ |+++
T Consensus 174 lTekD~~di~~a~~~~vD~ialSFVrsa~Di~~lr~~l~~~~~~~~IIaKIE~~~al~Nl~eIi~~sDgImIARGDLg~e 253 (348)
T pfam00224 174 LSEKDKADLRFGVKQGVDMIFASFVRTASDVLEVREVLGEAGKDIKIIAKIENQEGVNNFDEILEASDGIMVARGDLGIE 253 (348)
T ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEECCCCCCC
T ss_conf 88767999999997799999987889999999999999973887605998447898867888998588899844764455
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE---------ECCCC----HHHHHHHHHCCCCEEEECHHHHCCCCHHHH
Q ss_conf 67765332201357789986543138652698---------15899----889999996799899974266378998999
Q gi|254780975|r 143 PGFGGQQLIESTIPKIRQAKALIGKRSISLEV---------DGGVT----SRNIKSLVQAGADLLVVGSSFFNQKGEISY 209 (224)
Q Consensus 143 PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~v---------DGGvn----~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~ 209 (224)
.|+.--+ ..=.+ +-+...+.+-.+.| ....- ...+...+..|+|.+.+..---..+.|.++
T Consensus 254 i~~e~vp---~~Qk~---ii~~~~~~~kpvivATqmLeSM~~~~~PTRAEv~Dvanav~dGad~vmLs~ETa~G~~P~~~ 327 (348)
T pfam00224 254 IPAEEVF---LAQKM---LIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGNYPVEA 327 (348)
T ss_pred CCHHHHH---HHHHH---HHHHHHHCCCCEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHH
T ss_conf 8988989---99999---99999985992999827577651499985699999999998388889977402178799999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999997862
Q gi|254780975|r 210 AKRLNDLKKSALA 222 (224)
Q Consensus 210 ~~~l~~l~~~a~a 222 (224)
.+.+.+....++.
T Consensus 328 v~~l~~I~~~~E~ 340 (348)
T pfam00224 328 VKMMARICLEAEK 340 (348)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999871
No 326
>pfam04476 DUF556 Protein of unknown function (DUF556). Family of uncharacterized, hypothetical prokaryotic proteins.
Probab=85.35 E-value=3.1 Score=21.79 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCEECCCC-CC---CHHHHHHHHHCC--CCEEEEEEEE--EECCHH---HHHHCCCCC
Q ss_conf 999999999965998999973426345843-41---789999864125--6416856788--512033---676404776
Q gi|254780975|r 18 RLGEEISNITKAGAKQIHFDVMDGCFVPNI-SF---GADVIRSLRSYS--DSVFDCHLMI--SSIDSH---INIIADAGC 86 (224)
Q Consensus 18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~-~~---~~~~i~~i~~~t--~~~~dvHLMv--~~P~~~---i~~~~~~g~ 86 (224)
+.++.. ...++|+|.+ |+-+ |+- ++ .|+.+++++... +.|+..-+=- .+|... .-.....|+
T Consensus 9 n~~EA~-~a~~~GaDII--DvKn----P~~GaLGa~~p~vi~~i~~~v~~~k~vSatiGD~p~~p~~is~aa~~~a~~Gv 81 (235)
T pfam04476 9 SVEEAL-EAIEGGADII--DVKN----PAEGSLGANFPWVIREIRELTPKDKLVSATVGDVPYKPGTVSLAALGAAVSGA 81 (235)
T ss_pred CHHHHH-HHHHCCCCEE--EECC----CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCC
T ss_conf 999999-9986799989--8279----88888889999999999998567871689840788995167899987550389
Q ss_pred CEEEEECC-------CCCCHHHHHHHHHHCCCEEEE--EEECCC------CHHHHHHHHHHCCEEEEEEEECCCCCCC-C
Q ss_conf 07999706-------642158999867764982599--852333------4478998862014028998306776533-2
Q gi|254780975|r 87 DIITFHPE-------SSPHIRRSLRTIHAMGKKTGV--AINPET------PVAILEDVIDEIDMILIMTVNPGFGGQQ-L 150 (224)
Q Consensus 87 d~i~~H~E-------~~~~~~~~i~~i~~~g~k~Gi--ai~p~T------~~~~i~~~l~~~D~vliM~V~PG~~Gq~-f 150 (224)
|||=+=.= +.+.+..+...++......-+ +.-.+. +.-.+...+...-+=-+|--+-+..|+. |
T Consensus 82 DyVKVGl~~~~~~~~~~e~~~~~~~av~~~~~~~~vVav~~AD~~~~~~~~p~~i~~~a~~~G~~gvMiDT~~K~g~sl~ 161 (235)
T pfam04476 82 DYIKVGLYGVKNYDEAVEVMKNVVRAVKDFDSSKIVVAAGYADAYRIGAVEPLDVPEIAADAGADIAMLDTAIKDGTTLF 161 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHH
T ss_conf 98999437888679999999999999872278866999960103331388835679999975997899874667897666
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 2013577899865431386526981589988999999679989997426637899
Q gi|254780975|r 151 IESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 151 ~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
.--..+.++.+.+.....+..+..-|+++.+.++.+...++|.+=.=|++-...|
T Consensus 162 d~~~~~~L~~fv~~a~~~gl~~gLAGSL~~~di~~l~~l~pd~~G~RgavC~ggd 216 (235)
T pfam04476 162 DHMKIEDLESFVKLARDNGLKVALAGSISWEHIEPLKEIGTDIVGVRGAVCEGGD 216 (235)
T ss_pred HHCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHCCCCC
T ss_conf 6499999999999999759839984578888889998649998997455357998
No 327
>pfam01791 DeoC DeoC/LacD family aldolase. This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function. The family also includes tagatose 1,6-diphosphate aldolase (EC:4.1.2.40) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=84.45 E-value=3.4 Score=21.54 Aligned_cols=168 Identities=15% Similarity=0.191 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHC---CCCEEEEEE--EEEE-CCH-------HHHHHC
Q ss_conf 899999999999659989999734263458434178999986412---564168567--8851-203-------367640
Q gi|254780975|r 16 FSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY---SDSVFDCHL--MISS-IDS-------HINIIA 82 (224)
Q Consensus 16 ~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~---t~~~~dvHL--Mv~~-P~~-------~i~~~~ 82 (224)
+.++++-++++.++|++-+-+ .|..++..++. ++...=+++ -... +.+ =++...
T Consensus 18 ~~di~~l~~~a~~~g~~avcv-------------~p~~v~~~~~~l~~~~v~~vv~fp~g~~~~~~k~~~~~~~ev~~Ai 84 (231)
T pfam01791 18 SADIKALVAEALEPGASAVCV-------------NPGYVALAARLLGKVDIALVIGFPAGTYLTPVKGRDVLVAEAEEAI 84 (231)
T ss_pred HHHHHHHHHHHHHHCCCEEEE-------------CHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 689999999999879998998-------------7899999999865798369997479887765543100288799999
Q ss_pred CCCCCEEEEECCC-----------CCCHHHHHHHHHHCCCEEEEEEECCCCH-------HHHHH---HHH--HCCEEEEE
Q ss_conf 4776079997066-----------4215899986776498259985233344-------78998---862--01402899
Q gi|254780975|r 83 DAGCDIITFHPES-----------SPHIRRSLRTIHAMGKKTGVAINPETPV-------AILED---VID--EIDMILIM 139 (224)
Q Consensus 83 ~~g~d~i~~H~E~-----------~~~~~~~i~~i~~~g~k~Giai~p~T~~-------~~i~~---~l~--~~D~vliM 139 (224)
+.|+|-|-+...- ..++.++.+.++..+.++-+-.-|.++- +.+.. +.- -.|+|=.
T Consensus 85 ~~GAdeid~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~~lkvIiE~~~~~~~~~~~~~~~~i~~a~ria~e~GaD~vKt- 163 (231)
T pfam01791 85 ALGADEVDMVVNIGADGSEDEEQVLAEIAAVKEACHGEGLKVILEAYLRGEEIKDKVDPHLVAKATRVGAEAGADFVKT- 163 (231)
T ss_pred HCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHCCCCCHHHHHHHHHHHHHHCCCEEEE-
T ss_conf 8799889999724657895599999999999986310487089998515721003268999999999999959998981-
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-------HHHHHHHHHCCCCE--EEECHHHHC
Q ss_conf 8306776533220135778998654313865269815899-------88999999679989--997426637
Q gi|254780975|r 140 TVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-------SRNIKSLVQAGADL--LVVGSSFFN 202 (224)
Q Consensus 140 ~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-------~~~i~~l~~~Gad~--~V~Gsaif~ 202 (224)
..||+. ...+.+.++-+++......+.+-+-||++ .+.+..+.++||++ ...|..||.
T Consensus 164 --stg~~~---~gat~~~v~~~~~~~~~~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGA~~~G~s~Gr~i~q 230 (231)
T pfam01791 164 --STGFGE---RGATEEDVQIFKEVVGGAPPGVKASGGIKEKDFLRTVEDAIALIEAGADRIGVSAGRAIWQ 230 (231)
T ss_pred --CCCCCC---CCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf --578788---8778889999999856878748993386864378999999999986998120999899876
No 328
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=84.11 E-value=3.5 Score=21.44 Aligned_cols=121 Identities=19% Similarity=0.305 Sum_probs=73.6
Q ss_pred CCCCCCEEEEECCC-----------CC---------------CHHHHHHHHHHC-C--CEEEEEEECCC------CHHHH
Q ss_conf 04776079997066-----------42---------------158999867764-9--82599852333------44789
Q gi|254780975|r 82 ADAGCDIITFHPES-----------SP---------------HIRRSLRTIHAM-G--KKTGVAINPET------PVAIL 126 (224)
Q Consensus 82 ~~~g~d~i~~H~E~-----------~~---------------~~~~~i~~i~~~-g--~k~Giai~p~T------~~~~i 126 (224)
.++|.|-|-+|.-+ ++ -+.++++.+|+. | .-+|+=+++.. .++..
T Consensus 164 ~~AGfDGVEIH~ahGYLl~qFLsp~~N~RtDeYGGs~enR~Rf~~Eii~aVr~~vg~d~~vgvRis~~d~~~~g~~~~e~ 243 (336)
T cd02932 164 VEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDS 243 (336)
T ss_pred HHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH
T ss_conf 98399999863137479998369411677786799789998899999999999839988706896452357899899999
Q ss_pred ---HHHHHH--CCEEEEEEE--ECCC---CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCC-CCEE
Q ss_conf ---988620--140289983--0677---653322013577899865431386526981589-988999999679-9899
Q gi|254780975|r 127 ---EDVIDE--IDMILIMTV--NPGF---GGQQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAG-ADLL 194 (224)
Q Consensus 127 ---~~~l~~--~D~vliM~V--~PG~---~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~G-ad~~ 194 (224)
.+.|.. +|++.+-+- .+.. .+..|. ++-.+.+|+ ..++.+.+-||+ +.+.+.++++.| +|.+
T Consensus 244 ~~~a~~l~~~gvd~i~vs~G~~~~~~~~~~~~~~~---~~~a~~ik~---~~~ipvi~~G~i~~p~~ae~~l~~G~~DlV 317 (336)
T cd02932 244 VELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQ---VPFAERIRQ---EAGIPVIAVGLITDPEQAEAILESGRADLV 317 (336)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC---HHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHCCCCEEH
T ss_conf 99999999759978995589877666677786426---799999998---789839997998999999999987994006
Q ss_pred EECHHHHCCCCHHH
Q ss_conf 97426637899899
Q gi|254780975|r 195 VVGSSFFNQKGEIS 208 (224)
Q Consensus 195 V~Gsaif~~~d~~~ 208 (224)
..|.++..+||...
T Consensus 318 ~~gR~~iadPdlp~ 331 (336)
T cd02932 318 ALGRELLRNPYWPL 331 (336)
T ss_pred HHHHHHHHCCCHHH
T ss_conf 86799997933999
No 329
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=83.81 E-value=3.4 Score=21.52 Aligned_cols=198 Identities=14% Similarity=0.104 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECC--EECCCCCCCHHHHHHHHHC-CCCEEEEEEEEE-----------EC--------
Q ss_conf 9999999999965998999973426--3458434178999986412-564168567885-----------12--------
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDG--CFVPNISFGADVIRSLRSY-SDSVFDCHLMIS-----------SI-------- 74 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg--~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~-----------~P-------- 74 (224)
+.+++.++.+.++|+|++-+=+ |. .+.+++.|+.+.++.||+- .+.-+.+|=|+- +|
T Consensus 21 ~sw~e~~~~ak~~Gfd~iElsi-De~d~~~~rL~w~~~~~~~ir~~~~~~gi~i~s~cls~~~~~Pl~S~D~~~R~~~~e 99 (283)
T PRK13209 21 ECWLEKLRIAKTAGFDFVEMSV-DETDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQGLE 99 (283)
T ss_pred CCHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999999999985998799842-685310035899999999999999981998603305455579999979999999999
Q ss_pred --CHHHHHHCCCCCCEEEE-----ECCCC---------CCHHHHHHHHHHCCCEEEEEEECCCC----HHHHHHHHHHCC
Q ss_conf --03367640477607999-----70664---------21589998677649825998523334----478998862014
Q gi|254780975|r 75 --DSHINIIADAGCDIITF-----HPESS---------PHIRRSLRTIHAMGKKTGVAINPETP----VAILEDVIDEID 134 (224)
Q Consensus 75 --~~~i~~~~~~g~d~i~~-----H~E~~---------~~~~~~i~~i~~~g~k~Giai~p~T~----~~~i~~~l~~~D 134 (224)
.+.|+...+.|+..|.+ ++|.. +.+.+...+..+.|+..++=.- .|+ ++....+++.++
T Consensus 100 ~~~kaI~lA~~LGi~~I~lag~dv~~~~~~~e~~~~f~e~L~~~~~~A~~~gV~L~iE~~-~~~f~~t~~~~~~~i~~v~ 178 (283)
T PRK13209 100 IMRKAIQLAQDLGIRVIQLAGYDVYYEEANNETRRRFIDGLKESVEMASRYSVTLAFEIM-DTPFMGSISKALGYAHYLN 178 (283)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC-CHHHHCCHHHHHHHHHHCC
T ss_conf 999999999980999899688766788785999999999999999999985998999425-5343215999999999669
Q ss_pred EEEEE-EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE---------EE-EECCCCH-HHHHHHHHCCCCE-EEECHHHH
Q ss_conf 02899-83067765332201357789986543138652---------69-8158998-8999999679989-99742663
Q gi|254780975|r 135 MILIM-TVNPGFGGQQLIESTIPKIRQAKALIGKRSIS---------LE-VDGGVTS-RNIKSLVQAGADL-LVVGSSFF 201 (224)
Q Consensus 135 ~vliM-~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~---------I~-vDGGvn~-~~i~~l~~~Gad~-~V~Gsaif 201 (224)
.-.+. ..++|.... +.....+-++..+..+-+-.++ +- =.|.|+. +-+..|.+.|-+. ++.--.==
T Consensus 179 sP~l~v~~D~gn~~~-~~~d~~~~i~~~~~~I~~vH~kD~~~g~~~~vp~G~G~vdf~~vf~aLk~~gY~G~~~iE~w~~ 257 (283)
T PRK13209 179 SPWFQLYPDIGNLSA-WDNDVQMELQAGIGHIVAFHVKDTKPGVFKNVPFGEGVVDFERAFKTLKQSGYCGPYLIEMWSE 257 (283)
T ss_pred CCCEEEEECHHHHHH-CCCCHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 972899944577987-5699999999724456898531477997675789888508899999999979976289998418
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 7899899999999999
Q gi|254780975|r 202 NQKGEISYAKRLNDLK 217 (224)
Q Consensus 202 ~~~d~~~~~~~l~~l~ 217 (224)
.++|+.+.++.-++..
T Consensus 258 ~~~~~~~~i~~a~~f~ 273 (283)
T PRK13209 258 TAEDPAAEVAKARDFV 273 (283)
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 9957899999999999
No 330
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=83.56 E-value=2.5 Score=22.44 Aligned_cols=181 Identities=14% Similarity=0.189 Sum_probs=105.7
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCC---CCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCC
Q ss_conf 7063258899999999999659989999734263458434---1789999864125641685678851203367640477
Q gi|254780975|r 9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNIS---FGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAG 85 (224)
Q Consensus 9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~---~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g 85 (224)
|.+=+.|.--+..-++..++.+..- =+.+-.|.+ ..++ +....++.+.+....|+-.||==-.-...+.+..++|
T Consensus 21 pAfN~~nlE~~~AileaA~e~~sPv-Iiq~S~g~~-~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~G 98 (286)
T COG0191 21 PAFNINNLETLQAILEAAEEEKSPV-IIQFSEGAA-KYAGGADSLAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRAG 98 (286)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCE-EEEECCCHH-HHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCC
T ss_conf 5663368999999999999858998-999461188-77052889999999999977998899777899999999997568
Q ss_pred CCEEEEECCCC---CC---HHHHHHHHHHCCCEEEEEE----E------------CCCCHHHHHHHHHH--CCEEEEEEE
Q ss_conf 60799970664---21---5899986776498259985----2------------33344789988620--140289983
Q gi|254780975|r 86 CDIITFHPESS---PH---IRRSLRTIHAMGKKTGVAI----N------------PETPVAILEDVIDE--IDMILIMTV 141 (224)
Q Consensus 86 ~d~i~~H~E~~---~~---~~~~i~~i~~~g~k~Giai----~------------p~T~~~~i~~~l~~--~D~vliM~V 141 (224)
-..+-+-.-.. ++ -.+.+++++..|+.+-.=| + ..|+++.-..+.+. +|.+=+
T Consensus 99 FsSvMiDgS~~p~eENi~~tkevv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~--- 175 (286)
T COG0191 99 FSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAA--- 175 (286)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCEEEE---
T ss_conf 82587538757788899999999999998298189985133575677535666655079999999986128665611---
Q ss_pred ECCCC------CCC-CCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 06776------533-220135778998654313865269815--899889999996799899974266
Q gi|254780975|r 142 NPGFG------GQQ-LIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSF 200 (224)
Q Consensus 142 ~PG~~------Gq~-f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsai 200 (224)
--|.. |.+ +.+..+.+|++.-. +++-.-| |+..+.+++.++.|+.-+-..|-+
T Consensus 176 aiGn~HG~Yk~~~p~L~f~~L~~i~~~~~------~PlVlHGgSGip~eeI~~aI~~GV~KvNi~Td~ 237 (286)
T COG0191 176 AIGNVHGVYKPGNPKLDFDRLKEIQEAVS------LPLVLHGGSGIPDEEIREAIKLGVAKVNIDTDL 237 (286)
T ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHHC------CCEEEECCCCCCHHHHHHHHHHCCEEEEECCHH
T ss_conf 00356667889999889799999999858------987976799999999999997295588547277
No 331
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=83.38 E-value=3.8 Score=21.25 Aligned_cols=153 Identities=20% Similarity=0.285 Sum_probs=79.1
Q ss_pred CHHHHCCCH-HHHHHHHHHHHHCCCCEEEEEEEC-CEECCCCCCCHH----HHHHHHHC-----CCCEEEEEEEEEECCH
Q ss_conf 170632588-999999999996599899997342-634584341789----99986412-----5641685678851203
Q gi|254780975|r 8 VPSILAADF-SRLGEEISNITKAGAKQIHFDVMD-GCFVPNISFGAD----VIRSLRSY-----SDSVFDCHLMISSIDS 76 (224)
Q Consensus 8 spSil~~d~-~~l~~~i~~l~~~~~d~iHiDImD-g~fvpn~~~~~~----~i~~i~~~-----t~~~~dvHLMv~~P~~ 76 (224)
+..-++.|. .-+.++++.+.++|+.++++|=-- +...|... +++ .+..++.. .+..+..|+.-.+...
T Consensus 148 ~~~el~~~iA~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~d~~i~~HiCy~e~~~ 226 (330)
T COG0620 148 SREELAKDIALALRDEVKDLEDAGIKIIQIDEPALREGLPLRR-DDDYLEWAVEAINLAAAGVGADTQIHLHICYSEFND 226 (330)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
T ss_conf 9999999999999999999997599299626666643775446-647899999999999853788838999986774554
Q ss_pred HHHHHCCCCCCEEEEECCCC-CCHHHHHHHHHHCCCEEEEEE-E---CCCC-HHHHHHH----HHHCCEEEEEEEEC--C
Q ss_conf 36764047760799970664-215899986776498259985-2---3334-4789988----62014028998306--7
Q gi|254780975|r 77 HINIIADAGCDIITFHPESS-PHIRRSLRTIHAMGKKTGVAI-N---PETP-VAILEDV----IDEIDMILIMTVNP--G 144 (224)
Q Consensus 77 ~i~~~~~~g~d~i~~H~E~~-~~~~~~i~~i~~~g~k~Giai-~---p~T~-~~~i~~~----l~~~D~vliM~V~P--G 144 (224)
..+.+....+|.+.+..-.. ....+.+...+ .+..+|+.+ + |.-+ .+.+... +..+. .-..-|+| |
T Consensus 227 ~~~~i~~ld~dv~~~e~~~s~~~~~~~~~~~~-~~~~Ig~Gv~d~~~~~ve~~eei~~~i~k~~~~~~-~e~~~vnPDCG 304 (330)
T COG0620 227 IPDAIEALDADVIDIETSRSRMELLEVLEEVK-YDKEIGLGVVDIHSPKVESVEEIAARIRKALERVP-PERLYVNPDCG 304 (330)
T ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHCC-CCCEEECCEEECCCCCCCCHHHHHHHHHHHHHHCC-CCCEEECCCCC
T ss_conf 67788644760785320345512678987405-67724514686578887988999999999997387-00099779866
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q ss_conf 76533220135778998654
Q gi|254780975|r 145 FGGQQLIESTIPKIRQAKAL 164 (224)
Q Consensus 145 ~~Gq~f~~~~l~kI~~l~~~ 164 (224)
+...+ .+.+..|++-+.+.
T Consensus 305 l~~~~-~~~a~~kL~nmv~a 323 (330)
T COG0620 305 LKTLP-REIAEAKLENMVKA 323 (330)
T ss_pred CCCCC-HHHHHHHHHHHHHH
T ss_conf 55574-79999999999999
No 332
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=82.92 E-value=4 Score=21.14 Aligned_cols=124 Identities=19% Similarity=0.311 Sum_probs=83.0
Q ss_pred CCCEEEEECCC-----CCCHHHHHHHHHHCCCEEEEEEECCCCHH-HHHHHHHHCCEEEEEEE-ECCCCCCCCCC-HHHH
Q ss_conf 76079997066-----42158999867764982599852333447-89988620140289983-06776533220-1357
Q gi|254780975|r 85 GCDIITFHPES-----SPHIRRSLRTIHAMGKKTGVAINPETPVA-ILEDVIDEIDMILIMTV-NPGFGGQQLIE-STIP 156 (224)
Q Consensus 85 g~d~i~~H~E~-----~~~~~~~i~~i~~~g~k~Giai~p~T~~~-~i~~~l~~~D~vliM~V-~PG~~Gq~f~~-~~l~ 156 (224)
+.++|-+..=. .+|+.++++..... ++-|...-|+|.-+ .+.+-|.++--.-+|-- -|=-+||.... ..+.
T Consensus 97 ~t~wiKlEVi~d~~tLlPD~~etl~Aae~L-v~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~ 175 (262)
T COG2022 97 GTNWIKLEVIGDEKTLLPDPIETLKAAEQL-VKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLE 175 (262)
T ss_pred CCCEEEEEEECCCCCCCCCHHHHHHHHHHH-HHCCCEEEECCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 698489999368765488757899999999-8679888503688789999998649668633566566786757889999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
Q ss_conf 78998654313865269815899-889999996799899974266378998999999999
Q gi|254780975|r 157 KIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLND 215 (224)
Q Consensus 157 kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~ 215 (224)
- ++.+.++.+.||-||- ...+...-+.|+|-+-+-++|-...||...++.+.-
T Consensus 176 i------iie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~ 229 (262)
T COG2022 176 I------IIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFAL 229 (262)
T ss_pred H------HHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEHHHHHHCCCCHHHHHHHHHH
T ss_conf 9------99738998898679897668899986055432325676603786999999999
No 333
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=82.88 E-value=4 Score=21.13 Aligned_cols=150 Identities=17% Similarity=0.352 Sum_probs=82.5
Q ss_pred CCHHHHHHHH-HC---CCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHH-HHHHCCC--EEEEEEECC-
Q ss_conf 1789999864-12---56416856788512033676404776079997066421589998-6776498--259985233-
Q gi|254780975|r 49 FGADVIRSLR-SY---SDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLR-TIHAMGK--KTGVAINPE- 120 (224)
Q Consensus 49 ~~~~~i~~i~-~~---t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~-~i~~~g~--k~Giai~p~- 120 (224)
||-..+.++. ++ ++..+.-|+.-.=..+-+..++.. +|+ +|.=-...+.+.++ ...+.+. ++-|=+|.+
T Consensus 51 fGENrvQE~~~K~~~l~~~~i~wHfIG~LQsNKvk~i~~~-~~~--IhSvDs~kla~~l~~~~~~~~~~~~vlIQVNis~ 127 (222)
T cd00635 51 FGENRVQEALDKAEELPDPDIEWHFIGHLQTNKVKYAVRL-FDL--IHSVDSLKLAEELNKRAEKEGRVLDVLVQVNIGG 127 (222)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCC-CCE--EEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 3677089999868754888825999667623669987500-458--8877889999999999997299971899981588
Q ss_pred ------CCHHHHHHHHH------HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC-CEE-EEECCCCHHHHHHH
Q ss_conf ------34478998862------01402899830677653322013577899865431386-526-98158998899999
Q gi|254780975|r 121 ------TPVAILEDVID------EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRS-ISL-EVDGGVTSRNIKSL 186 (224)
Q Consensus 121 ------T~~~~i~~~l~------~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~-~~I-~vDGGvn~~~i~~l 186 (224)
.+++.+..++. .+...-+||+-|--.-..-....+.+++++++-+.... ..+ +.==|.+ ...+..
T Consensus 128 e~~K~G~~~~e~~~~~~~~~~~~~l~~~GLM~i~p~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~~LSMGMS-~Dy~~A 206 (222)
T cd00635 128 EESKSGVAPEELEELLEEIAALPNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVNLKELSMGMS-GDFEIA 206 (222)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCH-HHHHHH
T ss_conf 7555688999999999999966899751036536999997999999999999999987645999398898141-459999
Q ss_pred HHCCCCEEEECHHHHC
Q ss_conf 9679989997426637
Q gi|254780975|r 187 VQAGADLLVVGSSFFN 202 (224)
Q Consensus 187 ~~~Gad~~V~Gsaif~ 202 (224)
+++|++.+=+||+||+
T Consensus 207 I~~GST~VRIGs~iFG 222 (222)
T cd00635 207 IEEGATLVRIGTAIFG 222 (222)
T ss_pred HHCCCCEEEECCHHCC
T ss_conf 9879997981632109
No 334
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=82.51 E-value=4.1 Score=21.04 Aligned_cols=177 Identities=15% Similarity=0.200 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEE
Q ss_conf 25889999999999965998999973426345843417899998641256416856788512033676404776079997
Q gi|254780975|r 13 AADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFH 92 (224)
Q Consensus 13 ~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H 92 (224)
+.|..++.+.+ ...|++++-+ .|=.+.-..+-+.+.++.+...-+..+|+-. .+-+.+-..+. -+.+..+-
T Consensus 35 s~dP~eia~~l---r~rgar~vYi--ADLdaI~g~g~n~d~i~~l~~~~~~ivD~Gv--~dL~s~~~~l~--~~~~~vv~ 105 (229)
T COG1411 35 SDDPLEIAEAL---RERGARFVYI--ADLDAILGGGDNADTIRELSSLEKVIVDVGV--RDLESHAHRLI--PAETAVVG 105 (229)
T ss_pred CCCHHHHHHHH---HHCCCCEEEE--EEHHHHHCCCCCHHHHHHHHHHHHHEEECCC--CCCCCHHHHCC--CCCCEEEC
T ss_conf 99869999997---6544746886--1037886689748999998765435001133--33647888607--77643531
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEEEE--------CCCCHHHHHHHHHHCCE-EEEEEEECCCCC-CC-CCCHHHHHHHHH
Q ss_conf 06642158999867764982599852--------33344789988620140-289983067765-33-220135778998
Q gi|254780975|r 93 PESSPHIRRSLRTIHAMGKKTGVAIN--------PETPVAILEDVIDEIDM-ILIMTVNPGFGG-QQ-LIESTIPKIRQA 161 (224)
Q Consensus 93 ~E~~~~~~~~i~~i~~~g~k~Giai~--------p~T~~~~i~~~l~~~D~-vliM~V~PG~~G-q~-f~~~~l~kI~~l 161 (224)
.|+.++.+ .-++.-+-+++-++ ++..++.++.+...-|. ++++-+ |--| |. |..+.+.|+.++
T Consensus 106 TEt~e~~e----~~e~~r~vvslD~k~~~Ll~~~~ed~le~Vk~l~~~~~~~lIvLDi--~aVGt~~G~~~E~l~~~~~~ 179 (229)
T COG1411 106 TETLEDTE----EDEEGRIVVSLDVKGGELLGPWLEDFLETVKDLNYRRDPGLIVLDI--GAVGTKSGPDYELLTKVLEL 179 (229)
T ss_pred CCHHHHHH----HHHCCCEEEEEECCCCEECCCCCHHHHHHHHHHHCCCCCCEEEEEC--CCCCCCCCCCHHHHHHHHHH
T ss_conf 12033556----6330666999964788423777104899999875257888499975--54334669999999999873
Q ss_pred HHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHH
Q ss_conf 654313865269815899-8899999967998999742663789989999
Q gi|254780975|r 162 KALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYA 210 (224)
Q Consensus 162 ~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~ 210 (224)
.+ -+..+-|||. .|....+...|++-+.+|+|+++...|.+..
T Consensus 180 s~------~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~vple~~ 223 (229)
T COG1411 180 SE------HPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEGVVPLEVE 223 (229)
T ss_pred CC------CCEEECCCCCCHHHHHHHHCCCCCEEEEHHHHHCCCCCHHHH
T ss_conf 13------753444875857778998617985465433565276738998
No 335
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=81.85 E-value=3.4 Score=21.57 Aligned_cols=16 Identities=13% Similarity=0.304 Sum_probs=9.8
Q ss_pred HHHHHHCCCCCCEEEE
Q ss_conf 3367640477607999
Q gi|254780975|r 76 SHINIIADAGCDIITF 91 (224)
Q Consensus 76 ~~i~~~~~~g~d~i~~ 91 (224)
.|+..-+++|||.|.+
T Consensus 181 ~yl~~Qi~aGAd~iqI 196 (335)
T cd00717 181 EYLKAQIEAGAQAVQI 196 (335)
T ss_pred HHHHHHHHHCCCEEEE
T ss_conf 9999999819987885
No 336
>PRK06801 hypothetical protein; Provisional
Probab=81.70 E-value=4.4 Score=20.85 Aligned_cols=185 Identities=16% Similarity=0.180 Sum_probs=108.6
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf 70632588999999999996599899997342634584341--7899998641256416856788512033676404776
Q gi|254780975|r 9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC 86 (224)
Q Consensus 9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~ 86 (224)
|++=+.|+..+.--++..++.+..-+ +-+-.+.+ +..++ =...++...+..+.|+-+||==-.-...+....++|-
T Consensus 21 ~AfNv~n~e~~~avi~AAee~~sPvI-lq~s~~~~-~~~~~~~~~~~~~~~a~~~~VPV~lHLDHg~~~e~i~~ai~~Gf 98 (286)
T PRK06801 21 GAFNVLDSHFLRALFAAAKQERSPFI-INIAEVHF-KYISLESLVEAVKFEAAHHDIPVVLNLDHGLHFEAVVRALRLGF 98 (286)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEE-EECCHHHH-HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99888999999999999999787989-98067577-56699999999999998779989998999999999999998299
Q ss_pred CEEEEECCCCC---C---HHHHHHHHHHCCCEE----EEE-------------EECCCCHHHHHHHHHH--CCEEEEEEE
Q ss_conf 07999706642---1---589998677649825----998-------------5233344789988620--140289983
Q gi|254780975|r 87 DIITFHPESSP---H---IRRSLRTIHAMGKKT----GVA-------------INPETPVAILEDVIDE--IDMILIMTV 141 (224)
Q Consensus 87 d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Gia-------------i~p~T~~~~i~~~l~~--~D~vliM~V 141 (224)
+.|-+-.-..+ + -.++.++++..|+.+ |-. -...|.++....+.+. +|.+ .|
T Consensus 99 ~SVM~DgS~l~~eeNi~~Tk~vve~ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~~T~peea~~Fv~~TgvD~L---Av 175 (286)
T PRK06801 99 SSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSNLFTDPAIARDFVDRTGIDAL---AV 175 (286)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE---EE
T ss_conf 879974998999999999999999998849859999631057667765576530026899999999998699899---75
Q ss_pred ECCCCCCCCCC---HHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 06776533220---135778998654313865269815--8998899999967998999742663
Q gi|254780975|r 142 NPGFGGQQLIE---STIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFF 201 (224)
Q Consensus 142 ~PG~~Gq~f~~---~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif 201 (224)
-.|..-..+.. =-+++++++++. .++++-.-| |+..+.++++++.|+.-+-.|+.+.
T Consensus 176 aiGn~HG~yk~~p~L~~~~L~~I~~~---~~vPLVLHGgSGi~~e~i~~ai~~Gv~KiNi~T~l~ 237 (286)
T PRK06801 176 AIGNAHGKYKGEPKLDFARLAAIHQQ---TGLPLVLHGGSGISDTDFRRAISLGIHKINFYTGMS 237 (286)
T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHH---CCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHH
T ss_conf 22545567689886799999999985---299989779999999999999977976998286899
No 337
>pfam01116 F_bP_aldolase Fructose-bisphosphate aldolase class-II.
Probab=81.31 E-value=4.5 Score=20.76 Aligned_cols=185 Identities=15% Similarity=0.197 Sum_probs=116.4
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf 70632588999999999996599899997342634584341--7899998641256416856788512033676404776
Q gi|254780975|r 9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC 86 (224)
Q Consensus 9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~ 86 (224)
|+.=+.|+..++--++..++.+..- =+.+-.+.. ...++ -...++.+.+..+.|+-+||==-.....+.+..++|.
T Consensus 19 ~afNv~~~e~~~avi~AAee~~sPv-Ilq~s~~~~-~~~g~~~~~~~~~~~a~~~~VPV~lHLDH~~~~e~~~~ai~~Gf 96 (283)
T pfam01116 19 PAFNVNNLETINAVLEAAEEANSPV-IIQVSPGAA-KYAGAEALAAMVRAAAEKYSVPVALHLDHGASFEGILEAIEAGF 96 (283)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCE-EEECCCCHH-HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCC
T ss_conf 9876798999999999999969999-999684467-55899999999999999779989996677799999999998199
Q ss_pred CEEEEECCCCC---C---HHHHHHHHHHCCCEE----EEEE------E------CCCCHHHHHHHHHH--CCEEEEEEEE
Q ss_conf 07999706642---1---589998677649825----9985------2------33344789988620--1402899830
Q gi|254780975|r 87 DIITFHPESSP---H---IRRSLRTIHAMGKKT----GVAI------N------PETPVAILEDVIDE--IDMILIMTVN 142 (224)
Q Consensus 87 d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Giai------~------p~T~~~~i~~~l~~--~D~vliM~V~ 142 (224)
+.|-+-.-..+ + -.++.++++..|+-+ |-.= . ..|.++....+++. +|. +.|-
T Consensus 97 tSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~---LAva 173 (283)
T pfam01116 97 SSVMIDGSHLPFEENIAITKEVVEYAHARGVSVEAELGRIGGEEDGVDNSEDEALYTDPEEAKEFVERTGVDS---LAVA 173 (283)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE---EEEE
T ss_conf 8698638979999999999999999987398489975003675667677763222589999999999869887---8764
Q ss_pred CCCCCCCCC---C-HHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 677653322---0-135778998654313865269815--8998899999967998999742663
Q gi|254780975|r 143 PGFGGQQLI---E-STIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFF 201 (224)
Q Consensus 143 PG~~Gq~f~---~-~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif 201 (224)
.|..-..+- | =-+++++++++.. ++++-.-| |+..+.++++.+.|+.-+-.|+.+.
T Consensus 174 iG~~HG~yk~~~p~L~~~~L~~I~~~~---~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 235 (283)
T pfam01116 174 IGNVHGVYKPLEPKLDFDRLKEIQAAV---DVPLVLHGGSGVPDEEIRKAIKLGVAKINIDTDLQ 235 (283)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHH
T ss_conf 365344468999866999999999873---99878658999999999999983966998575999
No 338
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=81.14 E-value=1.7 Score=23.47 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=64.4
Q ss_pred EEECCHHHHHHCC-CCCCEEEEECCCCCC-------------HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC--C
Q ss_conf 8512033676404-776079997066421-------------58999867764982599852333447899886201--4
Q gi|254780975|r 71 ISSIDSHINIIAD-AGCDIITFHPESSPH-------------IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEI--D 134 (224)
Q Consensus 71 v~~P~~~i~~~~~-~g~d~i~~H~E~~~~-------------~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~--D 134 (224)
.++|-.|..++++ .|+|+||+|.=++.. ++++++.. +--+-+|=+=||..+.+.+++-.+-+ +
T Consensus 149 medP~eWArk~Vk~fgadmvTiHlIsTdPki~D~p~~EAak~lEdvLqAV-dvPiiiGGSGnpeKDpeVlekaAEvaEGe 227 (403)
T COG2069 149 MEDPGEWARKCVKKFGADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAV-DVPIIIGGSGNPEKDPEVLEKAAEVAEGE 227 (403)
T ss_pred HHCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 52988999999998487659999613786556779899999999999754-86889668999764979999998761576
Q ss_pred EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCHHHHHHHHHCCC--CEEEEC
Q ss_conf 0289983067765332201357789986543138652-69815899889999996799--899974
Q gi|254780975|r 135 MILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS-LEVDGGVTSRNIKSLVQAGA--DLLVVG 197 (224)
Q Consensus 135 ~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~-I~vDGGvn~~~i~~l~~~Ga--d~~V~G 197 (224)
++|+-|.+-.- -++||.+...-+++.-+. -++|=..-.+-=+++.+.|. |.+|.-
T Consensus 228 RclLaSanldl--------Dy~~ia~AA~ky~H~VLswt~~D~N~qk~LNrkllk~gl~r~~IVMD 285 (403)
T COG2069 228 RCLLASANLDL--------DYERIAEAALKYDHVVLSWTQMDVNMQKTLNRKLLKRGLPRDRIVMD 285 (403)
T ss_pred EEEEECCCCCC--------CHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHEEEC
T ss_conf 47751155566--------79999999986495388862258278899999999746984336116
No 339
>TIGR00010 TIGR00010 hydrolase, TatD family; InterPro: IPR015991 Escherichia coli TatD (synonym MttC) has been shown experimentally to be a DNase . On the basis of operon structure, it was originally thought to be involved in the Sec-independent export of protein precursors bearing twin arginine signal peptides by the Tat system . This alternative membrane targeting and translocation system (Mtt), also called twin arginine translocase (Tat) (MttA1A2BC or TatABCD), has been shown to transport fully folded proteins to, or across, the membrane , . However, it was later determined that TatD is not required for this translocation process , . Furthermore, it was noted that no exact correlation exists between the ability of an organism to synthesise a TatD-like protein and whether that organism has a Tat protein transport pathway . Also, with the exception of Escherichia coli , the genetic linkage between TatD and other Tat genes (operon structure) is not maintained. Members of this group may be distantly related to a large 3D fold-based domain superfamily of metalloenzymes . The description of this fold superfamily was based on an analysis of conservation patterns in three dimensions, and the discovery that the same active-site architecture occurs in a large set of enzymes involved primarily in nucleotide metabolism. The group is thought to include urease, dihydroorotase, allantoinase, hydantoinase, AMP-, adenine- and cytosine- deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolase, formylmethanofuran dehydrogenase, and other enzymes ..
Probab=80.67 E-value=4.2 Score=20.97 Aligned_cols=130 Identities=13% Similarity=0.111 Sum_probs=86.5
Q ss_pred CCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEEC-CHHHHHHCC-----CCCCEEEEECCCCCCHHHHH
Q ss_conf 998999973426345843417899998641256416856788512-033676404-----77607999706642158999
Q gi|254780975|r 30 GAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSI-DSHINIIAD-----AGCDIITFHPESSPHIRRSL 103 (224)
Q Consensus 30 ~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P-~~~i~~~~~-----~g~d~i~~H~E~~~~~~~~i 103 (224)
|.||.|-+=-+|.=..+-.|..++ +|.+..++|+=||. -+- ++.++.+.+ .......+|+=+.. .+.-
T Consensus 101 GLDY~~~~~~~e~~~Q~e~F~~q~--~lA~~~~~P~iiH~--RdA~~d~~~iL~~~y~~~~~~~~g~~HCftg~--~E~a 174 (269)
T TIGR00010 101 GLDYYKADEKKERRRQKEVFRAQL--QLAEELNLPVIIHA--RDAEEDVLDILREYYAEKAPKVGGVLHCFTGD--AELA 174 (269)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH--HHHHHCCCCEEEEC--CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC--HHHH
T ss_conf 440430687521789999999999--99997199689978--84579999999999842787787579814888--8999
Q ss_pred HHHHHCC---CEEEE----EEECCCCHHHHHHHHHHCCEEEEEEE------EC--CCCCCC-CCCHHHHHHHHHHHHHH
Q ss_conf 8677649---82599----85233344789988620140289983------06--776533-22013577899865431
Q gi|254780975|r 104 RTIHAMG---KKTGV----AINPETPVAILEDVIDEIDMILIMTV------NP--GFGGQQ-LIESTIPKIRQAKALIG 166 (224)
Q Consensus 104 ~~i~~~g---~k~Gi----ai~p~T~~~~i~~~l~~~D~vliM~V------~P--G~~Gq~-f~~~~l~kI~~l~~~~~ 166 (224)
+++-+.| .-+++ ++....++-.+-+++| +|.+|+=|= .| |..++| |...+.+.|.++|..-.
T Consensus 175 ~~~ld~gd~~~yiSisG~vTFknA~~l~~~v~~iP-~e~LL~ETDSPyLaP~P~RGK~N~P~~v~~v~~~iAeik~~~~ 252 (269)
T TIGR00010 175 KKLLDLGDLLFYISISGIVTFKNAKSLREVVKKIP-LERLLVETDSPYLAPVPYRGKRNEPAFVRYVVEAIAEIKGIDL 252 (269)
T ss_pred HHHHCCCCEEEEEECCCCEEEECCHHHHHHHHHCC-CCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH
T ss_conf 99960698799997286022106267899997459-6432320167445788988985674059999999998838899
No 340
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=79.82 E-value=4.1 Score=21.04 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHCCC---CEEEEECCCCHHHHHHHHHCCC--CEEEECHHHHCCCC
Q ss_conf 577899865431386---5269815899889999996799--89997426637899
Q gi|254780975|r 155 IPKIRQAKALIGKRS---ISLEVDGGVTSRNIKSLVQAGA--DLLVVGSSFFNQKG 205 (224)
Q Consensus 155 l~kI~~l~~~~~~~~---~~I~vDGGvn~~~i~~l~~~Ga--d~~V~Gsaif~~~d 205 (224)
..-.++.|+.++..+ .+|.+-||+++..|..+.+.|+ |.+=+|+.+....+
T Consensus 262 ~~Ls~~~R~~LD~~G~~~~kI~~S~~LdE~~I~~L~~~ga~iD~fGVGT~LvT~~~ 317 (443)
T PRK12484 262 AELSKATRAILDTAGLEQVKIVASGGLDENRIAALLAAGAPIDGFGVGTRLGVSAD 317 (443)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCEECCCC
T ss_conf 99999999999867998867999699999999999987996358716763403899
No 341
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=79.74 E-value=5.1 Score=20.43 Aligned_cols=181 Identities=13% Similarity=0.187 Sum_probs=107.5
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCC
Q ss_conf 0632588999999999996599899997342634584341--78999986412564168567885120336764047760
Q gi|254780975|r 10 SILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCD 87 (224)
Q Consensus 10 Sil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d 87 (224)
+.=+.|+..++--++..++.+..-+ +-+.-+.. ...++ -...++.+.+..+.|+-+||==-.-...+....++|-+
T Consensus 22 AfNv~~~e~~~Avi~AAee~~sPvI-lq~~~~~~-~~~g~~~~~~~~~~~a~~~~VPV~lHLDH~~~~e~i~~ai~~Gft 99 (284)
T PRK09195 22 AFNIHNLETMQVVVETAAELHSPVI-IAGTPGTF-SYAGTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGVR 99 (284)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCEE-EECCHHHH-HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 8777889999999999999599989-99885166-447989999999999987799889966987999999999974998
Q ss_pred EEEEECCCCC---C---HHHHHHHHHHCCCEE----EEE--------E----ECCCCHHHHHHHHHH--CCEEEEEEEEC
Q ss_conf 7999706642---1---589998677649825----998--------5----233344789988620--14028998306
Q gi|254780975|r 88 IITFHPESSP---H---IRRSLRTIHAMGKKT----GVA--------I----NPETPVAILEDVIDE--IDMILIMTVNP 143 (224)
Q Consensus 88 ~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Gia--------i----~p~T~~~~i~~~l~~--~D~vliM~V~P 143 (224)
.|-+-.-+.+ + -.++.++++..|+.+ |-. . ...|.++....+.+. +|.+ .|-.
T Consensus 100 SVM~DgS~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~L---Avai 176 (284)
T PRK09195 100 SVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEKDALYTDPAQAREFVEATGIDSL---AVAI 176 (284)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE---EEEE
T ss_conf 6886389899999999999999999872881899740015657787766632356899999999997599889---8650
Q ss_pred CC-----CCCC-CCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 77-----6533-220135778998654313865269815--8998899999967998999742663
Q gi|254780975|r 144 GF-----GGQQ-LIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFF 201 (224)
Q Consensus 144 G~-----~Gq~-f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif 201 (224)
|. .|.+ ++ +++++++++. .++++-.-| |+..+.++++.+.|+.-+-.++.+.
T Consensus 177 Gt~HG~yk~~p~L~---~~~L~~I~~~---~~vPLVLHGgSG~~~e~i~~ai~~Gv~KiNi~T~l~ 236 (284)
T PRK09195 177 GTAHGMYKSAPKLD---FDRLENIRQW---VNIPLVLHGASGLPTKDIQQTIKLGICKVNVATELK 236 (284)
T ss_pred CCCCCCCCCCCCCC---HHHHHHHHHH---HCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHH
T ss_conf 65455558988459---9999999997---499989878999899999999984976998685899
No 342
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=79.59 E-value=5.2 Score=20.40 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=45.1
Q ss_pred CCCEEEEECCCCC-CHHHHHHHHHHCCCEEEEE-EECC--CCHHHHHHHHHHCCEEEEEEEECCCCCC
Q ss_conf 7607999706642-1589998677649825998-5233--3447899886201402899830677653
Q gi|254780975|r 85 GCDIITFHPESSP-HIRRSLRTIHAMGKKTGVA-INPE--TPVAILEDVIDEIDMILIMTVNPGFGGQ 148 (224)
Q Consensus 85 g~d~i~~H~E~~~-~~~~~i~~i~~~g~k~Gia-i~p~--T~~~~i~~~l~~~D~vliM~V~PG~~Gq 148 (224)
.+|++.+-+-++. ...+.++.+++.|.|+|+. +.-- -|.+.++.++...+.|++.=-| .||
T Consensus 273 dAdi~IV~~GS~~~~~~eAvd~Lr~~G~kvg~l~ir~l~PfP~~~i~~~l~~~k~ViVvE~N---~GQ 337 (377)
T PRK08659 273 DAEVVVVAYGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN---LGQ 337 (377)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCC---CHH
T ss_conf 99899999685578999999999964986889997220699989999998569989998077---568
No 343
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase family protein; InterPro: IPR005720 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This describes dihydroorotate dehydrogenases subfamily 1 that includes a number of uncharacterised proteins and a domain of dihydropyrimidine dehydrogenase.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0005737 cytoplasm.
Probab=79.21 E-value=4.1 Score=21.03 Aligned_cols=168 Identities=18% Similarity=0.343 Sum_probs=110.3
Q ss_pred CEEECHHHHCCCHHHHHHHHHHHHHCC--CCEEEEEEECCEECCC------CCC------CHHHHHHHHHCCCCEEEEEE
Q ss_conf 818817063258899999999999659--9899997342634584------341------78999986412564168567
Q gi|254780975|r 4 SIQIVPSILAADFSRLGEEISNITKAG--AKQIHFDVMDGCFVPN------ISF------GADVIRSLRSYSDSVFDCHL 69 (224)
Q Consensus 4 ~~~IspSil~~d~~~l~~~i~~l~~~~--~d~iHiDImDg~fvpn------~~~------~~~~i~~i~~~t~~~~dvHL 69 (224)
.++|.+|++=.+--++.+-.+.++++. +|.+-+=|- ||| ++| ..+.++++|.-++.|+=+=|
T Consensus 93 dvr~I~svyG~~~EEfa~va~~~e~A~~y~~~~ELN~S----CPhvK~G~G~~iG~dP~l~~~vv~avK~~~d~Pv~aKL 168 (308)
T TIGR01037 93 DVRLIASVYGESEEEFAEVAEKLEDADPYVDAYELNVS----CPHVKGGGGIEIGQDPELSADVVKAVKDKVDVPVFAKL 168 (308)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHEEEECCCC----CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 52899983188822589999987211344000010477----74434234655477877999999998300078657864
Q ss_pred E--EEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCC
Q ss_conf 8--85120336764047760799970664215899986776498259985233344789988620140289983067765
Q gi|254780975|r 70 M--ISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGG 147 (224)
Q Consensus 70 M--v~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~G 147 (224)
= |.|=.+...-+.++|+|=++. -+++ ++|.+|+-.|. +|.|..- .=|.||
T Consensus 169 sPNV~Di~eiA~a~eeaGaDGlt~--------INTl--------~PGMkIDI~~~----kPiLaNk--------~GGlSG 220 (308)
T TIGR01037 169 SPNVTDITEIAKAAEEAGADGLTL--------INTL--------RPGMKIDIKAK----KPILANK--------TGGLSG 220 (308)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEE--------EHHH--------HHHHHHHHHCC----CCCCEEC--------CCCCCC
T ss_conf 865668999988875327761640--------0120--------34677734207----8700004--------588507
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 33220135778998654313865269815899-8899999967998999742663789
Q gi|254780975|r 148 QQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 148 q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
-.--|=.+.-|=++-+.++. .+.|.==|||+ +|.+-+..=|||.-+=+|||+|=++
T Consensus 221 PAIKPiA~r~VYdly~~~dd-riPIiGvGGi~~~eDA~Efl~AGAsAVQvGtAvyy~g 277 (308)
T TIGR01037 221 PAIKPIAVRMVYDLYKEVDD-RIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRG 277 (308)
T ss_pred CCCCCEEEEEHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEEECCC
T ss_conf 50142212100004777378-2346863274558999999985220220002221177
No 344
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=79.03 E-value=5.4 Score=20.29 Aligned_cols=186 Identities=13% Similarity=0.222 Sum_probs=115.4
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf 70632588999999999996599899997342634584341--7899998641256416856788512033676404776
Q gi|254780975|r 9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC 86 (224)
Q Consensus 9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~ 86 (224)
|+.=+.|+..++--++..++.+..- =+-+--+.. ...++ =...++.+.+..+.|+-+||==-.....+....++|-
T Consensus 21 gaFNv~n~e~~~Avi~AAee~~sPv-Ilq~s~~~~-~~~g~~~~~~~~~~~a~~~~VPV~lHLDH~~~~e~i~~ai~~Gf 98 (283)
T PRK07998 21 GAFNTTNLETTISILNAIERSGLPN-FIQIAPTNA-QLSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGF 98 (283)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCE-EEECCHHHH-HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9878899999999999999978698-999775067-55599999999999999869989997588899999999997399
Q ss_pred CEEEEECCCCC---C---HHHHHHHHHHCCCEE----EEEE----------ECCCCHHHHHHHHHH--CCEEEEEEEE-C
Q ss_conf 07999706642---1---589998677649825----9985----------233344789988620--1402899830-6
Q gi|254780975|r 87 DIITFHPESSP---H---IRRSLRTIHAMGKKT----GVAI----------NPETPVAILEDVIDE--IDMILIMTVN-P 143 (224)
Q Consensus 87 d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Giai----------~p~T~~~~i~~~l~~--~D~vliM~V~-P 143 (224)
+.|-|-.-..+ + -.++.++++..|+.+ |-.- +..|.++....+... +|.+=+=--+ =
T Consensus 99 tSVM~DgS~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~G~ed~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiGt~H 178 (283)
T PRK07998 99 TSVMIDGAALPFEENIAFTQEAVDFCKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKTFVERTGCDMLAVSIGNVH 178 (283)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 88986099899999999999999999776997999853535754777775203899999999999868899964046645
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 776533220135778998654313865269815--8998899999967998999742663
Q gi|254780975|r 144 GFGGQQLIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFF 201 (224)
Q Consensus 144 G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif 201 (224)
|+.+.+-+ -+++++++++. .++++-.-| |+..+.++++.+.|+.-+-.||.+.
T Consensus 179 G~~~~p~l--~~~~l~~I~~~---~~iPLVLHGgSGi~~e~i~~ai~~Gi~KiNi~Tel~ 233 (283)
T PRK07998 179 GLDDIPRI--DIPLLKRIAEV---SPVPLVIHGGSGIPPDILRSFVNYRVAKVNIASDLR 233 (283)
T ss_pred CCCCCCCC--CHHHHHHHHHH---CCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHH
T ss_conf 67878863--89999998864---798789869999999999999986986999586899
No 345
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=78.85 E-value=5.4 Score=20.26 Aligned_cols=174 Identities=17% Similarity=0.288 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHCCCCEEEEE-EECCEECCCCCCCHH-------HHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEE
Q ss_conf 99999999996599899997-342634584341789-------9998641256416856788512033676404776079
Q gi|254780975|r 18 RLGEEISNITKAGAKQIHFD-VMDGCFVPNISFGAD-------VIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDII 89 (224)
Q Consensus 18 ~l~~~i~~l~~~~~d~iHiD-ImDg~fvpn~~~~~~-------~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i 89 (224)
.-.++...++++|+|-+=+- .-|--|-+ ..+|+ .++++.+.-.+|+-+-+.-++|..-+......|++.|
T Consensus 35 ~A~~dA~~leegG~DavivEN~gD~Pf~k--~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~vaA~~IA~a~gA~FI 112 (263)
T COG0434 35 RAVRDAAALEEGGVDAVIVENYGDAPFLK--DVGPETVAAMAVIVREVVREVSIPVGVNVLRNDAVAALAIAYAVGADFI 112 (263)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCC--CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 99989999984897689971357887777--7974788999999999987507661032102662888999986079779
Q ss_pred EE--ECCC--------CCCHHHHHHHHHHCCCEEEEE--E--ECCC-----CHHH-HHHHHH--HCCEEEEEEEECCCCC
Q ss_conf 99--7066--------421589998677649825998--5--2333-----4478-998862--0140289983067765
Q gi|254780975|r 90 TF--HPES--------SPHIRRSLRTIHAMGKKTGVA--I--NPET-----PVAI-LEDVID--EIDMILIMTVNPGFGG 147 (224)
Q Consensus 90 ~~--H~E~--------~~~~~~~i~~i~~~g~k~Gia--i--~p~T-----~~~~-i~~~l~--~~D~vliM~V~PG~~G 147 (224)
-+ +.++ ..+..+...+.+..+.++-+- + .-.+ +++. +..-+. ..|.|.+-+- -.|
T Consensus 113 RVN~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~---~TG 189 (263)
T COG0434 113 RVNVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGS---RTG 189 (263)
T ss_pred EEEEEECEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEECC---CCC
T ss_conf 98734342763565014448899998986167737976111321532378688999999997048877999566---678
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 33220135778998654313865269815899889999996799899974266378
Q gi|254780975|r 148 QQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQ 203 (224)
Q Consensus 148 q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~ 203 (224)
.+-. ++.++..++.. +...-|--|+|.+|+..+.+. +|-+++||++=+.
T Consensus 190 ~~~d---~~el~~a~~~~---~~pvlvGSGv~~eN~~~~l~~-adG~IvgT~lK~~ 238 (263)
T COG0434 190 SPPD---LEELKLAKEAV---DTPVLVGSGVNPENIEELLKI-ADGVIVGTSLKKG 238 (263)
T ss_pred CCCC---HHHHHHHHHCC---CCCEEEECCCCHHHHHHHHHH-CCCEEEEEEECCC
T ss_conf 9999---89999998626---987897368888899999987-2866997866038
No 346
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=78.52 E-value=5.6 Score=20.19 Aligned_cols=152 Identities=11% Similarity=0.106 Sum_probs=90.7
Q ss_pred EEEEEEEEECCHHHHHHCCCCCCEEEEEC-CCCCCHHHHHHHHHHCCCEEEEEEECCCC--HHHHHHHHHHCCEEEE---
Q ss_conf 68567885120336764047760799970-66421589998677649825998523334--4789988620140289---
Q gi|254780975|r 65 FDCHLMISSIDSHINIIADAGCDIITFHP-ESSPHIRRSLRTIHAMGKKTGVAINPETP--VAILEDVIDEIDMILI--- 138 (224)
Q Consensus 65 ~dvHLMv~~P~~~i~~~~~~g~d~i~~H~-E~~~~~~~~i~~i~~~g~k~Giai~p~T~--~~~i~~~l~~~D~vli--- 138 (224)
++..-+++.=...++...+.|+|+|.+-+ .+.+++.++-+.+++.|..+.|.-.-+|+ ++.+..++...|.|++
T Consensus 167 ~~lp~lTekD~~di~~a~~~~vD~valSFVr~~~Dv~~lr~~l~~~g~~~~IiaKIE~~~al~nl~eIi~~sDgIMIARG 246 (480)
T cd00288 167 VDLPALSEKDKADLRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASDGIMVARG 246 (480)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHCHHHHHHHCCEEEEECC
T ss_conf 78667987789999868875999999888898999999999999748866699985277666479999985388999778
Q ss_pred -EEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE-----CCCC--------HHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf -9830677653322013577899865431386526981-----5899--------8899999967998999742663789
Q gi|254780975|r 139 -MTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVD-----GGVT--------SRNIKSLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 139 -M~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vD-----GGvn--------~~~i~~l~~~Gad~~V~Gsaif~~~ 204 (224)
++++-|+.--+ ..=.+|-. ...+.+-.+.+. -=++ ...+...+--|+|.+.+..---..+
T Consensus 247 DLgvEi~~e~vp---~~Qk~Ii~---~c~~~gKPvIvATqmLeSMi~~p~PTRAEv~DVanAv~dG~DavMLs~ETa~G~ 320 (480)
T cd00288 247 DLGVEIPAEEVF---LAQKMLIA---KCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGK 320 (480)
T ss_pred CCCCCCCHHHHH---HHHHHHHH---HHHHCCCEEEEECCHHHHHHCCCCCCEEEHHHHHHHHHHCCCEEEECHHHCCCC
T ss_conf 655647988989---99999999---999839959996736887623899852102458889874586799753222787
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 989999999999997862
Q gi|254780975|r 205 GEISYAKRLNDLKKSALA 222 (224)
Q Consensus 205 d~~~~~~~l~~l~~~a~a 222 (224)
.|.++.+.+......++.
T Consensus 321 yPv~~V~~m~~I~~~aE~ 338 (480)
T cd00288 321 YPVEAVKAMARICLEAEK 338 (480)
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 989999999999999973
No 347
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=77.85 E-value=5.8 Score=20.07 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHCC--CCEEEEECC-C-CHHHHHHHH-HC-CCCEEEECHHHHCC
Q ss_conf 201357789986543138--652698158-9-988999999-67-99899974266378
Q gi|254780975|r 151 IESTIPKIRQAKALIGKR--SISLEVDGG-V-TSRNIKSLV-QA-GADLLVVGSSFFNQ 203 (224)
Q Consensus 151 ~~~~l~kI~~l~~~~~~~--~~~I~vDGG-v-n~~~i~~l~-~~-Gad~~V~Gsaif~~ 203 (224)
.+++.+++.++.+.-.+- ++-+-..|| | +.+.+..+. .. +++-|+.+|++=.-
T Consensus 194 l~~a~~~~~~i~~aa~~v~~diIvLchGGpI~~P~Da~~vl~~t~~~~Gf~GaSS~ERl 252 (268)
T pfam09370 194 LDDCVELINAIARAARSVNPDVIVLCHGGPIATPEDAQYVLDRTPGCHGFYGASSMERL 252 (268)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCHHHHH
T ss_conf 99999999999999998599869995178889989999999739777667633036664
No 348
>TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane.
Probab=77.74 E-value=5.9 Score=20.05 Aligned_cols=81 Identities=21% Similarity=0.305 Sum_probs=57.7
Q ss_pred EEEEEE---EC-CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHH-HHCCCCHHHH
Q ss_conf 289983---06-776533220135778998654313865269815899-88999999679989997426-6378998999
Q gi|254780975|r 136 ILIMTV---NP-GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSS-FFNQKGEISY 209 (224)
Q Consensus 136 vliM~V---~P-G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsa-if~~~d~~~~ 209 (224)
|+=|.+ ++ |-||.++...+.+-||++.+....+ +.|.-=|||+ .+++.+=+++||.-+=+=|+ ||+.|...+.
T Consensus 266 v~g~k~~r~~~GGLSGkPL~~kS~eiirrL~~~~~gr-~piIgVGGI~~~~~A~EkI~AGASLlQ~YsgfIy~GP~l~k~ 344 (370)
T TIGR01036 266 VTGPKNSREETGGLSGKPLQKKSTEIIRRLYKELKGR-LPIIGVGGISSAQNALEKIKAGASLLQIYSGFIYKGPPLVKE 344 (370)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-EEEEEECCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHH
T ss_conf 2563214356789887514477899999999996495-789962785747889999984712445642346677167999
Q ss_pred -HHHHHHHH
Q ss_conf -99999999
Q gi|254780975|r 210 -AKRLNDLK 217 (224)
Q Consensus 210 -~~~l~~l~ 217 (224)
.+.|..+.
T Consensus 345 i~~~i~~lL 353 (370)
T TIGR01036 345 IVKEIEKLL 353 (370)
T ss_pred HHHHHHHHH
T ss_conf 999999997
No 349
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=77.39 E-value=6 Score=19.99 Aligned_cols=50 Identities=16% Similarity=0.448 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCC---EEEEECCCCHHHHHHHHHCCCCEEEECH-H-HHCCCC
Q ss_conf 778998654313865---2698158998899999967998999742-6-637899
Q gi|254780975|r 156 PKIRQAKALIGKRSI---SLEVDGGVTSRNIKSLVQAGADLLVVGS-S-FFNQKG 205 (224)
Q Consensus 156 ~kI~~l~~~~~~~~~---~I~vDGGvn~~~i~~l~~~Gad~~V~Gs-a-if~~~d 205 (224)
+-++++|+..++.-+ -+..-||==.+...-....|...+|.-| + +|-.++
T Consensus 199 ~~~~~ir~~~p~~~~LiPG~GAQGg~~~~~~~~~~~~~~g~lvnsSR~I~~a~~~ 253 (277)
T PRK00125 199 PELAAVRKIVGDMPLLIPGIGAQGGDAEATVRAGGAAGNGMIPNSSRAILYAGPG 253 (277)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHCCCCCCEEEECCHHHHHCCCC
T ss_conf 7789999867997598256303578999999864658884699858899825898
No 350
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=77.39 E-value=6 Score=19.99 Aligned_cols=100 Identities=17% Similarity=0.258 Sum_probs=59.7
Q ss_pred HHHCCCHH---HHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEE--EEEEEEEECCHHHHHHCCC
Q ss_conf 06325889---999999999965998999973426345843417899998641256416--8567885120336764047
Q gi|254780975|r 10 SILAADFS---RLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVF--DCHLMISSIDSHINIIADA 84 (224)
Q Consensus 10 Sil~~d~~---~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~--dvHLMv~~P~~~i~~~~~~ 84 (224)
|+...|.. .--+++.+|.++|++.+-+-+-|-. ..+-++.|++.++.|+ |+|.= + +..-.-.+.
T Consensus 32 SMt~t~T~Dv~at~~Qi~~L~~aGceiVRvavp~~~-------~a~al~~I~~~~~iPlvADIHF~---~-~lAl~a~~~ 100 (367)
T PRK00366 32 SMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDME-------AAAALPEIKKQLPVPLVADIHFD---Y-RLALKAAEA 100 (367)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHH-------HHHHHHHHHHHCCCCEECCCCCC---H-HHHHHHHHH
T ss_conf 568997443899999999999849998998459999-------99969999984789703125414---8-999999986
Q ss_pred CCCEEEEECCCC---CCHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 760799970664---215899986776498259985233
Q gi|254780975|r 85 GCDIITFHPESS---PHIRRSLRTIHAMGKKTGVAINPE 120 (224)
Q Consensus 85 g~d~i~~H~E~~---~~~~~~i~~i~~~g~k~Giai~p~ 120 (224)
|+|.+-+-.-.. +....+++.++++|+-.-|..|-+
T Consensus 101 g~~kiRINPGNig~~e~~~~vv~~ak~~~ipIRIGvN~G 139 (367)
T PRK00366 101 GADALRINPGNIGRDERFKEVVEAAKDYGIPIRIGVNAG 139 (367)
T ss_pred HHHHEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 411131378756864889999999998499766446778
No 351
>pfam04551 GcpE GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.
Probab=77.25 E-value=6 Score=19.96 Aligned_cols=100 Identities=18% Similarity=0.317 Sum_probs=61.8
Q ss_pred HHHCC---CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEE--EEEEEEEECCHHHHHHCCC
Q ss_conf 06325---889999999999965998999973426345843417899998641256416--8567885120336764047
Q gi|254780975|r 10 SILAA---DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVF--DCHLMISSIDSHINIIADA 84 (224)
Q Consensus 10 Sil~~---d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~--dvHLMv~~P~~~i~~~~~~ 84 (224)
|+... |...--+++.+|.++|++.+-+-+-|-. ..+-++.|++.++.|+ |+|. +|..-+. -.++
T Consensus 21 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~-------~a~al~~I~~~~~iPlVADIHF---~~~lAl~-a~~~ 89 (345)
T pfam04551 21 SMTNTDTRDVEATVAQIKRLEEAGCDIVRVAVPDME-------AAEALKEIKKQSPIPLVADIHF---DYRLALE-AIEA 89 (345)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHH-------HHHHHHHHHHHCCCCCEEECCC---CHHHHHH-HHHH
T ss_conf 568998620899999999999859998998879999-------9984999998589971400424---8999999-9986
Q ss_pred CCCEEEEECCCC---CCHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 760799970664---215899986776498259985233
Q gi|254780975|r 85 GCDIITFHPESS---PHIRRSLRTIHAMGKKTGVAINPE 120 (224)
Q Consensus 85 g~d~i~~H~E~~---~~~~~~i~~i~~~g~k~Giai~p~ 120 (224)
|+|-+-+-.-.. +....+++.++++|+-.-|..|-+
T Consensus 90 g~~kiRINPGNig~~~~~~~vv~~ak~~~~pIRIGvN~G 128 (345)
T pfam04551 90 GVDKIRINPGNIGRREKVKEVVEAAKERGIPIRIGVNSG 128 (345)
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 220156799774867878999999998399789832677
No 352
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=77.19 E-value=6.1 Score=19.95 Aligned_cols=98 Identities=11% Similarity=0.171 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEEC---CHHHHHHCCCCCCEEEEEC
Q ss_conf 9999999999965998999973426345843417899998641256416856788512---0336764047760799970
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSI---DSHINIIADAGCDIITFHP 93 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P---~~~i~~~~~~g~d~i~~H~ 93 (224)
..+.+.+......++.. +.+.+|.+..+..+ .+.++.+++.. ..+.+++.+... ...++.+.++|...+.+..
T Consensus 31 ~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~l~~~~~~~-~~~~i~~~t~~~~~~~~~l~~l~~~g~~~~~i~l 106 (204)
T cd01335 31 EEILDIVLEAKERGVEV--VILTGGEPLLYPEL-AELLRRLKKEL-PGFEISIETNGTLLTEELLKELKELGLDGVGVSL 106 (204)
T ss_pred HHHHHHHHHHHHCCCEE--EEEECCCCCCCCCC-CHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999998759869--99724676666532-10135455306-8717999833654769998775403754222243
Q ss_pred CCCCC---------------HHHHHHHHHHCCCEEEEEEE
Q ss_conf 66421---------------58999867764982599852
Q gi|254780975|r 94 ESSPH---------------IRRSLRTIHAMGKKTGVAIN 118 (224)
Q Consensus 94 E~~~~---------------~~~~i~~i~~~g~k~Giai~ 118 (224)
|+.++ ..+.++.+++.|..++..+-
T Consensus 107 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i 146 (204)
T cd01335 107 DSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLL 146 (204)
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 5689999999848899759999999999867998999999
No 353
>KOG4201 consensus
Probab=76.47 E-value=6.3 Score=19.83 Aligned_cols=192 Identities=16% Similarity=0.197 Sum_probs=113.1
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCC--EEEEEE---EEEECCHHHHHHCCC
Q ss_conf 063258899999999999659989999734263458434178999986412564--168567---885120336764047
Q gi|254780975|r 10 SILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDS--VFDCHL---MISSIDSHINIIADA 84 (224)
Q Consensus 10 Sil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~--~~dvHL---Mv~~P~~~i~~~~~~ 84 (224)
.+++-|+..-+..+ ...++|+.-+.+ ..|-++ |.-+.+.+..+|+.... |--+-| .+-+|.. |-.-...
T Consensus 85 G~ik~d~~~ae~A~-~Yak~GAs~iSV-LTe~k~---FkGsledL~~irk~~~~k~p~~~lL~KeFivd~~Q-I~~aR~~ 158 (289)
T KOG4201 85 GIIKLDANAAEQAL-AYAKGGASCISV-LTEPKW---FKGSLEDLVAIRKIAGVKCPPKCLLRKEFIVDPYQ-IYEARLK 158 (289)
T ss_pred CCCCCCCCHHHHHH-HHHHCCCEEEEE-ECCCHH---HCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHH-HHHHHHC
T ss_conf 86202557899999-998458554554-237045---30538789999997167688176767887357999-9999863
Q ss_pred CCCEEEEECCCC--CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 760799970664--215899986776498259985233344789988620140289983067765332201357789986
Q gi|254780975|r 85 GCDIITFHPESS--PHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAK 162 (224)
Q Consensus 85 g~d~i~~H~E~~--~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~ 162 (224)
|+|.+..-+-.. .++...++.++..|+.+-+-.|..... ...+.. .+-+.+||-..- ..|.- -++.-+.+-
T Consensus 159 GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~~eEm---~ralei--GakvvGvNNRnL-~sFeV-DlstTskL~ 231 (289)
T KOG4201 159 GADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVNDEEEM---QRALEI--GAKVVGVNNRNL-HSFEV-DLSTTSKLL 231 (289)
T ss_pred CCCEEEHHHHHCCHHHHHHHHHHHHHCCCCCEEEECCHHHH---HHHHHH--CCEEEEECCCCC-CEEEE-CHHHHHHHH
T ss_conf 88513118987074889999999887187500330659999---899973--757874347764-13665-102578898
Q ss_pred HHHHCCCC-EEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
Q ss_conf 54313865-269815899889999996799899974266378998999999999
Q gi|254780975|r 163 ALIGKRSI-SLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLND 215 (224)
Q Consensus 163 ~~~~~~~~-~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~ 215 (224)
+.++ +++ -+..-|=-+.+.+..+.++|+..+.+|-++.++.||..++..+..
T Consensus 232 E~i~-kDvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sDp~k~i~eL~~ 284 (289)
T KOG4201 232 EGIP-KDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSDPKKFIHELFG 284 (289)
T ss_pred HHCC-CCEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHCCCHHHHHHHHHC
T ss_conf 5086-3269874157888788999987486189852777724588899999856
No 354
>TIGR01919 hisA-trpF bifunctional HisA/TrpF protein; InterPro: IPR010188 This entry represents a bifunctional protein possessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities . Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC Gram-positive). The enzyme is closely related to the monofunctional HisA proteins and in Actinobacteria, the classical monofunctional TrpF is generally absent.; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0004640 phosphoribosylanthranilate isomerase activity, 0000105 histidine biosynthetic process, 0000162 tryptophan biosynthetic process, 0005737 cytoplasm.
Probab=75.79 E-value=6.6 Score=19.71 Aligned_cols=177 Identities=18% Similarity=0.285 Sum_probs=117.2
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEE-EECCHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 99999999965998999973426345843417899998641256416856788-51203367640477607999706642
Q gi|254780975|r 19 LGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMI-SSIDSHINIIADAGCDIITFHPESSP 97 (224)
Q Consensus 19 l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv-~~P~~~i~~~~~~g~d~i~~H~E~~~ 97 (224)
++..++= .+.|+.|||+==.|--| |-+=+.+.+.+|-..-+-.++|-|-= -.-..=++.-...|+.+|-+=.-+.+
T Consensus 35 ~eaA~~W-~~~GA~WiHlVDLDAAF--g~G~N~e~l~EiVg~LddrV~vELsGGiRDD~SL~~AL~tGa~RVNiGTAALE 111 (246)
T TIGR01919 35 LEAALKW-QEDGAEWIHLVDLDAAF--GRGSNHELLAEIVGKLDDRVDVELSGGIRDDESLEAALATGAARVNIGTAALE 111 (246)
T ss_pred HHHHHHH-HHCCCCEEEEEEEHHHC--CCCCHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHCCCEEECCHHCCC
T ss_conf 7898998-86365075335300013--78970889999986307878898506855678999999807734400101046
Q ss_pred CHHHHHHHHHHCCCEE--EEEEEC------------CCCHHHHHHHHHHCC-----EEEEEEEE-CCCCCCCCCCHHHHH
Q ss_conf 1589998677649825--998523------------334478998862014-----02899830-677653322013577
Q gi|254780975|r 98 HIRRSLRTIHAMGKKT--GVAINP------------ETPVAILEDVIDEID-----MILIMTVN-PGFGGQQLIESTIPK 157 (224)
Q Consensus 98 ~~~~~i~~i~~~g~k~--Giai~p------------~T~~~~i~~~l~~~D-----~vliM~V~-PG~~Gq~f~~~~l~k 157 (224)
+|+.+-.-|+++|-++ ||.+.. .++=-.+...++.+| +-.+-=|. -|.=+.| -++-
T Consensus 112 ~P~W~A~vI~~yGd~vAVgl~V~~~DGeh~l~g~GW~~dGGDLwevl~~LDS~GCsRfVVTDv~KDG~lsGP----N~~L 187 (246)
T TIGR01919 112 NPEWIASVIKKYGDKVAVGLDVRLIDGEHRLRGRGWESDGGDLWEVLERLDSEGCSRFVVTDVAKDGTLSGP----NVEL 187 (246)
T ss_pred CCHHHHHHHHHCCCEEEEEEEEEEECCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCC----CHHH
T ss_conf 823788998760776875457898738566604675578862899998743488540378501237866785----2899
Q ss_pred HHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 8998654313865269815899----88999999679989997426637899
Q gi|254780975|r 158 IRQAKALIGKRSISLEVDGGVT----SRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 158 I~~l~~~~~~~~~~I~vDGGvn----~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
+++..+ +++-+|..-|||+ ...+.++.+.|+|..++|-++|...-
T Consensus 188 L~eVA~---~TDA~v~ASGGiS~LdDl~~i~~l~~~Gvds~I~GKaLY~~~F 236 (246)
T TIGR01919 188 LAEVAE---RTDAPVVASGGISKLDDLRAIAKLAEEGVDSAIVGKALYARKF 236 (246)
T ss_pred HHHHHH---HCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHHC
T ss_conf 999886---2288478717756188999999997558865762025553203
No 355
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=75.61 E-value=2.5 Score=22.45 Aligned_cols=182 Identities=15% Similarity=0.273 Sum_probs=104.1
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCH----HHHHHHH-HCCCCEEEEEEEEEECCHHHHHHCC
Q ss_conf 7063258899999999999659989999734263458434178----9999864-1256416856788512033676404
Q gi|254780975|r 9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGA----DVIRSLR-SYSDSVFDCHLMISSIDSHINIIAD 83 (224)
Q Consensus 9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~----~~i~~i~-~~t~~~~dvHLMv~~P~~~i~~~~~ 83 (224)
|+.=+.|+..+.--++..++.+..-| +-+-.|.. .. +|. ..++.+. ++++.|+-+||==-.-...+.+..+
T Consensus 20 ~AfNv~n~e~~~avi~AAee~~sPvI-lq~s~~~~-~~--~g~~~~~~~~~~~a~~~a~VPValHLDH~~~~e~~~~ai~ 95 (307)
T PRK05835 20 GAFNFVNFEMLNAIFEAGNEENSPLF-IQASEGAI-KY--MGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVK 95 (307)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEE-EEECHHHH-HH--CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 98778999999999999999789989-99573377-66--7989999999999986699998998999999999999998
Q ss_pred CCCCEEEEECCCCC---C---HHHHHHHHHHCCCEE----EEE--------EE----CCCCHHHHHHHHHH--CCEEEEE
Q ss_conf 77607999706642---1---589998677649825----998--------52----33344789988620--1402899
Q gi|254780975|r 84 AGCDIITFHPESSP---H---IRRSLRTIHAMGKKT----GVA--------IN----PETPVAILEDVIDE--IDMILIM 139 (224)
Q Consensus 84 ~g~d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Gia--------i~----p~T~~~~i~~~l~~--~D~vliM 139 (224)
+|-+.|-+-.-..+ + -.++.+++++.|+-+ |-. .. ..|.++..+.+... +|.+=+
T Consensus 96 ~GFsSVM~DgS~l~~eeNI~~tk~vve~ah~~gv~VEaElG~i~G~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAv- 174 (307)
T PRK05835 96 AGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAP- 174 (307)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHH-
T ss_conf 1998799519989999999999999999987098699974312566777676653223479999999998747079999-
Q ss_pred EE-E-CC---CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-----------------------CCCHHHHHHHHHCCC
Q ss_conf 83-0-67---76533220135778998654313865269815-----------------------899889999996799
Q gi|254780975|r 140 TV-N-PG---FGGQQLIESTIPKIRQAKALIGKRSISLEVDG-----------------------GVTSRNIKSLVQAGA 191 (224)
Q Consensus 140 ~V-~-PG---~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG-----------------------Gvn~~~i~~l~~~Ga 191 (224)
++ + =| +.|.+-. -+++++++++. .++++..-| |+..+.+++.++.|+
T Consensus 175 aiGn~HG~yk~~g~p~l--~~~~L~~I~~~---~~vPLVLHGgSgvpd~~~~~~~~~gg~~~~~~G~~~e~i~~ai~~Gv 249 (307)
T PRK05835 175 AIGTSHGAFKFKGEPKL--DFERLQEVKRL---TNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGI 249 (307)
T ss_pred HHCCCCCCCCCCCCCCC--CHHHHHHHHHC---CCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 86655777777899767--88999999841---79987956898760788888750266567888999999999998697
Q ss_pred CEEEECHHH
Q ss_conf 899974266
Q gi|254780975|r 192 DLLVVGSSF 200 (224)
Q Consensus 192 d~~V~Gsai 200 (224)
.-+-.++-+
T Consensus 250 ~KiNI~Tdl 258 (307)
T PRK05835 250 NKVNTDTDL 258 (307)
T ss_pred EEEEECHHH
T ss_conf 699868778
No 356
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family; InterPro: IPR011288 This entry describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4 , .; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0019512 lactose catabolic process via tagatose-6-phosphate.
Probab=75.50 E-value=2.4 Score=22.51 Aligned_cols=178 Identities=15% Similarity=0.290 Sum_probs=102.1
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCEEEEE-EECCEECCC-CCC-CHHHHHHH----HHCCCCEEEEEEEEEECCHHHHHHCC
Q ss_conf 632588999999999996599899997-342634584-341-78999986----41256416856788512033676404
Q gi|254780975|r 11 ILAADFSRLGEEISNITKAGAKQIHFD-VMDGCFVPN-ISF-GADVIRSL----RSYSDSVFDCHLMISSIDSHINIIAD 83 (224)
Q Consensus 11 il~~d~~~l~~~i~~l~~~~~d~iHiD-ImDg~fvpn-~~~-~~~~i~~i----~~~t~~~~dvHLMv~~P~~~i~~~~~ 83 (224)
+-+.|.=|||+ ++.+-+- +--+|-= |.=|+ |. |+. |++.+-+| .+.-+.|+=+||==-+-.+-|.+=+.
T Consensus 18 vPAFNIHNlET-~QvvvEt-AAel~SPVIlAGT--PGTf~yaG~e~l~al~~~~a~~Y~~PlAlHLDHhe~~ddI~~kv~ 93 (282)
T TIGR01858 18 VPAFNIHNLET-IQVVVET-AAELRSPVILAGT--PGTFKYAGTEYLVALCSAAAKKYDMPLALHLDHHESFDDIKQKVA 93 (282)
T ss_pred CCCCCHHHHHH-HHHHHHH-HHHCCCCEEEECC--CCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHH
T ss_conf 26400212899-9999999-8622788364068--641011007889999999986179960310334688768899975
Q ss_pred CCCCEEEEECCCC------CCHHHHHHHHHHCCCEE--------E----EEEE----CCCCHHHHHHHHHH--CCEEEEE
Q ss_conf 7760799970664------21589998677649825--------9----9852----33344789988620--1402899
Q gi|254780975|r 84 AGCDIITFHPESS------PHIRRSLRTIHAMGKKT--------G----VAIN----PETPVAILEDVIDE--IDMILIM 139 (224)
Q Consensus 84 ~g~d~i~~H~E~~------~~~~~~i~~i~~~g~k~--------G----iai~----p~T~~~~i~~~l~~--~D~vliM 139 (224)
+|...+=+=.-+. .-..++..+|+..-+-+ | +..+ ..|.+..=..+++. +|-+
T Consensus 94 aGvkS~MIDaSHl~F~~Nv~lvk~VVdFcHr~D~sVEAELG~LgG~EDDl~Vde~~AlyTdP~~A~~Fve~TGvDSL--- 170 (282)
T TIGR01858 94 AGVKSVMIDASHLPFEQNVKLVKEVVDFCHRYDASVEAELGRLGGVEDDLSVDEEDALYTDPDEAKEFVEATGVDSL--- 170 (282)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCHHH---
T ss_conf 37723556577788888778866666442167865766608465532664254010235896899999874275478---
Q ss_pred EEECC-----CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 83067-----76533220135778998654313865269815--899889999996799899974266
Q gi|254780975|r 140 TVNPG-----FGGQQLIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSF 200 (224)
Q Consensus 140 ~V~PG-----~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsai 200 (224)
.|=.| |.+-|-+ =++|+.++|+ .-++++-.=| ||..|-+++.++.|+--+-+|+-|
T Consensus 171 AvAIGTAHGlY~~aP~L--DF~RL~~IR~---~v~vPLVLHGASdvpde~v~~~IeLGi~KvNVATeL 233 (282)
T TIGR01858 171 AVAIGTAHGLYKEAPKL--DFDRLAKIRE---KVDVPLVLHGASDVPDEDVRRTIELGICKVNVATEL 233 (282)
T ss_pred HHHHHHHHHHHHCCCCC--CHHHHHHHHH---CCCCCEEECCCCCCCHHHHHHHHHHCCCEEECCHHC
T ss_conf 89886653232126753--3789987522---037772421777887678999987074134111110
No 357
>pfam01208 URO-D Uroporphyrinogen decarboxylase (URO-D).
Probab=75.17 E-value=6.9 Score=19.61 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=9.1
Q ss_pred HHHHHHCCCCCCEEEE
Q ss_conf 3367640477607999
Q gi|254780975|r 76 SHINIIADAGCDIITF 91 (224)
Q Consensus 76 ~~i~~~~~~g~d~i~~ 91 (224)
.|++...++|+|.|.+
T Consensus 183 ~~~~~qi~aGad~i~i 198 (337)
T pfam01208 183 EYLKAQIEAGADAIQI 198 (337)
T ss_pred HHHHHHHHHCCCEEEE
T ss_conf 9999999829967998
No 358
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=74.71 E-value=7 Score=19.54 Aligned_cols=139 Identities=15% Similarity=0.225 Sum_probs=62.4
Q ss_pred CCEEEEEEEEEECCHH---HHHHCCCCCCEEEEECCC--------------CCC---HHHHHHHHHHCC--CEEEEEEEC
Q ss_conf 6416856788512033---676404776079997066--------------421---589998677649--825998523
Q gi|254780975|r 62 DSVFDCHLMISSIDSH---INIIADAGCDIITFHPES--------------SPH---IRRSLRTIHAMG--KKTGVAINP 119 (224)
Q Consensus 62 ~~~~dvHLMv~~P~~~---i~~~~~~g~d~i~~H~E~--------------~~~---~~~~i~~i~~~g--~k~Giai~p 119 (224)
+.|+-+.|-..+|+.. .....+.|+|.|-+-+-+ ..+ +.++++.+++.. +-+-+=+..
T Consensus 66 e~p~~vQl~gsdp~~laeaA~~~~~~g~~~IDlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl 145 (323)
T COG0042 66 ERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL 145 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 78779997389989999999999866999898768999289808984477717989999999999985388874999857
Q ss_pred CC-----CHHHHHHHHHH--CCEEEEEEEEC--CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHH-
Q ss_conf 33-----44789988620--14028998306--77653322013577899865431386526981589-9889999996-
Q gi|254780975|r 120 ET-----PVAILEDVIDE--IDMILIMTVNP--GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQ- 188 (224)
Q Consensus 120 ~T-----~~~~i~~~l~~--~D~vliM~V~P--G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~- 188 (224)
+- ....+...+.. ++.+.|.+-+. ++.|. .-++.|+++|+..+. +.+..-|+| +.+.+..+.+
T Consensus 146 G~d~~~~~~~~ia~~~~~~G~~~ltVHgRtr~~~y~~~----a~~~~I~~vk~~~~~--ipvi~NGdI~s~~~a~~~l~~ 219 (323)
T COG0042 146 GWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGP----ADWDYIKELKEAVPS--IPVIANGDIKSLEDAKEMLEY 219 (323)
T ss_pred CCCCHHCCHHHHHHHHHHCCCCEEEEECCCHHHCCCCC----CCHHHHHHHHHHCCC--CEEEECCCCCCHHHHHHHHHH
T ss_conf 87800200999999999679878999556676468986----487999999986799--759857994999999999984
Q ss_pred CCCCEEEECHHHHCCCCH
Q ss_conf 799899974266378998
Q gi|254780975|r 189 AGADLLVVGSSFFNQKGE 206 (224)
Q Consensus 189 ~Gad~~V~Gsaif~~~d~ 206 (224)
.|+|-+-+|.+.++.|..
T Consensus 220 tg~DgVMigRga~~nP~l 237 (323)
T COG0042 220 TGADGVMIGRGALGNPWL 237 (323)
T ss_pred HCCCEEEECHHHHCCCHH
T ss_conf 189879974353169557
No 359
>pfam09587 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=74.65 E-value=7.1 Score=19.53 Aligned_cols=123 Identities=24% Similarity=0.338 Sum_probs=69.2
Q ss_pred EEECCHHHHHHCCCCCCEEEEECCCCCC-----HHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHHHCC--EEEEEEEE
Q ss_conf 8512033676404776079997066421-----58999867764982-5998523334478998862014--02899830
Q gi|254780975|r 71 ISSIDSHINIIADAGCDIITFHPESSPH-----IRRSLRTIHAMGKK-TGVAINPETPVAILEDVIDEID--MILIMTVN 142 (224)
Q Consensus 71 v~~P~~~i~~~~~~g~d~i~~H~E~~~~-----~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~~~D--~vliM~V~ 142 (224)
..-|.++++.+..+|.|.+++==.++-| +.++++.+++.|+. +|...+.+ +.-.+.+-.++ .|-+++..
T Consensus 61 f~~~~~~~~~L~~~G~d~vslANNH~~D~G~~G~~~T~~~L~~~gi~~~G~g~~~~---~a~~p~~~~~~g~kia~l~~t 137 (237)
T pfam09587 61 FRAPPENAEALKAAGFDVVSLANNHSLDYGEEGLLDTLDALDRAGIAHAGAGRNLE---EARRPAILEVNGIRIAFLAYT 137 (237)
T ss_pred EECCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH---HCCCCEEEEECCCEEEEEEEE
T ss_conf 77999999999984999999577643325779999999999987996058889946---627808999799389999987
Q ss_pred CCCCC---------CC-CC-CHHHHHHHHHHHHHHCCCCE-EEEECCCC---------HHHHHHHHHCCCCEEEECHH
Q ss_conf 67765---------33-22-01357789986543138652-69815899---------88999999679989997426
Q gi|254780975|r 143 PGFGG---------QQ-LI-ESTIPKIRQAKALIGKRSIS-LEVDGGVT---------SRNIKSLVQAGADLLVVGSS 199 (224)
Q Consensus 143 PG~~G---------q~-f~-~~~l~kI~~l~~~~~~~~~~-I~vDGGvn---------~~~i~~l~~~Gad~~V~Gsa 199 (224)
-+..+ -. +. +...+.|+++|+ +.++- +.+-.|.. .+....+.++|||.++....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~k~---~~D~vIv~~HwG~E~~~~p~~~q~~~a~~lidaGaDlIiGhHp 212 (237)
T pfam09587 138 YGTNGWGAGPYRPGVNPLDEEKIKADIRRAKK---KADIVIVSLHWGVEYQYEPTPEQRELAHALIDAGADLVIGHHP 212 (237)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC---CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 58787567888875575699999999998750---7999999877566787699999999999999779999991899
No 360
>TIGR02708 L_lactate_ox L-lactate oxidase; InterPro: IPR014080 Members of this entry oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence..
Probab=74.60 E-value=6 Score=19.97 Aligned_cols=54 Identities=17% Similarity=0.363 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECH-HHHCCCC
Q ss_conf 20135778998654313865269815899-8899999967998999742-6637899
Q gi|254780975|r 151 IESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGS-SFFNQKG 205 (224)
Q Consensus 151 ~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gs-aif~~~d 205 (224)
-|.+++.+.++.+..++ .++|--|-||+ -+++.+....|||.+-+|. .||+---
T Consensus 267 ~PaaFD~L~~vAE~V~~-rVPIVFDSGvRRG~Hv~KALASGAD~VAlGRPv~yGLAl 322 (368)
T TIGR02708 267 GPAAFDSLQEVAEAVDK-RVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLAL 322 (368)
T ss_pred CCCCCHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHHCCCCEEECCCHHHHHHHH
T ss_conf 87520006999998528-556685088432578999872356443013235666550
No 361
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=74.52 E-value=7.1 Score=19.51 Aligned_cols=147 Identities=14% Similarity=0.209 Sum_probs=91.9
Q ss_pred HHHHHHHH-CCCCEEEEEEEEEECC----HHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHH
Q ss_conf 99998641-2564168567885120----336764047760799970664215899986776498259985233344789
Q gi|254780975|r 52 DVIRSLRS-YSDSVFDCHLMISSID----SHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAIL 126 (224)
Q Consensus 52 ~~i~~i~~-~t~~~~dvHLMv~~P~----~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i 126 (224)
+.|++.|+ .|+.|+-|-+|...|. ..++-+.+.++..+++.. .+|... ..+++.|+++-..+ .++...
T Consensus 44 ~eI~k~r~~ltdkPFGVNi~~~~p~~~~~~~~~vi~e~kv~vv~~ag---G~P~~~-~~Lk~aGikvi~~V---~Sv~lA 116 (320)
T cd04743 44 ALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAG---GRPDQA-RALEAIGISTYLHV---PSPGLL 116 (320)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECC---CCCHHH-HHHHHCCCEEEEEC---CCHHHH
T ss_conf 99999999825998445575138872257888888616998999568---890787-99998699799977---999999
Q ss_pred HHHHH-HCCEEEEEEEECC-CCCC----CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH-HHHHHHCCCC-------
Q ss_conf 98862-0140289983067-7653----3220135778998654313865269815899889-9999967998-------
Q gi|254780975|r 127 EDVID-EIDMILIMTVNPG-FGGQ----QLIESTIPKIRQAKALIGKRSISLEVDGGVTSRN-IKSLVQAGAD------- 192 (224)
Q Consensus 127 ~~~l~-~~D~vliM~V~PG-~~Gq----~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~-i~~l~~~Gad------- 192 (224)
+.... -+|.|.+-+-+-| .-|. .+.|.+++.+....--.+..++++-.-|||-... +.-....|+.
T Consensus 117 k~~~~~GaDavIaEG~EaGGHiG~~~Tm~Lvpqvvdav~~~~~~~~~~~IPViaAGGI~DGRg~aaa~aLgA~~a~~g~~ 196 (320)
T cd04743 117 KQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAK 196 (320)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCHHHCCCC
T ss_conf 99998499999995745767767530134059898898603566556787489976745618999999838842231562
Q ss_pred -EEEECHH-HHCCCC
Q ss_conf -9997426-637899
Q gi|254780975|r 193 -LLVVGSS-FFNQKG 205 (224)
Q Consensus 193 -~~V~Gsa-if~~~d 205 (224)
-+-.|+. +|..+-
T Consensus 197 ~GVqmGTrfl~t~E~ 211 (320)
T cd04743 197 VGVLMGTAYLFTEEA 211 (320)
T ss_pred CEEEEECHHHCCHHH
T ss_conf 227860441101554
No 362
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=74.52 E-value=5.9 Score=20.01 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHCCC---CEEEEECCCCHHHHHHHHHCCC--CEEEECHHHHCC
Q ss_conf 3577899865431386---5269815899889999996799--899974266378
Q gi|254780975|r 154 TIPKIRQAKALIGKRS---ISLEVDGGVTSRNIKSLVQAGA--DLLVVGSSFFNQ 203 (224)
Q Consensus 154 ~l~kI~~l~~~~~~~~---~~I~vDGGvn~~~i~~l~~~Ga--d~~V~Gsaif~~ 203 (224)
...-.++.|+++++.+ .+|.+-|++++..|..|...|+ |.+=+|+.+...
T Consensus 268 La~Ls~~vR~~LD~aG~~~~kI~aSndLDE~~I~~L~~~ga~ID~fGVGT~LvT~ 322 (466)
T PRK09243 268 LAYLSKKVRKMLDEAGFTDTKIVASNDLDEYTIASLKAQGAPIDGFGVGTKLVTA 322 (466)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEECCCEEEEC
T ss_conf 9999999999997678888489994898999999999769972232045436755
No 363
>pfam05582 Peptidase_U57 YabG peptidase U57. YabG is a protease involved in the proteolysis and maturation of SpoIVA and YrbA proteins, conserved with the cortex and/or coat assembly by Bacillus subtilis.
Probab=74.48 E-value=7.1 Score=19.50 Aligned_cols=116 Identities=15% Similarity=0.292 Sum_probs=77.0
Q ss_pred EEECCCCCC-HHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHHHC-CEEEEEEEECCCCCC--CCCC--------HHHH
Q ss_conf 997066421-58999867764982-599852333447899886201-402899830677653--3220--------1357
Q gi|254780975|r 90 TFHPESSPH-IRRSLRTIHAMGKK-TGVAINPETPVAILEDVIDEI-DMILIMTVNPGFGGQ--QLIE--------STIP 156 (224)
Q Consensus 90 ~~H~E~~~~-~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~~~-D~vliM~V~PG~~Gq--~f~~--------~~l~ 156 (224)
..|....++ +...++.-++.|.. .|..+.-..-.+.+..+++.. -=|+++|-..|+.-. .|.. .-.+
T Consensus 108 VLHiDGD~~YL~~Cl~~Ykql~i~a~G~~i~E~eqP~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dL~~YrnSkyFVe 187 (287)
T pfam05582 108 VLHLDGDPEYLDKCLKVYKQLGLPAVGVHISEKEQPEKIESLLEKYRPDILVITGHDAYLKNKGDYGDLNNYRNSKYFVE 187 (287)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHCHHHHHHHHHHHCCCEEEEECCHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 88754989999999999997198458998360125299999998728998999584576337777346666541099999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHH-HHCCCCH
Q ss_conf 7899865431386526981589988999999679989997426-6378998
Q gi|254780975|r 157 KIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSS-FFNQKGE 206 (224)
Q Consensus 157 kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsa-if~~~d~ 206 (224)
-|+++|++.++.+--+...| --+.+...+.+||||..-+-+- +.-.-||
T Consensus 188 aVk~AR~y~p~~D~LVIFAG-ACQS~yEall~AGANFASSP~RVlIHaLDP 237 (287)
T pfam05582 188 TVKEARKYEPSLDQLVIFAG-ACQSHYEAIIEAGANFASSPSRVLIHALDP 237 (287)
T ss_pred HHHHHHHCCCCCCCEEEECC-HHHHHHHHHHHCCCCCCCCCCCEEEECCCC
T ss_conf 99999824899663899821-447889999972766447952167750585
No 364
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=74.41 E-value=7.2 Score=19.49 Aligned_cols=96 Identities=22% Similarity=0.289 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH------CCEEEEEEEE-CCCCCCCCCCHHHHH---HHHHHHHHHC
Q ss_conf 15899986776498259985233344789988620------1402899830-677653322013577---8998654313
Q gi|254780975|r 98 HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDE------IDMILIMTVN-PGFGGQQLIESTIPK---IRQAKALIGK 167 (224)
Q Consensus 98 ~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~------~D~vliM~V~-PG~~Gq~f~~~~l~k---I~~l~~~~~~ 167 (224)
|--...+.||+.|..-|+..+.+.+.+.+...+.. .|.+--.|.. |-. |.+....+ ...-.+-.+.
T Consensus 117 DTRaLTk~IR~~G~m~g~I~~~~~~~~~l~~~~~~~~~~~~~dLv~~VSt~~~y~----~~~~~~~~~~~~~~~~~~~~~ 192 (383)
T CHL00197 117 DTRALVRHLRRFGTMNGCISNQNLNLSYLEAKIKELPSMEGLDLAPSVTTSSYYE----WDEPSHPKWFYLADNKRPHSS 192 (383)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCEE----ECCCCCCCCCCCCCCCCCCCC
T ss_conf 7899999999649824999079899899999987489965785424851688777----068876543213434445888
Q ss_pred CCCE-EEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 8652-69815899889999996799899974
Q gi|254780975|r 168 RSIS-LEVDGGVTSRNIKSLVQAGADLLVVG 197 (224)
Q Consensus 168 ~~~~-I~vDGGvn~~~i~~l~~~Gad~~V~G 197 (224)
.+++ ..+|=|+....++.|.+.|+++.|+-
T Consensus 193 ~~~~VvviD~GiK~nILr~L~~~g~~v~VvP 223 (383)
T CHL00197 193 YPLRIIVIDFGVKYNILRRLKSFGCEITIVP 223 (383)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCEEEEEC
T ss_conf 8745999967771889999997899899989
No 365
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=74.40 E-value=7.2 Score=19.49 Aligned_cols=185 Identities=13% Similarity=0.163 Sum_probs=107.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECC--EECCCCCCCHHHHHHHHH--CCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf 706325889999999999965998999973426--345843417899998641--2564168567885120336764047
Q gi|254780975|r 9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDG--CFVPNISFGADVIRSLRS--YSDSVFDCHLMISSIDSHINIIADA 84 (224)
Q Consensus 9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg--~fvpn~~~~~~~i~~i~~--~t~~~~dvHLMv~~P~~~i~~~~~~ 84 (224)
|++=+.|+..+..-++..++.+..-+ +-+-.| .|.+.+..-...++.+.+ ....|+-+||==-.-...+....++
T Consensus 21 ~AfNv~n~e~~~Avi~AAee~~sPvI-lq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~VPV~lHLDH~~~~e~i~~ai~~ 99 (285)
T PRK07709 21 GQFNMNNLEWTQAILAAAEEEKSPVI-LGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDA 99 (285)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEE-EECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHC
T ss_conf 99788999999999999999788999-99374588765677899999999999838999889889999999999999972
Q ss_pred CCCEEEEECCCC---CC---HHHHHHHHHHCCCEE----EEE--------E--ECCCCHHHHHHHHHHCCEEEEEEEECC
Q ss_conf 760799970664---21---589998677649825----998--------5--233344789988620140289983067
Q gi|254780975|r 85 GCDIITFHPESS---PH---IRRSLRTIHAMGKKT----GVA--------I--NPETPVAILEDVIDEIDMILIMTVNPG 144 (224)
Q Consensus 85 g~d~i~~H~E~~---~~---~~~~i~~i~~~g~k~----Gia--------i--~p~T~~~~i~~~l~~~D~vliM~V~PG 144 (224)
|-+.|-+-.-.. ++ -.++.++++..|+.+ |-. - ...|.++....+.... .|-.+.|--|
T Consensus 100 Gf~SVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~T~pe~a~~Fv~~T-gvD~LAvaiG 178 (285)
T PRK07709 100 GFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEAT-GIDCLAPALG 178 (285)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCEEEHHHC
T ss_conf 997798529989999999999999999987498399972323675677677555157999999999731-8788842205
Q ss_pred C-----CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 7-----6533220135778998654313865269815--899889999996799899974266
Q gi|254780975|r 145 F-----GGQQLIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSF 200 (224)
Q Consensus 145 ~-----~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsai 200 (224)
. .|.+-. -+++++++++ ..++++-.-| |+..+.++++++.|+..+-.++-+
T Consensus 179 n~HG~yk~~p~l--~~~~l~~i~~---~~~vPLVLHGgSG~~~e~i~~ai~~Gv~KiNi~T~l 236 (285)
T PRK07709 179 SVHGPYKGEPNL--GFAEMEQVRD---FTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTEN 236 (285)
T ss_pred CCCCCCCCCCCC--CHHHHHHHHH---CCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHH
T ss_conf 555776898876--6999999984---059987964999999999999998598599988288
No 366
>pfam05853 DUF849 Prokaryotic protein of unknown function (DUF849). This family consists of several hypothetical prokaryotic proteins with no known function.
Probab=74.32 E-value=7.2 Score=19.48 Aligned_cols=184 Identities=13% Similarity=0.146 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEEC---CEECCCCCCCHHHHHHHHHC-CCCEEEEEE---EEEECCHHHHHHCCCCCC
Q ss_conf 88999999999996599899997342---63458434178999986412-564168567---885120336764047760
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDVMD---GCFVPNISFGADVIRSLRSY-SDSVFDCHL---MISSIDSHINIIADAGCD 87 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDImD---g~fvpn~~~~~~~i~~i~~~-t~~~~dvHL---Mv~~P~~~i~~~~~~g~d 87 (224)
-.-++.++...|.++|+..+|+-+=| |.-.......-+.++.||+. +++.+-+-. ...+|+.-+..+...++|
T Consensus 24 Tp~Eia~~A~~c~~AGAsivH~HvRd~~dG~~s~d~~~y~e~i~~Ir~~~pd~ii~~Ttg~~~~~~~eeR~~~v~~~~Pd 103 (274)
T pfam05853 24 TPEEIAEEAVAAAEAGAAIVHLHVRDPEDGRPSQDPELFREVLERIREAVPDVIINLTTGGSPGMTVEERLAPVEALRPE 103 (274)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 98999999999997087389988447888990688999999999999878996899457877889888999999860988
Q ss_pred EEEEECCCC---------------CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH------CCEEEEEEEECCCC
Q ss_conf 799970664---------------215899986776498259985233344789988620------14028998306776
Q gi|254780975|r 88 IITFHPESS---------------PHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDE------IDMILIMTVNPGFG 146 (224)
Q Consensus 88 ~i~~H~E~~---------------~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~------~D~vliM~V~PG~~ 146 (224)
+.++..-+. ..+.++..++++.|+++-+.+=-...+..+..++.. .-+.++|++ .+
T Consensus 104 ~aSl~~gs~nf~~~~~d~v~~n~~~~~~~~~~~~~~~gi~pe~e~yd~g~l~~~~~l~~~G~l~~p~~~~~vlG~---~~ 180 (274)
T pfam05853 104 MASLNMGSMNFGLYSRDMVFPNTPADVEEFAARMQEAGVKPEFECFDVGHLRNAARLLKRGLLKGPLFVQFVLGV---LG 180 (274)
T ss_pred EEEECCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECC---CC
T ss_conf 577446664356567772013999999999999998599149999779999999999970888999579999626---87
Q ss_pred CCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHCCCCEEEEC-HHHHCCC
Q ss_conf 5332201357789986543138-65269815899889999996799899974-2663789
Q gi|254780975|r 147 GQQLIESTIPKIRQAKALIGKR-SISLEVDGGVTSRNIKSLVQAGADLLVVG-SSFFNQK 204 (224)
Q Consensus 147 Gq~f~~~~l~kI~~l~~~~~~~-~~~I~vDGGvn~~~i~~l~~~Gad~~V~G-saif~~~ 204 (224)
|++-.+..+. .+.+.++.. ...++.=|.--..-.......|-++=|.= -.+|-.+
T Consensus 181 g~~~~p~~L~---~~l~~lp~~~~w~v~~~G~~~~~~~~~A~~~GGhvRVGlEDn~~~~~ 237 (274)
T pfam05853 181 GMPADPENLL---HMLRTLPRGATWSVAGIGRNQLPLAAAAAALGGHVRVGLEDNLYLDK 237 (274)
T ss_pred CCCCCHHHHH---HHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf 8999999999---99963878971899951754449999999809964870565533789
No 367
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=74.21 E-value=7.2 Score=19.46 Aligned_cols=186 Identities=20% Similarity=0.291 Sum_probs=90.7
Q ss_pred EEECHHHHCC-CHHHHHHH---HHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEE---------------
Q ss_conf 1881706325-88999999---9999965998999973426345843417899998641256416---------------
Q gi|254780975|r 5 IQIVPSILAA-DFSRLGEE---ISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVF--------------- 65 (224)
Q Consensus 5 ~~IspSil~~-d~~~l~~~---i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~--------------- 65 (224)
.||-++|-.. |..+++.| ++...++|+|. |||=.--.++ .++-+.+-+.+.+|+
T Consensus 62 tKVNaNIGtS~~~~d~~~E~eK~~~A~~~GADt----iMDLStGGdl---~~iR~~il~~s~vpvGTVPiYqa~~~~~~~ 134 (433)
T PRK13352 62 TKVNANIGTSSDISDIEEELEKAKVAVKYGADT----IMDLSTGGDL---DEIRRAIIEASPVPVGTVPIYQAAIEAARK 134 (433)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCE----EEECCCCCCH---HHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 689711168988798899999999999829985----7865777466---999999996499886780199999999880
Q ss_pred --EE-EEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEE----------------EC-CCCHHH
Q ss_conf --85-67885120336764047760799970664215899986776498259985----------------23-334478
Q gi|254780975|r 66 --DC-HLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAI----------------NP-ETPVAI 125 (224)
Q Consensus 66 --dv-HLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai----------------~p-~T~~~~ 125 (224)
++ ++=.++-.+.+++=.+-|+|++|+|+--+.+ .+..+++.+-..|++= || .+.++.
T Consensus 135 ~~~~~~mt~d~~f~~ie~qa~~GVDfmTiH~Gi~~~---~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPlye~fD~ 211 (433)
T PRK13352 135 YGSIVDMTEDDLFDVIEKQAKDGVDFMTIHCGVTRE---TLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDY 211 (433)
T ss_pred CCCHHHCCHHHHHHHHHHHHHHCCCEEEECCCCHHH---HHHHHHHCCCCCCEECCCHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 599555999999999999997189879962022399---99999845870351315729999999974775834660999
Q ss_pred HHHHHHHCCEEEEEE--EECCCCCCCCCCHHHH---HHHHHHHHHHCCCCEEEEEC--CCCHHHHH------HHHHCCCC
Q ss_conf 998862014028998--3067765332201357---78998654313865269815--89988999------99967998
Q gi|254780975|r 126 LEDVIDEIDMILIMT--VNPGFGGQQLIESTIP---KIRQAKALIGKRSISLEVDG--GVTSRNIK------SLVQAGAD 192 (224)
Q Consensus 126 i~~~l~~~D~vliM~--V~PG~~Gq~f~~~~l~---kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~------~l~~~Gad 192 (224)
+-.++..-|..|=++ ..||.---.-...-+. -+-+|-+.-.++++...|.| -|-.+.|. +=.-.||-
T Consensus 212 lLeI~~~yDVtlSLGDglRPG~i~DA~D~aQi~EL~~lgeL~~rA~e~gVQvMvEGPGHvPl~~I~~nv~l~K~lc~~AP 291 (433)
T PRK13352 212 LLEILKEYDVTLSLGDGLRPGCIADATDRAQIQELITLGELTKRAREAGVQVMVEGPGHVPLDQIEANVKLQKELCHGAP 291 (433)
T ss_pred HHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999974936871477788754667738899999999999999998399889879998778999999999999617998
Q ss_pred EEEECHHH
Q ss_conf 99974266
Q gi|254780975|r 193 LLVVGSSF 200 (224)
Q Consensus 193 ~~V~Gsai 200 (224)
.+|+|--.
T Consensus 292 fYvLGPLv 299 (433)
T PRK13352 292 FYVLGPLV 299 (433)
T ss_pred CEECCCCC
T ss_conf 00028610
No 368
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=74.19 E-value=7.3 Score=19.46 Aligned_cols=175 Identities=17% Similarity=0.279 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHH-HCC-CCEEEEEEEEEE---CC-------HHHHHHC
Q ss_conf 88999999999996599899997342634584341789999864-125-641685678851---20-------3367640
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLR-SYS-DSVFDCHLMISS---ID-------SHINIIA 82 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~-~~t-~~~~dvHLMv~~---P~-------~~i~~~~ 82 (224)
.+.+++..++.+-++|+|.+.. -+-+++... .+. +.|+=+||=..+ |. ..+++..
T Consensus 41 gl~d~e~~v~~~~~~g~dav~~-------------~~Gi~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai 107 (265)
T COG1830 41 GLEDPENIVAKVAEAGADAVAM-------------TPGIARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDAI 107 (265)
T ss_pred CCCCHHHHHHHHHHCCCCEEEE-------------CHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEHHHHH
T ss_conf 4269999999998548998984-------------675886507553577677999646665677864311234098897
Q ss_pred CCCCCEEEEECC----C----CCCHHHHHHHHHHCCCEEEEEE---ECCCCH--HHHHHHHHH---------CCEEEEEE
Q ss_conf 477607999706----6----4215899986776498259985---233344--789988620---------14028998
Q gi|254780975|r 83 DAGCDIITFHPE----S----SPHIRRSLRTIHAMGKKTGVAI---NPETPV--AILEDVIDE---------IDMILIMT 140 (224)
Q Consensus 83 ~~g~d~i~~H~E----~----~~~~~~~i~~i~~~g~k~Giai---~p~T~~--~~i~~~l~~---------~D~vliM~ 140 (224)
..|+|-+.+|.- . ..++.++...++++|+-+-+-. +|...- +.-..+..+ .|.|-.
T Consensus 108 ~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~-- 185 (265)
T COG1830 108 RLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKT-- 185 (265)
T ss_pred HCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE--
T ss_conf 478747999996687625899999999999998709964998813587765444336899999999999865776861--
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-------HHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf 3067765332201357789986543138652698158998-------899999967998999742663789989999999
Q gi|254780975|r 141 VNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-------RNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL 213 (224)
Q Consensus 141 V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-------~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l 213 (224)
.+.|-+ ..++....-....+-+-||=.. +-...+.++|+.-++.|.-||+.++|....+.+
T Consensus 186 ---~ytg~~---------e~F~~vv~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~am~~Ai 253 (265)
T COG1830 186 ---KYTGDP---------ESFRRVVAACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAI 253 (265)
T ss_pred ---CCCCCH---------HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf ---599984---------78999997189987984798889749999999999983573033310332468869999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780975|r 214 NDL 216 (224)
Q Consensus 214 ~~l 216 (224)
...
T Consensus 254 ~~I 256 (265)
T COG1830 254 QAI 256 (265)
T ss_pred HHH
T ss_conf 999
No 369
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=73.98 E-value=7.3 Score=19.42 Aligned_cols=96 Identities=18% Similarity=0.281 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEE--EEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf 5889999999999965998999973426345843417899998641256416--85678851203367640477607999
Q gi|254780975|r 14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVF--DCHLMISSIDSHINIIADAGCDIITF 91 (224)
Q Consensus 14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~--dvHLMv~~P~~~i~~~~~~g~d~i~~ 91 (224)
+|...--++|++|+++|+|.+-+-+-|-. ..+-++.|++.++.|+ |+|.- .++.-...++|++.+-+
T Consensus 33 ~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e-------~A~A~~~Ik~~~~vPLVaDiHf~----~rla~~~~~~g~~k~RI 101 (361)
T COG0821 33 ADVEATVAQIKALERAGCDIVRVTVPDME-------AAEALKEIKQRLNVPLVADIHFD----YRLALEAAECGVDKVRI 101 (361)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCHH-------HHHHHHHHHHHCCCCEEEEEECC----HHHHHHHHHCCCCEEEE
T ss_conf 01799999999999818978999369978-------99999999984799879873056----89999756427426987
Q ss_pred ECCCCC---CHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 706642---15899986776498259985233
Q gi|254780975|r 92 HPESSP---HIRRSLRTIHAMGKKTGVAINPE 120 (224)
Q Consensus 92 H~E~~~---~~~~~i~~i~~~g~k~Giai~p~ 120 (224)
-.-... ....+++.++.+|+-.-|..|-+
T Consensus 102 NPGNig~~~~v~~vVe~Ak~~g~piRIGVN~G 133 (361)
T COG0821 102 NPGNIGFKDRVREVVEAAKDKGIPIRIGVNAG 133 (361)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 78656736779999999997599879952668
No 370
>pfam01168 Ala_racemase_N Alanine racemase, N-terminal domain.
Probab=73.42 E-value=7.6 Score=19.34 Aligned_cols=147 Identities=10% Similarity=0.060 Sum_probs=78.3
Q ss_pred HHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCC-------CH
Q ss_conf 89999864125641685678851203367640477607999706642158999867764982599852333-------44
Q gi|254780975|r 51 ADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPET-------PV 123 (224)
Q Consensus 51 ~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T-------~~ 123 (224)
.+....+|+. ..+.+++++--.+.+.+..+.+.+.... ..+.+.+....+..++.+.+..+-|.-+| +.
T Consensus 55 ~~Ea~~lr~~-~~~~~Il~l~~~~~~~~~~~~~~~~~~~---v~s~~~l~~l~~~~~~~~~~~~v~l~vdtGm~R~G~~~ 130 (216)
T pfam01168 55 LQEALELREA-GITAPILVLGFFPPEELALAAEYDLIPT---VDSLEQAEALSAAAAKLGRPLRVHLKVDTGMGRLGFTP 130 (216)
T ss_pred HHHHHHHHHH-CCCCCEEEECCCCHHHHHHHHHCCCEEE---ECCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCH
T ss_conf 9999999981-8987077736899699999998597899---78899999999999985998089999974787688799
Q ss_pred HHHHHHH-----HHCCEEEEEEEECCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 7899886-----201402899830677653-3220135778998654313865269815899889999996799899974
Q gi|254780975|r 124 AILEDVI-----DEIDMILIMTVNPGFGGQ-QLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVG 197 (224)
Q Consensus 124 ~~i~~~l-----~~~D~vliM~V~PG~~Gq-~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~G 197 (224)
+.+..++ +.+...-+||--|-.... .+...-+++.+++.+.++..+. .+=+|-+..........|.|.+=.|
T Consensus 131 ~~~~~~~~~i~~~~l~~~Gi~tH~~~~d~~~~~~~~q~~~f~~~~~~l~~~~~--~~s~~nS~~~~~~~~~~~~~~vR~G 208 (216)
T pfam01168 131 EELPALAEALALPGLRLEGLMTHFACADEPDATNRAQLARFRELADALEAAGP--VLSLGNSAALLLAPLHEGFDMVRPG 208 (216)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--EEEHHCCHHHHHHHHHCCCCEEEEC
T ss_conf 99999999985599967899950588789758999999999999998656899--9851161889853756489978307
Q ss_pred HHHHCC
Q ss_conf 266378
Q gi|254780975|r 198 SSFFNQ 203 (224)
Q Consensus 198 saif~~ 203 (224)
+++|+.
T Consensus 209 ~~lyG~ 214 (216)
T pfam01168 209 IALYGA 214 (216)
T ss_pred HHHCCC
T ss_conf 211187
No 371
>KOG3157 consensus
Probab=73.40 E-value=7.6 Score=19.33 Aligned_cols=154 Identities=18% Similarity=0.265 Sum_probs=83.5
Q ss_pred CCCHHHHHHHH-HCCCCEEEE--EEEEEECCHHHHHHCCCCCCEEEEE-CCCCCCHHHHHHHHHHC-CC----EEEEEEE
Q ss_conf 41789999864-125641685--6788512033676404776079997-06642158999867764-98----2599852
Q gi|254780975|r 48 SFGADVIRSLR-SYSDSVFDC--HLMISSIDSHINIIADAGCDIITFH-PESSPHIRRSLRTIHAM-GK----KTGVAIN 118 (224)
Q Consensus 48 ~~~~~~i~~i~-~~t~~~~dv--HLMv~~P~~~i~~~~~~g~d~i~~H-~E~~~~~~~~i~~i~~~-g~----k~Giai~ 118 (224)
.||-..+.++- +-+.+|-|+ |..-.-..+.+.++.. -+...+++ .++. ...+.++...+. |. ++-+-+|
T Consensus 56 ~FGENYVQEl~eKap~lp~DI~WHFIG~lQsnK~kkl~s-vpnL~~vetVDse-K~A~~ld~a~~k~g~~~PL~V~VQvN 133 (244)
T KOG3157 56 HFGENYVQELIEKAPLLPDDIKWHFIGHLQSNKCKKLLS-VPNLYSVETVDSE-KKARKLDSAWSKLGPDNPLKVLVQVN 133 (244)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECHHHHCCCCHHCC-CCCEEEEEECCHH-HHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 045889999998462476213265644132311001106-7864788731269-89888889999529999728999961
Q ss_pred -----------CCCCHHHHHHH---HHHCCEEEEEEEE-CCCC---CCCCCCHHHHHHHHHHHHHHCCCCE---EEEECC
Q ss_conf -----------33344789988---6201402899830-6776---5332201357789986543138652---698158
Q gi|254780975|r 119 -----------PETPVAILEDV---IDEIDMILIMTVN-PGFG---GQQLIESTIPKIRQAKALIGKRSIS---LEVDGG 177 (224)
Q Consensus 119 -----------p~T~~~~i~~~---l~~~D~vliM~V~-PG~~---Gq~f~~~~l~kI~~l~~~~~~~~~~---I~vDGG 177 (224)
|..-++..+.+ .+++.+.-+||+- +|++ |..-.-.++-++|+ ++..+.++. +++-=|
T Consensus 134 TSGEd~K~Giepse~~~l~~~i~~~c~nL~f~GlMTIGs~~~s~ss~eNpDF~~L~~~r~--~ic~~lg~~~dq~eLSMG 211 (244)
T KOG3157 134 TSGEDSKSGIEPSEAPELAEHIKSECKNLKFSGLMTIGSFDNSHSSGENPDFQVLVKLRE--SICKKLGIPADQVELSMG 211 (244)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHH--HHHHHHCCCHHHHHHHCC
T ss_conf 677544579883665999999998687634520477535666556899965799999999--999984898678100235
Q ss_pred CCHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf 99889999996799899974266378998
Q gi|254780975|r 178 VTSRNIKSLVQAGADLLVVGSSFFNQKGE 206 (224)
Q Consensus 178 vn~~~i~~l~~~Gad~~V~Gsaif~~~d~ 206 (224)
.+. .....++.|.+.+-+||.||+..++
T Consensus 212 MS~-DF~~AIe~Gst~VRvGStIFG~R~y 239 (244)
T KOG3157 212 MSA-DFLLAIEQGSTNVRVGSTIFGAREY 239 (244)
T ss_pred CCH-HHHHHHHHCCCEEEECCCCCCCCCC
T ss_conf 636-6999998088537732521267888
No 372
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=73.37 E-value=7.6 Score=19.33 Aligned_cols=109 Identities=16% Similarity=0.139 Sum_probs=61.3
Q ss_pred EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCH-HHHHHCC-
Q ss_conf 88170632588999999999996599899997342634584341789999864125641685678851203-3676404-
Q gi|254780975|r 6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDS-HINIIAD- 83 (224)
Q Consensus 6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~-~i~~~~~- 83 (224)
++.-.+...||..+.+..++-.++|+++|-+-+-.. ..-+.+.++.+-+......++-||++.+.- .++.-.+
T Consensus 15 ~~~~~i~~~d~~~i~~~A~~Q~~~GA~~LDVN~g~~-----~~de~~~M~~~v~~vq~~~~~Pl~iDS~~~~~iEaaLk~ 89 (252)
T cd00740 15 KFRELIKAEDYDEALDVARQQVEGGAQILDLNVDYG-----GLDGVSAMKWLLNLLATEPTVPLMLDSTNWEVIEAGLKC 89 (252)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCC-----CCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH
T ss_conf 999999857989999999999984998899528964-----536599999999998547899857617989999999997
Q ss_pred CCCCEEE--EECCC-CCCHHHHHHHHHHCCCE-EEEEEEC
Q ss_conf 7760799--97066-42158999867764982-5998523
Q gi|254780975|r 84 AGCDIIT--FHPES-SPHIRRSLRTIHAMGKK-TGVAINP 119 (224)
Q Consensus 84 ~g~d~i~--~H~E~-~~~~~~~i~~i~~~g~k-~Giai~p 119 (224)
++...+. +-.|- .+.+++.+..++++|+. +++++..
T Consensus 90 ~~Gr~iINSis~e~g~er~~~i~pLakkyga~vI~L~~de 129 (252)
T cd00740 90 CQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFDE 129 (252)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 6998677416344548899999999987099899995289
No 373
>PTZ00333 triosephosphate isomerase; Provisional
Probab=73.22 E-value=7.6 Score=19.31 Aligned_cols=124 Identities=17% Similarity=0.369 Sum_probs=78.3
Q ss_pred HHHHCCCCCCEEEE-EC-------CCCCCHHHHHHHHHHCCCEEEEEEECC-------CCHHH----HHHHHHHC--CE-
Q ss_conf 67640477607999-70-------664215899986776498259985233-------34478----99886201--40-
Q gi|254780975|r 78 INIIADAGCDIITF-HP-------ESSPHIRRSLRTIHAMGKKTGVAINPE-------TPVAI----LEDVIDEI--DM- 135 (224)
Q Consensus 78 i~~~~~~g~d~i~~-H~-------E~~~~~~~~i~~i~~~g~k~Giai~p~-------T~~~~----i~~~l~~~--D~- 135 (224)
..++.+.|++++.+ |. |+.+.+..-+..+.+.|..+-+.+.-. .-.+. +..+++.+ +.
T Consensus 82 a~mL~d~g~~yviiGHSERR~~f~Etd~~i~~K~~~al~~~l~pIlCIGE~~~er~~g~~~~vl~~Ql~~~~~~~~~~~~ 161 (252)
T PTZ00333 82 AEMLKDLGIEWVIIGHSERRQYFGETDEIVAQKVKNALNNGLKVILCIGETLQEREAGQTSAVLLTQLKAIAKKVKEDWD 161 (252)
T ss_pred HHHHHHCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99999869998997758989872998799999999999859979999377599886467799999999998731413232
Q ss_pred EEEEEEEC----CCCCCCCCCHHHHHH-HHHHHHHHC-------CCCEEEEECCCCHHHHHHHH-HCCCCEEEECHHHHC
Q ss_conf 28998306----776533220135778-998654313-------86526981589988999999-679989997426637
Q gi|254780975|r 136 ILIMTVNP----GFGGQQLIESTIPKI-RQAKALIGK-------RSISLEVDGGVTSRNIKSLV-QAGADLLVVGSSFFN 202 (224)
Q Consensus 136 vliM~V~P----G~~Gq~f~~~~l~kI-~~l~~~~~~-------~~~~I~vDGGvn~~~i~~l~-~~Gad~~V~Gsaif~ 202 (224)
=++..=+| | .|+.-.++-...+ +.+|+.+.+ .++.|---|+||.+|+.++. ..++|-+-+|+|=.+
T Consensus 162 ~iiIAYEPvWAIG-TG~~as~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ILYGGSVn~~Na~~i~~~~~vDG~LVGgASL~ 240 (252)
T PTZ00333 162 KVVIAYEPVWAIG-TGKVATPEQAQEVHAFIRKWLSEKVGADVAKKVRIIYGGSVNEKNCHELIKQPDIDGFLVGGASLK 240 (252)
T ss_pred CEEEEECCHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCEEEECCCCHHHHHHHHCCCCCCEEEECHHHCC
T ss_conf 4189966765358-899999999999999999999987185450677488727779999999966889997896005379
No 374
>COG0280 Pta Phosphotransacetylase [Energy production and conversion]
Probab=73.09 E-value=7.7 Score=19.29 Aligned_cols=198 Identities=17% Similarity=0.227 Sum_probs=108.6
Q ss_pred ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECC-CCCCCHHHHHHHHHCC-CCEEEEEEEE-EECCHHHHHHCC
Q ss_conf 817063258899999999999659989999734263458-4341789999864125-6416856788-512033676404
Q gi|254780975|r 7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVP-NISFGADVIRSLRSYS-DSVFDCHLMI-SSIDSHINIIAD 83 (224)
Q Consensus 7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvp-n~~~~~~~i~~i~~~t-~~~~dvHLMv-~~P~~~i~~~~~ 83 (224)
+.--++-++...+++.++. .|.+.=++.|+|-+-.+ -+.=..+.+-++++.- -.+-+++-++ .+|..+--.++.
T Consensus 38 ~~~~ilvg~~~~i~~~~~~---~gl~l~~~eiidp~~~~~~~~~y~~~~~e~~k~kG~t~~~a~~~~~~d~~~~a~~mv~ 114 (327)
T COG0280 38 LAKPILVGRPEEIEEVAKA---LGLDLDGIEIINPELDPERFEEYVDRLYELRKRKGVTPEDAQELVREDPTVFAAMMVA 114 (327)
T ss_pred CCCEEEECCHHHHHHHHHH---HCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 7752897489999999998---3546564478672227066899999999996437999999998854480899999997
Q ss_pred CC-CCEEEEECCCCC-C-HHHHHHHHHHC-CCE-EE-E---------------EEECCCCHHHHHHHHHH-CCEEEEEEE
Q ss_conf 77-607999706642-1-58999867764-982-59-9---------------85233344789988620-140289983
Q gi|254780975|r 84 AG-CDIITFHPESSP-H-IRRSLRTIHAM-GKK-TG-V---------------AINPETPVAILEDVIDE-IDMILIMTV 141 (224)
Q Consensus 84 ~g-~d~i~~H~E~~~-~-~~~~i~~i~~~-g~k-~G-i---------------ai~p~T~~~~i~~~l~~-~D~vliM~V 141 (224)
.| +|-+.-=...+. + +...++.|... |.+ ++ + ++|++-..+.+..+... ++...-|++
T Consensus 115 ~g~aD~~v~G~~~tt~~~lr~~lqii~~~pG~~~~s~v~im~~~~~~l~~~D~avn~~PtaeeladIa~~sa~~a~~fgi 194 (327)
T COG0280 115 LGEADGLVSGAVHTTADTLRPALQIIGTRPGVSLVSSVFIMLLPDGTLFFADCAVNPDPTAEELADIAENAAETARRFGI 194 (327)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 59887897557667798998899870888987667878999937960899713357897999999999999999998089
Q ss_pred ECC-----CC-CCCCCCHHHHHHHHHHHHHHCCCC-EEEEECCCCHHHHH---HHHHCCCCEEEECHH-HHCCCCHH
Q ss_conf 067-----76-533220135778998654313865-26981589988999---999679989997426-63789989
Q gi|254780975|r 142 NPG-----FG-GQQLIESTIPKIRQAKALIGKRSI-SLEVDGGVTSRNIK---SLVQAGADLLVVGSS-FFNQKGEI 207 (224)
Q Consensus 142 ~PG-----~~-Gq~f~~~~l~kI~~l~~~~~~~~~-~I~vDGGvn~~~i~---~l~~~Gad~~V~Gsa-if~~~d~~ 207 (224)
+|- |+ +..-.-...+|++++.++..+... ++.+||=+-.+.+- ...+.+.+.-|.|+| +|=-||..
T Consensus 195 ~PkVAlLS~St~gs~~~~~~~kv~ea~~i~~~~~~~dl~vDGelq~DaA~~~~va~~k~p~s~vaG~ANvlVfP~Le 271 (327)
T COG0280 195 EPKVALLSYSTFGSGKGPSTDKVREATKILRERAPPDLEVDGELQFDAALVEKVAAKKAPDSPLAGSANVLVFPDLE 271 (327)
T ss_pred CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCHHHHCCHHHHHHHCCCCCCCCCCCEEECCCCH
T ss_conf 87068997542788888107999999999971697566660675243553999999538999767877789748821
No 375
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=73.00 E-value=7.7 Score=19.27 Aligned_cols=175 Identities=17% Similarity=0.300 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHH-HC-CCCEEEEEEEEE-----EC-----CHHHHHHCC
Q ss_conf 8999999999996599899997342634584341789999864-12-564168567885-----12-----033676404
Q gi|254780975|r 16 FSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLR-SY-SDSVFDCHLMIS-----SI-----DSHINIIAD 83 (224)
Q Consensus 16 ~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~-~~-t~~~~dvHLMv~-----~P-----~~~i~~~~~ 83 (224)
+.+++..++.+.++|+|-+-. ..=.++... .+ .+.|+=+||=.. +| .-.++....
T Consensus 38 l~d~~~~i~~~~~~g~dai~~-------------~~G~~~~~~~~~~~~~~lil~l~~~t~~~~~~~~~~~~~sVeeAvr 104 (266)
T PRK07226 38 LVDMRETVNKVAEGGADAVLM-------------HKGLARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLVGTVEDAIK 104 (266)
T ss_pred CCCHHHHHHHHHHCCCCEEEE-------------CHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHEEECCHHHHHH
T ss_conf 359999999998639999996-------------7677864352215788749994377314788640101214999985
Q ss_pred CCCCEEEEECCC--------CCCHHHHHHHHHHCCCEEEEEEEC-------CCCHHHHHHHHH---H--CCEEEEEEEEC
Q ss_conf 776079997066--------421589998677649825998523-------334478998862---0--14028998306
Q gi|254780975|r 84 AGCDIITFHPES--------SPHIRRSLRTIHAMGKKTGVAINP-------ETPVAILEDVID---E--IDMILIMTVNP 143 (224)
Q Consensus 84 ~g~d~i~~H~E~--------~~~~~~~i~~i~~~g~k~Giai~p-------~T~~~~i~~~l~---~--~D~vliM~V~P 143 (224)
.|+|-+.+|.-- ..++-++...+++.|.=+-+-.-| .+..+.+....- + .|.|=+ +
T Consensus 105 lGAdaV~~~v~~Gs~~E~~~l~~l~~l~~ea~~~GlPll~~~yprG~~~~~~~d~~~ia~aaRia~ELGADiVKv---~- 180 (266)
T PRK07226 105 LGADAVSVHVNVGSETEAEMLEDLGRIARECEEWGMPLLAMMYPRGPKIKNEYDPEVVAHAARVGAELGADIIKT---N- 180 (266)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE---C-
T ss_conf 587789998547998379999999999999998599569997346887777875999999999999967998983---5-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-------HHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf 7765332201357789986543138652698158998-------899999967998999742663789989999999999
Q gi|254780975|r 144 GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-------RNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 144 G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-------~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l 216 (224)
+.| .++.+.++-+ .-...+-+-||=+. +.+....++|+.-++.|.-+|..+||....+.|..+
T Consensus 181 -y~g---d~e~f~~vv~------~~~vPVliaGG~k~~~~~~~L~~v~~ai~aGa~Gv~~GRNvfQ~~~p~~~~~al~~i 250 (266)
T PRK07226 181 -YTG---DPESFREVVE------GCPVPVVIAGGPKTGSDLEFLQMVEDAMEAGAAGVAIGRNIFQHEDPAKITRAISAV 250 (266)
T ss_pred -CCC---CHHHHHHHHH------HCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHCCCCHHHHHHHHHHH
T ss_conf -999---9899999998------479878995788889889999999999975994665261023579899999999998
Q ss_pred H
Q ss_conf 9
Q gi|254780975|r 217 K 217 (224)
Q Consensus 217 ~ 217 (224)
-
T Consensus 251 V 251 (266)
T PRK07226 251 V 251 (266)
T ss_pred H
T ss_conf 5
No 376
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=72.75 E-value=7.8 Score=19.24 Aligned_cols=21 Identities=5% Similarity=0.240 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEE
Q ss_conf 357789986543138652698
Q gi|254780975|r 154 TIPKIRQAKALIGKRSISLEV 174 (224)
Q Consensus 154 ~l~kI~~l~~~~~~~~~~I~v 174 (224)
.-+.+.++++++.+.++++.|
T Consensus 191 ~~e~~~~~~~i~~~~G~~v~I 211 (213)
T PRK10076 191 SSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999999966985884
No 377
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=72.44 E-value=8 Score=19.19 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 64215899986776498259985233
Q gi|254780975|r 95 SSPHIRRSLRTIHAMGKKTGVAINPE 120 (224)
Q Consensus 95 ~~~~~~~~i~~i~~~g~k~Giai~p~ 120 (224)
.-+++...++.+++.|.+.-+.+.|.
T Consensus 64 ~FPdp~~mi~~L~~~G~~~~~~v~P~ 89 (319)
T cd06591 64 RFPDPKAMVRELHEMNAELMISIWPT 89 (319)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf 18999999999997899899994688
No 378
>pfam02593 DUF166 Uncharacterized ArCR, COG1810.
Probab=72.20 E-value=8.1 Score=19.16 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHCCCCEEEE-------EEEEEECCHHHHHHCCCCCCEEEEECCCCCCH-HHHHHHHHHCCCEEEEEE--E
Q ss_conf 1789999864125641685-------67885120336764047760799970664215-899986776498259985--2
Q gi|254780975|r 49 FGADVIRSLRSYSDSVFDC-------HLMISSIDSHINIIADAGCDIITFHPESSPHI-RRSLRTIHAMGKKTGVAI--N 118 (224)
Q Consensus 49 ~~~~~i~~i~~~t~~~~dv-------HLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~-~~~i~~i~~~g~k~Giai--~ 118 (224)
+|-..++.|+++++.-+.+ ---+++|+.|++++.+ +|++.. +--.+|+ ......+++.|.++-|+= .
T Consensus 8 yGeR~~~~i~~~~~~~v~~~~~pe~l~e~Ie~pee~Lp~~~~--~Dl~i~-y~lhPDl~~~l~~~~~e~g~kalIvp~~~ 84 (215)
T pfam02593 8 YGERAVENILNYFDFCVIVLEYPEELPEFIEDPEEYLPEIPE--ADLVIA-YGLHPDLTLELAEIAAETGIKALIVPAEA 84 (215)
T ss_pred CHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHCCCCCC--CCEEEE-ECCCCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 028999999864894299961776464323687886566778--768999-43595079999999986499889974688
Q ss_pred CCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 3334478998862014028998306776533220135778998654313865269815899
Q gi|254780975|r 119 PETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT 179 (224)
Q Consensus 119 p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn 179 (224)
|.-....+++-++... +-+-+=+|-++=+ +.-...++++-+.+.+..+.+.|++|.-
T Consensus 85 ~~g~~~~lk~~~e~~g-~~~~~P~~~CsL~---~~~~p~i~~F~~~FG~P~~ev~v~~~~I 141 (215)
T pfam02593 85 PKGLRKGLKEQLEEFG-VEVEFPEPFCSLE---PVGNPVIDEFAERFGRPELEVEVEDGKI 141 (215)
T ss_pred CCCHHHHHHHHHHHCC-CEEECCCCCCCCC---CCCCHHHHHHHHHHCCCEEEEEECCCEE
T ss_conf 6212899999999759-7387787655788---9888669999998199669999749949
No 379
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=72.08 E-value=8.1 Score=19.14 Aligned_cols=198 Identities=13% Similarity=0.228 Sum_probs=117.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEE--CCEECCC-----------------------CCCCHHHHHHHHHCCCCEEEE
Q ss_conf 258899999999999659989999734--2634584-----------------------341789999864125641685
Q gi|254780975|r 13 AADFSRLGEEISNITKAGAKQIHFDVM--DGCFVPN-----------------------ISFGADVIRSLRSYSDSVFDC 67 (224)
Q Consensus 13 ~~d~~~l~~~i~~l~~~~~d~iHiDIm--Dg~fvpn-----------------------~~~~~~~i~~i~~~t~~~~dv 67 (224)
..|+....+.++...++|+|.+-+-.. |.-++|+ +.|+.+....+.++.+ ...+
T Consensus 12 ~Gdl~~Ak~LI~~A~~sGadaVKFQ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~kk~els~~~~~~L~~~~~-~~gi 90 (329)
T TIGR03569 12 NGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCE-SKGI 90 (329)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH-HHCC
T ss_conf 780999999999999949699993078711327811030330126898886199999871489999999999999-7299
Q ss_pred EEEEEECC-HHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHH---HHHH-----CCEEEE
Q ss_conf 67885120-33676404776079997066421589998677649825998523334478998---8620-----140289
Q gi|254780975|r 68 HLMISSID-SHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILED---VIDE-----IDMILI 138 (224)
Q Consensus 68 HLMv~~P~-~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~---~l~~-----~D~vli 138 (224)
.+++.--. +-++.+.+.|++.+=++.-...+.. .++++-+.+..+=++....| .++++. ++.. .+.+++
T Consensus 91 ~~~~s~fd~~s~~~l~~~~~~~~KIaS~d~~n~~-Li~~i~~~~kpiiiStG~s~-~~EI~~av~~~~~~~~~~~~i~ll 168 (329)
T TIGR03569 91 EFLSTPFDLESADFLEDLGVPRFKIPSGEITNAP-LLKKIARFGKPVILSTGMAT-LEEIEAAVGVLRDAGTPDSNITLL 168 (329)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCCCCHH-HHHHHHHHCCCEEEECCCCH-HHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 2998969899999998649997997923105489-99999974897899678623-999999999999748865576886
Q ss_pred EEEE--CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE-EECCCCHHHHHHHHHCCCCEEEEC----HHH-----HCCCCH
Q ss_conf 9830--6776533220135778998654313865269-815899889999996799899974----266-----378998
Q gi|254780975|r 139 MTVN--PGFGGQQLIESTIPKIRQAKALIGKRSISLE-VDGGVTSRNIKSLVQAGADLLVVG----SSF-----FNQKGE 206 (224)
Q Consensus 139 M~V~--PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~-vDGGvn~~~i~~l~~~Gad~~V~G----sai-----f~~~d~ 206 (224)
.||. |- ++..--|.+|+.+++.++ +.+. -|=..+..........||.++=-- ... .-+-+|
T Consensus 169 hC~s~YP~----~~~~~nL~~i~~lk~~f~---~~iG~SDHt~g~~~~~~Ava~GA~vIEKHfTldk~~~g~D~~~Sl~p 241 (329)
T TIGR03569 169 HCTTEYPA----PFEDVNLNAMDTLKEAFD---LPVGYSDHTLGIEAPIAAVALGATVIEKHFTLDKNLPGPDHKASLEP 241 (329)
T ss_pred EECCCCCC----CHHHCCHHHHHHHHHHCC---CCEEECCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHCCCH
T ss_conf 43788999----937647899999999859---98684797898367999998699699987776899999967870999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999978
Q gi|254780975|r 207 ISYAKRLNDLKKSA 220 (224)
Q Consensus 207 ~~~~~~l~~l~~~a 220 (224)
.+..+-++.+++..
T Consensus 242 ~e~k~lv~~i~~~~ 255 (329)
T TIGR03569 242 DELKEMVQGIRNVE 255 (329)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 380
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=71.45 E-value=8.4 Score=19.05 Aligned_cols=72 Identities=21% Similarity=0.424 Sum_probs=45.0
Q ss_pred EEEEE-CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC----------CCCHHHHHHHHHCCCCEEEE----------
Q ss_conf 99830-6776533220135778998654313865269815----------89988999999679989997----------
Q gi|254780975|r 138 IMTVN-PGFGGQQLIESTIPKIRQAKALIGKRSISLEVDG----------GVTSRNIKSLVQAGADLLVV---------- 196 (224)
Q Consensus 138 iM~V~-PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG----------Gvn~~~i~~l~~~Gad~~V~---------- 196 (224)
+.+++ +-..|.-+ .++-+++++++..++++.+.+|| |+...++ ..|+|.+..
T Consensus 130 lv~ient~e~G~v~---~~~el~~i~~~a~~~gl~lH~DGARl~nA~~a~g~~~~~~----~~~~Dsvs~~~sKglgap~ 202 (338)
T cd06502 130 LVSLENTTEGGTVY---PLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTY----KSGVDSVSFCLSKGGGAPV 202 (338)
T ss_pred EEEEEECCCCCEEC---CHHHHHHHHHHHHHCCCEEEECCCCEECEEECCCCCHHHH----HHHCCEEEEECCCCCCCCC
T ss_conf 79987312896312---7999999999999749726653653004454159998998----6418789996656677743
Q ss_pred CHHHHCCCCHHHHHHHHHHH
Q ss_conf 42663789989999999999
Q gi|254780975|r 197 GSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 197 Gsaif~~~d~~~~~~~l~~l 216 (224)
||-++++++.++.++++++.
T Consensus 203 gavl~g~~~~i~~a~~~rK~ 222 (338)
T cd06502 203 GAVVVGNRDFIARARRRRKQ 222 (338)
T ss_pred CEEEECCHHHHHHHHHHHHH
T ss_conf 24787788999999999986
No 381
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=71.28 E-value=8.5 Score=19.02 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEE--EEEE
Q ss_conf 889999999999965998999973426345843417899998641-256416--8567
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVF--DCHL 69 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~--dvHL 69 (224)
|...--+++.+|.++|++.+-+-+-|-.-+.++. .+.+++++ ..+.|+ |+|.
T Consensus 43 D~~atv~Qi~~l~~aGceiVRvtvp~~~~A~al~---~I~~~l~~~~~~iPlvADIHF 97 (606)
T PRK00694 43 DVDGTVRQICALQEHGCDIVRVTVQGIKEAQACE---HIKERLIQQGISIPLVADIHF 97 (606)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH---HHHHHHHHCCCCCCEEEECCC
T ss_conf 6899999999999859998998779999998699---999998636999998866688
No 382
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=70.90 E-value=3.4 Score=21.56 Aligned_cols=141 Identities=19% Similarity=0.309 Sum_probs=92.7
Q ss_pred CHHHHHHHHH-CCCCEEEEEE-------EEEECCHHHHHH----CCCCCCEEEEECCCCCCHHH---HHHHHHHCCCEEE
Q ss_conf 7899998641-2564168567-------885120336764----04776079997066421589---9986776498259
Q gi|254780975|r 50 GADVIRSLRS-YSDSVFDCHL-------MISSIDSHINII----ADAGCDIITFHPESSPHIRR---SLRTIHAMGKKTG 114 (224)
Q Consensus 50 ~~~~i~~i~~-~t~~~~dvHL-------Mv~~P~~~i~~~----~~~g~d~i~~H~E~~~~~~~---~i~~i~~~g~k~G 114 (224)
+++.++.||+ .+|+|+--=| +++.|.+.|+.| .++|.|+.=+ ..+.+.+++ -+..+++.|.-+-
T Consensus 611 PWeRL~~lR~~vPN~lfQMLLRgANaVGYtnYPDNvv~~Fv~qa~~~GiD~FRv-FDsLN~l~~l~l~~dAv~~~gkv~E 689 (1169)
T TIGR01235 611 PWERLEDLRKEVPNILFQMLLRGANAVGYTNYPDNVVKKFVKQAAQSGIDIFRV-FDSLNWLENLKLGMDAVKEAGKVVE 689 (1169)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEC-CCCCCCCCCCHHHHHHHHHCCCEEE
T ss_conf 379999998546852468887541000024775348999999888468307870-0111332102016367775099799
Q ss_pred EEE-------ECCCCHHHHHHHHHHCCEEE-----EEEEE--CCCCCCCCCC-HHHHHHHHHHHHHHCCCCEEEE----E
Q ss_conf 985-------23334478998862014028-----99830--6776533220-1357789986543138652698----1
Q gi|254780975|r 115 VAI-------NPETPVAILEDVIDEIDMIL-----IMTVN--PGFGGQQLIE-STIPKIRQAKALIGKRSISLEV----D 175 (224)
Q Consensus 115 iai-------~p~T~~~~i~~~l~~~D~vl-----iM~V~--PG~~Gq~f~~-~~l~kI~~l~~~~~~~~~~I~v----D 175 (224)
-|| +|.-+=-.|++|.+..+-+- ++||. .|- +-| .+-..|.-||+..| +++|.+ =
T Consensus 690 AAicYtGDil~~~r~KYdL~YYt~lA~eL~~aGaHIL~iKDMAGl----LKP~AAk~L~~ALre~~P--D~PiH~HTHDt 763 (1169)
T TIGR01235 690 AAICYTGDILDPARKKYDLKYYTNLAEELVKAGAHILGIKDMAGL----LKPAAAKLLIKALREKIP--DLPIHLHTHDT 763 (1169)
T ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHCC----CHHHHHHHHHHHHHHCCC--CCCEEEECCCC
T ss_conf 997520032688897437788999999999709803430101124----428999999999973279--98568626661
Q ss_pred CCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 5899889999996799899974
Q gi|254780975|r 176 GGVTSRNIKSLVQAGADLLVVG 197 (224)
Q Consensus 176 GGvn~~~i~~l~~~Gad~~V~G 197 (224)
-|.---+...+.+||||++=+-
T Consensus 764 SG~ava~~~aaveAGvDvvDvA 785 (1169)
T TIGR01235 764 SGAAVASMLAAVEAGVDVVDVA 785 (1169)
T ss_pred HHHHHHHHHHHHHCCCCEEHHH
T ss_conf 2689999999987588611456
No 383
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=70.56 E-value=8.8 Score=18.92 Aligned_cols=138 Identities=14% Similarity=0.198 Sum_probs=78.9
Q ss_pred EEEEEE-CCHHHHHH-------CCCCCCEEEEECCCCC--------------------------CHHHHHHHHHHC-CC-
Q ss_conf 678851-20336764-------0477607999706642--------------------------158999867764-98-
Q gi|254780975|r 68 HLMISS-IDSHINII-------ADAGCDIITFHPESSP--------------------------HIRRSLRTIHAM-GK- 111 (224)
Q Consensus 68 HLMv~~-P~~~i~~~-------~~~g~d~i~~H~E~~~--------------------------~~~~~i~~i~~~-g~- 111 (224)
|-|+.+ -++.++.| .++|.|-|-+|.-... -+.++++.||+. |.
T Consensus 129 ~~mt~eeI~~ii~~f~~AA~~A~~AGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~EIi~~Ir~~vg~~ 208 (343)
T cd04734 129 KAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPD 208 (343)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 44899999999999999999999739988984457774699846985589967679888999899999999999981987
Q ss_pred -EEEEEEECCC------CHHHH---HHHHHH---CCEEEEEEEECC-CCCC-----C-CCC--HHHHHHHHHHHHHHCCC
Q ss_conf -2599852333------44789---988620---140289983067-7653-----3-220--13577899865431386
Q gi|254780975|r 112 -KTGVAINPET------PVAIL---EDVIDE---IDMILIMTVNPG-FGGQ-----Q-LIE--STIPKIRQAKALIGKRS 169 (224)
Q Consensus 112 -k~Giai~p~T------~~~~i---~~~l~~---~D~vliM~V~PG-~~Gq-----~-f~~--~~l~kI~~l~~~~~~~~ 169 (224)
-+|+=+++.. ..++. .+.|.. +|++.+=+.... ..+. + ..+ ..++-.+++|+ ..+
T Consensus 209 f~i~~Ris~~~~~~~g~~~~e~~~~~~~l~~~G~vD~l~vs~g~~~~~~~~~~~~p~~~~~~g~~~~~a~~ik~---~~~ 285 (343)
T cd04734 209 FIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQ---AVD 285 (343)
T ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHH---HCC
T ss_conf 76158867623568989989999999999966997689965675433222110068766776434889999999---729
Q ss_pred CEEEEECCC-CHHHHHHHHHCC-CCEEEECHHHHCCCCHHH
Q ss_conf 526981589-988999999679-989997426637899899
Q gi|254780975|r 170 ISLEVDGGV-TSRNIKSLVQAG-ADLLVVGSSFFNQKGEIS 208 (224)
Q Consensus 170 ~~I~vDGGv-n~~~i~~l~~~G-ad~~V~Gsaif~~~d~~~ 208 (224)
..+.+-||+ +.+.+.++++.| +|.+..|..+.-+||...
T Consensus 286 ~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ladPd~v~ 326 (343)
T cd04734 286 LPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVA 326 (343)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHCCCHHH
T ss_conf 85999799899999999998799621697899997811999
No 384
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=70.39 E-value=8.9 Score=18.90 Aligned_cols=74 Identities=20% Similarity=0.434 Sum_probs=49.1
Q ss_pred CCEEEEEEEE-CCCC----CCCCCCHHHHHHHHHHHHHH-----CCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHH--
Q ss_conf 1402899830-6776----53322013577899865431-----3865269815899889999996799899974266--
Q gi|254780975|r 133 IDMILIMTVN-PGFG----GQQLIESTIPKIRQAKALIG-----KRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSF-- 200 (224)
Q Consensus 133 ~D~vliM~V~-PG~~----Gq~f~~~~l~kI~~l~~~~~-----~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai-- 200 (224)
-+++.+.+-+ -|.+ |..+...=+.-+.++..+-. +.++.+..+|+=..+.++.|.+.|+.+++.|+-+
T Consensus 84 ~~~vv~i~sd~~G~GddeLG~~Lmk~Fl~tL~e~~~lP~~iif~N~GVkLt~~~s~~le~Lk~Le~~GVeIl~CGtCLd~ 163 (194)
T TIGR03527 84 GKLVVVITSDKLGEGDEELGRILMKGFIYTLSELDPLPKRILFVNGGVKLTTEGSEVLEDLKELEKKGVEILSCGTCLDF 163 (194)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCHHHHHHHHHHHCCCEEEECHHHHHH
T ss_conf 88899994576778808999999999999987356677789998483799518972799999999879989986315866
Q ss_pred HCCCCH
Q ss_conf 378998
Q gi|254780975|r 201 FNQKGE 206 (224)
Q Consensus 201 f~~~d~ 206 (224)
|+-.|.
T Consensus 164 y~L~dk 169 (194)
T TIGR03527 164 YGLKDK 169 (194)
T ss_pred HCCCCC
T ss_conf 285100
No 385
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=70.13 E-value=9 Score=18.87 Aligned_cols=139 Identities=15% Similarity=0.111 Sum_probs=78.4
Q ss_pred EEEEEEEC-CHHHHHH-------CCCCCCEEEEECCC-----------C-----------C----CHHHHHHHHHHC-CC
Q ss_conf 56788512-0336764-------04776079997066-----------4-----------2----158999867764-98
Q gi|254780975|r 67 CHLMISSI-DSHINII-------ADAGCDIITFHPES-----------S-----------P----HIRRSLRTIHAM-GK 111 (224)
Q Consensus 67 vHLMv~~P-~~~i~~~-------~~~g~d~i~~H~E~-----------~-----------~----~~~~~i~~i~~~-g~ 111 (224)
.|-|+.+= ...++.| .++|.|-|-+|.-+ + + -+.++++.+|+. |-
T Consensus 137 ~r~mt~~eI~~ii~~f~~AA~rA~~AGfDgVEIHaahGYLl~qFlSp~~N~RtDeYGGS~enR~Rf~~Eii~aVr~~vg~ 216 (370)
T cd02929 137 AREMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGD 216 (370)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 86689999999999999999999985989899771135599973477457877746898899989999999999997199
Q ss_pred --EEEEEEECCC--------CHHHHHHHHH----HCCEEEEEEEECC-CCCC-CCCCH--HHHHHHHHHHHHHCCCCEEE
Q ss_conf --2599852333--------4478998862----0140289983067-7653-32201--35778998654313865269
Q gi|254780975|r 112 --KTGVAINPET--------PVAILEDVID----EIDMILIMTVNPG-FGGQ-QLIES--TIPKIRQAKALIGKRSISLE 173 (224)
Q Consensus 112 --k~Giai~p~T--------~~~~i~~~l~----~~D~vliM~V~PG-~~Gq-~f~~~--~l~kI~~l~~~~~~~~~~I~ 173 (224)
-+|+=++++. ..+....++. .+|++.+-....+ ..+. .|.+. .++-.+.+|+. .+..+.
T Consensus 217 df~i~~R~s~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~vs~g~~~~~~~~~~~~~~g~~~~~~~~ik~~---~~~Pvi 293 (370)
T cd02929 217 DCAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQV---TSKPVV 293 (370)
T ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCCEE
T ss_conf 87599998941256889998889999999997365797998855556656777767864365999999986---088089
Q ss_pred EECCCC-HHHHHHHHHCC-CCEEEECHHHHCCCCHHH
Q ss_conf 815899-88999999679-989997426637899899
Q gi|254780975|r 174 VDGGVT-SRNIKSLVQAG-ADLLVVGSSFFNQKGEIS 208 (224)
Q Consensus 174 vDGGvn-~~~i~~l~~~G-ad~~V~Gsaif~~~d~~~ 208 (224)
+=||++ .+.+.++++.| +|.+..|..++-+||...
T Consensus 294 ~vG~i~~p~~ae~~l~~G~aD~V~~gR~llaDPd~~~ 330 (370)
T cd02929 294 GVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPK 330 (370)
T ss_pred EECCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHH
T ss_conf 9789799999999998799426453479876953999
No 386
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=69.90 E-value=9.1 Score=18.83 Aligned_cols=126 Identities=21% Similarity=0.298 Sum_probs=70.1
Q ss_pred EEECCHHHHHHCCCCCCEEEEECCCCC-----CHHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHHHCC--EEEEEEE-
Q ss_conf 851203367640477607999706642-----158999867764982-5998523334478998862014--0289983-
Q gi|254780975|r 71 ISSIDSHINIIADAGCDIITFHPESSP-----HIRRSLRTIHAMGKK-TGVAINPETPVAILEDVIDEID--MILIMTV- 141 (224)
Q Consensus 71 v~~P~~~i~~~~~~g~d~i~~H~E~~~-----~~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~~~D--~vliM~V- 141 (224)
..-|..+++.+..+|.|.+++==.++- -+.++++.+++.|+. +|..-+. -+...+.+-.++ .|-+++.
T Consensus 59 f~~~~~~~~~L~~~G~d~~slANNH~~D~G~~Gl~~Ti~~L~~~gi~~~G~g~~~---~~a~~p~~~~~~g~~va~l~~t 135 (239)
T smart00854 59 FRAPPENAAALKAAGFDVVSLANNHSLDYGEEGLLDTLAALDAAGIAHVGAGRNL---AEARKPAIVEVKGIKIALLAYT 135 (239)
T ss_pred ECCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCH---HHCCCCEEEEECCEEEEEEEEE
T ss_conf 0299999999998299989931763431208999999999998699615898995---7737828999899899999987
Q ss_pred ---ECCCC------CCC-CCCHHHHHH-HHHHHHHHCCCCE-EEEECCCC---------HHHHHHHHHCCCCEEEECHH
Q ss_conf ---06776------533-220135778-9986543138652-69815899---------88999999679989997426
Q gi|254780975|r 142 ---NPGFG------GQQ-LIESTIPKI-RQAKALIGKRSIS-LEVDGGVT---------SRNIKSLVQAGADLLVVGSS 199 (224)
Q Consensus 142 ---~PG~~------Gq~-f~~~~l~kI-~~l~~~~~~~~~~-I~vDGGvn---------~~~i~~l~~~Gad~~V~Gsa 199 (224)
++++. |.. ..+...+++ +++++++.+.++. +.+-.|.. .+.+..+.++|||.++....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~k~~~D~vIv~~HwG~E~~~~p~~~q~~~a~~lid~GaD~IiGhHp 214 (239)
T smart00854 136 YGTNNGWAASKDRPGVALLPDLDREKILADIARARKKADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHP 214 (239)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 0778864377899871215701799999999988527999999930157787799999999999999769999992899
No 387
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=69.48 E-value=9.3 Score=18.78 Aligned_cols=155 Identities=13% Similarity=0.121 Sum_probs=94.9
Q ss_pred HHHHHHHHCC--CCEEEEEEEEEECCHHHHHHCC---CCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHH
Q ss_conf 9999864125--6416856788512033676404---7760799970664215899986776498259985233344789
Q gi|254780975|r 52 DVIRSLRSYS--DSVFDCHLMISSIDSHINIIAD---AGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAIL 126 (224)
Q Consensus 52 ~~i~~i~~~t--~~~~dvHLMv~~P~~~i~~~~~---~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i 126 (224)
+.++.+++.. ..++.+-....+++..+++-.+ .-.+.+.+-.-.+..=.+.++.+++.|+++-+..- .|.-..+
T Consensus 42 ~~l~~i~~~i~~~~~ls~qv~~~d~~~mi~~a~~i~~~~~~nv~VKIP~t~~Glkai~~L~~~gi~vn~Tav-fs~~Qa~ 120 (222)
T PRK12656 42 ERIREVREIIGDEASIHVQVVAQDYEGILKDAAEIRRQCGDDVYIKVPVTPAGLAAIKTLKAEGYHITATAI-YTTFQGL 120 (222)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-CCHHHHH
T ss_conf 999999998299988899976398999999999999855767899668878899999999975986568872-7999999
Q ss_pred HHHHHHCCEEEEEEE---ECCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCHHHHHHHHHCCCCEEEECHHH-
Q ss_conf 988620140289983---06776533220135778998654313865--269815899889999996799899974266-
Q gi|254780975|r 127 EDVIDEIDMILIMTV---NPGFGGQQLIESTIPKIRQAKALIGKRSI--SLEVDGGVTSRNIKSLVQAGADLLVVGSSF- 200 (224)
Q Consensus 127 ~~~l~~~D~vliM~V---~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~--~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai- 200 (224)
.-...-.+||-...- +-|.. ..+-|+++++.+.+++. +|-+--==|.+++.++..+|+|.+.+...+
T Consensus 121 ~Aa~aGA~yvsPf~GRi~d~G~D-------g~~~i~~i~~~~~~~~~~tkIL~ASiR~~~~v~~a~~~G~d~iTipp~v~ 193 (222)
T PRK12656 121 LAIEAGADYLAPYYNRMENLNID-------SEAVIGQLAEAINRENSNSKILAASFKNVAQVNKAFALGAQAVTAGPDVF 193 (222)
T ss_pred HHHHCCCCEEEECCCCHHHCCCC-------CHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCHHHH
T ss_conf 99986998999714648754999-------28999999999985599961986526899999999986999998599999
Q ss_pred ---HCCCCHHHHHHHHH
Q ss_conf ---37899899999999
Q gi|254780975|r 201 ---FNQKGEISYAKRLN 214 (224)
Q Consensus 201 ---f~~~d~~~~~~~l~ 214 (224)
|..+-..+..+.+.
T Consensus 194 ~~l~~hp~T~~~~~~F~ 210 (222)
T PRK12656 194 EAAFAMPSIQKAVDDFG 210 (222)
T ss_pred HHHHCCCCHHHHHHHHH
T ss_conf 99974901799999999
No 388
>KOG0538 consensus
Probab=68.67 E-value=9.6 Score=18.67 Aligned_cols=111 Identities=16% Similarity=0.207 Sum_probs=68.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 79997066421589998677649825998523334478998862014028998306776533220135778998654313
Q gi|254780975|r 88 IITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGK 167 (224)
Q Consensus 88 ~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~ 167 (224)
++.-....+-..+ .|+|+|+.---+-+.=.--|--+...-.-.-++.|.+ + |-|--.+.+.+.+++-+.|+-+....
T Consensus 201 ~~~~~id~Sl~W~-Di~wLr~~T~lPIvvKGilt~eDA~~Ave~G~~GIIV-S-NHGgRQlD~vpAtI~~L~Evv~aV~~ 277 (363)
T KOG0538 201 YVSSQIDPSLSWK-DIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIV-S-NHGGRQLDYVPATIEALPEVVKAVEG 277 (363)
T ss_pred HHHCCCCCCCCHH-HHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEE-E-CCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 6423788777742-4699985275876998311438799999808865998-5-78753257664118879999998628
Q ss_pred CCCEEEEECCCCHHH-HHHHHHCCCCEEEECH-HHHC
Q ss_conf 865269815899889-9999967998999742-6637
Q gi|254780975|r 168 RSISLEVDGGVTSRN-IKSLVQAGADLLVVGS-SFFN 202 (224)
Q Consensus 168 ~~~~I~vDGGvn~~~-i~~l~~~Gad~~V~Gs-aif~ 202 (224)
.+++..||||+..| +-+....||..+-+|. .+|+
T Consensus 278 -ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~g 313 (363)
T KOG0538 278 -RIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWG 313 (363)
T ss_pred -CEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCEEE
T ss_conf -547997267335427999985167368856721020
No 389
>TIGR00433 bioB biotin synthase; InterPro: IPR002684 Biotin synthase 2.8.1.6 from EC works with flavodoxin, S-adenosylmethionine, and possibly cysteine to catalyze the last step of the biotin biosynthetic pathway. The reaction consists of the introduction of a sulphur atom into dethiobiotin, thus requiring activation of C-H bonds . Biotin (vitamin H) is a prosthetic group in enzymes catalysing carboxylation and transcarboxylation reactions . Biotin synthase from Escherichia coli is a homodimer of 76 kDa, with each polypeptide chain carrying an oxygen-sensitive (4Fe-4S) cluster, probably ligated by three cysteines of a CXXXCXXC box conserved among all known BioB sequences and a fourth still not identified ligand. BioB displays a pyridoxal phosphate-dependent cysteine desulphurase activity, which allows mobilization of the sulphur atom from free cysteine . ; GO: 0004076 biotin synthase activity, 0009102 biotin biosynthetic process.
Probab=68.53 E-value=7.1 Score=19.51 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=75.5
Q ss_pred HHHHHHCCCCCCEEEEECC-CC-------------CCHHHHHHHHHHCCCEE--EEEEECCCCHHHHHHHH-------HH
Q ss_conf 3367640477607999706-64-------------21589998677649825--99852333447899886-------20
Q gi|254780975|r 76 SHINIIADAGCDIITFHPE-SS-------------PHIRRSLRTIHAMGKKT--GVAINPETPVAILEDVI-------DE 132 (224)
Q Consensus 76 ~~i~~~~~~g~d~i~~H~E-~~-------------~~~~~~i~~i~~~g~k~--Giai~p~T~~~~i~~~l-------~~ 132 (224)
...+.+.+||.|+..==.| +. +|=..+++.+|+.|.++ |=-+..+=+.++-..++ +.
T Consensus 167 eqa~~LKdAGld~YNHNl~~TS~~~y~~I~sThty~DR~~T~~~~k~aGl~~CsGGI~GlgEt~~DrI~l~~~L~~L~p~ 246 (350)
T TIGR00433 167 EQAKQLKDAGLDRYNHNLDETSQEYYSKIISTHTYDDRVDTVKNAKEAGLKVCSGGILGLGETWEDRIGLALALANLSPE 246 (350)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCC
T ss_conf 99998886388611167367878766873432307767999999997388724462345898889999999997527767
Q ss_pred CCE--EEEEE---EEC----CCC--CCCCCC-HHHHHHHHHHHHHHCCCCEEEEECC--CCHHHHHH----HHHCCCCEE
Q ss_conf 140--28998---306----776--533220-1357789986543138652698158--99889999----996799899
Q gi|254780975|r 133 IDM--ILIMT---VNP----GFG--GQQLIE-STIPKIRQAKALIGKRSISLEVDGG--VTSRNIKS----LVQAGADLL 194 (224)
Q Consensus 133 ~D~--vliM~---V~P----G~~--Gq~f~~-~~l~kI~~l~~~~~~~~~~I~vDGG--vn~~~i~~----l~~~Gad~~ 194 (224)
+|- |.++- ++| =.. -++.++ +.+.-|.-+|-..|+.- |-+-|| ++.....+ +..+|+|.+
T Consensus 247 peSvPiN~L~~~~GTP~~E~L~~~~~~~L~~~~~Lk~iA~ari~mP~~~--iRlagGR~~~m~e~~~kea~~~~ag~Nsi 324 (350)
T TIGR00433 247 PESVPINFLVKIEGTPAYEKLADGEVKKLSADDALKTIALARIIMPKAE--IRLAGGREVNMKELQQKEAMCFMAGANSI 324 (350)
T ss_pred CCEECCCCEECCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 8701113202688885344315888673388999999999886543110--01002514504767548999999842123
Q ss_pred EECHHHHCCCCHH
Q ss_conf 9742663789989
Q gi|254780975|r 195 VVGSSFFNQKGEI 207 (224)
Q Consensus 195 V~Gsaif~~~d~~ 207 (224)
++|-++-....+.
T Consensus 325 f~G~yLtT~g~~~ 337 (350)
T TIGR00433 325 FVGDYLTTTGQPP 337 (350)
T ss_pred EECCCCCCCCCCC
T ss_conf 0464002486588
No 390
>pfam07722 Peptidase_C26 Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus.
Probab=68.13 E-value=9.9 Score=18.60 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=38.0
Q ss_pred HHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEE----EECCCCCCCCCCH
Q ss_conf 998677649825998523334478998862014028998----3067765332201
Q gi|254780975|r 102 SLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMT----VNPGFGGQQLIES 153 (224)
Q Consensus 102 ~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~----V~PG~~Gq~f~~~ 153 (224)
-++++...|..+ +.|-+.++.+.++.+++.+|-+++-+ |+|.+.|+...+.
T Consensus 29 Yv~~i~~aGg~p-v~iP~~~~~~~~~~~l~~~dGlll~GG~~di~P~~yg~~~~~~ 83 (219)
T pfam07722 29 YVKAVEGAGGLP-VLLPILEDPEDLEALLDLVDGLLLTGGQSNVDPSLYGEEPSPS 83 (219)
T ss_pred HHHHHHHCCCEE-EEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 999999859999-9978999989999999767989985988767822146776866
No 391
>pfam01964 ThiC ThiC family. ThiC is found within the thiamine biosynthesis operon. ThiC is involved in pyrimidine biosynthesis. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.
Probab=68.01 E-value=9.9 Score=18.59 Aligned_cols=186 Identities=21% Similarity=0.275 Sum_probs=90.5
Q ss_pred EEECHHH----HCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEE----------EE--
Q ss_conf 1881706----3258899999999999659989999734263458434178999986412564168----------56--
Q gi|254780975|r 5 IQIVPSI----LAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD----------CH-- 68 (224)
Q Consensus 5 ~~IspSi----l~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~d----------vH-- 68 (224)
.||-++| .+.|...=.+.++...++|+|. |||=.--.++ .++-+.+-+.+..|+- .|
T Consensus 60 tKVNaNIGtS~~~~d~~~E~~K~~~A~~~GADt----vMDLStGgdl---~~iR~~il~~s~vpvGTVPiYqa~~~~~~~ 132 (421)
T pfam01964 60 TKVNANIGTSADISDIDEEVEKAKVAIKYGADT----VMDLSTGGDL---DEIRRAILENSPVPVGTVPIYQAAERKGGS 132 (421)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCE----EEECCCCCCH---HHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
T ss_conf 589602268988798899999999999839985----7765777466---999999997399867761499999996599
Q ss_pred EEEEECCH---HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEE----------------EC-CCCHHHHHH
Q ss_conf 78851203---36764047760799970664215899986776498259985----------------23-334478998
Q gi|254780975|r 69 LMISSIDS---HINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAI----------------NP-ETPVAILED 128 (224)
Q Consensus 69 LMv~~P~~---~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai----------------~p-~T~~~~i~~ 128 (224)
+.-.+++. .+++=.+-|+|++|+|+--+.+ .+..+++.+-..|++= || .+.++.+-.
T Consensus 133 ~~~mt~d~~~~~ie~qa~~GVDfmTiH~Gi~~~---~~~~~~~~~R~~giVSRGGs~la~WM~~n~~ENPlye~fD~lle 209 (421)
T pfam01964 133 VVDMTEDDLFDVIEEQAKDGVDFMTIHAGVTRE---TLERLKRSGRLTGIVSRGGSFLAAWMLHNGKENPLYEHFDYLLE 209 (421)
T ss_pred HHHCCHHHHHHHHHHHHHHCCCEEEECCCHHHH---HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 454999999999999997288778740001599---99999745873460146628999999974765834660999999
Q ss_pred HHHHCCEEEEEE--EECCCCCCCCCCHHHH---HHHHHHHHHHCCCCEEEEEC--CCCHHHH----HHH--HHCCCCEEE
Q ss_conf 862014028998--3067765332201357---78998654313865269815--8998899----999--967998999
Q gi|254780975|r 129 VIDEIDMILIMT--VNPGFGGQQLIESTIP---KIRQAKALIGKRSISLEVDG--GVTSRNI----KSL--VQAGADLLV 195 (224)
Q Consensus 129 ~l~~~D~vliM~--V~PG~~Gq~f~~~~l~---kI~~l~~~~~~~~~~I~vDG--Gvn~~~i----~~l--~~~Gad~~V 195 (224)
++..-|..+=++ ..||.---.-...-+. -+-+|-+.-.++++...|.| -|-.+.| +.. .-.||-.+|
T Consensus 210 I~~~yDVtlSLGDglRPG~i~Da~D~aQ~~El~~lgeL~~rA~e~gVQvMVEGPGHvPl~qI~~nv~l~K~lc~~APfYv 289 (421)
T pfam01964 210 ILKEYDVTLSLGDGLRPGCIADATDRAQIQELITLGELTKRAWEAGVQVMIEGPGHVPLNQIEANVKLQKELCHGAPFYV 289 (421)
T ss_pred HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99974926860477798753568718899999999999999998199889879997778999999999998617998010
Q ss_pred ECHHH
Q ss_conf 74266
Q gi|254780975|r 196 VGSSF 200 (224)
Q Consensus 196 ~Gsai 200 (224)
+|--+
T Consensus 290 LGPLv 294 (421)
T pfam01964 290 LGPLV 294 (421)
T ss_pred CCCCC
T ss_conf 28610
No 392
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=67.09 E-value=10 Score=18.47 Aligned_cols=156 Identities=11% Similarity=0.052 Sum_probs=96.8
Q ss_pred HHHHHHHHHCC--CCEEEEEEEEEECCHHHHHHC---CCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHH
Q ss_conf 89999864125--641685678851203367640---4776079997066421589998677649825998523334478
Q gi|254780975|r 51 ADVIRSLRSYS--DSVFDCHLMISSIDSHINIIA---DAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAI 125 (224)
Q Consensus 51 ~~~i~~i~~~t--~~~~dvHLMv~~P~~~i~~~~---~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~ 125 (224)
.+.++.+++.. +.++.+-....+++..+++-. ..+. .+.+-.-.+.+-.+.++.+++.|+++-+..- .|+-..
T Consensus 40 ~~~~~~i~~~~~~~~~l~~ev~~~d~~~m~~~a~~l~~~~~-~ivVKIP~t~~Gl~ai~~L~~~gi~vn~Tav-ys~~Qa 117 (220)
T PRK12655 40 WEVLPRLQKAIGGEGILFAQTMSRDAQGMVEEAKRLRNAIP-GIVVKIPVTAEGLAAIKKLKKEGIPTLGTAV-YSAAQG 117 (220)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCC-CEEEECCCCHHHHHHHHHHHHCCCCEEEEEC-CCHHHH
T ss_conf 99999999982899978999955999999999999997478-7399868877899999999986997899851-789999
Q ss_pred HHHHHHHCCEEEEEEE---ECCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 9988620140289983---06776533220135778998654313865--269815899889999996799899974266
Q gi|254780975|r 126 LEDVIDEIDMILIMTV---NPGFGGQQLIESTIPKIRQAKALIGKRSI--SLEVDGGVTSRNIKSLVQAGADLLVVGSSF 200 (224)
Q Consensus 126 i~~~l~~~D~vliM~V---~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~--~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai 200 (224)
+---..-.+||-.-.- +-|.. .++-|+++++++...++ +|-+--==|.+++.++..+|+|.+.+.-.+
T Consensus 118 ~~Aa~aGA~YvsPyvGR~~d~G~D-------g~~~i~~i~~~~~~~~~~tkILaASiR~~~~v~~a~~~Gad~vTipp~v 190 (220)
T PRK12655 118 LLAALAGAKYVAPYVNRVDAQGGD-------GIRMVQELQTLLEMHAPESMVLAASFKTPRQALDCLLAGCQSITLPLDV 190 (220)
T ss_pred HHHHHCCCCEEEEEHHHHHHCCCC-------HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECHHH
T ss_conf 999985997896321057555898-------4899999999999759996899983899999999998699999819999
Q ss_pred ----HCCCCHHHHHHHHHH
Q ss_conf ----378998999999999
Q gi|254780975|r 201 ----FNQKGEISYAKRLND 215 (224)
Q Consensus 201 ----f~~~d~~~~~~~l~~ 215 (224)
|+.+-.....+.+.+
T Consensus 191 ~~~l~~~plT~~~~~~F~~ 209 (220)
T PRK12655 191 AQQMLNTPAVESAIEKFEQ 209 (220)
T ss_pred HHHHHCCCHHHHHHHHHHH
T ss_conf 9999769028999999999
No 393
>pfam03102 NeuB NeuB family. NeuB is the prokaryotic N-acetylneuraminic acid (Neu5Ac) synthase. It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesize the 9-phosphate form, Neu5Ac-9-P, and utilize ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.
Probab=66.98 E-value=10 Score=18.45 Aligned_cols=190 Identities=14% Similarity=0.207 Sum_probs=108.6
Q ss_pred HHHHHHCCCCEEEEEEEC--CEEC-----------------------CCCCCCHHHHHHHHHCCCCEEEEEEEEEECC-H
Q ss_conf 999996599899997342--6345-----------------------8434178999986412564168567885120-3
Q gi|254780975|r 23 ISNITKAGAKQIHFDVMD--GCFV-----------------------PNISFGADVIRSLRSYSDSVFDCHLMISSID-S 76 (224)
Q Consensus 23 i~~l~~~~~d~iHiDImD--g~fv-----------------------pn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~-~ 76 (224)
|+...++|+|.+-+-.-+ .-+. ..+.|+.+..+.|+++.+ ...+.+|+.--. +
T Consensus 2 I~~Ak~sGADaVKFQ~~~~d~~~~~~~~~~~y~~~~~~~~~~~~e~~kk~els~~~~~~l~~~~k-k~gi~f~~t~fd~~ 80 (240)
T pfam03102 2 IDAAAEAGADAVKFQTFTADTLVSKNADKADYQIKNTWGGESQYELLKKLELPEEWHKELFEYCK-EKGIEFFSTPFDLE 80 (240)
T ss_pred HHHHHHHCCCEEEEECCCHHHHCCCCCCCHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH-HCCCCEEECCCCHH
T ss_conf 78999819899998146689977803340230056887886499999982689999999999999-82996898989899
Q ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCC--HHHHHHHHHH---CCEEEEEEEE--CCCCCCC
Q ss_conf 3676404776079997066421589998677649825998523334--4789988620---1402899830--6776533
Q gi|254780975|r 77 HINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETP--VAILEDVIDE---IDMILIMTVN--PGFGGQQ 149 (224)
Q Consensus 77 ~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~--~~~i~~~l~~---~D~vliM~V~--PG~~Gq~ 149 (224)
-++.+.+.|++.+=++.-...+.. .++.+.+.+..+=++....|- +.....++.. -+.+++.||. |- +
T Consensus 81 s~~~l~~l~~~~~KIaS~d~~n~~-Li~~i~k~~kpiiiSTG~s~~~eI~~~i~~~~~~~~~~i~llhCvS~YPt----~ 155 (240)
T pfam03102 81 SVDFLESLGVPAYKIASGEITNLP-LLRYIAKTGKPVILSTGMATLEEIEEAVETLREAGNEDITLLHCTSEYPA----P 155 (240)
T ss_pred HHHHHHHCCCCEEEECCCCCCCHH-HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC----C
T ss_conf 999887558886998988646589-99999973996899579888999999999999634567768665888999----7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEE-EEECCCCHHHHHHHHHCCCCEEEECHHH---------HCCCCHHHHHHHHHHHHHH
Q ss_conf 22013577899865431386526-9815899889999996799899974266---------3789989999999999997
Q gi|254780975|r 150 LIESTIPKIRQAKALIGKRSISL-EVDGGVTSRNIKSLVQAGADLLVVGSSF---------FNQKGEISYAKRLNDLKKS 219 (224)
Q Consensus 150 f~~~~l~kI~~l~~~~~~~~~~I-~vDGGvn~~~i~~l~~~Gad~~V~Gsai---------f~~~d~~~~~~~l~~l~~~ 219 (224)
..+--|.+|+.+++.++ ..+ .-|=..+.+...-....||.++=--=.+ .-+-+|.+..+-++.+++.
T Consensus 156 ~~~~nL~~I~~lk~~f~---~~iG~SdHs~g~~~~~~A~~~GA~iiEKH~tl~~~~~g~D~~~Sl~~~e~~~~v~~ir~~ 232 (240)
T pfam03102 156 FEDVNLRAIPTLKEAFG---VPVGYSDHTLGIEAPIAAVALGASVIEKHFTLDRNLPGPDHKASLEPDELKELVKDIRNV 232 (240)
T ss_pred HHHHHHHHHHHHHHHCC---CCEEECCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 46600999889998679---968847988970777999982993999876558999999556439999999999999999
Q ss_pred HH
Q ss_conf 86
Q gi|254780975|r 220 AL 221 (224)
Q Consensus 220 a~ 221 (224)
..
T Consensus 233 ~~ 234 (240)
T pfam03102 233 EK 234 (240)
T ss_pred HH
T ss_conf 99
No 394
>PRK06739 pyruvate kinase; Validated
Probab=66.60 E-value=11 Score=18.41 Aligned_cols=154 Identities=12% Similarity=0.119 Sum_probs=94.3
Q ss_pred EEEEEEEEEECCHHHHHHCCCCCCEEEEECC-CCCCHHHHHHHHHHCC-CEEEEEEECCCC--HHHHHHHHHHCCEEEE-
Q ss_conf 1685678851203367640477607999706-6421589998677649-825998523334--4789988620140289-
Q gi|254780975|r 64 VFDCHLMISSIDSHINIIADAGCDIITFHPE-SSPHIRRSLRTIHAMG-KKTGVAINPETP--VAILEDVIDEIDMILI- 138 (224)
Q Consensus 64 ~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E-~~~~~~~~i~~i~~~g-~k~Giai~p~T~--~~~i~~~l~~~D~vli- 138 (224)
.++.--+++.=.+.++...+.|+|+|.+-+= +.+++.++-+.+++.+ ..++|--.-+|+ ++.+..++...|.|++
T Consensus 157 ~l~lp~LTekD~~dI~~a~~~~vD~valSFVrsa~DI~~lr~~l~~~~~~~~~IIaKIE~~~al~NldeIi~~sDgIMIA 236 (352)
T PRK06739 157 IVSLPAITEKDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIA 236 (352)
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCEEEEE
T ss_conf 66776688026999999987599999985779999999999999972688862799864998997699999855946996
Q ss_pred ---EEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC----------C---HHHHHHHHHCCCCEEEECHHHHC
Q ss_conf ---9830677653322013577899865431386526981589----------9---88999999679989997426637
Q gi|254780975|r 139 ---MTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV----------T---SRNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 139 ---M~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv----------n---~~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
|+++-+..--+ ..=.+ +-+...+.+-.+.|-.-+ + ...+....-.|+|.+.+..----
T Consensus 237 RGDLgvei~~e~vp---~~Qk~---Ii~~c~~~gkpvivATqmLeSM~~~p~PTRAEv~DVanav~dG~D~vmLs~ETA~ 310 (352)
T PRK06739 237 RGDLGVELPYQFIP---LLQKM---MIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESAS 310 (352)
T ss_pred CCCCCCCCCHHHHH---HHHHH---HHHHHHHCCCCEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCHHCC
T ss_conf 58644636988989---99999---9999998299789963628876349988769999999999847988997220117
Q ss_pred CCCHHHHHHHHHHHHHHHHHC
Q ss_conf 899899999999999978627
Q gi|254780975|r 203 QKGEISYAKRLNDLKKSALAI 223 (224)
Q Consensus 203 ~~d~~~~~~~l~~l~~~a~a~ 223 (224)
.+.|.++.+.+......|+.+
T Consensus 311 G~yPv~~V~~m~~i~~~aE~~ 331 (352)
T PRK06739 311 GEHPVESVSTLRLVSEFAEHV 331 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
T ss_conf 979999999999999999876
No 395
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=66.60 E-value=11 Score=18.41 Aligned_cols=99 Identities=12% Similarity=0.144 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCE-ECCC--------CCCCHH--------HHHH-HHHCC-CCEEEEEEEEEEC---
Q ss_conf 99999999999659989999734263-4584--------341789--------9998-64125-6416856788512---
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGC-FVPN--------ISFGAD--------VIRS-LRSYS-DSVFDCHLMISSI--- 74 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~-fvpn--------~~~~~~--------~i~~-i~~~t-~~~~dvHLMv~~P--- 74 (224)
.-+.++++.|.++|+++||+|=-.-. ++.. -+..++ .++. ++..+ +..+-+|+.--|-
T Consensus 170 ~a~~~Ei~~L~~aG~~~IQiDep~~a~l~~~~~~~~~~~~~~~~~~l~~~~~~~~N~al~~~p~d~~i~~HiC~Gn~~~~ 249 (370)
T PRK06520 170 KTYRDAVKAFYDAGCRYLQLDDTVWAYLCSDDERQQARERGDDPDNLQQIYARVINYAIAERPADLTITLHVCRGNFRST 249 (370)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
T ss_conf 99999999999879988987574165306877786776536899999999999999997089977489998767887877
Q ss_pred -------CHHHHHH-CCCCCCEEEEECCCCCC-HHHHHHHHHHCCCEEEE
Q ss_conf -------0336764-04776079997066421-58999867764982599
Q gi|254780975|r 75 -------DSHINII-ADAGCDIITFHPESSPH-IRRSLRTIHAMGKKTGV 115 (224)
Q Consensus 75 -------~~~i~~~-~~~g~d~i~~H~E~~~~-~~~~i~~i~~~g~k~Gi 115 (224)
....+.+ .+.++|.+++.+++... -.+.+..+...+..+++
T Consensus 250 ~~~~g~Y~~i~~~l~~~~~vd~~~lE~d~~r~g~~e~L~~l~~~~k~vvl 299 (370)
T PRK06520 250 WISEGGYEPVAETLLGGVNVDAYFLEYDNERAGGFEPLRFLPKGNKQVVL 299 (370)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCCCCEEEE
T ss_conf 65566646679999843788858998447544542267756867877998
No 396
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=66.55 E-value=4.7 Score=20.68 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=61.1
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58999867764982599852333447899886201402899830677653322013577899865431386526981589
Q gi|254780975|r 99 IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV 178 (224)
Q Consensus 99 ~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv 178 (224)
...+++.+|+.|+.+-|=-+..||.+.+++.++.+|+.|+ -||.+..-.. =++=|+=
T Consensus 147 ~~~LL~~c~~~gihTAvET~gft~~~~~~~~~~~~DLfL~------------------DiK~~D~~~H-----~~~tG~~ 203 (305)
T TIGR02494 147 ALALLKACRERGIHTAVETSGFTPWETIEKVLPYVDLFLY------------------DIKHLDDERH-----KEVTGVD 203 (305)
T ss_pred HHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHH------------------HHHHCCCHHH-----HHHCCCC
T ss_conf 9999999975899467605568888999988887769987------------------2641180120-----5533898
Q ss_pred C---HHHHHHHHHCC----CCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9---88999999679----9899974266378998999999999999
Q gi|254780975|r 179 T---SRNIKSLVQAG----ADLLVVGSSFFNQKGEISYAKRLNDLKK 218 (224)
Q Consensus 179 n---~~~i~~l~~~G----ad~~V~Gsaif~~~d~~~~~~~l~~l~~ 218 (224)
| .+|++.|.++| ++++|==-.|=+-.|..+.++.+-++..
T Consensus 204 N~~IL~NL~~L~~~~~~GG~~v~iR~PvIpG~Nds~~~i~a~~~f~~ 250 (305)
T TIGR02494 204 NELILENLEALLAAGKDGGKNVVIRIPVIPGFNDSEENIEAIAEFLR 250 (305)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 37899999999971788995589987204898989899999999999
No 397
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=66.31 E-value=11 Score=18.37 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=53.8
Q ss_pred HHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCC
Q ss_conf 998677649825998523334478998862-01402899830677653322013577899865431--386526981589
Q gi|254780975|r 102 SLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIG--KRSISLEVDGGV 178 (224)
Q Consensus 102 ~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~--~~~~~I~vDGGv 178 (224)
.+.|+|+.-..+ +.+.-=...+.-..-.+ -+|.|.| | |-|--.-..-+.+++-+-++++..+ ...++|.+||||
T Consensus 204 di~~lr~~~~~p-livKGIl~~~DA~~A~~~G~dgIiV-S-NHGGRqLD~~~~~i~~Lp~I~~~~~av~~~~~v~~DgGi 280 (344)
T cd02922 204 DIKWLRKHTKLP-IVLKGVQTVEDAVLAAEYGVDGIVL-S-NHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGV 280 (344)
T ss_pred HHHHHHHHCCCC-EEECCCCCHHHHHHHHHCCCCEEEE-E-CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 999999866997-0100257799999999659988997-1-886212578831899989999988985887089971885
Q ss_pred CH-HHHHHHHHCCCCEEEECHH-HHC
Q ss_conf 98-8999999679989997426-637
Q gi|254780975|r 179 TS-RNIKSLVQAGADLLVVGSS-FFN 202 (224)
Q Consensus 179 n~-~~i~~l~~~Gad~~V~Gsa-if~ 202 (224)
+. ..+-+....|||.+-+|.. +|.
T Consensus 281 R~G~DV~KAlALGA~aV~iGRp~l~g 306 (344)
T cd02922 281 RRGTDVLKALCLGAKAVGLGRPFLYA 306 (344)
T ss_pred CCHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 75789999997699989767899999
No 398
>KOG2335 consensus
Probab=66.02 E-value=11 Score=18.34 Aligned_cols=140 Identities=11% Similarity=0.144 Sum_probs=79.8
Q ss_pred CCEEEEEEEEEECCHHHHHH--CCCCCCEEEEECCC--------------CCC---HHHHHHHHHHC-CCEEEEEEECCC
Q ss_conf 64168567885120336764--04776079997066--------------421---58999867764-982599852333
Q gi|254780975|r 62 DSVFDCHLMISSIDSHINII--ADAGCDIITFHPES--------------SPH---IRRSLRTIHAM-GKKTGVAINPET 121 (224)
Q Consensus 62 ~~~~dvHLMv~~P~~~i~~~--~~~g~d~i~~H~E~--------------~~~---~~~~i~~i~~~-g~k~Giai~p~T 121 (224)
+-|+=|.+-.+||+..++.. +..-+|.|-+-+-+ ..+ +.+.++.++.. +.-+-+-|.-.-
T Consensus 73 D~PLIvQf~~ndp~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~ 152 (358)
T KOG2335 73 DRPLIVQFGGNDPENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFV 152 (358)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEECCCHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 78669997479989999999986533472041589987888437726000238899999999998525998699998557
Q ss_pred CHHHHHHHHHH-----CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHH-CCCCEE
Q ss_conf 44789988620-----14028998306776533220135778998654313865269815899-889999996-799899
Q gi|254780975|r 122 PVAILEDVIDE-----IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQ-AGADLL 194 (224)
Q Consensus 122 ~~~~i~~~l~~-----~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~-~Gad~~ 194 (224)
+++.-..|+.. ++++.|.+-.+--.|..--+--++.|+.+|+..+. +.+.+-|+|. .+-+..+.+ .|+|-+
T Consensus 153 d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~--ipviaNGnI~~~~d~~~~~~~tG~dGV 230 (358)
T KOG2335 153 DLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD--IPVIANGNILSLEDVERCLKYTGADGV 230 (358)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHHCCC--CCEEEECCCCCHHHHHHHHHHHCCCEE
T ss_conf 678789999999867986899936557762888887677999999974767--708950885768999999997587468
Q ss_pred EECHHHHCC
Q ss_conf 974266378
Q gi|254780975|r 195 VVGSSFFNQ 203 (224)
Q Consensus 195 V~Gsaif~~ 203 (224)
-+|.++..+
T Consensus 231 M~arglL~N 239 (358)
T KOG2335 231 MSARGLLYN 239 (358)
T ss_pred EECCHHHCC
T ss_conf 860000038
No 399
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=65.89 E-value=11 Score=18.32 Aligned_cols=139 Identities=17% Similarity=0.221 Sum_probs=67.0
Q ss_pred CEEEEEEEEEECCHH---------HHHHCCCCCCE--EEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHH
Q ss_conf 416856788512033---------67640477607--99970664215899986776498--259985233344789988
Q gi|254780975|r 63 SVFDCHLMISSIDSH---------INIIADAGCDI--ITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDV 129 (224)
Q Consensus 63 ~~~dvHLMv~~P~~~---------i~~~~~~g~d~--i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~ 129 (224)
...-+..|.-||..| +++....|+.+ +++-+- ..+++...++|.+.|. -.-+++.|+| ++.+...
T Consensus 90 ~t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAG-IP~le~A~ElI~~L~~~G~~yv~fKPGt-IeqI~sv 167 (717)
T COG4981 90 RTAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAG-IPSLEEAVELIEELGDDGFPYVAFKPGT-IEQIRSV 167 (717)
T ss_pred CCCEEEEEEECHHHHHHCCCHHHHHHHHHHCCCCCCEEEEECC-CCCHHHHHHHHHHHHHCCCEEEEECCCC-HHHHHHH
T ss_conf 6211567986567866337767878999846997241797269-8848999999998764586168766772-9999999
Q ss_pred HHH----CCEEEEEEEECCCCCCC--CCCHHHHHHHHHHHHHHCCCCEEEEECCCCH------------HHHHHHHHCCC
Q ss_conf 620----14028998306776533--2201357789986543138652698158998------------89999996799
Q gi|254780975|r 130 IDE----IDMILIMTVNPGFGGQQ--LIESTIPKIRQAKALIGKRSISLEVDGGVTS------------RNIKSLVQAGA 191 (224)
Q Consensus 130 l~~----~D~vliM~V~PG~~Gq~--f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~------------~~i~~l~~~Ga 191 (224)
+.. -.+=.+|-++-|-+|.- |..----.+....+++...|+-+++-||+.. .+.-.+-..-.
T Consensus 168 i~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~ 247 (717)
T COG4981 168 IRIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPF 247 (717)
T ss_pred HHHHHCCCCCCEEEEEECCCCCCCCCHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCC
T ss_conf 99986089985699971576677555422020899999998457977999668768812112000541065429998874
Q ss_pred CEEEECHHHHCC
Q ss_conf 899974266378
Q gi|254780975|r 192 DLLVVGSSFFNQ 203 (224)
Q Consensus 192 d~~V~Gsaif~~ 203 (224)
|-+-.||+.--.
T Consensus 248 DGiLvGtaaMat 259 (717)
T COG4981 248 DGILVGTAAMAT 259 (717)
T ss_pred CEEEECHHHHHH
T ss_conf 515752567764
No 400
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit; InterPro: IPR005875 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This family represents PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, which catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. PurK belongs to the ATP grasp superfamily of C-N ligase enzymes. Each subunit of PurK is composed of three domains (A, B, and C). The B domain contains a flexible, glycine-rich loop (B loop, T123-G130) that is disordered in the sulphate-PurK structure and becomes ordered in the MgADP-PurK structure. MgADP is wedged between the B and C domains, as with all members of the ATP grasp superfamily. Other enzymes in this superfamily contain a conserved Omega loop proposed to interact with the B loop, define the specificity of their nonnucleotide substrate, and protect the acyl phosphate intermediate formed from this substrate. PurK contains a minimal Omega loop without conserved residues. In the reaction catalyzed by PurK, carboxyphosphate is the putative acyl phosphate intermediate. The sulphate of the sulphate ion-liganded PurK interacts electrostatically with Arg 242 and the backbone amide group of Asn 245, components of the J loop of the C domain. This sulphate may reveal the location of the carboxyphosphate binding site. Conserved residues within the C-terminus of the C domain define a pocket that is proposed to bind AIR in collaboration with an N-terminal strand loop helix motif in the A domain (P loop, G8-L1). The P loop is proposed to bind the phosphate of AIR on the basis of similar binding sites observed in PurN and PurE and proposed in PurD and PurT, four other enzymes in the purine pathway .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=65.89 E-value=11 Score=18.32 Aligned_cols=113 Identities=22% Similarity=0.360 Sum_probs=75.3
Q ss_pred EEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCC--CEE-----------------------EEEEEC
Q ss_conf 6856788512033676404776079997066421589998677649--825-----------------------998523
Q gi|254780975|r 65 FDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMG--KKT-----------------------GVAINP 119 (224)
Q Consensus 65 ~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g--~k~-----------------------Giai~p 119 (224)
-.|+.-..||+. ++++++. +|.||+-.|..+ ...++++...| .++ |++.-|
T Consensus 44 ~~v~a~~~d~~~-i~~La~~-cDviT~E~Ehv~--~~~L~~L~~~g~~~~~~P~~~~l~~~~dk~~qK~~L~~~g~~vp~ 119 (386)
T TIGR01161 44 EHVLASFTDPEA-IRELAEA-CDVITFEFEHVD--VEALEKLEARGDKVKVRPSPEALAIIQDKLTQKQFLQKLGLPVPP 119 (386)
T ss_pred CEEEEEECCHHH-HHHHHHH-CCEEEEEECCCC--CHHHHHHHHCCCEEEEECCHHHHHHHHCHHHHHHHHHHCCCCCCC
T ss_conf 579985148789-9999976-565543101378--567899983598477603889999883658999999966899884
Q ss_pred CC-----CHHHHHHHHHHCCEEEEE-EEECCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf 33-----447899886201402899-8306776533-22013577899865431386526981589988
Q gi|254780975|r 120 ET-----PVAILEDVIDEIDMILIM-TVNPGFGGQQ-LIESTIPKIRQAKALIGKRSISLEVDGGVTSR 181 (224)
Q Consensus 120 ~T-----~~~~i~~~l~~~D~vliM-~V~PG~~Gq~-f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~ 181 (224)
.- ..+.++.....+++--|+ +..=||.|+. |+-...+.+.++-+.+.+.+..+.|-..|+.+
T Consensus 120 f~~~~~~~~~~~~~~~~~~g~p~VlK~~~gGYDGrGq~~i~~~~~~~~~~~~~~~~~~~~~~E~fV~F~ 188 (386)
T TIGR01161 120 FVVIEIKDEEELDSALQELGFPVVLKARRGGYDGRGQFVIKSEADLPQALKELGDKEEELIVEEFVPFE 188 (386)
T ss_pred CCEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEECCHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 120223684257899987398479984206527731089747432889998528884058985235620
No 401
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=65.63 E-value=7.9 Score=19.23 Aligned_cols=150 Identities=13% Similarity=0.220 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHCCCCE------EEEEEEEEECCHHHHHHCCCC--CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEE--E
Q ss_conf 1789999864125641------685678851203367640477--60799970664215899986776498259985--2
Q gi|254780975|r 49 FGADVIRSLRSYSDSV------FDCHLMISSIDSHINIIADAG--CDIITFHPESSPHIRRSLRTIHAMGKKTGVAI--N 118 (224)
Q Consensus 49 ~~~~~i~~i~~~t~~~------~dvHLMv~~P~~~i~~~~~~g--~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai--~ 118 (224)
||-++++.+.-.-... +|..-|+..-.+++..|.+.| .++|.+-.-+|..--+..+.+.+.|+++-+.+ +
T Consensus 79 ~g~eil~~VpGrVS~EVdarls~d~~~~i~~A~~li~ly~~~gi~~~rilIKipaTweGi~A~~~Le~~GI~~n~TlvFs 158 (313)
T cd00957 79 FGTEILKLIPGRVSTEVDARLSFDTNATIAKARKLIKLYEEAGIDKERILIKIAATWEGIQAAKQLEKEGIHCNLTLLFS 158 (313)
T ss_pred HHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 99998556888658886610214858899999999999997199845457855887889999999997498543677647
Q ss_pred CCCC-------HHHHHHHHHHC-CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCHHHHHHHHH
Q ss_conf 3334-------47899886201-40289983067765332201357789986543138652--69815899889999996
Q gi|254780975|r 119 PETP-------VAILEDVIDEI-DMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS--LEVDGGVTSRNIKSLVQ 188 (224)
Q Consensus 119 p~T~-------~~~i~~~l~~~-D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~--I~vDGGvn~~~i~~l~~ 188 (224)
..+- ...+.||..-+ ||.-..+-...+.+ ...| -..-++++.+++.+++++ +..-.--|.+.+..|
T Consensus 159 ~~QA~aaa~Ag~~~IsPfVGRi~DWyk~~~~~~~~~~-~~DP-Gv~~v~~Iy~yyk~~g~~T~Vm~ASfRn~~ei~~L-- 234 (313)
T cd00957 159 FAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTA-EEDP-GVASVKKIYNYYKKFGYKTKVMGASFRNIGQILAL-- 234 (313)
T ss_pred HHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCCCCCC-CCCC-HHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHH--
T ss_conf 9999999976987988652317789883257655777-7795-07999999999997699707853102779999987--
Q ss_pred CCCCEEEECHHHHC
Q ss_conf 79989997426637
Q gi|254780975|r 189 AGADLLVVGSSFFN 202 (224)
Q Consensus 189 ~Gad~~V~Gsaif~ 202 (224)
+|+|.+...-.+..
T Consensus 235 aGcD~lTisP~LL~ 248 (313)
T cd00957 235 AGCDYLTISPALLE 248 (313)
T ss_pred HCCCEEECCHHHHH
T ss_conf 37882413999999
No 402
>TIGR00583 mre11 DNA repair protein (mre11); InterPro: IPR003701 Mre11 and Rad50 are two proteins required for DNA repair and meiosis-specific double-strand break formation in Saccharomyces cerevisiae. Mre11 by itself has 3' to 5' exonuclease activity that is increased when Mre11 is in a complex with Rad50 . These eukaryotic proteins contain one metallo-phosphoesterase domain followed by an Mre11 DNA-binding domain. S. cerevisiae Mre11 is required for DNA repair and meiosis-specific double-strand break (DSB) formation and has both 3' to 5' exonuclease activity (which increases when in complex with Rad50) and endonuclease activity. The N-terminal phosphoesterase domain is required for DSB repair, and the carboxyl-terminal dsDNA-binding domain is essential during meiosis for chromatin modification and DSB formation . Schizosaccharomyces pombe rad32 is required for repair of double strand breaks and recombination . For additional information please see . ; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=65.63 E-value=11 Score=18.29 Aligned_cols=38 Identities=16% Similarity=0.340 Sum_probs=15.5
Q ss_pred HHHHHHHHCCCCEEEECHHHHC--CCCHHHHHHHHHHHHH
Q ss_conf 8999999679989997426637--8998999999999999
Q gi|254780975|r 181 RNIKSLVQAGADLLVVGSSFFN--QKGEISYAKRLNDLKK 218 (224)
Q Consensus 181 ~~i~~l~~~Gad~~V~Gsaif~--~~d~~~~~~~l~~l~~ 218 (224)
|-+....+..||++++|+=||= +|=....++.++.||+
T Consensus 33 Evl~iA~~~~VDMvllgGDLFH~NkPSrk~lYqvl~~LR~ 72 (424)
T TIGR00583 33 EVLQIAKEQDVDMVLLGGDLFHENKPSRKSLYQVLRSLRL 72 (424)
T ss_pred HHHHHHHHCCCCEEEECCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 9999975089678985681642458407899999999987
No 403
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=65.43 E-value=11 Score=18.27 Aligned_cols=183 Identities=16% Similarity=0.224 Sum_probs=101.1
Q ss_pred HHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEE---EEEEEEEECC---HHHHHHCCCCCCEEEE-E
Q ss_conf 9999999965998999973426345843417899998641256416---8567885120---3367640477607999-7
Q gi|254780975|r 20 GEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVF---DCHLMISSID---SHINIIADAGCDIITF-H 92 (224)
Q Consensus 20 ~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~---dvHLMv~~P~---~~i~~~~~~g~d~i~~-H 92 (224)
.+-++.+...--+.-++|++ .+|-++.=....+.+ +-+++.+ ++|-.-.-+. -=..++.+.|++++.+ |
T Consensus 421 ~~~~~~l~~~~~~~~~~ev~---i~ppft~l~~~~~~~-~~s~i~~GAQn~~~~~~GA~TGEiS~~mL~~~g~~yviiGH 496 (653)
T PRK13962 421 KEFVSKLVFILKDVQRVEVV---VCPPFTALRSVKEAL-DGSNIKLGAQNVFYEEKGAYTGEISPGMLKDIGVEYVIIGH 496 (653)
T ss_pred HHHHHHHHHHCCCCCCCEEE---EECCHHHHHHHHHHH-CCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEECC
T ss_conf 99999999756885576599---978873399999985-79981798463789878587452119999986999999791
Q ss_pred C-------CCCCCHHHHHHHHHHCCCEEEEEEECC-------CCHH----HHHHHHHHCCE----EEEEEEECCC---CC
Q ss_conf 0-------664215899986776498259985233-------3447----89988620140----2899830677---65
Q gi|254780975|r 93 P-------ESSPHIRRSLRTIHAMGKKTGVAINPE-------TPVA----ILEDVIDEIDM----ILIMTVNPGF---GG 147 (224)
Q Consensus 93 ~-------E~~~~~~~~i~~i~~~g~k~Giai~p~-------T~~~----~i~~~l~~~D~----vliM~V~PG~---~G 147 (224)
. |+.+.+.+-+..+.+.|..+-+.+.-. ...+ .+...+..++. =++..=+|=. .|
T Consensus 497 SERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGE~~~~r~~g~~~~v~~~Ql~~~l~~~~~~~~~~iviAYEPvWAIGTG 576 (653)
T PRK13962 497 SERRQYFGETDELINRKVKAVLKAGLTPILCVGETLEEREKGLTFEVVRGQLKEGLAGLSAEDVKKVVIAYEPVWAIGTG 576 (653)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCEEEEECCHHHCCCC
T ss_conf 56526269898999999999998869899991898999867896899999999998569978848789998827744899
Q ss_pred CCCCC----HHHHHHHH-HHHHHHC---CCCEEEEECCCCHHHHHHHHHC-CCCEEEECHHHHCCCCH
Q ss_conf 33220----13577899-8654313---8652698158998899999967-99899974266378998
Q gi|254780975|r 148 QQLIE----STIPKIRQ-AKALIGK---RSISLEVDGGVTSRNIKSLVQA-GADLLVVGSSFFNQKGE 206 (224)
Q Consensus 148 q~f~~----~~l~kI~~-l~~~~~~---~~~~I~vDGGvn~~~i~~l~~~-Gad~~V~Gsaif~~~d~ 206 (224)
+.-.+ .+...||+ +.+++.+ .++.|.--|+||.+|+.++... ++|-+-+|+|=.+.++.
T Consensus 577 ~~a~~~~~~e~~~~Ir~~l~~~~~~~~a~~i~IlYGGSV~~~N~~~l~~~~~vDG~LVGgASL~~~~F 644 (653)
T PRK13962 577 KVATPKQAQEVHAFIRAVLAEMFGEEAARSVRILYGGSVKPDNALGLMEQPDIDGGLVGGASLKAEEF 644 (653)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHH
T ss_conf 99899999999999999999872955508552886188898999999668898868821586798899
No 404
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=65.30 E-value=11 Score=18.25 Aligned_cols=175 Identities=15% Similarity=0.227 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHH-HC-CCCEEEEEEEEEECC-----------HHHHHH
Q ss_conf 88999999999996599899997342634584341789999864-12-564168567885120-----------336764
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLR-SY-SDSVFDCHLMISSID-----------SHINII 81 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~-~~-t~~~~dvHLMv~~P~-----------~~i~~~ 81 (224)
...+++..++.+.++|+|-+-. .+=.++.+. .+ .+.++=+||=..++. -.++..
T Consensus 19 gl~d~~~~i~~~~~~g~dai~~-------------~~G~~~~~~~~~~~~~~li~~ls~~t~~~~~~~~~~~l~~sVeeA 85 (235)
T cd00958 19 GLEDPEETVKLAAEGGADAVAL-------------TKGIARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDA 85 (235)
T ss_pred CCCCHHHHHHHHHHCCCCEEEE-------------CHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHCCHHHH
T ss_conf 6459899999998649999998-------------888997515321578766999646764578885177665169999
Q ss_pred CCCCCCEEEEECCC--------CCCHHHHHHHHHHCCCEEEEEEEC-------CCCHHHHHHHH---HH--CCEEEEEEE
Q ss_conf 04776079997066--------421589998677649825998523-------33447899886---20--140289983
Q gi|254780975|r 82 ADAGCDIITFHPES--------SPHIRRSLRTIHAMGKKTGVAINP-------ETPVAILEDVI---DE--IDMILIMTV 141 (224)
Q Consensus 82 ~~~g~d~i~~H~E~--------~~~~~~~i~~i~~~g~k~Giai~p-------~T~~~~i~~~l---~~--~D~vliM~V 141 (224)
.+.|+|-+.+|.-- ..++-++.+.+++.|+=+-+-.-| .+..+.+..-. -. .|.|=+ -
T Consensus 86 vrlGAdaV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Pll~~~yprG~~~~~~~d~~~ia~aaRia~ELGADiVKv--~ 163 (235)
T cd00958 86 VRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKT--K 163 (235)
T ss_pred HHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE--C
T ss_conf 83555679999868981689999999999999998399789997416876556566899999999999978998982--3
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC---CH----HHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
Q ss_conf 0677653322013577899865431386526981589---98----8999999679989997426637899899999999
Q gi|254780975|r 142 NPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV---TS----RNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLN 214 (224)
Q Consensus 142 ~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv---n~----~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~ 214 (224)
.|| .++.+.++- ..-...+-+-||= +. +.+....++|+.-++.|.-+|..+||.+..++|.
T Consensus 164 y~g------~~e~f~~vv------~~~~vPVviaGG~k~~~~~~~L~~v~~a~~aGa~Gv~~GRNvfQ~~~p~~~~~al~ 231 (235)
T cd00958 164 YTG------DAESFKEVV------EGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAIS 231 (235)
T ss_pred CCC------CHHHHHHHH------HHCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHCCCCHHHHHHHHH
T ss_conf 999------989999999------70899899808999999999999999999769956763641225888999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780975|r 215 DL 216 (224)
Q Consensus 215 ~l 216 (224)
.+
T Consensus 232 ~i 233 (235)
T cd00958 232 AV 233 (235)
T ss_pred HH
T ss_conf 74
No 405
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=65.20 E-value=11 Score=18.24 Aligned_cols=167 Identities=14% Similarity=0.159 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEE-C-CHHHHHHCCCCCCEEEEECC
Q ss_conf 999999999996599899997342634584341789999864125641685678851-2-03367640477607999706
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISS-I-DSHINIIADAGCDIITFHPE 94 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~-P-~~~i~~~~~~g~d~i~~H~E 94 (224)
-.-.+-.+.|.+.|++++-+= .|..+ ....+.++...+..+...+++-. + ..-++...++|++.+.+..-
T Consensus 26 ~~K~~ia~~L~~~GV~~IEvG------~P~~~--~~e~~~~~~i~~~~l~~~i~~~~R~~~~di~~a~~~g~~~v~i~~~ 97 (378)
T PRK11858 26 EEKLAIARMLDEIGVDQIEAG------FPAVS--EDEKEAIKAIAKLGLNASILAWNRAVKSDIDASIDCGVDAVHIFIA 97 (378)
T ss_pred HHHHHHHHHHHHCCCCEEEEE------CCCCC--CCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEC
T ss_conf 999999999998198999994------77778--3489999999856798458874035787799998579698999960
Q ss_pred CC----------------CCHHHHHHHHHHCCCEEEEEEEC--CCCHHHHHHHHHH-----CCEEEEEEEECCCCCCCCC
Q ss_conf 64----------------21589998677649825998523--3344789988620-----1402899830677653322
Q gi|254780975|r 95 SS----------------PHIRRSLRTIHAMGKKTGVAINP--ETPVAILEDVIDE-----IDMILIMTVNPGFGGQQLI 151 (224)
Q Consensus 95 ~~----------------~~~~~~i~~i~~~g~k~Giai~p--~T~~~~i~~~l~~-----~D~vliM~V~PG~~Gq~f~ 151 (224)
+. +...+.+++++++|..+-+..-- .++++.+..++.. +|.|.+ +-.-|.. .=
T Consensus 98 ~Sd~h~~~~l~~t~~e~l~~~~~~v~~Ak~~Gl~v~f~~eD~~r~~~~~l~~~~~~a~~~Gad~I~l-~DT~G~~---~P 173 (378)
T PRK11858 98 TSDIHLKYKLKKTREEVLERLVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEAAKAAEEAGADRVRF-CDTVGIL---DP 173 (378)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCC---CH
T ss_conf 6799999996899899999999999999976986999440125689999999999999749989996-3655666---99
Q ss_pred CHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 0135778998654313-8652698158998899999967998999
Q gi|254780975|r 152 ESTIPKIRQAKALIGK-RSISLEVDGGVTSRNIKSLVQAGADLLV 195 (224)
Q Consensus 152 ~~~l~kI~~l~~~~~~-~~~~I~vDGGvn~~~i~~l~~~Gad~~V 195 (224)
..+.+.++.+++..+- -.+...=|=|.-.-|.-...++||+.+=
T Consensus 174 ~~v~~~v~~l~~~~~~~i~~H~HNd~GlAvANalaAv~AGa~~v~ 218 (378)
T PRK11858 174 FTMYELVKELVEAVDIPIEVHCHNDFGMATANAIAGIEAGATQVH 218 (378)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEE
T ss_conf 999999999997269855999707755599999999980999899
No 406
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=64.81 E-value=11 Score=18.19 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=70.1
Q ss_pred HHHHHHHHHCCCCEEEEEEEEE-----ECCHHHHHHCCCCCCEEEEECCCC--------------CCHHHHHHHHHH---
Q ss_conf 8999986412564168567885-----120336764047760799970664--------------215899986776---
Q gi|254780975|r 51 ADVIRSLRSYSDSVFDCHLMIS-----SIDSHINIIADAGCDIITFHPESS--------------PHIRRSLRTIHA--- 108 (224)
Q Consensus 51 ~~~i~~i~~~t~~~~dvHLMv~-----~P~~~i~~~~~~g~d~i~~H~E~~--------------~~~~~~i~~i~~--- 108 (224)
.+.++.|.+.+++|+-+.+=.= +..+.++.+.++|+--|++ |-. -..++...+|+.
T Consensus 58 ~~~~~~I~~a~~lPv~aD~d~GyG~~~~v~~tv~~~~~aG~agi~I--ED~~~~k~~~~~~~~~l~~~~e~~~ki~aa~~ 135 (243)
T cd00377 58 LAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHI--EDQVGPKKCGHHGGKVLVPIEEFVAKIKAARD 135 (243)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999999961699889987667786799999999999749967986--58788765666576323069999999999999
Q ss_pred CCCE-EEEEEECCCC------------HHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EE
Q ss_conf 4982-5998523334------------4789988620-140289983067765332201357789986543138652-69
Q gi|254780975|r 109 MGKK-TGVAINPETP------------VAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS-LE 173 (224)
Q Consensus 109 ~g~k-~Giai~p~T~------------~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~-I~ 173 (224)
.... +-+.|+.-|+ ++...-|.+- .|.|.+-+.. ..+-++++.+..+ ..+. ..
T Consensus 136 a~~~~~d~~I~ARTDa~~~~~~~~~eai~R~~aY~~AGAD~ifi~~~~-----------~~~ei~~~~~~~~-~Pl~~~~ 203 (243)
T cd00377 136 ARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK-----------DPEEIRAFAEAPD-VPLNVNM 203 (243)
T ss_pred HHHHCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCC-----------CHHHHHHHHHHCC-CCEEEEE
T ss_conf 886368816875423454057889999999999998299899945899-----------9999999997369-9989995
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 815899889999996799899974266378
Q gi|254780975|r 174 VDGGVTSRNIKSLVQAGADLLVVGSSFFNQ 203 (224)
Q Consensus 174 vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~ 203 (224)
..|+ +.-+..+|.+.|+.++..|++.|..
T Consensus 204 ~~~~-~~~~~~eL~~lGv~~v~~g~~~~~a 232 (243)
T cd00377 204 TPGG-NLLTVAELAELGVRRVSYGLALLRA 232 (243)
T ss_pred CCCC-CCCCHHHHHHCCCCEEEECHHHHHH
T ss_conf 7889-9999999998699699985199999
No 407
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=64.78 E-value=11 Score=18.19 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=36.2
Q ss_pred HHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCH
Q ss_conf 999986412564168567885120336764047760799970664215899986776498259985233344
Q gi|254780975|r 52 DVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPV 123 (224)
Q Consensus 52 ~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~ 123 (224)
+.++.+|+. ++|+|+ ++.+.. |-+ ..+.-......+.-+++...++.+++.|.++.+-++|...-
T Consensus 28 ~~v~~~r~~-~iP~d~--i~~D~~-~~~---~~~~~~~~~d~~~fPdp~~~i~~l~~~G~~~~~~~~P~v~~ 92 (265)
T cd06589 28 EVIDGMREN-DIPLDG--FVLDDD-YTD---GYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYIRE 92 (265)
T ss_pred HHHHHHHHC-CCCCCE--EEEECC-CCC---CCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHH
T ss_conf 999999984-999765--998388-046---99725204687779999999999997899899974747999
No 408
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=64.38 E-value=12 Score=18.14 Aligned_cols=144 Identities=17% Similarity=0.262 Sum_probs=81.4
Q ss_pred HHHHHHHHH-CCCCEEEEEE-------EEEECCHHHHHH----CCCCCCEEEEECCCCC---CHHHHHHHHHHCCCEEEE
Q ss_conf 899998641-2564168567-------885120336764----0477607999706642---158999867764982599
Q gi|254780975|r 51 ADVIRSLRS-YSDSVFDCHL-------MISSIDSHINII----ADAGCDIITFHPESSP---HIRRSLRTIHAMGKKTGV 115 (224)
Q Consensus 51 ~~~i~~i~~-~t~~~~dvHL-------Mv~~P~~~i~~~----~~~g~d~i~~H~E~~~---~~~~~i~~i~~~g~k~Gi 115 (224)
.+.++.+|+ .+++++.--| +...|.+.+..| .+.|.|..-+- .+.+ +..-.+...++.|.-+-.
T Consensus 597 WeRL~~lRk~~PNvlfQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFRiF-DsLNwv~~M~vaidAV~e~gkv~Ea 675 (1149)
T COG1038 597 WERLERLRKAVPNVLFQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFRIF-DSLNWVEQMRVAIDAVREAGKVAEA 675 (1149)
T ss_pred HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE-HHHCCHHHCHHHHHHHHHCCCEEEE
T ss_conf 899999987686468999860056567677966899999999876696489841-0010254344589999862984799
Q ss_pred E-------EECCCCHHHHHHHHHHCCE-----EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE----ECCCC
Q ss_conf 8-------5233344789988620140-----289983067765332201357789986543138652698----15899
Q gi|254780975|r 116 A-------INPETPVAILEDVIDEIDM-----ILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEV----DGGVT 179 (224)
Q Consensus 116 a-------i~p~T~~~~i~~~l~~~D~-----vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~v----DGGvn 179 (224)
+ ++|+-+.-.+.+|++...- -.+++|.. -+|----..+...|+.||+- .++.|.+ --|..
T Consensus 676 tiCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKD-MAGLLKP~AA~~Li~aLr~~---~dlPIHlHTHDTsG~~ 751 (1149)
T COG1038 676 TICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKD-MAGLLKPAAAYRLISALRET---VDLPIHLHTHDTSGNG 751 (1149)
T ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHH-HHHCCCHHHHHHHHHHHHHH---CCCCEEEECCCCCCCH
T ss_conf 8873056678776444489999999999966772787633-34214769999999999874---4884487516788718
Q ss_pred HHHHHHHHHCCCCEEEECHH
Q ss_conf 88999999679989997426
Q gi|254780975|r 180 SRNIKSLVQAGADLLVVGSS 199 (224)
Q Consensus 180 ~~~i~~l~~~Gad~~V~Gsa 199 (224)
.-|.....++|||++=+.++
T Consensus 752 ~at~~aA~~AGvDivD~A~~ 771 (1149)
T COG1038 752 VATYLAAVEAGVDIVDVAMA 771 (1149)
T ss_pred HHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999838636666544
No 409
>PRK10063 predicted glycosyl transferase; Provisional
Probab=64.31 E-value=11 Score=18.28 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHCC---CCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHH-----HHHCCCCC
Q ss_conf 8899999999999659---989999734263458434178999986412564168567885120336-----76404776
Q gi|254780975|r 15 DFSRLGEEISNITKAG---AKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHI-----NIIADAGC 86 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~---~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i-----~~~~~~g~ 86 (224)
+...|++.++.+.+.. -+.+..=|+||-=..+ .++-++++ .-.+++. -+.+|.+=+ +-+..|..
T Consensus 12 ~~~~l~~Tl~Sv~~~~~~~~~~~E~IIIDGgStDg------T~~ii~~~-~~~~~~~-~iSEpD~GIYdAmNKGI~~A~G 83 (248)
T PRK10063 12 NLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDG------TREYLENL-NGIFNLR-FVSEPDNGIYDAMNKGIAMAQG 83 (248)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC------HHHHHHHC-CCCCCEE-EEEECCCCCHHHHHHHHHHCCC
T ss_conf 98999999999999861878986999997939611------79999970-6666679-9993898808898851987788
Q ss_pred CEEEEE
Q ss_conf 079997
Q gi|254780975|r 87 DIITFH 92 (224)
Q Consensus 87 d~i~~H 92 (224)
|+|.|-
T Consensus 84 d~I~FL 89 (248)
T PRK10063 84 KFALFL 89 (248)
T ss_pred CEEEEE
T ss_conf 889998
No 410
>PRK06846 deaminase; Validated
Probab=64.24 E-value=12 Score=18.12 Aligned_cols=182 Identities=13% Similarity=0.221 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHCCCCEE--EEEEECCEECCCCCC-CHHHHHHHHHCCCCEEEEEEEE--------EECCHHHHHHCCCCC
Q ss_conf 99999999996599899--997342634584341-7899998641256416856788--------512033676404776
Q gi|254780975|r 18 RLGEEISNITKAGAKQI--HFDVMDGCFVPNISF-GADVIRSLRSYSDSVFDCHLMI--------SSIDSHINIIADAGC 86 (224)
Q Consensus 18 ~l~~~i~~l~~~~~d~i--HiDImDg~fvpn~~~-~~~~i~~i~~~t~~~~dvHLMv--------~~P~~~i~~~~~~g~ 86 (224)
.-++.++.+-.+|...+ |+|+ |. ..++ +.+-+.++++.-.-.+|+.+-. .+-+..+++..+.|+
T Consensus 115 Ra~~~l~~~~a~Gtt~iRTHvDv-dp----~~gl~~lea~~~~~e~~~~~i~lqiVAFPQ~Gll~~~~~~Ll~eAl~~Ga 189 (410)
T PRK06846 115 RAEKLIELLLSNGATIIRSHCNI-DP----VIGLKNLENTQAALERYQDGFEYEIVAFPQHGLLRSNSEPLMREAMQMGA 189 (410)
T ss_pred HHHHHHHHHHHCCCCEEEEEECC-CC----CCCHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHCC
T ss_conf 99999999997390618765544-77----51135899999999984422106689710467567447999999998589
Q ss_pred CEEEEE--CCCCC----CHHHHHHHHHHCCCEEEEEEECCCCH--HHHHHHHHHCCEEEEEEEECCCCCCCCCCHHH---
Q ss_conf 079997--06642----15899986776498259985233344--78998862014028998306776533220135---
Q gi|254780975|r 87 DIITFH--PESSP----HIRRSLRTIHAMGKKTGVAINPETPV--AILEDVIDEIDMILIMTVNPGFGGQQLIESTI--- 155 (224)
Q Consensus 87 d~i~~H--~E~~~----~~~~~i~~i~~~g~k~Giai~p~T~~--~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l--- 155 (224)
|.+--= +.... ++..++....++|.-+=+=+.-..+. -.++.++...- .-|++|+....-++
T Consensus 190 d~vGGvdP~~~d~d~~~~L~~~f~LA~~~~~~vD~HldE~~d~~~~~l~~la~~t~-------~~g~~grVt~sH~~sL~ 262 (410)
T PRK06846 190 HLVGGVDPATVDGAIEKSLDTMFQIAVEFNKGVDIHLHDTNPLGVATIKKLVETTE-------EAQWKGRVTISHAFALG 262 (410)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHH-------HHCCCCCEEEEHHHHHH
T ss_conf 67984377667857999999999999980999236315889847789999999999-------82998988837344464
Q ss_pred ----HHHHHHHHHHHCCCCEEE----EECCCCHHHHHHHHHCCCCEEEECHHH------HCCCCHHHHHHHH
Q ss_conf ----778998654313865269----815899889999996799899974266------3789989999999
Q gi|254780975|r 156 ----PKIRQAKALIGKRSISLE----VDGGVTSRNIKSLVQAGADLLVVGSSF------FNQKGEISYAKRL 213 (224)
Q Consensus 156 ----~kI~~l~~~~~~~~~~I~----vDGGvn~~~i~~l~~~Gad~~V~Gsai------f~~~d~~~~~~~l 213 (224)
....++-++..+.++.|. ...|+. -+++|.++|+++.+.+-.+ |++-|+.+.+..+
T Consensus 263 ~~~~~~~~~~~~~la~agI~vvst~P~~r~v~--pv~eL~~aGV~V~~g~Dni~Dpw~P~G~gD~Le~a~~~ 332 (410)
T PRK06846 263 DLNEEEVEELAERLAAQQISITSTVPIGRLHM--PLPLLHEKGVKVSLGTDSVTDHWSPFGTGDMLEKANLY 332 (410)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC--CHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 39999999999999985993998589989978--79999976991998268886898788888899999999
No 411
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=64.11 E-value=12 Score=18.11 Aligned_cols=178 Identities=17% Similarity=0.182 Sum_probs=89.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHC-CCCEEEEEEEEEECCHHHHHHCCCCCCEEE
Q ss_conf 588999999999996599899997342634584341--78999986412-564168567885120336764047760799
Q gi|254780975|r 14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSY-SDSVFDCHLMISSIDSHINIIADAGCDIIT 90 (224)
Q Consensus 14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~-t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~ 90 (224)
.+.-+++++.+.+.+.|.+ ||.+.-|.--.+.++ =-+.++.++++ +.+.++|-=|.. .-...+.++|+|.++
T Consensus 104 Ls~eEI~~E~~ai~~~G~k--~ILLvtGE~~~~~~~~Yi~~~v~~ik~~f~~v~iev~Pl~~---eeY~~L~~aG~d~~~ 178 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFE--HILLVTGEHEAKVGVDYIRRALPLAREYFSSVAIEVQPLSE---EEYAELVELGLDGVT 178 (371)
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCH---HHHHHHHHCCCCEEE
T ss_conf 8999999999999976952--38854057877698899999999999756740799525998---999999985998699
Q ss_pred EECCCCCCH-----------------HHHHHHHHHCCC-EEEEE--EECCCC-HHHH-----HHHHHHCCEEEEEEE---
Q ss_conf 970664215-----------------899986776498-25998--523334-4789-----988620140289983---
Q gi|254780975|r 91 FHPESSPHI-----------------RRSLRTIHAMGK-KTGVA--INPETP-VAIL-----EDVIDEIDMILIMTV--- 141 (224)
Q Consensus 91 ~H~E~~~~~-----------------~~~i~~i~~~g~-k~Gia--i~p~T~-~~~i-----~~~l~~~D~vliM~V--- 141 (224)
+-.|+-+.. .+.....-+.|+ ++|+. +..+.. .+.+ ..||..--+..-.|+
T Consensus 179 vyQETY~~~~Y~~lHp~G~K~dy~~RL~a~eRa~~aGi~~vgiGaLlGL~dwr~e~~~~~~Ha~~L~~~y~~~~~siS~P 258 (371)
T PRK09240 179 VYQETYNPATYAKHHLRGPKQDFFYRLETPERAARAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWRARYSISFP 258 (371)
T ss_pred EEEHHCCHHHHHHHCCCCCCCCCHHHCCCHHHHHHCCCCEECEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 96032599999985889985452545237888987599703611022654689999999999999998779987576357
Q ss_pred --ECCCCCCCCCCH--HHH-----HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf --067765332201--357-----78998654313865269815899889999996799899974266
Q gi|254780975|r 142 --NPGFGGQQLIES--TIP-----KIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSF 200 (224)
Q Consensus 142 --~PG~~Gq~f~~~--~l~-----kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai 200 (224)
.|-.+| |.|. +-+ -|.-+|-..|..++.+. --=+.+-=..+...|+..+-.||..
T Consensus 259 RlrP~~g~--~~p~~~vsD~~l~q~i~a~Rl~~P~~gi~lS--TRE~~~~Rd~li~lGvT~mSAgs~T 322 (371)
T PRK09240 259 RLRPCTGG--FEPKSIVSDRQLVQLICAFRLFLPDVEISLS--TRESPEFRDNLIPLGITKMSAGSST 322 (371)
T ss_pred CCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE--CCCCHHHHHHHHHHCCEEECCCCCC
T ss_conf 53368899--8898657889999999999986655561686--4789899988885256025555546
No 412
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=64.00 E-value=12 Score=18.09 Aligned_cols=123 Identities=11% Similarity=0.212 Sum_probs=64.7
Q ss_pred CHHHHHHCCCCCCEEEEE------------------CCCCC--CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC
Q ss_conf 033676404776079997------------------06642--1589998677649825998523334478998862014
Q gi|254780975|r 75 DSHINIIADAGCDIITFH------------------PESSP--HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID 134 (224)
Q Consensus 75 ~~~i~~~~~~g~d~i~~H------------------~E~~~--~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D 134 (224)
.++++.+.+.|+|.|++- +-+.. .=.+.+++.+++| -.-+.+-...+.+.+..+...++
T Consensus 82 ~~~l~~l~e~GvDaviv~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G-~~rvVl~rEls~~ei~~i~~~~~ 160 (347)
T COG0826 82 ERYLDRLVELGVDAVIVADPGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELG-AKRVVLPRELSLEEIKEIKEQTP 160 (347)
T ss_pred HHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHCC
T ss_conf 99999999759878997188999999975899868996567217899999999769-87998176489999999997288
Q ss_pred -E---EEEEEEE-CCCCCCCCCCHHHHHHHHHHHH-----------HHC-CCCEEEEECC---------CCHHHHHHHHH
Q ss_conf -0---2899830-6776533220135778998654-----------313-8652698158---------99889999996
Q gi|254780975|r 135 -M---ILIMTVN-PGFGGQQLIESTIPKIRQAKAL-----------IGK-RSISLEVDGG---------VTSRNIKSLVQ 188 (224)
Q Consensus 135 -~---vliM~V~-PG~~Gq~f~~~~l~kI~~l~~~-----------~~~-~~~~I~vDGG---------vn~~~i~~l~~ 188 (224)
. |.+-+-- ..++|+.|..+.......=+.. .+. ..-.....+| ...+.++.+.+
T Consensus 161 ~veiEvfVhGalcia~SgRC~ls~~~~~~~~n~g~c~~~~r~~~~~~~~~~~~~~~~~~g~~~~s~~dl~~~~~l~~L~~ 240 (347)
T COG0826 161 DVEIEVFVHGALCIAYSGRCLLSNYFTGRSANRGGCCQPCRWGYYLVETLCKGEVLSLNGTYLMSPKDLNLLEELPELIE 240 (347)
T ss_pred CCEEEEEEECCHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCHHHHHHHHHHHHHH
T ss_conf 86389999345354137333566642278878887677666441002566776067436407645201445776999997
Q ss_pred CCCCEEEECH
Q ss_conf 7998999742
Q gi|254780975|r 189 AGADLLVVGS 198 (224)
Q Consensus 189 ~Gad~~V~Gs 198 (224)
+|+|.+=.-+
T Consensus 241 ~GV~s~KIeG 250 (347)
T COG0826 241 AGVDSLKIEG 250 (347)
T ss_pred CCCCEEEECC
T ss_conf 5984899868
No 413
>pfam01487 DHquinase_I Type I 3-dehydroquinase. Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyses the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate giving dehydroshikimate. Dehydroquinase functions in the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Type II 3-dehydroquinase catalyses the trans-dehydration of 3-dehydroshikimate see pfam01220.
Probab=63.88 E-value=12 Score=18.08 Aligned_cols=120 Identities=16% Similarity=0.194 Sum_probs=78.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEE--EEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEE--------CCHH-
Q ss_conf 7063258899999999999659989999--7342634584341789999864125641685678851--------2033-
Q gi|254780975|r 9 PSILAADFSRLGEEISNITKAGAKQIHF--DVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISS--------IDSH- 77 (224)
Q Consensus 9 pSil~~d~~~l~~~i~~l~~~~~d~iHi--DImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~--------P~~~- 77 (224)
.||...+..+...+++.+.+ |+|.+-+ |.... +....-.+.++.+|+.+.+|+=+++=... ++.|
T Consensus 2 v~i~~~~~~~~~~~~~~~~~-~aD~vE~R~D~l~~---~~~~~i~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~ 77 (222)
T pfam01487 2 VPVTGPSLEEALAELEELKE-GADAVELRVDLLEN---VDAEDVSEQLSALRESTGLPIIFTVRTKSEGGRFEGSEEEYL 77 (222)
T ss_pred CCCCCCCHHHHHHHHHHHHH-CCCEEEEEECCCCC---CCHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCHHHHH
T ss_conf 56057999999999998610-89989998603568---787899999999998389977999687788899889999999
Q ss_pred --HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEE--CCCCH-HHHHHHHHH
Q ss_conf --67640477607999706642158999867764982599852--33344-789988620
Q gi|254780975|r 78 --INIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAIN--PETPV-AILEDVIDE 132 (224)
Q Consensus 78 --i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~--p~T~~-~~i~~~l~~ 132 (224)
+....+.|+|+|-+-+....+........++.+.++-++.+ -.||- +.+...+..
T Consensus 78 ~ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~kvI~S~H~f~~tp~~~~l~~~~~~ 137 (222)
T pfam01487 78 ELLKEALRLGPDYIDIELSSAPEELLSVIAAKKGGTKIILSYHDFEGTPSWEELLSLYEE 137 (222)
T ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 999999975898899977778136899999742897899984589899699999999999
No 414
>PRK09230 cytosine deaminase; Provisional
Probab=63.82 E-value=12 Score=18.07 Aligned_cols=182 Identities=12% Similarity=0.177 Sum_probs=100.0
Q ss_pred HHHHHHHHHHCCCCEE--EEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEE-------EC--CHHHHHHCCCCCC
Q ss_conf 9999999996599899--99734263458434178999986412564168567885-------12--0336764047760
Q gi|254780975|r 19 LGEEISNITKAGAKQI--HFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMIS-------SI--DSHINIIADAGCD 87 (224)
Q Consensus 19 l~~~i~~l~~~~~d~i--HiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~-------~P--~~~i~~~~~~g~d 87 (224)
-++.++.+-.+|.-.+ |+|+.|- .+ -+.+-+.++|+...-.+|+.+..- +| ...+++-.+.|+|
T Consensus 104 a~~~l~~~ia~Gtt~iRtHvDv~dp----~l-~~leal~~~re~~~~~idlQiVAFPQ~Gl~~~~~~~~Ll~eAl~~Gad 178 (426)
T PRK09230 104 AWQTLKWQIANGIQHVRTHVDVSDP----TL-TALKAMLEVKEEVAPWVDLQIVAFPQEGILSYPNGEALLEEALRLGAD 178 (426)
T ss_pred HHHHHHHHHHHCHHHEECCCCCCCC----HH-HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 9999999998182440133453770----35-169999999998435201688830365424688779999999980898
Q ss_pred EEE--EECCCCC-----CHHHHHHHHHHCCCEEEEEEEC-CCC-HHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHH--
Q ss_conf 799--9706642-----1589998677649825998523-334-4789988620140289983067765332201357--
Q gi|254780975|r 88 IIT--FHPESSP-----HIRRSLRTIHAMGKKTGVAINP-ETP-VAILEDVIDEIDMILIMTVNPGFGGQQLIESTIP-- 156 (224)
Q Consensus 88 ~i~--~H~E~~~-----~~~~~i~~i~~~g~k~Giai~p-~T~-~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~-- 156 (224)
.+- -|+|.+. ++..++...+++|..+=+=+.- +.+ ...++.++...- .-|++|.....-++.
T Consensus 179 vvGGvp~~~~~~~~~~~~L~~vf~LA~~~~~~vDiHldE~~d~~~~~l~~ia~~t~-------~~g~~grVt~sH~~sL~ 251 (426)
T PRK09230 179 VVGAIPHFEFTREYGVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAH-------REGMGARVTASHTTAMH 251 (426)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH-------HHCCCCCEEEECCHHHH
T ss_conf 88478997778045799999999999982998588777888833789999999999-------83899865630005453
Q ss_pred -----HHHHHHHHHHCCCCEEEE--------ECC---CC----HHHHHHHHHCCCCEEEECHHH------HCCCCHHHHH
Q ss_conf -----789986543138652698--------158---99----889999996799899974266------3789989999
Q gi|254780975|r 157 -----KIRQAKALIGKRSISLEV--------DGG---VT----SRNIKSLVQAGADLLVVGSSF------FNQKGEISYA 210 (224)
Q Consensus 157 -----kI~~l~~~~~~~~~~I~v--------DGG---vn----~~~i~~l~~~Gad~~V~Gsai------f~~~d~~~~~ 210 (224)
...++-++..+.++.+.. -|. .. .--+++|.++|+++.+.+-.+ |++-|+.+.+
T Consensus 252 ~~~~~~~~~~~~~laeagi~vvslP~tNl~LqgR~~~~p~~Rgvtpv~eL~~aGV~V~~GsDnvrD~w~P~G~~D~Le~a 331 (426)
T PRK09230 252 SYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPKRRGITRVKEMLEAGINVCFGHDDVFDPWYPLGTANMLQVL 331 (426)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 39999999999999982985785254332135656778888887789999976986998078887787489998899999
Q ss_pred HH
Q ss_conf 99
Q gi|254780975|r 211 KR 212 (224)
Q Consensus 211 ~~ 212 (224)
..
T Consensus 332 ~l 333 (426)
T PRK09230 332 HM 333 (426)
T ss_pred HH
T ss_conf 99
No 415
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=63.52 E-value=12 Score=18.04 Aligned_cols=177 Identities=17% Similarity=0.223 Sum_probs=98.0
Q ss_pred ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCC-CCCCHHHHHHHHHCCCCEEEEEEEEEECCH-HHH-HHCC
Q ss_conf 8170632588999999999996599899997342634584-341789999864125641685678851203-367-6404
Q gi|254780975|r 7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPN-ISFGADVIRSLRSYSDSVFDCHLMISSIDS-HIN-IIAD 83 (224)
Q Consensus 7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn-~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~-~i~-~~~~ 83 (224)
+.-.|...|+..+.+.-..-.++|+++|-+-+ |...-+ ...=...++.+.+.+ |+-||++.|.- .++ -+..
T Consensus 15 ~~~ai~~~d~~~i~~~A~~Q~eaGA~~LDVN~--g~~~~de~~~m~~~v~~iq~~~----~~Pl~iDS~~~~aiEaaLk~ 88 (268)
T PRK07535 15 IAEAIEEKDAAFIQKLALRQVEAGANYLDVNA--GTAVEEEPETMEWLVETVQEVV----DVPLCIDSPNPEAIEAGLKV 88 (268)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHCC----CCCEEECCCCHHHHHHHHHH
T ss_conf 99999867989999999999984999899608--9877468999999999997338----99967618989999999997
Q ss_pred CCCCEE--EEECCCCCCHHHHHHHHHHCCCE-EEEEEE----CCCC---HHHHHHHHHHCC-------EE----EEEEEE
Q ss_conf 776079--99706642158999867764982-599852----3334---478998862014-------02----899830
Q gi|254780975|r 84 AGCDII--TFHPESSPHIRRSLRTIHAMGKK-TGVAIN----PETP---VAILEDVIDEID-------MI----LIMTVN 142 (224)
Q Consensus 84 ~g~d~i--~~H~E~~~~~~~~i~~i~~~g~k-~Giai~----p~T~---~~~i~~~l~~~D-------~v----liM~V~ 142 (224)
++-.-+ ++-.| .+.++..+..++++|+. +++++. |.|. ++..+.+++.++ -+ |++++
T Consensus 89 ~~Gr~iINSis~e-~er~~~i~pLakkyga~vI~L~~de~Gip~tae~R~~ia~~i~~~a~~~Gi~~edi~~DpLv~~i- 166 (268)
T PRK07535 89 AKGRPLINSVSAE-EERLEAVLPLVKKYNAPVVALTMDDTGIPKDAEVRLAVAKKLVEKAADFGIPPDDIYIDPLVLPL- 166 (268)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCEE-
T ss_conf 7999726600388-05699999999984997999942899999999999999999999999859988998884551210-
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-------------CHHHHHHHHHCCCCEEEEC
Q ss_conf 677653322013577899865431386526981589-------------9889999996799899974
Q gi|254780975|r 143 PGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV-------------TSRNIKSLVQAGADLLVVG 197 (224)
Q Consensus 143 PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-------------n~~~i~~l~~~Gad~~V~G 197 (224)
-.+|.....+++-|+.+++.+|.-+ .=+|+ |.-=+..+..+|-|..++-
T Consensus 167 --~t~~~~~~~~leair~ik~~~P~v~----t~~GlSNiSFGlP~R~~lNs~FL~~a~~~GLd~aI~n 228 (268)
T PRK07535 167 --SAAQTAGVEVLETIRRIKELYPKVH----TTCGLSNISFGLPNRKLINRAFLVMAMGAGMDSAILD 228 (268)
T ss_pred --ECCCHHHHHHHHHHHHHHHHCCCCC----EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf --0680789999999999998787777----5245400114753389999999999998699846459
No 416
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=63.31 E-value=7.6 Score=19.33 Aligned_cols=128 Identities=16% Similarity=0.252 Sum_probs=62.7
Q ss_pred HHHHHHHHCCCCEE-----------EEEEECCEEC--CC---CC-CCHHHHHHHHHCCCCEEEEE----EEEEECCHHHH
Q ss_conf 99999996599899-----------9973426345--84---34-17899998641256416856----78851203367
Q gi|254780975|r 21 EEISNITKAGAKQI-----------HFDVMDGCFV--PN---IS-FGADVIRSLRSYSDSVFDCH----LMISSIDSHIN 79 (224)
Q Consensus 21 ~~i~~l~~~~~d~i-----------HiDImDg~fv--pn---~~-~~~~~i~~i~~~t~~~~dvH----LMv~~P~~~i~ 79 (224)
+-++.|.+.|+..+ |+...|-.|. |. -+ +..+.+-++.+.+.. --+| .+.+|| .+.+
T Consensus 16 RiiRa~relGi~tVaVyS~~D~~s~hv~~ADe~~~ig~~~~~~sYLni~~Ii~~A~~~g~-dAIhPGYGFLSEn~-~fA~ 93 (497)
T PRK08654 16 RVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNMERILEVAKKAGA-EAIHPGYGFLSENP-KFAK 93 (497)
T ss_pred HHHHHHHHCCCEEEEECCHHHHCCCCHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHCC-CEEECCHHHHHHCH-HHHH
T ss_conf 999999985993999888378548997888989984898832121689999999998099-99957776755489-9999
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECC-----CCHHHHHHHHHHCCEEEEEEEECCCCCCCCC
Q ss_conf 64047760799970664215899986776498259985233-----3447899886201402899830677653322
Q gi|254780975|r 80 IIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPE-----TPVAILEDVIDEIDMILIMTVNPGFGGQQLI 151 (224)
Q Consensus 80 ~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~-----T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~ 151 (224)
.+.++|...|--..|+.....+-. ..|..=.++|+-+-|+ ++.+........+.|=+++----|-+|....
T Consensus 94 ~~~~~Gi~fIGP~~~~I~~~GDK~-~ar~la~~~gVPvvPG~~~~v~~~~ea~~~A~~IGyPV~iKAs~GGGGrGmr 169 (497)
T PRK08654 94 ACEKEGITFIGPSSNVIEAMGSKI-NAKKLMKKAGVPVLPGTEEGIEDIEEAKEVAEEIGYPVIIKASAGGGGIGMR 169 (497)
T ss_pred HHHHCCCEEECCCHHHHHHHHCHH-HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCE
T ss_conf 999879999993999999865889-9999999809986899756679999999999864984587652688888658
No 417
>COG3749 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.86 E-value=12 Score=17.96 Aligned_cols=83 Identities=22% Similarity=0.362 Sum_probs=59.6
Q ss_pred HHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEE-CCCC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
Q ss_conf 7764982599852333447899886201402899830-6776-5332201357789986543138652698158998899
Q gi|254780975|r 106 IHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVN-PGFG-GQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNI 183 (224)
Q Consensus 106 i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~-PG~~-Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i 183 (224)
.++..-..|+-|.|+..++.+.++ +|.+-+..|. |-|. |. .+++-.-||..+.- .-.|-.=|-|=.+.+
T Consensus 48 ~rs~~~~lgV~l~Pddeve~L~~~---l~~lalVAv~FP~F~DGR-----gyS~A~LLR~RlG~-~GelRAVGDVLiDql 118 (167)
T COG3749 48 RRSRAGRLGVWLAPDDEVEALAPD---LDRLALVAVDFPAFRDGR-----GYSKAELLRSRLGF-QGELRAVGDVLIDQL 118 (167)
T ss_pred HHCCCCCCEEEECCCCCHHHHHCC---CCCCEEEEEECCCEECCC-----CCHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_conf 312366623566786556565245---444607998355340686-----40489998644154-401243455776156
Q ss_pred HHHHHCCCCEEEEC
Q ss_conf 99996799899974
Q gi|254780975|r 184 KSLVQAGADLLVVG 197 (224)
Q Consensus 184 ~~l~~~Gad~~V~G 197 (224)
+-+..+|.|.|-+-
T Consensus 119 ~~M~RcGFDaFav~ 132 (167)
T COG3749 119 PFMLRCGFDAFAVR 132 (167)
T ss_pred HHHHHCCCCEEEEC
T ss_conf 89997187401105
No 418
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=62.67 E-value=13 Score=17.94 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=27.1
Q ss_pred HHHHHHHHCCCCEEEEEEEEEECCHH---HHHHCCCCCCEEEEECCCCC--CHHHHHHHHHHCCC
Q ss_conf 99998641256416856788512033---67640477607999706642--15899986776498
Q gi|254780975|r 52 DVIRSLRSYSDSVFDCHLMISSIDSH---INIIADAGCDIITFHPESSP--HIRRSLRTIHAMGK 111 (224)
Q Consensus 52 ~~i~~i~~~t~~~~dvHLMv~~P~~~---i~~~~~~g~d~i~~H~E~~~--~~~~~i~~i~~~g~ 111 (224)
+.+++-.+.+ ..|+-+-...|..- +-+..++|.+.+.+-.|..+ |-.++.++.++.|.
T Consensus 55 ~tV~EA~~~~--~a~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~ 117 (293)
T COG0074 55 NTVEEAVKET--GANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGT 117 (293)
T ss_pred HHHHHHHHHH--CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 9999998702--89779996481778999999985799579999599988899999999986697
No 419
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=62.23 E-value=12 Score=18.13 Aligned_cols=174 Identities=18% Similarity=0.303 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHCC-----CCEEEEEEECCEECCCCCCCHHHHHH----HHHCCC-CE--EEEEEEEEECCH----HHHH
Q ss_conf 99999999999659-----98999973426345843417899998----641256-41--685678851203----3676
Q gi|254780975|r 17 SRLGEEISNITKAG-----AKQIHFDVMDGCFVPNISFGADVIRS----LRSYSD-SV--FDCHLMISSIDS----HINI 80 (224)
Q Consensus 17 ~~l~~~i~~l~~~~-----~d~iHiDImDg~fvpn~~~~~~~i~~----i~~~t~-~~--~dvHLMv~~P~~----~i~~ 80 (224)
..|.++++...... ++.+|+ --| .|++ ++++.++. |++.-+ .. .++-+-+ ||.. .++.
T Consensus 69 ~aL~~Ei~~~~~~~~~~~~v~ti~~--GGG--TPsl-L~~~~l~~ll~~l~~~~~~~~~~~EitiE~-nP~~~~~e~~~~ 142 (416)
T COG0635 69 DALLEEIELVAALLGGQREVKTIYF--GGG--TPSL-LSPEQLERLLKALRELFNDLDPDAEITIEA-NPGTVEAEKFKA 142 (416)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEE--CCC--CCCC-CCHHHHHHHHHHHHHHHCCCCCCCEEEEEE-CCCCCCHHHHHH
T ss_conf 9999999998862278872789997--698--3267-799999999999999723578882799950-888668999999
Q ss_pred HCCCCCCEEEEECCCCC--------------CHHHHHHHHHHCCC-EEEEEEE---CCCCHHHHHHHHHH-----CCEEE
Q ss_conf 40477607999706642--------------15899986776498-2599852---33344789988620-----14028
Q gi|254780975|r 81 IADAGCDIITFHPESSP--------------HIRRSLRTIHAMGK-KTGVAIN---PETPVAILEDVIDE-----IDMIL 137 (224)
Q Consensus 81 ~~~~g~d~i~~H~E~~~--------------~~~~~i~~i~~~g~-k~Giai~---p~T~~~~i~~~l~~-----~D~vl 137 (224)
+.++|+++|++=.-+-+ .....+..+++.|. .+-+-|- |....+.+..-+.. .|.|-
T Consensus 143 l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis 222 (416)
T COG0635 143 LKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLS 222 (416)
T ss_pred HHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 99829877986014599899997478887899999999998638974788724389999999999999999834998786
Q ss_pred EE--EEECCC-------CCCCCCCHHHHHHH---HHHHHHHCCCC-EEE-----EECCCCHHHHHHHHHCCCCEEEEC-H
Q ss_conf 99--830677-------65332201357789---98654313865-269-----815899889999996799899974-2
Q gi|254780975|r 138 IM--TVNPGF-------GGQQLIESTIPKIR---QAKALIGKRSI-SLE-----VDGGVTSRNIKSLVQAGADLLVVG-S 198 (224)
Q Consensus 138 iM--~V~PG~-------~Gq~f~~~~l~kI~---~l~~~~~~~~~-~I~-----vDGGvn~~~i~~l~~~Gad~~V~G-s 198 (224)
+- ++.|+. .|+ ..|..-.+.. ...+.+.+.++ .++ -.|+-...|....... |.+=.| |
T Consensus 223 ~y~L~~~p~t~~~~~~~~~~-~lP~~d~~~~~~~~~~e~L~~~Gy~~yeisnfa~~~~e~~hNl~yw~~~--~~lGiG~g 299 (416)
T COG0635 223 LYSLAIEPGTKFAQRKIKGK-ALPDEDEKADMYELVEELLEKAGYRQYEISNFAKPGGECRHNLQYWETK--DYLGIGAG 299 (416)
T ss_pred EEEEEECCCCHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCHHEECHHHCCCCHHHHHHHCCCCCC--CEEEECCC
T ss_conf 46268658856766233577-8998689999999999999977964106123127647777665156479--71786677
Q ss_pred H
Q ss_conf 6
Q gi|254780975|r 199 S 199 (224)
Q Consensus 199 a 199 (224)
|
T Consensus 300 A 300 (416)
T COG0635 300 A 300 (416)
T ss_pred C
T ss_conf 0
No 420
>KOG0053 consensus
Probab=62.13 E-value=13 Score=17.88 Aligned_cols=131 Identities=19% Similarity=0.206 Sum_probs=67.3
Q ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECC--CCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHH
Q ss_conf 6764047760799970664215899986776498259985233--344789988620-1402899830677653322013
Q gi|254780975|r 78 INIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPE--TPVAILEDVIDE-IDMILIMTVNPGFGGQQLIEST 154 (224)
Q Consensus 78 i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~--T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~ 154 (224)
+..+...|..+|++-.-- ..+...+++-+.++|+..+.- +.++.+...+.. .+.|-+=+ |+.-=+ .
T Consensus 109 l~~L~~~g~~iV~~~~~Y----~gT~~~l~~~~~~~gie~~~vd~~~~~~~~~~i~~~t~~V~~ES--PsNPll-----~ 177 (409)
T KOG0053 109 LLHLLPAGDHIVATGDVY----GGTLRILRKFLPKFGGEGDFVDVDDLKKILKAIKENTKAVFLES--PSNPLL-----K 177 (409)
T ss_pred HHHHCCCCCCEEEECCCC----CCHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHCCCCEEEEEEC--CCCCCC-----C
T ss_conf 998467898589717875----00999999999970935433041667889986266706999977--999750-----0
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC-HHHHCCC-C---------HHHHHHHHHHHHHH
Q ss_conf 5778998654313865269815899889999996799899974-2663789-9---------89999999999997
Q gi|254780975|r 155 IPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVG-SSFFNQK-G---------EISYAKRLNDLKKS 219 (224)
Q Consensus 155 l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~G-saif~~~-d---------~~~~~~~l~~l~~~ 219 (224)
..-|.+++++-+++++.+.||.-+-.--.......|||++|-. +-.|+.. | ..+.+++++.++..
T Consensus 178 v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~ 253 (409)
T KOG0053 178 VPDIEKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQED 253 (409)
T ss_pred CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHCCCCEEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 4569999998741797899957767633367121388789985101444776635147761749999999999998
No 421
>PRK08185 hypothetical protein; Provisional
Probab=62.12 E-value=13 Score=17.88 Aligned_cols=183 Identities=16% Similarity=0.186 Sum_probs=111.1
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHH---HHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCC
Q ss_conf 70632588999999999996599899997342634584341789---999864125641685678851203367640477
Q gi|254780975|r 9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGAD---VIRSLRSYSDSVFDCHLMISSIDSHINIIADAG 85 (224)
Q Consensus 9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~---~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g 85 (224)
|++=+.|+..+.--++..++.+..-+ +-+-.+.. + .+|.. .++.+.+..+.|+-+||==-.-...+....++|
T Consensus 16 ~AfNv~~~e~~~avi~AAee~~sPvI-iq~s~~~~-~--~~g~~~~~~~~~~a~~~~VpV~lHLDH~~~~e~~~~ai~~G 91 (283)
T PRK08185 16 GAFNVADSCFLRAVVEEAEANNAPAI-IAIHPNEL-D--FVGDDFFAYVRERAQRSPVPFVIHLDHGASVEDVMRAIRCG 91 (283)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEE-EEECCCHH-H--HHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCC
T ss_conf 99888999999999999999787989-99381288-7--71199999999999877998999899999999999999829
Q ss_pred CCEEEEECCCCC---C---HHHHHHHHHHCCCEE----EEE----------EE--CCCCHHHHHHHHHH--CCEEEEEEE
Q ss_conf 607999706642---1---589998677649825----998----------52--33344789988620--140289983
Q gi|254780975|r 86 CDIITFHPESSP---H---IRRSLRTIHAMGKKT----GVA----------IN--PETPVAILEDVIDE--IDMILIMTV 141 (224)
Q Consensus 86 ~d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Gia----------i~--p~T~~~~i~~~l~~--~D~vliM~V 141 (224)
-+.|-+-.-+.+ + -.++.++++..|+-+ |-. .. ..|.++....+++. +|.+ .|
T Consensus 92 FsSVM~DgS~lp~eeNi~~Tk~vv~~ah~~gv~VEaElG~vg~~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L---Av 168 (283)
T PRK08185 92 FTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSVEGGVSQIIYTDPEQAEDFVSRTGVDTL---AV 168 (283)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE---EE
T ss_conf 987986389899999999999999999865983899862367768776666420004899999999998799978---63
Q ss_pred ECCCCCCC----CCC-HHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 06776533----220-135778998654313865269815--8998899999967998999742663
Q gi|254780975|r 142 NPGFGGQQ----LIE-STIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFF 201 (224)
Q Consensus 142 ~PG~~Gq~----f~~-~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif 201 (224)
-.|..-.. ..| --+++++++++.. ++++-.-| |+..+.++++++.|+.-+-.|+-+-
T Consensus 169 aiGn~HG~Yk~~~~p~l~~~~l~~I~~~~---~vPLVLHGgSG~~~e~i~~ai~~Gv~KiNi~T~l~ 232 (283)
T PRK08185 169 AIGTAHGIYPKDKKPKLQMDILKEINERV---DIPLVLHGGSANPDAEIAESVTLGVGKINISSDMK 232 (283)
T ss_pred ECCCCCCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHCCEEEEEECHHHH
T ss_conf 32554555578898423789999999864---99989758999999999999986937998486799
No 422
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=60.77 E-value=14 Score=17.73 Aligned_cols=153 Identities=20% Similarity=0.304 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHC-----CCCEEEEEEECCEECCCCCCCHHH----HHHHHHCCCCE--EEEEEEEEECC----HHHHHH
Q ss_conf 9999999999965-----998999973426345843417899----99864125641--68567885120----336764
Q gi|254780975|r 17 SRLGEEISNITKA-----GAKQIHFDVMDGCFVPNISFGADV----IRSLRSYSDSV--FDCHLMISSID----SHINII 81 (224)
Q Consensus 17 ~~l~~~i~~l~~~-----~~d~iHiDImDg~fvpn~~~~~~~----i~~i~~~t~~~--~dvHLMv~~P~----~~i~~~ 81 (224)
..|.+|++...+. .++.+|+ -=|+ |++ ++++. +..|++..++. .|+-+-+ ||. .++..+
T Consensus 85 ~~L~~Ei~~~~~~~~~~~~v~ti~~--GGGT--Ps~-L~~~~l~~ll~~l~~~f~~~~~~EitiE~-nP~~~~~~~l~~l 158 (453)
T PRK13347 85 AALIREIRLVAALLPQRRRVSQLHW--GGGT--PTI-LNPDQFERLMAALRDAFDFAPEAEIAVEI-DPRTVTAEMLQAL 158 (453)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEE--CCCC--HHH-CCHHHHHHHHHHHHHHCCCCCCCEEEEEE-CCCCCCHHHHHHH
T ss_conf 9999999998876278980789997--8848--285-99999999999999758999996699986-7786899999999
Q ss_pred CCCCCCEEEEECCCC--------------CCHHHHHHHHHHCCCE-EEEEE---ECCCCHHHHHHHHHH-----CCEEEE
Q ss_conf 047760799970664--------------2158999867764982-59985---233344789988620-----140289
Q gi|254780975|r 82 ADAGCDIITFHPESS--------------PHIRRSLRTIHAMGKK-TGVAI---NPETPVAILEDVIDE-----IDMILI 138 (224)
Q Consensus 82 ~~~g~d~i~~H~E~~--------------~~~~~~i~~i~~~g~k-~Giai---~p~T~~~~i~~~l~~-----~D~vli 138 (224)
.++|++++++=.-+. ++..+.++.+|+.|.. +.+-| -|+..++.+..=+.. .|.|-+
T Consensus 159 ~~~GvNRlSlGVQsfd~~vl~~lgR~h~~~~~~~av~~ar~~Gf~~iniDLIyGlP~QT~~~~~~tL~~~~~l~pdhiS~ 238 (453)
T PRK13347 159 AALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAV 238 (453)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 86498658871345787899982598999999999999998189865555552489998999999999998319997885
Q ss_pred EE--EECC-CCCCCCCC-----H---HHHHHHHHHHHHHCCCCE-EEEE
Q ss_conf 98--3067-76533220-----1---357789986543138652-6981
Q gi|254780975|r 139 MT--VNPG-FGGQQLIE-----S---TIPKIRQAKALIGKRSIS-LEVD 175 (224)
Q Consensus 139 M~--V~PG-~~Gq~f~~-----~---~l~kI~~l~~~~~~~~~~-I~vD 175 (224)
-+ ..|+ +..|...+ . ..+......+.+.+.++. +++|
T Consensus 239 Y~l~~~p~~~~~qr~i~~~~LP~~~~~~~m~~~a~~~L~~~GY~~y~i~ 287 (453)
T PRK13347 239 FGYAHVPSRRKNQRLIDEAALPDAEERLRQARAAADRLLAAGYVPIGLD 287 (453)
T ss_pred CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECH
T ss_conf 2320265323565325767895999999999999999996793895143
No 423
>PRK12679 cbl transcriptional regulator Cbl; Reviewed
Probab=60.53 E-value=14 Score=17.70 Aligned_cols=139 Identities=17% Similarity=0.260 Sum_probs=68.5
Q ss_pred HHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH
Q ss_conf 899998641-2564168567885120336764047760799970664215899986776498259985233344789988
Q gi|254780975|r 51 ADVIRSLRS-YSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDV 129 (224)
Q Consensus 51 ~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~ 129 (224)
|..+..+++ +++..+++| ..+|....+.+....+|.-.+--....++. +....-......+...++.|+..-.++
T Consensus 109 P~~l~~F~~~~P~v~l~l~--~~~~~~i~~~l~~g~~Dl~i~~~~~~~~p~--l~~~p~~~~~~~lvvp~~HpLa~~~~v 184 (316)
T PRK12679 109 PEVIKAFRELFPEVRLELI--QGTPQEIATLLQNGEADIGIASERLSNDPQ--LVAFPWFRWHHSLLVPLDHPLTQITPL 184 (316)
T ss_pred CHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHCCCCCEEECCCCCCCCCC--CEEEEEEECCEEEEECCCCCCCCCCCC
T ss_conf 1999999986899538998--478799999998799885222467789976--079980553413560189951248998
Q ss_pred -HHHC-CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf -6201-4028998306776533220135778998654313865269815899889999996799899974266378
Q gi|254780975|r 130 -IDEI-DMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQ 203 (224)
Q Consensus 130 -l~~~-D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~ 203 (224)
+.++ ++=++ +-++|+++....+..+.+- .+ +.++-.+++ +.+++..++.+|.=+-++-...+..
T Consensus 185 sl~~L~~~plI-~~~~g~~~R~~id~~f~~~----G~--~p~i~~e~~---~~~~i~~~V~~GlGvailp~~a~~~ 250 (316)
T PRK12679 185 TLESIAKWPLI-TYRQGITGRSRIDDAFARK----GL--LADIVLSAQ---DSDVIKTYVALGLGIGLVAEQSSGE 250 (316)
T ss_pred CHHHHCCCCEE-EECCCCHHHHHHHHHHHHC----CC--CCCEEEEEC---CHHHHHHHHHHCCCEEECHHHHCCC
T ss_conf 99998799989-5089984999999999977----99--997799999---8999999999899099701445075
No 424
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=60.50 E-value=14 Score=17.70 Aligned_cols=123 Identities=15% Similarity=0.191 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCH---HHHHHHHHCCCCEEEEEEEEEE---CCHHHHHHCCCCCC
Q ss_conf 58899999999999659989999734263458434178---9999864125641685678851---20336764047760
Q gi|254780975|r 14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGA---DVIRSLRSYSDSVFDCHLMISS---IDSHINIIADAGCD 87 (224)
Q Consensus 14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~---~~i~~i~~~t~~~~dvHLMv~~---P~~~i~~~~~~g~d 87 (224)
.+..+..+.|+++.+.|+.. +.+.=|- | .+-+ +++++.+ +.-+.+.|-++- -+..++.+.++|.+
T Consensus 47 Ls~~e~~~~id~l~~~Gv~~--v~~tGGE--P--llr~D~~ei~~~a~---~~G~~~~l~TNG~lit~~~a~~L~~~gl~ 117 (375)
T PRK05301 47 LSTAEWIRVLREARALGVLQ--LHFSGGE--P--LLRKDLEELVAHAR---RLGLYTNLITSGVGLTEARLAALKAAGLD 117 (375)
T ss_pred CCHHHHHHHHHHHHHCCCCE--EEECCCC--C--CCCCCHHHHHHHHH---HCCCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999999999999869988--9961865--2--45668999999999---76975899606745579999999850998
Q ss_pred EEEEECCCCC---------------CHHHHHHHHHHCCCEEEEEEECC-CCHHHHHHHHHH-----CCEEEEEEEEC-CC
Q ss_conf 7999706642---------------15899986776498259985233-344789988620-----14028998306-77
Q gi|254780975|r 88 IITFHPESSP---------------HIRRSLRTIHAMGKKTGVAINPE-TPVAILEDVIDE-----IDMILIMTVNP-GF 145 (224)
Q Consensus 88 ~i~~H~E~~~---------------~~~~~i~~i~~~g~k~Giai~p~-T~~~~i~~~l~~-----~D~vliM~V~P-G~ 145 (224)
.|.+...... ...+.++.+++.|+++++..... ..++.+..+++. ++++.++.+.| |.
T Consensus 118 ~v~vSlDg~~~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~v~i~~ti~r~N~~~l~~i~~la~~lGv~~~~l~~~~~~Gr 197 (375)
T PRK05301 118 HIQLSFQDSDPELADRIAGTRGAFAQKLEVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGADRLELANTQYYGW 197 (375)
T ss_pred EEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECC
T ss_conf 89995677987787776378862999999999999749816999872305688899999999972998289876567510
No 425
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=60.45 E-value=14 Score=17.69 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=37.0
Q ss_pred EEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCC-----CHHHHHHHHHHCCEEEEEEEECC
Q ss_conf 8851203367640477607999706642158999867764982599852333-----44789988620140289983067
Q gi|254780975|r 70 MISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPET-----PVAILEDVIDEIDMILIMTVNPG 144 (224)
Q Consensus 70 Mv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T-----~~~~i~~~l~~~D~vliM~V~PG 144 (224)
+.+|| .|.+.+.++|...|--..|+....-+-+ ..|+.=.++|+-+-|++ +.+........+-|=+++----|
T Consensus 85 LSEna-~FA~~~~~~Gi~fIGP~~~~i~~~GdK~-~ar~~a~~agVPvvpgs~~~~~~~~ea~~~a~~iGyPv~iKA~~G 162 (449)
T PRK08591 85 LSENA-DFAEICEDSGFTFIGPSAETIRLMGDKV-TAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKATAG 162 (449)
T ss_pred HHCCH-HHHHHHHHCCCEEECCCHHHHHHHHCHH-HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 32589-9999999879999992999999876989-999999983999788876655689999999987499669885268
Q ss_pred CCCCCC
Q ss_conf 765332
Q gi|254780975|r 145 FGGQQL 150 (224)
Q Consensus 145 ~~Gq~f 150 (224)
-+|...
T Consensus 163 GGGrGm 168 (449)
T PRK08591 163 GGGRGM 168 (449)
T ss_pred CCCCEE
T ss_conf 987769
No 426
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=60.32 E-value=14 Score=17.68 Aligned_cols=201 Identities=15% Similarity=0.214 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH----CCCCEEEEE------EEEEECCH----------
Q ss_conf 9999999999965998999973426345843417899998641----256416856------78851203----------
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS----YSDSVFDCH------LMISSIDS---------- 76 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~----~t~~~~dvH------LMv~~P~~---------- 76 (224)
.-+++.+++..+.|++.+++=.---+....-.+..+.++.++. +...++-+| |+..+|+.
T Consensus 10 ~g~~~~~~~a~~iG~~~~qif~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~HapY~iNlas~~~~~r~~s~~~l~~ 89 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKD 89 (279)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 63999999999809989999778988768899998999999999997699737853560016899988999999999999
Q ss_pred HHHHHCCCCCCEEEEECCCCCC------HHH---HHHHHH----HCCCEEEEEEECC------CCHHHHHHHHHHCCE--
Q ss_conf 3676404776079997066421------589---998677----6498259985233------344789988620140--
Q gi|254780975|r 77 HINIIADAGCDIITFHPESSPH------IRR---SLRTIH----AMGKKTGVAINPE------TPVAILEDVIDEIDM-- 135 (224)
Q Consensus 77 ~i~~~~~~g~d~i~~H~E~~~~------~~~---~i~~i~----~~g~k~Giai~p~------T~~~~i~~~l~~~D~-- 135 (224)
-++.+.+.|+..+.+|.-+... +.+ .++.+- ..+++..|=-.++ +.++.+..+++.++.
T Consensus 90 ~l~~a~~lG~~~vv~HpG~~~~~~~~~~~~~~~~~l~~i~~~a~~~~v~l~lEn~ag~g~~~g~~~eel~~i~~~~~~~~ 169 (279)
T cd00019 90 EIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLIKEKP 169 (279)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHCCCCC
T ss_conf 99999981998899678646788889999999999999998714578579983489877622117999999998456877
Q ss_pred EEEEEEECC--C-CCCCCC--CHHHHHHHHHHHHHHCC----------CCE--EEEE-------CCCC-HHHHHHHHHCC
Q ss_conf 289983067--7-653322--01357789986543138----------652--6981-------5899-88999999679
Q gi|254780975|r 136 ILIMTVNPG--F-GGQQLI--ESTIPKIRQAKALIGKR----------SIS--LEVD-------GGVT-SRNIKSLVQAG 190 (224)
Q Consensus 136 vliM~V~PG--~-~Gq~f~--~~~l~kI~~l~~~~~~~----------~~~--I~vD-------GGvn-~~~i~~l~~~G 190 (224)
-+-+|.+.+ | +|-.+. ....+-++++.+..+.. ... --.| |-|. .+....+.+.+
T Consensus 170 ~~gvclDt~H~~aag~di~~~~~~~~~~~~~~~~iG~~~i~~iHlnDS~~~~gs~~DrH~~iG~G~I~~~~~~~~l~~~~ 249 (279)
T cd00019 170 RVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGLEYLKAIHLNDSKGELGSGKDRHEPIGEGDIDGEELFKELKKDP 249 (279)
T ss_pred CEEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 64898433776541478786888999999999871833350688645778777886466887896888799999998388
Q ss_pred CC-E-EEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 98-9-9974266378998999999999999
Q gi|254780975|r 191 AD-L-LVVGSSFFNQKGEISYAKRLNDLKK 218 (224)
Q Consensus 191 ad-~-~V~Gsaif~~~d~~~~~~~l~~l~~ 218 (224)
.. . +++-+--- .++.....+.+.-|++
T Consensus 250 ~~~~p~IlEtP~~-~~~~~~~~~~i~~lr~ 278 (279)
T cd00019 250 YQNIPLILETPSE-NRDAAKIKKEIKLLRK 278 (279)
T ss_pred CCCCCEEEECCCC-CCCHHHHHHHHHHHHH
T ss_conf 4698789968999-8760689999999962
No 427
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=59.71 E-value=14 Score=17.61 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=73.2
Q ss_pred CEEEEEEECCEECCCCCC-CHHHHHHHHHCCCC-E------------EEEEEEEEECC-------HHHHHHCCCCCCEEE
Q ss_conf 899997342634584341-78999986412564-1------------68567885120-------336764047760799
Q gi|254780975|r 32 KQIHFDVMDGCFVPNISF-GADVIRSLRSYSDS-V------------FDCHLMISSID-------SHINIIADAGCDIIT 90 (224)
Q Consensus 32 d~iHiDImDg~fvpn~~~-~~~~i~~i~~~t~~-~------------~dvHLMv~~P~-------~~i~~~~~~g~d~i~ 90 (224)
.|++++--+|.....-.- ....++.-++.... | -++|-+..+|. ..+..+.+.|.|=|.
T Consensus 30 ~W~~l~~~~g~l~~~~d~~~~~~~~~~~~~~~v~~lv~n~~~~~~~~~~~~~lL~d~~~R~~~i~~i~~~~~~~~~dGi~ 109 (298)
T cd06549 30 EWLNLTGPEGRIDVFVDPQGVAIIAAAKAHPKVLPLVQNISGGAWDGKNIARLLADPSARAKFIANIAAYLERNQADGIV 109 (298)
T ss_pred EEEEEECCCCCEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 78999838995750468016899999871795268985146778987899998379999999999999999982998399
Q ss_pred EECCCCCC-----HHHHH----HHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEE-------CC-CCCCCCCCH
Q ss_conf 97066421-----58999----867764982599852333447899886201402899830-------67-765332201
Q gi|254780975|r 91 FHPESSPH-----IRRSL----RTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVN-------PG-FGGQQLIES 153 (224)
Q Consensus 91 ~H~E~~~~-----~~~~i----~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~-------PG-~~Gq~f~~~ 153 (224)
+-+|.... ...++ ..+++.|.+..+++-+.+..-.+..+.+.+|++.+|+=+ || -+.+++.+.
T Consensus 110 iD~E~~~~~d~~~~~~fv~eL~~~l~~~g~~l~v~vp~~~~~~d~~~l~~~~D~v~lMtYD~h~~~~~pGPvA~~~Wv~~ 189 (298)
T cd06549 110 LDFEELPADDLPKYVAFLSELRRRLPAQGKQLTVTVPADEADWNLKALARNADKLILMAYDEHYQGGAPGPIASQDWFES 189 (298)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf 98678998999999999999999986629889999847986427799986578999982035888898896475668999
Q ss_pred HHHHH
Q ss_conf 35778
Q gi|254780975|r 154 TIPKI 158 (224)
Q Consensus 154 ~l~kI 158 (224)
+++..
T Consensus 190 ~l~~~ 194 (298)
T cd06549 190 NLAQA 194 (298)
T ss_pred HHHHH
T ss_conf 99999
No 428
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=59.05 E-value=14 Score=17.54 Aligned_cols=68 Identities=18% Similarity=0.327 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCC-------HHHHH----HHHHCCCCEEEEEEEEEECCHHHHHHCCCC
Q ss_conf 9999999999965998999973426345843417-------89999----864125641685678851203367640477
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG-------ADVIR----SLRSYSDSVFDCHLMISSIDSHINIIADAG 85 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~-------~~~i~----~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g 85 (224)
.-+.++++.|.++|++++++|= |.++-. .+.+. ....-.+.+..+|+.. |. +.+.+.+.+
T Consensus 151 ~~~~~e~~~l~~~g~~~iqiDE------P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vH~C~--~~-~~~~l~~~~ 221 (321)
T cd03310 151 EFLREQVKELKNRGIVVVQIDE------PSLGAVGAGAFEDLEIVDAALEEVSLKSGGDVEVHLCA--PL-DYEALLELG 221 (321)
T ss_pred HHHHHHHHHHHHCCCCEEEECC------HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEC--CC-CHHHHHHCC
T ss_conf 9999999999974998899658------46641674212269999999997155679867999805--98-899998579
Q ss_pred CCEEEEEC
Q ss_conf 60799970
Q gi|254780975|r 86 CDIITFHP 93 (224)
Q Consensus 86 ~d~i~~H~ 93 (224)
+|.+.|-.
T Consensus 222 ~d~l~~d~ 229 (321)
T cd03310 222 VDVIGFDA 229 (321)
T ss_pred CCEEEEEE
T ss_conf 97168875
No 429
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=58.95 E-value=15 Score=17.53 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=8.9
Q ss_pred EEEECCCC----CCHHHHHHHHHHCCCE
Q ss_conf 99970664----2158999867764982
Q gi|254780975|r 89 ITFHPESS----PHIRRSLRTIHAMGKK 112 (224)
Q Consensus 89 i~~H~E~~----~~~~~~i~~i~~~g~k 112 (224)
..+|.|+. +++.++-+.++++++.
T Consensus 136 ~~vH~ETSTGvln~l~~i~~~~~~~~~l 163 (368)
T PRK13479 136 ALVHCETTTGILNPLDEIAAVVKRHGKR 163 (368)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHCCCE
T ss_conf 9985067720316799999999854986
No 430
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=58.88 E-value=15 Score=17.52 Aligned_cols=98 Identities=16% Similarity=0.083 Sum_probs=61.8
Q ss_pred HHHHHHHCCC-EEEEEEECCCCHHHHHHHHHHCCE---EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE----EE
Q ss_conf 9986776498-259985233344789988620140---289983067765332201357789986543138652----69
Q gi|254780975|r 102 SLRTIHAMGK-KTGVAINPETPVAILEDVIDEIDM---ILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS----LE 173 (224)
Q Consensus 102 ~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~~~D~---vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~----I~ 173 (224)
.-.|.+..+. ++++++.-.+..+.+.+-+..... -.+.+|.|-- | .....++++++.+++.+++ +.
T Consensus 224 ~~~~~e~~~~~~~~i~ltD~~~~~~~~~~~~~~~~~~~~~~~GVR~DS-G-----d~~~~~~kvr~~ld~~G~~~~~Ii~ 297 (405)
T COG1488 224 FRAWAETYPGDKLLIALTDTYLDDAFLNAIKVAKALGDKRLDGVRLDS-G-----DPRELSEKVRAHLDKLGYDPVKIIV 297 (405)
T ss_pred HHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCC-C-----CHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 999999768997289998506527788767888861446633897799-9-----9799999999999975998508998
Q ss_pred EECCCCHHHHHHHHHCC--CCEEEECHHHHCCCC
Q ss_conf 81589988999999679--989997426637899
Q gi|254780975|r 174 VDGGVTSRNIKSLVQAG--ADLLVVGSSFFNQKG 205 (224)
Q Consensus 174 vDGGvn~~~i~~l~~~G--ad~~V~Gsaif~~~d 205 (224)
-||+.-+..+..+...| .|.+=+|+.+-++.+
T Consensus 298 Sdg~lde~~i~~l~~~g~~~d~FGvGT~L~~~~~ 331 (405)
T COG1488 298 SDGLLDEKIIALLRAFGARNDAFGVGTNLTTAKP 331 (405)
T ss_pred ECCCCHHHHHHHHHHHCCCCCEECCCHHHCCCCC
T ss_conf 3785358999999981787207656554314899
No 431
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=58.80 E-value=15 Score=17.51 Aligned_cols=138 Identities=14% Similarity=0.198 Sum_probs=82.5
Q ss_pred EEEEEECCHHHHHHCCCCCCEEEEECCCC----CCHHHHHHHH-HHCCCEEEEEEECCCCHH---HHHHHHHHCCEEEEE
Q ss_conf 67885120336764047760799970664----2158999867-764982599852333447---899886201402899
Q gi|254780975|r 68 HLMISSIDSHINIIADAGCDIITFHPESS----PHIRRSLRTI-HAMGKKTGVAINPETPVA---ILEDVIDEIDMILIM 139 (224)
Q Consensus 68 HLMv~~P~~~i~~~~~~g~d~i~~H~E~~----~~~~~~i~~i-~~~g~k~Giai~p~T~~~---~i~~~l~~~D~vliM 139 (224)
|+-+..|+....++...|-+...+-++.. .+....++.+ ...+...|+.+++++|-. .+..+-+.+|.|
T Consensus 4 d~~v~~~~~~~~~l~~l~~~~~~l~y~~~~~~~~D~~~l~e~~~~~~~i~~~i~l~~~s~~~~r~~~~kfr~~~dlI--- 80 (229)
T COG1603 4 DFNVRWPELTALELERLGYTSGVLNYQKDALFSVDKNPLREEIYGKVKIYRGITLNAESPSQLRRLVKKFRSKVDLI--- 80 (229)
T ss_pred ECCCCCCCHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHCCEEEE---
T ss_conf 23677860788999970620248987605654312677777551365156668993388699999999650410599---
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE-------EECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHH--HHH
Q ss_conf 8306776533220135778998654313865269-------8158998899999967998999742663789989--999
Q gi|254780975|r 140 TVNPGFGGQQLIESTIPKIRQAKALIGKRSISLE-------VDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEI--SYA 210 (224)
Q Consensus 140 ~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~-------vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~--~~~ 210 (224)
.|.||-- +-.|.-..+..++|- -|.|++..++..+.+.|+-.-++=+.++.+.... ...
T Consensus 81 ~V~~~~l------------kv~R~Av~~~rVDil~~p~~~r~~~gldh~~a~laa~~~valeisl~~ll~~~g~~Ra~~l 148 (229)
T COG1603 81 AVEPGSL------------KVNRAAVENKRVDILSHPETGRKDPGLDHVLARLAAEKGVALEISLRPLLRSSGYRRARLL 148 (229)
T ss_pred EECCCCH------------HHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCHHHHHHHH
T ss_conf 9846868------------9999997546755897433357775523799999996293699854776504306789999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999978
Q gi|254780975|r 211 KRLNDLKKSA 220 (224)
Q Consensus 211 ~~l~~l~~~a 220 (224)
..++++.+.+
T Consensus 149 ~~lr~~lrl~ 158 (229)
T COG1603 149 SFLRSLLRLA 158 (229)
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
No 432
>TIGR00742 yjbN TIM-barrel protein, yjbN family; InterPro: IPR004653 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) although NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA . They show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=58.70 E-value=13 Score=17.82 Aligned_cols=129 Identities=16% Similarity=0.256 Sum_probs=78.2
Q ss_pred HHHCCCHHHHHHHHHHHHH-CCCCEEEEEEECCEE-CCCCCCC----------HHHHHHHHHCCCCEEEEE-------E-
Q ss_conf 0632588999999999996-599899997342634-5843417----------899998641256416856-------7-
Q gi|254780975|r 10 SILAADFSRLGEEISNITK-AGAKQIHFDVMDGCF-VPNISFG----------ADVIRSLRSYSDSVFDCH-------L- 69 (224)
Q Consensus 10 Sil~~d~~~l~~~i~~l~~-~~~d~iHiDImDg~f-vpn~~~~----------~~~i~~i~~~t~~~~dvH-------L- 69 (224)
=|-..|...+.+-++.+++ .|.|-+=+-|-=-.. |.|--|| .+.++..++.+++|+.|- +
T Consensus 60 Qlgg~dp~~l~~ca~i~e~h~gydEiNLNVGCPSdrvQng~fGACLMg~a~lVa~cv~~M~~~v~iPvtvK~RiGId~~s 139 (326)
T TIGR00742 60 QLGGSDPNDLAKCAKIAEKHRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVEIPVTVKHRIGIDELS 139 (326)
T ss_pred EECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf 50789889999999999864587422156688312220444111111682368999999897157882242014756443
Q ss_pred --EEEEC----CHHHHHHCCCC-CCEEEEECCC-------------CCCH-HHHHHHHHHCCCEEEEEEECC-CCHHHHH
Q ss_conf --88512----03367640477-6079997066-------------4215-899986776498259985233-3447899
Q gi|254780975|r 70 --MISSI----DSHINIIADAG-CDIITFHPES-------------SPHI-RRSLRTIHAMGKKTGVAINPE-TPVAILE 127 (224)
Q Consensus 70 --Mv~~P----~~~i~~~~~~g-~d~i~~H~E~-------------~~~~-~~~i~~i~~~g~k~Giai~p~-T~~~~i~ 127 (224)
.-++. ..||+.....| +...++|+-- .+.| ...+..+|+-....-+.||-+ +..|.++
T Consensus 140 sdykndSYe~l~~Fv~~v~~~Gec~~FivHARkAwL~GlSPKeNR~IPpL~y~~VYqLKkdfp~L~i~INGGI~~~E~~k 219 (326)
T TIGR00742 140 SDYKNDSYEELCDFVEIVSGKGECQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIK 219 (326)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHH
T ss_conf 32232337899999998617886113468789998578886225787798724677652003210563357855359999
Q ss_pred HHHHHCCEEEE
Q ss_conf 88620140289
Q gi|254780975|r 128 DVIDEIDMILI 138 (224)
Q Consensus 128 ~~l~~~D~vli 138 (224)
..|.++|.|+|
T Consensus 220 ~HL~~vD~VMv 230 (326)
T TIGR00742 220 QHLSHVDGVMV 230 (326)
T ss_pred HHHHHHHHHHH
T ss_conf 76556431130
No 433
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=58.48 E-value=15 Score=17.48 Aligned_cols=160 Identities=17% Similarity=0.232 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEE-------EEE-------------------CCEECCCCCCCHHHHHHHHHCCCCE--EEE
Q ss_conf 899999999999659989999-------734-------------------2634584341789999864125641--685
Q gi|254780975|r 16 FSRLGEEISNITKAGAKQIHF-------DVM-------------------DGCFVPNISFGADVIRSLRSYSDSV--FDC 67 (224)
Q Consensus 16 ~~~l~~~i~~l~~~~~d~iHi-------DIm-------------------Dg~fvpn~~~~~~~i~~i~~~t~~~--~dv 67 (224)
...-++-.+.++++|.+.+.+ |.. |-.|.-+-+| ..+-+.++.++.++ +=+
T Consensus 21 ~~treeR~~al~~AgyN~F~L~s~dV~IDlLTDSGT~AMSd~QwAamm~gDEsYAGs~sf-~~l~~~v~difg~~~viPt 99 (459)
T PRK13237 21 MTTREEREQAIKEAGYNTFLLRSEDVYIDLLTDSGTNAMSDKQWAGMMIGDEAYAGSRNF-YHLEATVQEYYGFKHVVPT 99 (459)
T ss_pred CCCHHHHHHHHHHCCCCEECCCCCCEEEECEECCCCCCCCHHHHHHHHHCCHHHHCCCCH-HHHHHHHHHHCCCCEEEEC
T ss_conf 999999999999818983037656614665115884426799999987304555324018-9999999997299524066
Q ss_pred EEEEEECCHH-HHHHCCCCCCEE--EEECCCCCCHHHHHHHHHHCCCEE-----EEE--------EECCCCHHHHHHHHH
Q ss_conf 6788512033-676404776079--997066421589998677649825-----998--------523334478998862
Q gi|254780975|r 68 HLMISSIDSH-INIIADAGCDII--TFHPESSPHIRRSLRTIHAMGKKT-----GVA--------INPETPVAILEDVID 131 (224)
Q Consensus 68 HLMv~~P~~~-i~~~~~~g~d~i--~~H~E~~~~~~~~i~~i~~~g~k~-----Gia--------i~p~T~~~~i~~~l~ 131 (224)
| ----.|+. +..+.+.| +++ -.|.+++. ..+...|.++ -=+ +.-+-+++.++.++.
T Consensus 100 H-QGRaAE~IL~~~l~k~G-~~vp~N~hFdTTr------ahie~~G~~~~dl~~~ea~d~~~~~pFKGN~Dl~kLe~~i~ 171 (459)
T PRK13237 100 H-QGRGAENLLSRIAIKPG-QYVPGNMYFTTTR------YHQELNGGIFVDIIIDEAHDAQSLHPFKGNVDLDKLQKLID 171 (459)
T ss_pred C-CCHHHHHHHHHHHCCCC-CEECCCCCCCCHH------HHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 7-76668999999971589-8957886866408------99996598787413520258677889688779999999998
Q ss_pred HC--CE--EEEEEE-ECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
Q ss_conf 01--40--289983-0677653322013577899865431386526981589988999999
Q gi|254780975|r 132 EI--DM--ILIMTV-NPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLV 187 (224)
Q Consensus 132 ~~--D~--vliM~V-~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~ 187 (224)
.. |. ..+|++ +=.-+|||+ +++.+++.+++.+++++.+..|..-=.||+--++
T Consensus 172 ~~g~~~I~~v~~tiTnN~~GGQPV---Sm~Nir~v~~la~~~gipl~lDaaRfaENAyFIk 229 (459)
T PRK13237 172 EVGAENIAYICLAVTVNLAGGQPV---SMANMRAVRELCDKHGIKVFFDATRCVENAYFIK 229 (459)
T ss_pred HHCCCCEEEEEEEEEECCCCCCCC---CHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH
T ss_conf 748556008999985268788064---6899999999999809969987667887689998
No 434
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830 Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=58.25 E-value=15 Score=17.45 Aligned_cols=140 Identities=19% Similarity=0.178 Sum_probs=82.4
Q ss_pred HHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCC----------C-------HHHHHHHHHHCCCEE
Q ss_conf 89999864125641685678851203367640477607999706642----------1-------589998677649825
Q gi|254780975|r 51 ADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSP----------H-------IRRSLRTIHAMGKKT 113 (224)
Q Consensus 51 ~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~----------~-------~~~~i~~i~~~g~k~ 113 (224)
.+.+|.|.+...+..|+==.+-=-.+=||.-++||+|.|+.-.-+++ . ..+.++|+|++|..+
T Consensus 51 ~~aiK~I~~~vGLnAEI~~l~RA~k~DID~AidcgvdsIh~fiaTSpiH~KYKl~~K~~devle~~veAvEYAKEHGLiV 130 (371)
T TIGR02090 51 FEAIKKIAEEVGLNAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKNKSRDEVLEKAVEAVEYAKEHGLIV 130 (371)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 78999999862896355101026731001564369877899804885787234888789999999999898775257355
Q ss_pred EEEEECC--CCHHHHHHHHHH-----CCEEEEEEEECCCCCCCCCC-HHHHHHHHHHHHHHC-C--CCEEEEECCCCHHH
Q ss_conf 9985233--344789988620-----14028998306776533220-135778998654313-8--65269815899889
Q gi|254780975|r 114 GVAINPE--TPVAILEDVIDE-----IDMILIMTVNPGFGGQQLIE-STIPKIRQAKALIGK-R--SISLEVDGGVTSRN 182 (224)
Q Consensus 114 Giai~p~--T~~~~i~~~l~~-----~D~vliM~V~PG~~Gq~f~~-~~l~kI~~l~~~~~~-~--~~~I~vDGGvn~~~ 182 (224)
-.+=-=. |++++|-++.+. .|+|.+= =+-|.- .| .+.+-+|++++-.++ . ++.|.=|=|.=.-|
T Consensus 131 EfSAEDATRtd~dfLIk~~k~A~eAGADRi~~~-DTVGV~----~P~km~~l~k~~k~~~kKd~~~sVHCHNDFGlAtAN 205 (371)
T TIGR02090 131 EFSAEDATRTDIDFLIKVFKKAEEAGADRINVA-DTVGVL----TPQKMEELIKKIKENVKKDLPVSVHCHNDFGLATAN 205 (371)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC-CCCCCC----CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
T ss_conf 317788765867899999871332167775507-855636----826799999999986358870588620860188999
Q ss_pred HHHHHHCCCCEEE
Q ss_conf 9999967998999
Q gi|254780975|r 183 IKSLVQAGADLLV 195 (224)
Q Consensus 183 i~~l~~~Gad~~V 195 (224)
----+.+||.-+=
T Consensus 206 si~gv~aGA~~vH 218 (371)
T TIGR02090 206 SIAGVLAGAEQVH 218 (371)
T ss_pred HHHHHHCCCEEEE
T ss_conf 9999722835773
No 435
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=58.16 E-value=15 Score=17.44 Aligned_cols=164 Identities=13% Similarity=0.166 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHC-CCCEEEEEEEEEECC---------HHHHHHCCC
Q ss_conf 8899999999999659989999734263458434178999986412-564168567885120---------336764047
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY-SDSVFDCHLMISSID---------SHINIIADA 84 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~~P~---------~~i~~~~~~ 84 (224)
....+.+-.++..++++.-+-+ .|..++..++. ...++-+.--+.=|. .-++...+.
T Consensus 20 T~~~i~~lc~~A~~~~~aaVCV-------------~P~~V~~a~~~L~~s~v~v~tVigFP~G~~~~~~K~~E~~~ai~~ 86 (221)
T PRK00507 20 TEEDIDKLCEEAKEYGFASVCV-------------NPSYVKLAAELLKGSDVKVCTVIGFPLGASTTAVKAFEAKDAIAN 86 (221)
T ss_pred CHHHHHHHHHHHHHHCCCEEEE-------------CHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999999999999879948998-------------989999999984489986557813699999576899999999985
Q ss_pred CCCEEEEECCC-------CCCHHHHHHHHHHC--C--CEEEEEEECCCCHHHHHHHHH-----HCCEEEEEEEECCCCCC
Q ss_conf 76079997066-------42158999867764--9--825998523334478998862-----01402899830677653
Q gi|254780975|r 85 GCDIITFHPES-------SPHIRRSLRTIHAM--G--KKTGVAINPETPVAILEDVID-----EIDMILIMTVNPGFGGQ 148 (224)
Q Consensus 85 g~d~i~~H~E~-------~~~~~~~i~~i~~~--g--~k~Giai~p~T~~~~i~~~l~-----~~D~vliM~V~PG~~Gq 148 (224)
|+|-|-+=..- .+...+.+..+++. + .|+-|-...-|+ +.+..... -.|+|-- -.||+..
T Consensus 87 GAdEiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~Lt~-~ei~~a~~~~~~aGadfvKT---STGf~~~ 162 (221)
T PRK00507 87 GADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGKVLKVIIETCLLTD-EEKVKACEICKEAGADFVKT---STGFSTG 162 (221)
T ss_pred CCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH-HHHHHHHHHHHHHCCCEEEE---CCCCCCC
T ss_conf 9987774025999975848899999999998727673699974465999-99999999999829787860---5887889
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHH
Q ss_conf 3220135778998654313865269815899-88999999679989997426
Q gi|254780975|r 149 QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSS 199 (224)
Q Consensus 149 ~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsa 199 (224)
..+.+.|+-+++..+. .+.|-+-|||+ .+++..++++|++++=..|+
T Consensus 163 ---gat~e~v~~m~~~~~~-~~giKasGGIrt~~~a~~~l~aGa~riGtS~~ 210 (221)
T PRK00507 163 ---GATVEDVKLMRETVGP-RVGVKASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred ---CCCHHHHHHHHHHHCC-CCEEECCCCCCCHHHHHHHHHHCCHHCCCCCH
T ss_conf ---9899999999997287-86386778989999999999827513216758
No 436
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=57.90 E-value=15 Score=17.42 Aligned_cols=145 Identities=17% Similarity=0.221 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC-C--------HHHHHHHHHCCCCEEEEEEEEEECC-HHHHHHC
Q ss_conf 2588999999999996599899997342634584341-7--------8999986412564168567885120-3367640
Q gi|254780975|r 13 AADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF-G--------ADVIRSLRSYSDSVFDCHLMISSID-SHINIIA 82 (224)
Q Consensus 13 ~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~-~--------~~~i~~i~~~t~~~~dvHLMv~~P~-~~i~~~~ 82 (224)
..+.....+..+.+.+.|+|.|-+=-. .--|+... + ...++.|++.++.++ -++.-. ..++...
T Consensus 20 ~~~~~~a~~~a~~~i~~GAdiIDIG~e--STrPg~~~i~~~eE~~Rl~pvl~~i~~~~~v~i----SIDT~~~~Va~~al 93 (258)
T cd00423 20 FLSLDKALEHARRMVEEGADIIDIGGE--STRPGAEPVSVEEELERVIPVLRALAGEPDVPI----SVDTFNAEVAEAAL 93 (258)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCC--CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE----EEECCCHHHHHHHH
T ss_conf 789999999999999879999997987--789999747778888885005688742799609----99798889999999
Q ss_pred CCCCCEEE-EECCCCCCHHHHHHHHHHCCCEEEEEEECCCC------------HHHHHHHHHH-CCEEE-------EEEE
Q ss_conf 47760799-97066421589998677649825998523334------------4789988620-14028-------9983
Q gi|254780975|r 83 DAGCDIIT-FHPESSPHIRRSLRTIHAMGKKTGVAINPETP------------VAILEDVIDE-IDMIL-------IMTV 141 (224)
Q Consensus 83 ~~g~d~i~-~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~------------~~~i~~~l~~-~D~vl-------iM~V 141 (224)
++|+++|- +..... + .+.+..+.++++.+-+.-++.+| ++.+..++.. ++... =.-+
T Consensus 94 ~~G~~iINDVsg~~~-d-~~m~~~va~~~~~~ilmH~~~~p~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~Gi~~~~Iii 171 (258)
T cd00423 94 KAGADIINDVSGGRG-D-PEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIIL 171 (258)
T ss_pred HCCCCEEECCHHHHC-C-HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEEE
T ss_conf 859986824003106-5-57999999749988983057886556668986648999999999999999986999300887
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 067765332201357789986543
Q gi|254780975|r 142 NPGFGGQQLIESTIPKIRQAKALI 165 (224)
Q Consensus 142 ~PG~~Gq~f~~~~l~kI~~l~~~~ 165 (224)
+||++=.+-.+..+.-++.+..+.
T Consensus 172 DPGiGFgK~~~~n~~ll~~l~~~~ 195 (258)
T cd00423 172 DPGIGFGKTEEHNLELLRRLDAFR 195 (258)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 477677888788999999799997
No 437
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=57.64 E-value=15 Score=17.39 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=45.4
Q ss_pred CCCCEEEEECCCCC-CHHHHHHHHHHCCCEEEEE----EECCCCHHHHHHHHHHCCEEEEEEEECCCCCC
Q ss_conf 77607999706642-1589998677649825998----52333447899886201402899830677653
Q gi|254780975|r 84 AGCDIITFHPESSP-HIRRSLRTIHAMGKKTGVA----INPETPVAILEDVIDEIDMILIMTVNPGFGGQ 148 (224)
Q Consensus 84 ~g~d~i~~H~E~~~-~~~~~i~~i~~~g~k~Gia----i~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq 148 (224)
-.++++.+-+-++. ...+.++.+++.|.++|+. +.| -|.+.+.+++..++.|+++=-+ .||
T Consensus 244 ~da~~~ii~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~P-fP~~~i~~~l~~~~~viVvE~n---~Gq 309 (350)
T PRK07119 244 DDAELVLVAYGTSSRIAKSAVDMAREEGIKVGLFRPITLWP-FPEKALEKLADKVKGFLSVEMS---NGQ 309 (350)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCEECEEEECEECC-CCHHHHHHHHHCCCEEEEECCC---CCH
T ss_conf 88999999956346899999999997598126687651068-9999999999469989998588---868
No 438
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=57.40 E-value=15 Score=17.36 Aligned_cols=197 Identities=13% Similarity=0.069 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECC-EECCCCCCCHHHHHHHHHC-CCCEEEEEEEEE-----------ECC--------
Q ss_conf 9999999999965998999973426-3458434178999986412-564168567885-----------120--------
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDG-CFVPNISFGADVIRSLRSY-SDSVFDCHLMIS-----------SID-------- 75 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg-~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~-----------~P~-------- 75 (224)
+.++++++.+.++|+|++-+-+-.. ...+.+.|+.+.+++|++. -+.-+.+|-|+- +|.
T Consensus 16 ~sw~e~f~~Ak~~Gfd~IE~siDe~d~~~~~l~~~~~~~~~i~~~~~~~gl~I~s~~~s~~~~~pl~s~d~~~r~~~le~ 95 (284)
T PRK13210 16 LSWPERLVLAKECGFDFVEMSVDETDERLARLDWSKEERLELVKAIYETGVRIPSMCLSAHRRFPFGSRDEATRERALEI 95 (284)
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999869988999606754222578999899999999999829835664155666899999898999999999
Q ss_pred --HHHHHHCCCCCCEEEEEC-----CCCC---------CHHHHHHHHHHCCCEEEEEEECC---CCHHHHHHHHHHCCEE
Q ss_conf --336764047760799970-----6642---------15899986776498259985233---3447899886201402
Q gi|254780975|r 76 --SHINIIADAGCDIITFHP-----ESSP---------HIRRSLRTIHAMGKKTGVAINPE---TPVAILEDVIDEIDMI 136 (224)
Q Consensus 76 --~~i~~~~~~g~d~i~~H~-----E~~~---------~~~~~i~~i~~~g~k~Giai~p~---T~~~~i~~~l~~~D~v 136 (224)
+.++...+.|++.|.+.. |... .+.+...++.++|+..++=.-.. .+++....+++.++.=
T Consensus 96 l~kaI~lA~~LGi~~I~l~g~dv~~~~~~~~~~~rf~e~l~~~~~~Ae~~gV~L~iE~~~~~f~~t~~~~~~~i~~v~sp 175 (284)
T PRK13210 96 MKKAIRLAQDLGIRTIQLAGYDVYYEEKDEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTPFMNSISKWKKWDEEIDSP 175 (284)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99999999980997899688766668698899999999999999999983998999956765547799999999964998
Q ss_pred EEEEEE--CCCCCCCCCCHHHHHHHHHHHHHHCCCCE-------------EEE---ECCCCH-HHHHHHHHCCCCE-EEE
Q ss_conf 899830--67765332201357789986543138652-------------698---158998-8999999679989-997
Q gi|254780975|r 137 LIMTVN--PGFGGQQLIESTIPKIRQAKALIGKRSIS-------------LEV---DGGVTS-RNIKSLVQAGADL-LVV 196 (224)
Q Consensus 137 liM~V~--PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~-------------I~v---DGGvn~-~~i~~l~~~Gad~-~V~ 196 (224)
-+ .++ .|.. +.+..+..+-++.....+.+-.++ -.| .|-|+. +-+..|.+.|-+. ++.
T Consensus 176 ~l-~v~~DiGn~-~~~g~d~~~ei~~~~~~I~~vHiKDt~~~~~~~~G~f~~vp~G~G~vDf~~~~~~L~~~gY~G~~~i 253 (284)
T PRK13210 176 WF-TVYPDVGNL-SAWGNDVWSELKLGIDRIAAIHLKDTYAVTETSPGQFRDVPFGEGCVDFVGIFKTLKELNYRGPFLI 253 (284)
T ss_pred CE-EEEECCCCH-HHCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 36-999545516-5417999999998644525887532435567888742005889876588999999998199632799
Q ss_pred CHHHHCCCCHHHHHHHHHH
Q ss_conf 4266378998999999999
Q gi|254780975|r 197 GSSFFNQKGEISYAKRLND 215 (224)
Q Consensus 197 Gsaif~~~d~~~~~~~l~~ 215 (224)
-=.==+.+||.+.+++-++
T Consensus 254 E~w~~~~~~~~~~i~~a~~ 272 (284)
T PRK13210 254 EMWTEKAEEPVAEIIQARR 272 (284)
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9924899787999999999
No 439
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=56.62 E-value=16 Score=17.28 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=49.9
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH---CCCCEEEEE------EEEEECCHH----------HH
Q ss_conf 99999999965998999973426345843417899998641---256416856------788512033----------67
Q gi|254780975|r 19 LGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS---YSDSVFDCH------LMISSIDSH----------IN 79 (224)
Q Consensus 19 l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~---~t~~~~dvH------LMv~~P~~~----------i~ 79 (224)
+.+.+++..+.|++.+++...--+.+....+.++.++.+++ ..++++=+| |...+|+.+ ++
T Consensus 12 ~~~a~~~a~~~g~~~~QiF~~~pr~w~~~~~~~~~~~~f~~~~~~~~i~~~~Ha~YlINLas~~~e~~~kS~~~l~~el~ 91 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIK 91 (273)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999985998999978898889999999999999999999839966864421004579988999999999999999
Q ss_pred HHCCCCCCEEEEECCC
Q ss_conf 6404776079997066
Q gi|254780975|r 80 IIADAGCDIITFHPES 95 (224)
Q Consensus 80 ~~~~~g~d~i~~H~E~ 95 (224)
.+...|++.+.+|.-+
T Consensus 92 ~~~~lG~~~vV~HpGs 107 (273)
T smart00518 92 RCEELGIKALVFHPGS 107 (273)
T ss_pred HHHHHCCCEEEECCCC
T ss_conf 9998099858734531
No 440
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=56.43 E-value=16 Score=17.26 Aligned_cols=88 Identities=11% Similarity=0.208 Sum_probs=56.0
Q ss_pred HHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCC--
Q ss_conf 999999996599899997342634584341789999864125641685678851203367640477607999706642--
Q gi|254780975|r 20 GEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSP-- 97 (224)
Q Consensus 20 ~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~-- 97 (224)
+..+..+-..+..++|.-. .+|-++-.|+.+ +.+..+|.- --||..|.+.|.++|+.+++.-+++-+
T Consensus 13 ~wy~~~l~~e~~~~~~~h~--~Tyg~q~~f~~~--~f~~~Ftae-------~wDP~eWar~fK~AGAKyvilvakHHDGF 81 (430)
T COG3669 13 EWYLAYLYQEGSPFYHFHP--NTYGDQEWFGGQ--EFPPRFTAE-------NWDPREWARLFKEAGAKYVILVAKHHDGF 81 (430)
T ss_pred HHHHHHHHHHCCCEEECCC--CCCCCCCCCCCC--CCCCCCCCC-------CCCHHHHHHHHHHCCCCEEEEEEEECCCE
T ss_conf 8899987641483487044--555673346743--363204724-------58989999999971884799865403770
Q ss_pred -------------------CH-HHHHHHHHHCCCEEEEEEE
Q ss_conf -------------------15-8999867764982599852
Q gi|254780975|r 98 -------------------HI-RRSLRTIHAMGKKTGVAIN 118 (224)
Q Consensus 98 -------------------~~-~~~i~~i~~~g~k~Giai~ 118 (224)
|+ .+.-+.++++|..+||.++
T Consensus 82 aLw~t~ys~wnsvk~GpKrDlVgela~Avr~qGL~FGVy~s 122 (430)
T COG3669 82 ALWPTDYSVWNSVKRGPKRDLVGELAKAVREQGLRFGVYLS 122 (430)
T ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEC
T ss_conf 42366530001554077511899999999972871567604
No 441
>PRK07178 acetyl-CoA carboxylase; Validated
Probab=56.43 E-value=13 Score=17.89 Aligned_cols=79 Identities=15% Similarity=0.229 Sum_probs=41.2
Q ss_pred EEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCC-----CHHHHHHHHHHCCEEEEEEEECC
Q ss_conf 8851203367640477607999706642158999867764982599852333-----44789988620140289983067
Q gi|254780975|r 70 MISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPET-----PVAILEDVIDEIDMILIMTVNPG 144 (224)
Q Consensus 70 Mv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T-----~~~~i~~~l~~~D~vliM~V~PG 144 (224)
+.+|| .|.+.+.++|...|--..++....-+-. ..|+.-.++|+-+-|++ .++........+.|=+++----|
T Consensus 84 LSEn~-~FA~~~~~~gi~FIGPs~~~i~~~GdK~-~ar~~a~~~gvPv~pgs~~~v~~~eea~~~A~~iGyPV~lKAa~G 161 (471)
T PRK07178 84 LSENA-ELAEICAERGIKFIGPSADVIRRMGDKT-EARRSMIKAGVPVTPGSEGNLADIDEALAEAERIGYPVMLKATSG 161 (471)
T ss_pred HHCCH-HHHHHHHHCCCEEECCCHHHHHHHHCHH-HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 11598-9999999789989995999999874839-899999986998268968865669999999986698158632026
Q ss_pred CCCCCC
Q ss_conf 765332
Q gi|254780975|r 145 FGGQQL 150 (224)
Q Consensus 145 ~~Gq~f 150 (224)
.+|...
T Consensus 162 GGGrGm 167 (471)
T PRK07178 162 GGGRGI 167 (471)
T ss_pred CCCCCE
T ss_conf 876644
No 442
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=56.30 E-value=12 Score=17.94 Aligned_cols=26 Identities=38% Similarity=0.676 Sum_probs=21.2
Q ss_pred EEEEECCCCHH-HHHHHHHCCCCEEEE
Q ss_conf 26981589988-999999679989997
Q gi|254780975|r 171 SLEVDGGVTSR-NIKSLVQAGADLLVV 196 (224)
Q Consensus 171 ~I~vDGGvn~~-~i~~l~~~Gad~~V~ 196 (224)
...+|||+... =+..+.+.|+|.+|+
T Consensus 146 ~~y~DGG~~~n~Pi~~~~~~g~~~ivv 172 (175)
T cd07205 146 QLLVDGGVLNNLPVDVLRELGADIIIA 172 (175)
T ss_pred EEEEECCCCCCCCHHHHHHCCCCEEEE
T ss_conf 899967807653299999879498999
No 443
>PRK05481 lipoyl synthase; Provisional
Probab=56.06 E-value=16 Score=17.22 Aligned_cols=129 Identities=20% Similarity=0.281 Sum_probs=63.2
Q ss_pred EEECCHHHHHHCCCCCCEEEEECCCCCC--------HHHHHHHHHHCCCEEEE-EEECCCC--HHH-HHHHHHH-CCEE-
Q ss_conf 8512033676404776079997066421--------58999867764982599-8523334--478-9988620-1402-
Q gi|254780975|r 71 ISSIDSHINIIADAGCDIITFHPESSPH--------IRRSLRTIHAMGKKTGV-AINPETP--VAI-LEDVIDE-IDMI- 136 (224)
Q Consensus 71 v~~P~~~i~~~~~~g~d~i~~H~E~~~~--------~~~~i~~i~~~g~k~Gi-ai~p~T~--~~~-i~~~l~~-~D~v- 136 (224)
-.+|.+..+.....|-+++.+-.-+-+| ..+++..||+..-.+.+ +|-|+-. .+. +..+++. .|.+
T Consensus 81 ~~EP~~vA~av~~m~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~iEvLiPDF~G~~~~~l~~v~~a~PdV~n 160 (289)
T PRK05481 81 PDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELSPGTTIEVLIPDFRGRKDAALEIVVAAPPDVFN 160 (289)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCHHHHH
T ss_conf 03079999999982897699963416666565549999999999855999779970721146999999999856717764
Q ss_pred -EEE-------EEECCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECCCCH----HHHHHHHHCCCCEEEECHHHHC
Q ss_conf -899-------830677653322013577899865431386--52698158998----8999999679989997426637
Q gi|254780975|r 137 -LIM-------TVNPGFGGQQLIESTIPKIRQAKALIGKRS--ISLEVDGGVTS----RNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 137 -liM-------~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~--~~I~vDGGvn~----~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
.+= .|.|+.. -..+++-++.++++.+.-- -.|++-=|=+. +++..|.++|+|++..|-++=-
T Consensus 161 HNiETV~rL~~~VRp~a~----Y~rSL~vL~~~k~~~p~~~TKSgiMvGLGEt~eEv~~~~~DL~~~gvdilTiGQYL~P 236 (289)
T PRK05481 161 HNLETVPRLYKRVRPGAD----YERSLELLKRAKELDPGIPTKSGLMVGLGETDEEVLEVMDDLRAHGVDILTIGQYLQP 236 (289)
T ss_pred CCHHHHHHHCCCCCCCCH----HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 351310443623388233----8999999999997489982413567755788999999999999819989983403588
Q ss_pred C
Q ss_conf 8
Q gi|254780975|r 203 Q 203 (224)
Q Consensus 203 ~ 203 (224)
+
T Consensus 237 s 237 (289)
T PRK05481 237 S 237 (289)
T ss_pred C
T ss_conf 8
No 444
>PRK12376 putative translaldolase; Provisional
Probab=55.80 E-value=16 Score=17.20 Aligned_cols=145 Identities=12% Similarity=0.210 Sum_probs=82.9
Q ss_pred HHHHHHHH-CCCCEEEEEEEEEECCHHHHH---HCCCCCCEEEEECCCC----CCHHHHHHHHHHCCCEEEEEE--ECCC
Q ss_conf 99998641-256416856788512033676---4047760799970664----215899986776498259985--2333
Q gi|254780975|r 52 DVIRSLRS-YSDSVFDCHLMISSIDSHINI---IADAGCDIITFHPESS----PHIRRSLRTIHAMGKKTGVAI--NPET 121 (224)
Q Consensus 52 ~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~---~~~~g~d~i~~H~E~~----~~~~~~i~~i~~~g~k~Giai--~p~T 121 (224)
..++++.+ .++.|+.+-.+..+++..+++ +...|. .+.+-.-.+ ..-...++.+.+.|+++-+.+ ++.+
T Consensus 49 ~~~~~i~~~i~~~~is~EV~~~~~~~mi~qA~~l~~~~~-nv~VKIP~t~~~G~~~~~~ik~L~~~Gi~vnvTaifs~~Q 127 (238)
T PRK12376 49 AFAKEVLAEIPDYPISFEVFADDLETMEKEAEILASLGE-NVYVKIPITNTKGESTIPLIKKLSADGIKLNVTAIFTIEQ 127 (238)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECHHH
T ss_conf 999999963899877999956877889999999997589-7799977857551899999999988799668999827999
Q ss_pred CHHHHHHHHHHC-CEEEEEE-E--ECCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 447899886201-4028998-3--067765332201357789986543138-6526981589988999999679989997
Q gi|254780975|r 122 PVAILEDVIDEI-DMILIMT-V--NPGFGGQQLIESTIPKIRQAKALIGKR-SISLEVDGGVTSRNIKSLVQAGADLLVV 196 (224)
Q Consensus 122 ~~~~i~~~l~~~-D~vliM~-V--~PG~~Gq~f~~~~l~kI~~l~~~~~~~-~~~I~vDGGvn~~~i~~l~~~Gad~~V~ 196 (224)
-.....-.-... .||-... - +-|.. ....|+++++++.++ +.+|-+--==+..++.++..+|+|++.+
T Consensus 128 a~~a~~A~a~~~a~yvSpfvGRi~D~G~D-------g~~~i~~~~~i~~~~~~tkILaASiR~~~~v~~a~~~GadiiTi 200 (238)
T PRK12376 128 VKEVVDALTPGVPSIVSVFAGRIADTGVD-------PLPLMKEALKICHQKPGVELLWASPRELYNIIQADQLGCDIITV 200 (238)
T ss_pred HHHHHHHCCCCCCEEEEEECCHHHHCCCC-------CHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCEEEC
T ss_conf 99999852777882775121308655998-------27999999999842887499997148889999999869999984
Q ss_pred CHHHHCCC
Q ss_conf 42663789
Q gi|254780975|r 197 GSSFFNQK 204 (224)
Q Consensus 197 Gsaif~~~ 204 (224)
...+|++-
T Consensus 201 pp~vl~kl 208 (238)
T PRK12376 201 TADILKKL 208 (238)
T ss_pred CHHHHHHH
T ss_conf 99999986
No 445
>pfam04263 TPK_catalytic Thiamin pyrophosphokinase, catalytic domain. Family of thiamin pyrophosphokinase (EC:2.7.6.2). Thiamin pyrophosphokinase (TPK) catalyses the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggest that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=55.77 E-value=9 Score=18.85 Aligned_cols=112 Identities=20% Similarity=0.183 Sum_probs=52.0
Q ss_pred HHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH
Q ss_conf 89999864125641685678851203367640477607999706642158999867764982599852333447899886
Q gi|254780975|r 51 ADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVI 130 (224)
Q Consensus 51 ~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l 130 (224)
|++++.+-+.. +..+.+.--.+++.+.-..-+|.++=-..+.. .+..++.++.+.+. ...|+.....++.-+
T Consensus 5 P~~~~~l~~~a----~~iIa~DgGa~~l~~~~~i~Pd~iiGDfDSi~--~~~~~~~~~~~~~~--~~~~dkD~TD~ekAl 76 (122)
T pfam04263 5 PDFVRDLWKNA----DLRVAADGGANHLRDFLSLKPDFVVGDFDSIT--EELRAYYKEAGVNL--IHFPEKDDTDLELAL 76 (122)
T ss_pred HHHHHHHHHHC----CEEEEECCHHHHHHHHCCCCCCEEECCCCCCC--HHHHHHHHHCCCEE--EECCCCCCCHHHHHH
T ss_conf 07899999868----99999724999999928989898971778998--58999998569728--878566756899999
Q ss_pred H-----HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEEC
Q ss_conf 2-----0140289983067765332201357789986543138652-69815
Q gi|254780975|r 131 D-----EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS-LEVDG 176 (224)
Q Consensus 131 ~-----~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~-I~vDG 176 (224)
. ..+.|.++ |..|..+. ..+..+.-+-++.. .+.. +-+||
T Consensus 77 ~~~~~~~~~~i~i~----G~~GgR~D-H~lanl~~L~k~~~-~~~~i~l~d~ 122 (122)
T pfam04263 77 DEALELGADEIVIL----GALGGRLD-HALANLNLLLRLAY-TDNTIFLLDG 122 (122)
T ss_pred HHHHHCCCCEEEEE----CCCCCCHH-HHHHHHHHHHHHHH-CCCEEEEECC
T ss_conf 99997799989998----88899776-99999999999984-6984998149
No 446
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=55.77 E-value=16 Score=17.19 Aligned_cols=52 Identities=15% Similarity=0.296 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHCCC---CEEEEECCCCHHHHHHHHHCCC--CEEEECHHHHCCCC
Q ss_conf 3577899865431386---5269815899889999996799--89997426637899
Q gi|254780975|r 154 TIPKIRQAKALIGKRS---ISLEVDGGVTSRNIKSLVQAGA--DLLVVGSSFFNQKG 205 (224)
Q Consensus 154 ~l~kI~~l~~~~~~~~---~~I~vDGGvn~~~i~~l~~~Ga--d~~V~Gsaif~~~d 205 (224)
...-++++|+.+++.+ .+|.+-||+|.+.+..+.+.|+ |.+=+|+.+-+..+
T Consensus 260 ~~~~~~~~r~~ld~~G~~~~kIv~SdgLd~~~i~~l~~~g~~id~FGIGT~L~t~~~ 316 (327)
T cd01570 260 LAYLSKEARKMLDEAGLTKVKIVASNDLDEYTIAALNAQGAPIDAFGVGTRLVTSQS 316 (327)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf 799999999999877999978999799999999999977997349967876123999
No 447
>KOG4202 consensus
Probab=54.40 E-value=17 Score=17.05 Aligned_cols=124 Identities=17% Similarity=0.194 Sum_probs=73.5
Q ss_pred CEEEEEEEEEECCHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCC--HHHHHHHHHHCCEEEEE
Q ss_conf 41685678851203367640-4776079997066421589998677649825998523334--47899886201402899
Q gi|254780975|r 63 SVFDCHLMISSIDSHINIIA-DAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETP--VAILEDVIDEIDMILIM 139 (224)
Q Consensus 63 ~~~dvHLMv~~P~~~i~~~~-~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~--~~~i~~~l~~~D~vliM 139 (224)
.+.=|-..+++|+++|-..+ ..+.|++-.|-... .+++...+ ++-+.+-|-.. ........+..|++++=
T Consensus 92 ~~~lVGVF~nqp~e~il~~~~~~~ldiVQLHG~es------~~~~~~L~-rpvikvfpln~n~~~~~~~~vP~~d~~lvd 164 (227)
T KOG4202 92 AKKLVGVFVNQPEETILRAADSSDLDIVQLHGNES------RAAFSRLV-RPVIKVFPLNANEDGKLLNEVPEEDWILVD 164 (227)
T ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCC------HHHHHHHC-CCEEEEEECCCHHHHHHHCCCCCHHHEEEC
T ss_conf 40068875259889999987644975598628653------89999747-844899724713767764028700202464
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH-CCCCEEEECHHH
Q ss_conf 8306776533220135778998654313865269815899889999996-799899974266
Q gi|254780975|r 140 TVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQ-AGADLLVVGSSF 200 (224)
Q Consensus 140 ~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~-~Gad~~V~Gsai 200 (224)
+ +.|-+|..|.=..++-+- -+.+.+ -...||++.+|...... .+++.+=+.|.+
T Consensus 165 s-etGG~G~~~dW~~~s~~~----vr~~~~--~~LAGGltP~NV~dAlsi~~p~gvDVSsGv 219 (227)
T KOG4202 165 S-ETGGSGKGFDWAQFSLPS----VRSRNG--WLLAGGLTPTNVSDALSILQPDGVDVSSGV 219 (227)
T ss_pred C-CCCCCCCCCCHHHHCCCC----CCCCCC--EEEECCCCCCCHHHHHHHCCCCEEECCCCE
T ss_conf 5-567676663787823764----335676--487458885436776643387437424750
No 448
>TIGR00875 talC transaldolase, putative; InterPro: IPR004731 Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate. Transaldolase is evolutionary related to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0005975 carbohydrate metabolic process.
Probab=54.37 E-value=17 Score=17.05 Aligned_cols=176 Identities=15% Similarity=0.247 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC----C----HHHHHHHHHCC--CCEEEEEEEEEECCHHHH---HH
Q ss_conf 88999999999996599899997342634584341----7----89999864125--641685678851203367---64
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF----G----ADVIRSLRSYS--DSVFDCHLMISSIDSHIN---II 81 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~----~----~~~i~~i~~~t--~~~~dvHLMv~~P~~~i~---~~ 81 (224)
|-.|. +|++++.+.| +.||.=. |-|+ + .+.+++|.+.- +=++-...|+.+-+..++ .+
T Consensus 6 DTANv-~Ei~~~~e~g-------~~~GVTT-NPsliak~~n~~f~evl~ei~~~vGd~G~vsae~~S~dAegMv~Eak~L 76 (216)
T TIGR00875 6 DTANV-EEIKKAAELG-------ILAGVTT-NPSLIAKEGNRSFWEVLKEIQEVVGDEGPVSAEVISLDAEGMVEEAKEL 76 (216)
T ss_pred CCCCH-HHHHHHHHCC-------CCCCCCC-CHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHH
T ss_conf 41257-9999998424-------5477345-6334201368878899999998745888553434304178899999999
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEE--EEECCCCH-------HHHHHHHHHCCEEEEEEEECCCCCCCCCC
Q ss_conf 0477607999706642158999867764982599--85233344-------78998862014028998306776533220
Q gi|254780975|r 82 ADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGV--AINPETPV-------AILEDVIDEIDMILIMTVNPGFGGQQLIE 152 (224)
Q Consensus 82 ~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Gi--ai~p~T~~-------~~i~~~l~~~D~vliM~V~PG~~Gq~f~~ 152 (224)
.+. ++-|++-.-.|.+=...++.+++.|+++-. .++|.+-+ +-+.||+.-+|-+ |..
T Consensus 77 a~~-~~nivvKIP~T~~GLkAv~~L~~eGI~TnvTlvfsa~QaLlAA~AGA~YVsPfvgRlDdi-------gg~------ 142 (216)
T TIGR00875 77 AKL-APNIVVKIPMTSEGLKAVKILKKEGIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDDI-------GGD------ 142 (216)
T ss_pred HHH-CCCCEEEECCCHHHHHHHHHHHHCCCCEEEHHEECHHHHHHHHHCCCCEECCHHHHHHHC-------CCC------
T ss_conf 975-289789614785379999999857983120102354589999981891424401101312-------775------
Q ss_pred HHHHHHHHHHHHHHCCCCE--EEEECCCCHHHHHHHHHCCCCEEEECHH----HHCCCCHHHHHHHHH
Q ss_conf 1357789986543138652--6981589988999999679989997426----637899899999999
Q gi|254780975|r 153 STIPKIRQAKALIGKRSIS--LEVDGGVTSRNIKSLVQAGADLLVVGSS----FFNQKGEISYAKRLN 214 (224)
Q Consensus 153 ~~l~kI~~l~~~~~~~~~~--I~vDGGvn~~~i~~l~~~Gad~~V~Gsa----if~~~d~~~~~~~l~ 214 (224)
-++.|.++++++..+.++ |-+--==...++-++...|+|..-+--. +|+.|--....+++.
T Consensus 143 -G~~li~e~~~i~~~h~~~t~vi~AS~rhP~hvle~al~Ga~~~t~p~~V~~~l~~~P~~~~~lE~F~ 209 (216)
T TIGR00875 143 -GLKLIEEVKTIFENHALDTEVIAASVRHPRHVLEAALIGADIATLPLDVMQQLLNHPLTDIGLERFL 209 (216)
T ss_pred -HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCEEECCHHHHHHHHHCCHHHHHHHHHH
T ss_conf -0578999999997308764266540237178999997065544057899999850753578888777
No 449
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=54.33 E-value=17 Score=17.05 Aligned_cols=83 Identities=25% Similarity=0.282 Sum_probs=45.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHH-HHHHC--CEEEEEEEEC-CCCCCCCCCHHHHHHH
Q ss_conf 776079997066421589998677649825998523334478998-86201--4028998306-7765332201357789
Q gi|254780975|r 84 AGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILED-VIDEI--DMILIMTVNP-GFGGQQLIESTIPKIR 159 (224)
Q Consensus 84 ~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~-~l~~~--D~vliM~V~P-G~~Gq~f~~~~l~kI~ 159 (224)
.|+|.|.||.+.- -..++..++....-.|. .+.-.+ +=... ....=++++| -|..+...+.+..+++
T Consensus 202 l~~dligFqt~~y--~~nF~~~~~r~~~~~~~-------~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~ 272 (486)
T COG0380 202 LGADLIGFQTESY--ARNFLDLCSRLLGVTGD-------ADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVL 272 (486)
T ss_pred HCCCEEEECCHHH--HHHHHHHHHHHCCCCCC-------CCCCCCCCCCCEEEEEEEEEECCHHHHHHHHCCCCHHHHHH
T ss_conf 3278668537789--99999999986365544-------43202466786578989940148899987616873156799
Q ss_pred HHHHHHHC-CCCEEEEE
Q ss_conf 98654313-86526981
Q gi|254780975|r 160 QAKALIGK-RSISLEVD 175 (224)
Q Consensus 160 ~l~~~~~~-~~~~I~vD 175 (224)
++++.+.+ +.+-+.+|
T Consensus 273 el~~~~~~~~kiivgvD 289 (486)
T COG0380 273 ELKAELGRNKKLIVGVD 289 (486)
T ss_pred HHHHHHCCCCEEEEEEH
T ss_conf 99998468866999740
No 450
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=53.81 E-value=18 Score=16.99 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHCCCCEEEEEEE---CCEEC
Q ss_conf 9999999999659989999734---26345
Q gi|254780975|r 18 RLGEEISNITKAGAKQIHFDVM---DGCFV 44 (224)
Q Consensus 18 ~l~~~i~~l~~~~~d~iHiDIm---Dg~fv 44 (224)
|=-...+...+.|+|++-+||. ||+.|
T Consensus 23 NTl~Af~~A~~~G~d~iE~DV~lTkDg~~V 52 (249)
T PRK09454 23 NTLAAIDVGARYGHKMIEFDAKLSADGVIF 52 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEECCCCCEE
T ss_conf 049999999984999999985696899999
No 451
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=53.75 E-value=18 Score=16.99 Aligned_cols=115 Identities=15% Similarity=0.241 Sum_probs=61.8
Q ss_pred HCCCCCCEEEEECCCC---------CC---HHHHHHHHHHCCCEEEEE--EECCCCHHHHHHHHHH-CCEEEEEEEECCC
Q ss_conf 4047760799970664---------21---589998677649825998--5233344789988620-1402899830677
Q gi|254780975|r 81 IADAGCDIITFHPESS---------PH---IRRSLRTIHAMGKKTGVA--INPETPVAILEDVIDE-IDMILIMTVNPGF 145 (224)
Q Consensus 81 ~~~~g~d~i~~H~E~~---------~~---~~~~i~~i~~~g~k~Gia--i~p~T~~~~i~~~l~~-~D~vliM~V~PG~ 145 (224)
+...++|-+.+|.... .+ ..+.|+++++.-.-+-|+ ...+-+.+....+.+. +++|-+ -|.
T Consensus 144 v~~i~AdAl~iHlN~~QEl~qpEGDr~f~~~l~~I~~i~~~~~vPVIvKeVG~Gis~e~a~~l~~~Gv~~IdV----sg~ 219 (351)
T PRK05437 144 VEMIEADALQIHLNPLQELVQPEGDRDFRGWLDRIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDV----AGA 219 (351)
T ss_pred HHHHCCCCEEEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE----CCC
T ss_conf 9971678157524624540288889778899999999998679988985215788999999999679999995----799
Q ss_pred CCCCCC--------------------CHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHH
Q ss_conf 653322--------------------01357789986543138652698158998-899999967998999742663
Q gi|254780975|r 146 GGQQLI--------------------ESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFF 201 (224)
Q Consensus 146 ~Gq~f~--------------------~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif 201 (224)
+|-.|. -.+.+-+.++++..+ ++.|.+||||+. -.+.+....||+.+=+|..+.
T Consensus 220 GGTnf~~IE~~R~~~~~~~~~~~~wGipT~~sL~e~~~~~~--~~~iiasGGIR~glDi~KaLaLGA~~vgia~p~L 294 (351)
T PRK05437 220 GGTSWAAVENYRAKQRRLASYFADWGIPTAQSLLEARSALP--DLPIIASGGIRTGLDIAKALALGADAVGLAGPFL 294 (351)
T ss_pred CCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 88557999988710212457777348668999999997479--9829962787878999999995510777589999
No 452
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases; InterPro: IPR010031 This entry identifies a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesising ascorbic acid or a derivative. These include L-gulonolactone oxidase (1.1.3.8 from EC) from rat and D-arabinono-1,4-lactone oxidase (1.1.3.37 from EC) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by IPR006093 from INTERPRO.; GO: 0016899 oxidoreductase activity acting on the CH-OH group of donors oxygen as acceptor, 0009058 biosynthetic process.
Probab=53.68 E-value=15 Score=17.40 Aligned_cols=103 Identities=15% Similarity=0.319 Sum_probs=71.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHH---HHHH---HHCCEEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 799970664215899986776498259985233344789---9886---2014028998306776533220135778998
Q gi|254780975|r 88 IITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAIL---EDVI---DEIDMILIMTVNPGFGGQQLIESTIPKIRQA 161 (224)
Q Consensus 88 ~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i---~~~l---~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l 161 (224)
...++..+.+++.+++..+|++++++-++ ..+-+.+.+ ..|+ +..|.|+-.--+|-..-...--++==+.-++
T Consensus 16 e~y~qP~s~eevrE~l~~Ar~~~Kk~~vV-G~GHSPSdi~cTdg~l~~ldkmnkV~~fd~~Pelh~~~iTV~AGirlyql 94 (505)
T TIGR01678 16 EVYYQPKSVEEVREVLADAREAEKKVKVV-GAGHSPSDIVCTDGFLVSLDKMNKVLKFDKEPELHKKDITVEAGIRLYQL 94 (505)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEE-CCCCCCCCCEECCCHHEECCCCCCEEEECCCCCCCCCCEEHHHHHHHHHH
T ss_conf 55448972999999999987469838997-57778232154260210012245101552786632201116552568664
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHCCC
Q ss_conf 654313865269815899889999996799
Q gi|254780975|r 162 KALIGKRSISLEVDGGVTSRNIKSLVQAGA 191 (224)
Q Consensus 162 ~~~~~~~~~~I~vDGGvn~~~i~~l~~~Ga 191 (224)
.+.+.++++.++.=|+|++.++.-+...|.
T Consensus 95 ~e~L~~~Gys~~~lGsiSe~sVaGiistgt 124 (505)
T TIGR01678 95 QEILDEKGYSLSNLGSISEVSVAGIISTGT 124 (505)
T ss_pred HHHHHHCCCCEECCCCCCCCEECCEEECCC
T ss_conf 589752487100022100431211550374
No 453
>pfam00724 Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family.
Probab=53.38 E-value=18 Score=16.95 Aligned_cols=127 Identities=16% Similarity=0.261 Sum_probs=72.0
Q ss_pred HCCCCCCEEEEECCCC--------------------------CCHHHHHHHHHHC-C--CEEEEEEECCCC-------HH
Q ss_conf 4047760799970664--------------------------2158999867764-9--825998523334-------47
Q gi|254780975|r 81 IADAGCDIITFHPESS--------------------------PHIRRSLRTIHAM-G--KKTGVAINPETP-------VA 124 (224)
Q Consensus 81 ~~~~g~d~i~~H~E~~--------------------------~~~~~~i~~i~~~-g--~k~Giai~p~T~-------~~ 124 (224)
..++|.|-|-+|.-+. .-+.+++..||+. | .-+|+=|++... .+
T Consensus 152 A~~AGfDGVEIh~ahGyLl~QFLSp~~N~RtDeYGGslENR~Rf~~eIi~aIR~~vg~d~~i~vRis~~d~~~~g~~~~e 231 (336)
T pfam00724 152 AVEAGFDGVEIHGAHGYLLDQFLSPGSNKRTDEYGGSIENRARFPLEVVDAVKEAVGEDRPIGYRLSPDDVFEGGLTGAE 231 (336)
T ss_pred HHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHH
T ss_conf 99829998996142678999862876588977678898897548999999999972877664267465224689988426
Q ss_pred HH---HHHHHH--CCEEEEEEE------ECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCC-C
Q ss_conf 89---988620--140289983------06776533220135778998654313865269815899-88999999679-9
Q gi|254780975|r 125 IL---EDVIDE--IDMILIMTV------NPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAG-A 191 (224)
Q Consensus 125 ~i---~~~l~~--~D~vliM~V------~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~G-a 191 (224)
.+ .+++.. +|++.+-.. .|...+ ++.....-.....+......++.+.+-||++ .+.+.++++.| +
T Consensus 232 ~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~~pvi~~G~i~~~~~ae~~l~~g~~ 310 (336)
T pfam00724 232 TLAQFAYAAGELGVRVLDGTRLAYIHAIEPRVTG-PFPVETGQQVENNEFIKKVWKGPVITVGRINDPEFAAEIVEEGRA 310 (336)
T ss_pred HHHHHHHHHHHHCCCEEECCCCCEEECCCCCCCC-CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 8999999999838775642766223202443357-877563124789999998769859996999989999999987994
Q ss_pred CEEEECHHHHCCCCHHH
Q ss_conf 89997426637899899
Q gi|254780975|r 192 DLLVVGSSFFNQKGEIS 208 (224)
Q Consensus 192 d~~V~Gsaif~~~d~~~ 208 (224)
|.+-.|.++..+||...
T Consensus 311 D~V~~gR~~iadPd~~~ 327 (336)
T pfam00724 311 DLVAMGRPFLADPDLVK 327 (336)
T ss_pred EEHHHHHHHHHCHHHHH
T ss_conf 43686699997913999
No 454
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=53.31 E-value=18 Score=16.94 Aligned_cols=109 Identities=11% Similarity=0.035 Sum_probs=52.1
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECC-----HHHHHHCC
Q ss_conf 7063258899999999999659989999734263458434178999986412564168567885120-----33676404
Q gi|254780975|r 9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSID-----SHINIIAD 83 (224)
Q Consensus 9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~-----~~i~~~~~ 83 (224)
|-=-.....+|.+.+++|...+-+|+-+----|--...- ..++++.|++.+.++.=.||-+-+-. ..++.+..
T Consensus 31 PPk~~~~~~~l~~~i~~L~~l~P~FvSVTyGAggstr~~--T~~i~~~i~~~~~i~~~~HLTCvg~t~~~i~~~L~~~~~ 108 (296)
T PRK09432 31 PPRTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSGERDR--THSIIKGIKKRTGLEAAPHLTCIDATPEELRTIAKDYWN 108 (296)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHH--HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 988906899999999998516999899607989977356--999999999874998112666269999999999999997
Q ss_pred CCCCEEEEEC----C----CCCCHHHHHHHHHHCC-CEEEEEEEC
Q ss_conf 7760799970----6----6421589998677649-825998523
Q gi|254780975|r 84 AGCDIITFHP----E----SSPHIRRSLRTIHAMG-KKTGVAINP 119 (224)
Q Consensus 84 ~g~d~i~~H~----E----~~~~~~~~i~~i~~~g-~k~Giai~p 119 (224)
.|++.|.--- + ...+-.+.+.+||+.+ ..+|+|=-|
T Consensus 109 ~GI~nILALRGD~P~g~~~~~~yA~dLV~~Ir~~~~f~I~VAaYP 153 (296)
T PRK09432 109 NGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAYP 153 (296)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCC
T ss_conf 597548654898999999887468999999998369826874288
No 455
>pfam07287 DUF1446 Protein of unknown function (DUF1446). This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=52.51 E-value=18 Score=16.86 Aligned_cols=99 Identities=18% Similarity=0.317 Sum_probs=46.0
Q ss_pred HHHHHHHHHHCCCEEEE---EEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHH------HHHCCC
Q ss_conf 58999867764982599---852333447899886201402899830677653322013577899865------431386
Q gi|254780975|r 99 IRRSLRTIHAMGKKTGV---AINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKA------LIGKRS 169 (224)
Q Consensus 99 ~~~~i~~i~~~g~k~Gi---ai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~------~~~~~~ 169 (224)
+...+..++++|+|+-. ++||.---+.+..++.....=+-..+--| . .++++++++.+ +.....
T Consensus 60 l~~~L~~~~~kgikii~NaGa~NP~~~a~~v~~~a~~~Gl~lkVA~V~G---D----Dv~~~~~~~~~g~~~~~l~~g~~ 132 (362)
T pfam07287 60 LEPVLPLCAEKGIRIVTNAGALNPRGAAEAVRELARELGLDLKVAVVEG---D----DVLPRVDELLKGEDLTHLDTGEP 132 (362)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC---C----CCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9999999997293899528878979999999999997799953999978---7----53145677642788654557997
Q ss_pred C------EEEEECCCCHHHHHHHHHCCCCEEEECH----HHHCCC
Q ss_conf 5------2698158998899999967998999742----663789
Q gi|254780975|r 170 I------SLEVDGGVTSRNIKSLVQAGADLLVVGS----SFFNQK 204 (224)
Q Consensus 170 ~------~I~vDGGvn~~~i~~l~~~Gad~~V~Gs----aif~~~ 204 (224)
+ .+..-==+-..-|.+..+.|||+++.|. ++|=.+
T Consensus 133 l~~~~~~~~sanAYLGa~~I~~AL~~GADIVItGRvaD~al~lgp 177 (362)
T pfam07287 133 LPELGDRLVSANAYLGAEGIVEALRAGADIVITGRVADASLVLGP 177 (362)
T ss_pred CCCCCCCEEEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHH
T ss_conf 644566436777623858999999719988985551456887889
No 456
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=52.40 E-value=19 Score=16.85 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=27.0
Q ss_pred HHHHHHCCCCE---EEEEC-CCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 86543138652---69815-89988999999679989997426637
Q gi|254780975|r 161 AKALIGKRSIS---LEVDG-GVTSRNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 161 l~~~~~~~~~~---I~vDG-Gvn~~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
++++..+++++ +.++| .+...-...+.+.|+|.+|+||+-.+
T Consensus 70 ~~~~C~~~~V~~e~~v~e~~d~~~~I~e~v~~~~i~~LVmGs~~~~ 115 (146)
T cd01989 70 YRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDN 115 (146)
T ss_pred HHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 9999987597289999834888899999999759989998627998
No 457
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=52.30 E-value=19 Score=16.84 Aligned_cols=199 Identities=15% Similarity=0.182 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEE--ECCEECCCC---CCCHHHHHHHHHCCCCE--EEEEEEEEECCH---HHHHHCCC
Q ss_conf 889999999999965998999973--426345843---41789999864125641--685678851203---36764047
Q gi|254780975|r 15 DFSRLGEEISNITKAGAKQIHFDV--MDGCFVPNI---SFGADVIRSLRSYSDSV--FDCHLMISSIDS---HINIIADA 84 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~~d~iHiDI--mDg~fvpn~---~~~~~~i~~i~~~t~~~--~dvHLMv~~P~~---~i~~~~~~ 84 (224)
+..++.+...++-.+|+|++-=|= .|.-|.|-- .+..+.++.-...|... .-+++ +.+++. -.+...+.
T Consensus 158 s~~~~a~~~ye~~~GG~D~iKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni-T~~~~em~~ra~~a~e~ 236 (412)
T TIGR03326 158 STEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLANI-TAPVREMERRAELVADL 236 (412)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC-CCCHHHHHHHHHHHHHC
T ss_conf 97999999999982577731266456798876589999999999999998758742588643-78999999999999983
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEE------------ECCCCHH--HHHHHHHH--CCEEEEEEEECCCCCC
Q ss_conf 760799970664215899986776498259985------------2333447--89988620--1402899830677653
Q gi|254780975|r 85 GCDIITFHPESSPHIRRSLRTIHAMGKKTGVAI------------NPETPVA--ILEDVIDE--IDMILIMTVNPGFGGQ 148 (224)
Q Consensus 85 g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai------------~p~T~~~--~i~~~l~~--~D~vliM~V~PG~~Gq 148 (224)
|+.++-+-+-+.. -..++.+++.--..|+.| +|..-++ .+-++.-. +|.+.+=++ |++--
T Consensus 237 G~~~vMv~~~~~G--~sal~~lr~~~~d~~l~ihaHrA~~ga~~r~p~~Gis~~vl~Kl~RLaGaD~ih~~t~--~~Gk~ 312 (412)
T TIGR03326 237 GGQYVMVDVVVCG--WSALQYIRELTEDLGLAIHAHRAMHAAFTRNPKHGISMFALAKLYRLIGVDQLHTGTA--GVGKL 312 (412)
T ss_pred CCCEEEECCCCCC--CHHHHHHHHHHHHCCCEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCEEECCCC--CCCCC
T ss_conf 9987974363246--3599999986223497798436640444438767736999999999839882422787--77886
Q ss_pred CCCCHHHHHHH-HHHHHHHC-CCCEEEEECCCCHHHHHHHH-HCCCCEEE-ECHHHHCCCCHHH-HHHHHHHHHH
Q ss_conf 32201357789-98654313-86526981589988999999-67998999-7426637899899-9999999999
Q gi|254780975|r 149 QLIESTIPKIR-QAKALIGK-RSISLEVDGGVTSRNIKSLV-QAGADLLV-VGSSFFNQKGEIS-YAKRLNDLKK 218 (224)
Q Consensus 149 ~f~~~~l~kI~-~l~~~~~~-~~~~I~vDGGvn~~~i~~l~-~~Gad~~V-~Gsaif~~~d~~~-~~~~l~~l~~ 218 (224)
.+.++....+. .+++-... +..--..-||++..+++.+. ..|-|++. .|+.+++.|+... -++.++.-..
T Consensus 313 ~~~~~~~~~~~~~l~~~~~~~k~~~PV~SgGih~g~~p~~~~~~G~D~il~~GGGi~GHP~G~aaGa~A~RqA~e 387 (412)
T TIGR03326 313 EGGKEDTKQINDFLRQKWHHIKPVFPVSSGGLHPGLVPPLIDALGKDLVIQAGGGVHGHPDGPRAGAKALRAAID 387 (412)
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 789899999999861743478982577178776536779999739818996797664799864788999999999
No 458
>KOG0369 consensus
Probab=52.12 E-value=19 Score=16.82 Aligned_cols=145 Identities=21% Similarity=0.218 Sum_probs=79.5
Q ss_pred HHHHHHHHH-CCCCEEEEEE-------EEEECCHHHHHH----CCCCCCEEEEECCCCCCHHHHH---HHHHHCCCEEEE
Q ss_conf 899998641-2564168567-------885120336764----0477607999706642158999---867764982599
Q gi|254780975|r 51 ADVIRSLRS-YSDSVFDCHL-------MISSIDSHINII----ADAGCDIITFHPESSPHIRRSL---RTIHAMGKKTGV 115 (224)
Q Consensus 51 ~~~i~~i~~-~t~~~~dvHL-------Mv~~P~~~i~~~----~~~g~d~i~~H~E~~~~~~~~i---~~i~~~g~k~Gi 115 (224)
++.++.+|+ ++++|+..-| .+..|.+.+.+| .+.|.|+.-+ ..+.+++.+.+ +...+.|--+--
T Consensus 621 WeRL~~lRkliPNIPFQmLLRGANavgYssyPDNviykFce~Ak~nGmDiFRV-FDsLN~lpnl~lGmeAagkAGGVVEA 699 (1176)
T KOG0369 621 WERLRELRKLIPNIPFQMLLRGANAVGYSSYPDNVIYKFCEQAKKNGMDIFRV-FDSLNYLPNLLLGMEAAGKAGGVVEA 699 (1176)
T ss_pred HHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE-HHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 89999999767898589975135513326787168999999998548615661-01331024545556654115875899
Q ss_pred E-------EECCCCHHHHHHHHHHCCEEEEEEEE-CC---CCCCCCCCHHHHHHHHHHHHHHCCCCEEEE-E-CCCCHHH
Q ss_conf 8-------52333447899886201402899830-67---765332201357789986543138652698-1-5899889
Q gi|254780975|r 116 A-------INPETPVAILEDVIDEIDMILIMTVN-PG---FGGQQLIESTIPKIRQAKALIGKRSISLEV-D-GGVTSRN 182 (224)
Q Consensus 116 a-------i~p~T~~~~i~~~l~~~D~vliM~V~-PG---~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~v-D-GGvn~~~ 182 (224)
+ ++|...--.+.+|++.+|.+.-|+.. -| -.|----+.+--.|..+|..++.-.+.+.. | -|---.-
T Consensus 700 ai~YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~PdlPiHvHtHDtsGagVAs 779 (1176)
T KOG0369 700 AICYTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPDLPIHVHTHDTSGAGVAS 779 (1176)
T ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHH
T ss_conf 88502555786544114799998999998626718865444233676888999998874089985377416776387999
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 99999679989997
Q gi|254780975|r 183 IKSLVQAGADLLVV 196 (224)
Q Consensus 183 i~~l~~~Gad~~V~ 196 (224)
...|..+|||++=+
T Consensus 780 Mlaca~AGADVVDv 793 (1176)
T KOG0369 780 MLACALAGADVVDV 793 (1176)
T ss_pred HHHHHHCCCCEEEE
T ss_conf 99998739960443
No 459
>PRK06851 hypothetical protein; Provisional
Probab=51.76 E-value=19 Score=16.79 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=42.9
Q ss_pred EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE-ECCCCHHHH
Q ss_conf 259985233344789988620140289983067765332201357789986543138652698-158998899
Q gi|254780975|r 112 KTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEV-DGGVTSRNI 183 (224)
Q Consensus 112 k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~v-DGGvn~~~i 183 (224)
++.=|+.|.=+++.+..++..++.+-++.-.||.+- ...+.+|.+... ++++.++| -=|.+.+.+
T Consensus 193 lF~~A~TP~G~v~~i~~l~~~~~~~y~ikG~pGtGK----stlL~~i~~~A~---~~G~dvevyhc~fdPd~i 258 (368)
T PRK06851 193 LFLGAITPKGAVDHVPSLTEGVKNRYFLKGRPGTGK----STMLKKVAKAAE---ERGLDVEVYHCPFDPNSL 258 (368)
T ss_pred EECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH----HHHHHHHHHHHH---HCCCEEEEEECCCCCCCC
T ss_conf 322357999645147878606786999818999877----999999999999---859828998079898861
No 460
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=51.10 E-value=19 Score=16.72 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=21.0
Q ss_pred EEEEECCCCH-HHHHHHHHCCCCEEEE
Q ss_conf 2698158998-8999999679989997
Q gi|254780975|r 171 SLEVDGGVTS-RNIKSLVQAGADLLVV 196 (224)
Q Consensus 171 ~I~vDGGvn~-~~i~~l~~~Gad~~V~ 196 (224)
+..||||+.. --+..+.+.|+|.+|+
T Consensus 146 ~~yvDGG~~~n~Pv~~a~~~Gad~ii~ 172 (175)
T cd07228 146 RLLVDGGVVNPIPVSVARALGADIVIA 172 (175)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCEEEE
T ss_conf 899878867761099999779598999
No 461
>PRK12928 lipoyl synthase; Provisional
Probab=51.09 E-value=19 Score=16.72 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=78.5
Q ss_pred EEECCHHHHHHCCCCCCEEEEECCCCCC--------HHHHHHHHHHCCCEEEE-EEECCCC--HH-HHHHHHHH-CCEE-
Q ss_conf 8512033676404776079997066421--------58999867764982599-8523334--47-89988620-1402-
Q gi|254780975|r 71 ISSIDSHINIIADAGCDIITFHPESSPH--------IRRSLRTIHAMGKKTGV-AINPETP--VA-ILEDVIDE-IDMI- 136 (224)
Q Consensus 71 v~~P~~~i~~~~~~g~d~i~~H~E~~~~--------~~~~i~~i~~~g~k~Gi-ai~p~T~--~~-~i~~~l~~-~D~v- 136 (224)
-.+|.+..+.....|-+++.+-.-.-+| ..++++.||+..-.+.+ +|-|+-. .+ .+..+++. .|.+
T Consensus 89 ~~EP~rvA~av~~m~LkyvVITSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~iEvLiPDF~G~~~~al~~v~~a~pdV~n 168 (290)
T PRK12928 89 PDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGVARALATVLAAKPDCFN 168 (290)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHCCCHHHH
T ss_conf 03479999999983897689841236788664529999999999845998679970711136878999999846854654
Q ss_pred -EEE-------EEECCCCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCH----HHHHHHHHCCCCEEEECHHHHC
Q ss_conf -899-------83067765332201357789986543138--652698158998----8999999679989997426637
Q gi|254780975|r 137 -LIM-------TVNPGFGGQQLIESTIPKIRQAKALIGKR--SISLEVDGGVTS----RNIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 137 -liM-------~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~--~~~I~vDGGvn~----~~i~~l~~~Gad~~V~Gsaif~ 202 (224)
.+= .|.||.. -..+|+-++.++++.+.- +-.|++-=|=+. +++..|.++|+|++..|-++=-
T Consensus 169 HNiETV~rL~~~VRp~A~----Y~rSL~vL~~ak~~~~~i~TKSgiMvGLGEt~eEv~~~~~DLr~~gvdilTiGQYL~P 244 (290)
T PRK12928 169 HNLETVPRLQKAVRRGAD----YQRSLDLLARAKELAPGIPTKSGLMLGLGETEDEVIETLRDLRAVDCDRLTIGQYLRP 244 (290)
T ss_pred CCCCCCHHHCCCCCCCCH----HHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 550120431712488550----8999999999997388852413458860588999999999999819989982402588
Q ss_pred CC
Q ss_conf 89
Q gi|254780975|r 203 QK 204 (224)
Q Consensus 203 ~~ 204 (224)
++
T Consensus 245 s~ 246 (290)
T PRK12928 245 SL 246 (290)
T ss_pred CC
T ss_conf 86
No 462
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=51.08 E-value=12 Score=17.98 Aligned_cols=137 Identities=21% Similarity=0.355 Sum_probs=71.6
Q ss_pred HHHCCCHHHHHHHHHHHHHCC-CCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCC-
Q ss_conf 063258899999999999659-989999734263458434178999986412564168567885120336764047760-
Q gi|254780975|r 10 SILAADFSRLGEEISNITKAG-AKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCD- 87 (224)
Q Consensus 10 Sil~~d~~~l~~~i~~l~~~~-~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d- 87 (224)
.+|-.+.++++.-++.+.+.| .-|+|+|..+|-= |--++.+++++. . ++|
T Consensus 28 flL~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl~--~~e~~i~fi~~~------------------------~--~pdG 79 (181)
T COG1954 28 FLLTGHILNIKEIVKKLKNRGKTVFIHVDLVEGLS--NDEVAIEFIKEV------------------------I--KPDG 79 (181)
T ss_pred EEEECHHHHHHHHHHHHHHCCCEEEEEEHHHCCCC--CCHHHHHHHHHH------------------------C--CCCE
T ss_conf 99824063099999999947967999857844667--853899999985------------------------0--6771
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCEEEEE--EECCCCHHHHHHHHH--HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 79997066421589998677649825998--523334478998862--01402899830677653322013577899865
Q gi|254780975|r 88 IITFHPESSPHIRRSLRTIHAMGKKTGVA--INPETPVAILEDVID--EIDMILIMTVNPGFGGQQLIESTIPKIRQAKA 163 (224)
Q Consensus 88 ~i~~H~E~~~~~~~~i~~i~~~g~k~Gia--i~p~T~~~~i~~~l~--~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~ 163 (224)
+|+.+ .+.+...+++|..+--- +--...++.-...+. ..|.|=+| ||. .|..+.+|.
T Consensus 80 IISTk-------~~~i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvL---PGv-----~Pkvi~~i~---- 140 (181)
T COG1954 80 IISTK-------SNVIKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFIEVL---PGV-----MPKVIKEIT---- 140 (181)
T ss_pred EEECC-------HHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHCCCCEEEEC---CCC-----CHHHHHHHH----
T ss_conf 68734-------88999999749732642200107889989999987099879886---754-----399999998----
Q ss_pred HHHCCCCEEEEECCC-C-HHHHHHHHHCCCCEEEE
Q ss_conf 431386526981589-9-88999999679989997
Q gi|254780975|r 164 LIGKRSISLEVDGGV-T-SRNIKSLVQAGADLLVV 196 (224)
Q Consensus 164 ~~~~~~~~I~vDGGv-n-~~~i~~l~~~Gad~~V~ 196 (224)
.+.+++| +-||. + .|-.....++||-.+-.
T Consensus 141 --~~t~~pi-IAGGLi~t~Eev~~Al~aGA~avST 172 (181)
T COG1954 141 --EKTHIPI-IAGGLIETEEEVREALKAGAVAVST 172 (181)
T ss_pred --HHCCCCE-EECCCCCCHHHHHHHHHHCCEEEEE
T ss_conf --7558977-7324305399999999717679851
No 463
>KOG3974 consensus
Probab=50.60 E-value=20 Score=16.67 Aligned_cols=83 Identities=17% Similarity=0.369 Sum_probs=48.5
Q ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHH
Q ss_conf 40477607999706642158999867764982599852333----44789988620140289983067765332201357
Q gi|254780975|r 81 IADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPET----PVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIP 156 (224)
Q Consensus 81 ~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T----~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~ 156 (224)
-...|+|...+-+|... ..-||.+ .+-+-.+|.- +++.++++++.+ ...-|-||-+- .|.++.
T Consensus 53 a~~~GaDL~HiFCe~~A-----a~vIKsY--sPdLIVHP~l~~~~av~~i~k~L~Rl---havVIGPGLGR---dp~~~k 119 (306)
T KOG3974 53 ALRVGADLSHIFCEPEA-----AVVIKSY--SPDLIVHPVLDQENAVDIIEKLLQRL---HAVVIGPGLGR---DPAILK 119 (306)
T ss_pred HHHHCCCEEEEEECHHH-----HHHHHHC--CCCEEECCCCCCCCHHHHHHHHHHHE---EEEEECCCCCC---CHHHHH
T ss_conf 98856651235545207-----7787642--97506413425776376789877435---38997798889---878999
Q ss_pred HHHHHHHHHHCCCCEEEEEC
Q ss_conf 78998654313865269815
Q gi|254780975|r 157 KIRQAKALIGKRSISLEVDG 176 (224)
Q Consensus 157 kI~~l~~~~~~~~~~I~vDG 176 (224)
-+.++-++..++++.+-+||
T Consensus 120 ~i~~iley~~~~dvP~VIDa 139 (306)
T KOG3974 120 EIAKILEYLRGKDVPLVIDA 139 (306)
T ss_pred HHHHHHHHHHCCCCCEEECC
T ss_conf 99999999864898679807
No 464
>TIGR02146 LysS_fung_arch homocitrate synthase; InterPro: IPR011872 This entry includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus . This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs .; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=50.49 E-value=20 Score=16.66 Aligned_cols=161 Identities=15% Similarity=0.211 Sum_probs=103.9
Q ss_pred HHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCE----EEEEEEEEE--CCHHHHHHCCCCCCEEEEECCC-
Q ss_conf 999996599899997342634584341789999864125641----685678851--2033676404776079997066-
Q gi|254780975|r 23 ISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSV----FDCHLMISS--IDSHINIIADAGCDIITFHPES- 95 (224)
Q Consensus 23 i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~----~dvHLMv~~--P~~~i~~~~~~g~d~i~~H~E~- 95 (224)
-+.|++-|++||-+ -.-.-+++.-+.++.+..+. +..-+.+=- -.+-++-.++.++|+|-+-+-.
T Consensus 26 AkALdd~GV~~IE~--------g~P~vS~d~~~~ik~i~~L~~~G~l~a~iv~Hsra~~~D~~~a~~~~Vd~i~~~~G~S 97 (355)
T TIGR02146 26 AKALDDIGVDYIEV--------GHPAVSPDIRKDIKLIASLGKEGLLKAKIVTHSRAVLDDIEVAVETEVDRIDVFFGVS 97 (355)
T ss_pred HHHHHHHCCEEEEC--------CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECH
T ss_conf 87632318105724--------8875547789999999833888760035567789999998776422786578743005
Q ss_pred ---------------CCCHHHHHHHHHHCCCEEEEEEEC-CCCHHHHHHHHHH--------CCEEEEEEEECCCCCCCCC
Q ss_conf ---------------421589998677649825998523-3344789988620--------1402899830677653322
Q gi|254780975|r 96 ---------------SPHIRRSLRTIHAMGKKTGVAINP-ETPVAILEDVIDE--------IDMILIMTVNPGFGGQQLI 151 (224)
Q Consensus 96 ---------------~~~~~~~i~~i~~~g~k~Giai~p-~T~~~~i~~~l~~--------~D~vliM~V~PG~~Gq~f~ 151 (224)
.+.+.++|+++|++|-.+-+=+.| +|.-+++.+++.- +|+|=+= -+-|.. .=
T Consensus 98 ~~~l~~~h~~~~~~al~~i~e~I~y~K~~Gphv~VRFtaED~~R~d~~~L~~v~k~a~~~~vDRVsiA-DTvG~~---~P 173 (355)
T TIGR02146 98 KLLLKYKHRKDLEEALEIIAEVIEYAKSHGPHVKVRFTAEDTFRSDLDDLLKVYKTAKEAGVDRVSIA-DTVGVA---TP 173 (355)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE-CCCCCC---CC
T ss_conf 88851025778899999999999999724882478864788851218999999999976188856751-343678---80
Q ss_pred CHHHHHHHHHHHHH-HCCCCE--EEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 01357789986543-138652--698158998899999967998999
Q gi|254780975|r 152 ESTIPKIRQAKALI-GKRSIS--LEVDGGVTSRNIKSLVQAGADLLV 195 (224)
Q Consensus 152 ~~~l~kI~~l~~~~-~~~~~~--I~vDGGvn~~~i~~l~~~Gad~~V 195 (224)
.++++-+++++... +.-+++ ..=|=|+=--|+-..++.||+++=
T Consensus 174 ~~~y~L~~~v~~~VGpg~~~~~H~HND~G~A~ANA~~AiEGGA~~vd 220 (355)
T TIGR02146 174 RRVYELVRKVKRVVGPGVDIEIHAHNDLGLAIANALAAIEGGATVVD 220 (355)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEE
T ss_conf 68999999998640887643563017577999999987530880898
No 465
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=50.37 E-value=20 Score=16.65 Aligned_cols=124 Identities=20% Similarity=0.404 Sum_probs=72.8
Q ss_pred CCCCCCEEEEECCCC----------------------C----CHHHHHHHHHHC-CC--EEEEEEECCCC-------HHH
Q ss_conf 047760799970664----------------------2----158999867764-98--25998523334-------478
Q gi|254780975|r 82 ADAGCDIITFHPESS----------------------P----HIRRSLRTIHAM-GK--KTGVAINPETP-------VAI 125 (224)
Q Consensus 82 ~~~g~d~i~~H~E~~----------------------~----~~~~~i~~i~~~-g~--k~Giai~p~T~-------~~~ 125 (224)
.++|.|-|-+|.-+. + -+.++++.+|+. |. -+|+=|+|... ++.
T Consensus 159 ~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e 238 (363)
T COG1902 159 KEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEE 238 (363)
T ss_pred HHCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHH
T ss_conf 98399989984044449998558755777776688589998899999999999729886699997745467788888999
Q ss_pred ---HHHHHHH---CCEEEEEEEECCC--CC-CCCC-C-HHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCC-CC
Q ss_conf ---9988620---1402899830677--65-3322-0-13577899865431386526981589-988999999679-98
Q gi|254780975|r 126 ---LEDVIDE---IDMILIMTVNPGF--GG-QQLI-E-STIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAG-AD 192 (224)
Q Consensus 126 ---i~~~l~~---~D~vliM~V~PG~--~G-q~f~-~-~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~G-ad 192 (224)
+...|.. +|++.+-+ ++. .+ .... + .-....+. .....+..+.+-|++ +.+.+..+++.| +|
T Consensus 239 ~~~la~~L~~~G~~d~i~vs~--~~~~~~~~~~~~~~~~~~~~a~~---i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aD 313 (363)
T COG1902 239 AVELAKALEEAGLVDYIHVSE--GGYERGGTITVSGPGYQVEFAAR---IKKAVRIPVIAVGGINDPEQAEEILASGRAD 313 (363)
T ss_pred HHHHHHHHHHCCCCCEEEEEC--CCCCCCCCCCCCCCCHHHHHHHH---HHHHCCCCEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 999999998558844799603--64457887444664124789999---9886078779868979999999999829988
Q ss_pred EEEECHHHHCCCCHHHHH
Q ss_conf 999742663789989999
Q gi|254780975|r 193 LLVVGSSFFNQKGEISYA 210 (224)
Q Consensus 193 ~~V~Gsaif~~~d~~~~~ 210 (224)
.+-.|..+.-+|+....+
T Consensus 314 lVa~gR~~ladP~~v~k~ 331 (363)
T COG1902 314 LVAMGRPFLADPDLVLKA 331 (363)
T ss_pred EEEECHHHHCCCCHHHHH
T ss_conf 887263665092089999
No 466
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=50.09 E-value=20 Score=16.62 Aligned_cols=116 Identities=18% Similarity=0.318 Sum_probs=72.2
Q ss_pred EECCCCC-CHHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHHHCC-EEEEEEEECCCCCCCCCCHH----------HHH
Q ss_conf 9706642-158999867764982-5998523334478998862014-02899830677653322013----------577
Q gi|254780975|r 91 FHPESSP-HIRRSLRTIHAMGKK-TGVAINPETPVAILEDVIDEID-MILIMTVNPGFGGQQLIEST----------IPK 157 (224)
Q Consensus 91 ~H~E~~~-~~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~~~D-~vliM~V~PG~~Gq~f~~~~----------l~k 157 (224)
+|....+ .|...++.-++.|.. .|+.+.=.--.+.+..+++.+- =|+|.|-+-++.-++=...- .+-
T Consensus 117 LH~DGD~~YL~~C~~~Y~~~gv~V~G~~~~E~emPe~v~~L~~~~~PDIlViTGHDa~~K~~~~~~DL~aYRhSkyFv~~ 196 (292)
T TIGR02855 117 LHIDGDPEYLRKCLKLYKKLGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHDAYSKNKGNYGDLNAYRHSKYFVET 196 (292)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCEEECCCCHHHHHHCCCCHHHHHH
T ss_conf 74228888999999988661972799998412180889999973099789994666302167871136423665689999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECH-HHHCCCCHH
Q ss_conf 89986543138652698158998899999967998999742-663789989
Q gi|254780975|r 158 IRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGS-SFFNQKGEI 207 (224)
Q Consensus 158 I~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gs-aif~~~d~~ 207 (224)
|+++|+..|+.+--+.--|- =+.+...|++||||..-+=+ -..=.-||.
T Consensus 197 V~~aR~~~P~lD~LVIFAGA-CQShfE~li~AGANFASSP~RVnIHaLDPV 246 (292)
T TIGR02855 197 VREARKYVPSLDQLVIFAGA-CQSHFESLIRAGANFASSPSRVNIHALDPV 246 (292)
T ss_pred HHHHHHHCCCCCCHHHHHCC-CHHHHHHHHHHCCCCCCCCCCHHHHCCCHH
T ss_conf 99986317875323433212-144579999745654577110112226730
No 467
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=49.82 E-value=20 Score=16.59 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=11.3
Q ss_pred CHHHHHHHHHHHHHCC--CCEEEEEE
Q ss_conf 8899999999999659--98999973
Q gi|254780975|r 15 DFSRLGEEISNITKAG--AKQIHFDV 38 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~--~d~iHiDI 38 (224)
+..++.+.++...+.+ +|.+++|+
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~~D~ 47 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDC 47 (308)
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 99999999999998399964699707
No 468
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=49.66 E-value=20 Score=16.58 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=60.0
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCC---HHHHHHHHHHCCEEEEEEEECCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 589998677649825998523334---478998862014028998306776533-2201357789986543138652698
Q gi|254780975|r 99 IRRSLRTIHAMGKKTGVAINPETP---VAILEDVIDEIDMILIMTVNPGFGGQQ-LIESTIPKIRQAKALIGKRSISLEV 174 (224)
Q Consensus 99 ~~~~i~~i~~~g~k~Giai~p~T~---~~~i~~~l~~~D~vliM~V~PG~~Gq~-f~~~~l~kI~~l~~~~~~~~~~I~v 174 (224)
..+.++.+++.|++++|- +-++. ++.+..+ .+|+|=+ ++.+-.+- -.+.....++.+.++....++.+.+
T Consensus 135 ~~~~i~~l~~~G~~iaiD-dfG~~~~~~~~l~~l--~~d~iKl---d~~li~~~~~~~~~~~~~~~l~~~a~~~g~~via 208 (241)
T smart00052 135 AVATLQRLRELGVRIALD-DFGTGYSSLSYLKRL--PVDLLKI---DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVA 208 (241)
T ss_pred HHHHHHHHHHCCCCEEEC-CCCCCCCHHHHHHHC--CCHHHCC---CHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999709978753-789981018999865--7204224---7999961326845589999999999985998999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf 15899889999996799899974266378998
Q gi|254780975|r 175 DGGVTSRNIKSLVQAGADLLVVGSSFFNQKGE 206 (224)
Q Consensus 175 DGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~ 206 (224)
.|==+.+....+.+.|+| ++.|. .|+.|-|
T Consensus 209 egVE~~~~~~~l~~~Gi~-~~QG~-~~~~P~p 238 (241)
T smart00052 209 EGVETPEQLDLLRSLGCD-YGQGY-LFSRPLP 238 (241)
T ss_pred EECCCHHHHHHHHHCCCC-EEECC-CCCCCCC
T ss_conf 718819999999974999-98868-6475899
No 469
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=49.56 E-value=21 Score=16.57 Aligned_cols=99 Identities=20% Similarity=0.307 Sum_probs=49.2
Q ss_pred EEEEECCCCHHHHHHHHHHCC---EEEEEEEECCC--------CCCCCCCHHHH---------------------HHHHH
Q ss_conf 998523334478998862014---02899830677--------65332201357---------------------78998
Q gi|254780975|r 114 GVAINPETPVAILEDVIDEID---MILIMTVNPGF--------GGQQLIESTIP---------------------KIRQA 161 (224)
Q Consensus 114 Giai~p~T~~~~i~~~l~~~D---~vliM~V~PG~--------~Gq~f~~~~l~---------------------kI~~l 161 (224)
.+.+||..-.+.++|++.+-| +||+.|-|||- .++++=+.+.. -++++
T Consensus 118 AvTvnPYmG~Dsv~PFl~~~~KgvfvL~~TSNpgs~d~Q~~~~~~~pLY~~V~~~~~~W~~~~~~~lVVGAT~p~~l~~i 197 (478)
T PRK05500 118 AVTLSPYAGQDHVAPFLVYPDKGVFILCHTSNPGAEALQEYPTQENPFYLQVVKEAKTWGTPEQLGLEVGTTNPEVLAKI 197 (478)
T ss_pred EEEECCCCCCCCCCHHHCCCCCCEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
T ss_conf 79844656755431433169974799982699787889718478982899999999971998867999777989999999
Q ss_pred HHHHHCCCC---EEEEECCCCHHHHHHHHHCCCCE-----EE-ECHHHHCCCCHHHHHHHHHHH
Q ss_conf 654313865---26981589988999999679989-----99-742663789989999999999
Q gi|254780975|r 162 KALIGKRSI---SLEVDGGVTSRNIKSLVQAGADL-----LV-VGSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 162 ~~~~~~~~~---~I~vDGGvn~~~i~~l~~~Gad~-----~V-~Gsaif~~~d~~~~~~~l~~l 216 (224)
|+..|+.-+ .|...||= +..+.++|.|. ++ +-.++.+++|+.+.++.+++-
T Consensus 198 R~~~P~~~lLvPGiGAQGGd----L~~~l~aGLn~~G~GllIpv~r~~l~~~~~~~~~~~l~~~ 257 (478)
T PRK05500 198 RQIAPERLILLRSIWAEGGN----LNQILTAGLNSNGDGLLIPVPQDLLGSANLKEQVKSLREE 257 (478)
T ss_pred HHHCCCCEEECCCCCCCCCC----HHHHHHHCCCCCCCEEEEECCHHHHCCCCHHHHHHHHHHH
T ss_conf 98689987872674667559----9999983478899777896898885599989999999999
No 470
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=49.42 E-value=21 Score=16.55 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEE-----------------ECC---H
Q ss_conf 99999999999659989999734263458434178999986412564168567885-----------------120---3
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMIS-----------------SID---S 76 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~-----------------~P~---~ 76 (224)
..++.....+..-.--|++++ -||.....- ++..++.-++ .+. .+-+|+. +|. +
T Consensus 17 ~~~~~~~~klt~i~p~w~~~~-~~G~l~~~~--~~~~~~~a~~-~~~--kv~~~i~~~~~~~~~~~~~~~~ls~~~~R~~ 90 (313)
T cd02874 17 ESLRANAPYLTYIAPFWYGVD-ADGTLTGLP--DERLIEAAKR-RGV--KPLLVITNLTNGNFDSELAHAVLSNPEARQR 90 (313)
T ss_pred HHHHHHHCCCCEEEEEEEEEC-CCCCCCCCC--CHHHHHHHHH-CCC--EEEEEEECCCCCCCCHHHHHHHHCCHHHHHH
T ss_conf 789962540889999999973-798763579--8799999997-799--5999994677888788999999679999999
Q ss_pred H----HHHHCCCCCCEEEEECCCCC--C---HHHHHHH----HHHCCCEEEEEEECCCCH---------HHHHHHHHHCC
Q ss_conf 3----67640477607999706642--1---5899986----776498259985233344---------78998862014
Q gi|254780975|r 77 H----INIIADAGCDIITFHPESSP--H---IRRSLRT----IHAMGKKTGVAINPETPV---------AILEDVIDEID 134 (224)
Q Consensus 77 ~----i~~~~~~g~d~i~~H~E~~~--~---~~~~i~~----i~~~g~k~Giai~p~T~~---------~~i~~~l~~~D 134 (224)
+ ++.+.+.|-|=|-+..|... + ...+++. +++.|...-+++-|.++. ..+..+.+.+|
T Consensus 91 fi~siv~~~~~~~fDGidiDwE~~~~~d~~~~~~fl~eLr~~l~~~~~~ls~~v~p~~~~~~~~~~~~~yD~~~l~~~vD 170 (313)
T cd02874 91 LINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLHPAGYTLSTAVVPKTSADQFGNWSGAYDYAAIGKIVD 170 (313)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 99999999998199857996323998999999999999999870469779999945756544555322356999975356
Q ss_pred EEEEEEEE
Q ss_conf 02899830
Q gi|254780975|r 135 MILIMTVN 142 (224)
Q Consensus 135 ~vliM~V~ 142 (224)
++.+||=+
T Consensus 171 ~i~vMtYD 178 (313)
T cd02874 171 FVVLMTYD 178 (313)
T ss_pred EEEEEEEC
T ss_conf 99998412
No 471
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=49.27 E-value=21 Score=16.54 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=80.4
Q ss_pred EEEECCEECCCCCCC-HHHHHHHHHC-CCCEEEEEEEEEECC-HHHHHHCCC-CCCEEEEECCCCCCHHHHHHHHHHC--
Q ss_conf 973426345843417-8999986412-564168567885120-336764047-7607999706642158999867764--
Q gi|254780975|r 36 FDVMDGCFVPNISFG-ADVIRSLRSY-SDSVFDCHLMISSID-SHINIIADA-GCDIITFHPESSPHIRRSLRTIHAM-- 109 (224)
Q Consensus 36 iDImDg~fvpn~~~~-~~~i~~i~~~-t~~~~dvHLMv~~P~-~~i~~~~~~-g~d~i~~H~E~~~~~~~~i~~i~~~-- 109 (224)
+|..=|..+-|++.+ |++++.+++. .++..--+.+...|. ++.+++.+. +.|++.|-.-.++-.+..++..|..
T Consensus 43 lD~~~g~~~~~lGh~~p~I~~Ai~~Q~~~l~~~~~~~~~~~~~~lae~L~~~~~~drv~f~~SGSEAvE~AiklAr~~~~ 122 (403)
T PRK05093 43 IDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLVDATFAERVFFANSGAEANEAALKLARRYAC 122 (403)
T ss_pred EECCCCHHHCEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 99550888503289979999999999875577757414889999999986416877599838677899999999999999
Q ss_pred -----CCEE---------------------------------EEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCC
Q ss_conf -----9825---------------------------------99852333447899886201402899830677653322
Q gi|254780975|r 110 -----GKKT---------------------------------GVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLI 151 (224)
Q Consensus 110 -----g~k~---------------------------------Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~ 151 (224)
+.+- ++.--|..+++.++..++ |.+--+-++|-.+.....
T Consensus 123 ~~~~~~r~~ii~~~~~yHG~t~~a~s~~g~~~~~~~~~p~~~~~~~~p~~d~~~l~~~~~--~~iaAviiEPi~g~gG~~ 200 (403)
T PRK05093 123 DRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLAALKAVID--DKTCAVVVEPIQGEGGVI 200 (403)
T ss_pred HHCCCCCCEEEEECCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCEECCCCCHHHHHHCCC--CCEEEEEEECCCCCCCCC
T ss_conf 728998754777758868883687762588011027789997756556336888860337--744799995766789975
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEE---CCC-CHHHH--HHHHHCCCCEEEECHHH
Q ss_conf 013577899865431386526981---589-98899--99996799899974266
Q gi|254780975|r 152 ESTIPKIRQAKALIGKRSISLEVD---GGV-TSRNI--KSLVQAGADLLVVGSSF 200 (224)
Q Consensus 152 ~~~l~kI~~l~~~~~~~~~~I~vD---GGv-n~~~i--~~l~~~Gad~~V~Gsai 200 (224)
+..-+-++++|++..++++.+.+| -|. +.... -+-...-+|+++.|-++
T Consensus 201 ~~~~~yl~~lr~lc~~~gillI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~gKgl 255 (403)
T PRK05093 201 PATPEFLQGLRELCDKHNALLIFDEVQTGMGRTGDLYAYMHYGVTPDILTSAKAL 255 (403)
T ss_pred CCCHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 8999999999986301683798601342688777752223689899889973001
No 472
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=49.14 E-value=21 Score=16.53 Aligned_cols=55 Identities=16% Similarity=0.026 Sum_probs=21.1
Q ss_pred HCCCCEEEEEEEEEECCHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 125641685678851203367640477607-9997066421589998677649825998
Q gi|254780975|r 59 SYSDSVFDCHLMISSIDSHINIIADAGCDI-ITFHPESSPHIRRSLRTIHAMGKKTGVA 116 (224)
Q Consensus 59 ~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~-i~~H~E~~~~~~~~i~~i~~~g~k~Gia 116 (224)
+..++|+-+|. ..--+...+.+.+.+... ..+|+=+.. .+..+.+-+.|..+|++
T Consensus 124 ~~~~lPvviH~-R~A~~~~~~~l~~~~~~~~gi~H~FsG~--~~~a~~~l~~G~yiS~~ 179 (258)
T PRK11449 124 KRYDLPVILHS-RRTHDKLAMHLKRHDLPRTGVVHGFSGS--LQQAERFVQLGYKIGVG 179 (258)
T ss_pred HHHCCCEEEEC-HHHHHHHHHHHHHCCCCCCCEEEECCCC--HHHHHHHHHCCCEEEEC
T ss_conf 98499759862-2137999999985588857547627899--99999999769828765
No 473
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=48.98 E-value=21 Score=16.51 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=75.6
Q ss_pred HHHHHHHHHCCCCEEEEEEEE-----EECCHHHHHHCCCCCCEEEEECCCCC--------------CHHHHH---HHHHH
Q ss_conf 899998641256416856788-----51203367640477607999706642--------------158999---86776
Q gi|254780975|r 51 ADVIRSLRSYSDSVFDCHLMI-----SSIDSHINIIADAGCDIITFHPESSP--------------HIRRSL---RTIHA 108 (224)
Q Consensus 51 ~~~i~~i~~~t~~~~dvHLMv-----~~P~~~i~~~~~~g~d~i~~H~E~~~--------------~~~~~i---~~i~~ 108 (224)
...++.|..-+++|+-|.+=. .|.-+.+..+.++|+.-+ |.|-.. ++++.. +.+++
T Consensus 67 ~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi--~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~ 144 (289)
T COG2513 67 LADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAGI--HIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVE 144 (289)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEE--EEEECCCCHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999998652787688656788738899999999997586266--4532255021278889876789999999999997
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC----CEEEEECCCCHHHHH
Q ss_conf 4982599852333447899886201402899830677653322013577899865431386----526981589988999
Q gi|254780975|r 109 MGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRS----ISLEVDGGVTSRNIK 184 (224)
Q Consensus 109 ~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~----~~I~vDGGvn~~~i~ 184 (224)
.-..+.+.|+.-|+.-....+=+-+.+.+- .++.|-.+ -|.|. +.-..+++++...-. ..+.-.|+=-.-++.
T Consensus 145 a~~~~~fvi~ARTda~~~~~ld~AI~Ra~A-Y~eAGAD~-if~~a-l~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~ 221 (289)
T COG2513 145 ARRDPDFVIIARTDALLVEGLDDAIERAQA-YVEAGADA-IFPEA-LTDLEEIRAFAEAVPVPLPANITEFGKTPLLTVA 221 (289)
T ss_pred HCCCCCEEEEEEHHHHHHCCHHHHHHHHHH-HHHCCCCE-ECCCC-CCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHH
T ss_conf 155888599961487775247999999999-99759768-71366-7999999999984687702686324898876899
Q ss_pred HHHHCCCCEEEECHHHHCCC
Q ss_conf 99967998999742663789
Q gi|254780975|r 185 SLVQAGADLLVVGSSFFNQK 204 (224)
Q Consensus 185 ~l~~~Gad~~V~Gsaif~~~ 204 (224)
.|.++|+..+.-|...|..-
T Consensus 222 ~L~~~Gv~~V~~~~~~~raa 241 (289)
T COG2513 222 ELAELGVKRVSYGLTAFRAA 241 (289)
T ss_pred HHHHCCCEEEEECCHHHHHH
T ss_conf 99966964999784899999
No 474
>PRK13238 tnaA tryptophanase; Provisional
Probab=48.53 E-value=21 Score=16.47 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHH-----CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
Q ss_conf 33344789988620-----140289983067765332201357789986543138652698158998899999
Q gi|254780975|r 119 PETPVAILEDVIDE-----IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSL 186 (224)
Q Consensus 119 p~T~~~~i~~~l~~-----~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l 186 (224)
-+-+++.++.++.. +-+|++...+-.-+|||+ +.+.+|+.+++..++++.+..|..-=.||+--+
T Consensus 159 GN~Dl~kLe~~i~~~g~~~I~~v~~tiTnN~~GGQPV---Sm~Nir~v~~la~~~~ip~~lDaaRfaENAyFI 228 (461)
T PRK13238 159 GNFDLEKLEALIEEVGADNIPFIVMTITNNSAGGQPV---SMANLRAVYEIAKKYGIPVVLDAARFAENAYFI 228 (461)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC---CHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH
T ss_conf 8779999999998738446548999986268788164---689999999999982995998656676645788
No 475
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=47.97 E-value=22 Score=16.41 Aligned_cols=120 Identities=20% Similarity=0.265 Sum_probs=71.9
Q ss_pred HCCCCCCEEEEECCCC--------------------------CCHHHHHHHHHHC-C--CEEEEEEEC------CCCHHH
Q ss_conf 4047760799970664--------------------------2158999867764-9--825998523------334478
Q gi|254780975|r 81 IADAGCDIITFHPESS--------------------------PHIRRSLRTIHAM-G--KKTGVAINP------ETPVAI 125 (224)
Q Consensus 81 ~~~~g~d~i~~H~E~~--------------------------~~~~~~i~~i~~~-g--~k~Giai~p------~T~~~~ 125 (224)
..++|.|.|-+|.-+. .-+.++++.+|+. + .-.++=|+. +..++.
T Consensus 565 A~~AGFD~IEiH~AHGYLl~qFLSPlsN~RtDeYGGsleNR~Rf~lEV~~aVR~~~p~~~Pl~vRiSatDw~~gG~t~ed 644 (770)
T PRK08255 565 AAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPADKPMSVRISAHDWVEGGNTPDD 644 (770)
T ss_pred HHHCCCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHH
T ss_conf 99839998999523455588753864467754357888877788999999999867898866999851025689999999
Q ss_pred ---HHHHHHH--CCEEEEEEE--ECCC---CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCC-CCE
Q ss_conf ---9988620--140289983--0677---6533220135778998654313865269815899-88999999679-989
Q gi|254780975|r 126 ---LEDVIDE--IDMILIMTV--NPGF---GGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAG-ADL 193 (224)
Q Consensus 126 ---i~~~l~~--~D~vliM~V--~PG~---~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~G-ad~ 193 (224)
+...+.. +|+|-+=+- .|+. .|..|+-.--++|| .+.++....=|.|+ .+.+..++..| ||.
T Consensus 645 sv~la~~l~~~GvD~IdvSsGg~~~~~~p~~g~~yQvpfA~~Ir------~e~~i~t~AVG~I~~p~~Ae~Il~~GrADl 718 (770)
T PRK08255 645 AVEIARAFKAAGADMIDVSSGQVSKDEKPVYGRMYQTPFADRIR------NEAGIATIAVGAISEADHVNSIIAAGRADL 718 (770)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHH------HHCCCCEEEECCCCCHHHHHHHHHCCCCCE
T ss_conf 99999999974998999578888866778888765669999999------875997899618899999999997699887
Q ss_pred EEECHHHHCCCCH
Q ss_conf 9974266378998
Q gi|254780975|r 194 LVVGSSFFNQKGE 206 (224)
Q Consensus 194 ~V~Gsaif~~~d~ 206 (224)
+.+|.....+|..
T Consensus 719 ValgR~~L~dP~W 731 (770)
T PRK08255 719 CALARPHLADPAW 731 (770)
T ss_pred EEECHHHHCCCCH
T ss_conf 5247776519950
No 476
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=47.77 E-value=22 Score=16.39 Aligned_cols=165 Identities=18% Similarity=0.289 Sum_probs=98.9
Q ss_pred EEEEECCEECCCCCC-CHHHHHHHHHCCCCE-EEEEEEEEECC-HHHHHHCCCC--CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 997342634584341-789999864125641-68567885120-3367640477--607999706642158999867764
Q gi|254780975|r 35 HFDVMDGCFVPNISF-GADVIRSLRSYSDSV-FDCHLMISSID-SHINIIADAG--CDIITFHPESSPHIRRSLRTIHAM 109 (224)
Q Consensus 35 HiDImDg~fvpn~~~-~~~~i~~i~~~t~~~-~dvHLMv~~P~-~~i~~~~~~g--~d~i~~H~E~~~~~~~~i~~i~~~ 109 (224)
.+|..-|.=|.|++- .|.+++.+++.-+.. .--++...+|. .+.+++.+.- .|+++|---.++-.+-.++..|..
T Consensus 44 YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~ 123 (404)
T COG4992 44 YLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKY 123 (404)
T ss_pred EEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 66603551110257789899999999997762113133786999999999962866668997578389999999999997
Q ss_pred CC---EEE----------------------------------EEEECCCCHHHHHHHHHHCCEEEEEEEEC--CCCCCCC
Q ss_conf 98---259----------------------------------98523334478998862014028998306--7765332
Q gi|254780975|r 110 GK---KTG----------------------------------VAINPETPVAILEDVIDEIDMILIMTVNP--GFGGQQL 150 (224)
Q Consensus 110 g~---k~G----------------------------------iai~p~T~~~~i~~~l~~~D~vliM~V~P--G~~Gq~f 150 (224)
.. |.. +..-|..+++.++..++. |..-+| ++| |-+| .
T Consensus 124 ~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~-~taAvi-vEPIQGEgG--V 199 (404)
T COG4992 124 TGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDE-DTAAVI-VEPIQGEGG--V 199 (404)
T ss_pred CCCCCCCEEEEECCCCCCCCCEEEECCCCHHHCCCCCCCCCCCEECCCCCHHHHHHHHCC-CEEEEE-EECCCCCCC--C
T ss_conf 088887579997477577662336656884222678899999536178998999987365-758999-826668889--8
Q ss_pred CCHHHHHHHHHHHHHHCCCCEE---EEECCC-CHHHH--HHHHHCCCCEEEECHHHHCC
Q ss_conf 2013577899865431386526---981589-98899--99996799899974266378
Q gi|254780975|r 151 IESTIPKIRQAKALIGKRSISL---EVDGGV-TSRNI--KSLVQAGADLLVVGSSFFNQ 203 (224)
Q Consensus 151 ~~~~l~kI~~l~~~~~~~~~~I---~vDGGv-n~~~i--~~l~~~Gad~~V~Gsaif~~ 203 (224)
++..-+-++.+|++.++++.-+ ||.=|+ +.-.+ -+....-+|++.++-+|=+.
T Consensus 200 ~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tlaK~LgGG 258 (404)
T COG4992 200 IPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLAKALGGG 258 (404)
T ss_pred CCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 77998999999999987192999964313888663178989748887778860124588
No 477
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=47.51 E-value=22 Score=16.37 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCHHHHHHHHHCCC
Q ss_conf 32201357789986543138652--69815899889999996799
Q gi|254780975|r 149 QLIESTIPKIRQAKALIGKRSIS--LEVDGGVTSRNIKSLVQAGA 191 (224)
Q Consensus 149 ~f~~~~l~kI~~l~~~~~~~~~~--I~vDGGvn~~~i~~l~~~Ga 191 (224)
.|.+..+.-.+++-+.+.+++.. +.++|.. ...+..+.+.+.
T Consensus 248 qfeeF~~Pylkkl~~~i~~~G~~~~lh~~G~~-~~~~e~l~elp~ 291 (378)
T cd03308 248 QFEKFYWPSFKKVVEGLAARGQRIFLFFEGDW-ERYLEYLQELPK 291 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHHHHCCC
T ss_conf 98886206599999999966980599966870-779999985235
No 478
>KOG2672 consensus
Probab=47.44 E-value=22 Score=16.36 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=20.3
Q ss_pred EECCHHHHHHCCCCCCEEEEECCC--------CCCHHHHHHHHHHCCCE
Q ss_conf 512033676404776079997066--------42158999867764982
Q gi|254780975|r 72 SSIDSHINIIADAGCDIITFHPES--------SPHIRRSLRTIHAMGKK 112 (224)
Q Consensus 72 ~~P~~~i~~~~~~g~d~i~~H~E~--------~~~~~~~i~~i~~~g~k 112 (224)
..|++-.+.++.-|.+||.+-.-- .+++.+++++|+...-.
T Consensus 142 ~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~ 190 (360)
T KOG2672 142 NEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAPE 190 (360)
T ss_pred CCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9864489999971888699971145647675227899999999852842
No 479
>pfam10566 Glyco_hydro_97 Glycoside hydrolase 97. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands.
Probab=47.42 E-value=21 Score=16.50 Aligned_cols=40 Identities=10% Similarity=0.025 Sum_probs=19.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCC------HHHHHHHHHCCCCEEEEC
Q ss_conf 8998654313865269815899------889999996799899974
Q gi|254780975|r 158 IRQAKALIGKRSISLEVDGGVT------SRNIKSLVQAGADLLVVG 197 (224)
Q Consensus 158 I~~l~~~~~~~~~~I~vDGGvn------~~~i~~l~~~Gad~~V~G 197 (224)
++++-++-.++++.|.+=.+.+ .+-.+.+.+.|+.-+=.|
T Consensus 353 l~~lv~Ya~~KgV~i~lw~~~~~~~~~~~~~f~~~~~~Gv~GvKvd 398 (643)
T pfam10566 353 LQELIAYGKSKGVGIILWTNQKALYAQLDEAFKLYEKWGVVGFKVD 398 (643)
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 7999999986796399983566789989999999998299727756
No 480
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase; InterPro: IPR004621 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in eukaryotes, and currently designated methylenetetrahydrofolate reductase (1.5.1.20 from EC). This protein is an FAD-containing flavoprotein.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process.
Probab=47.29 E-value=22 Score=16.35 Aligned_cols=84 Identities=21% Similarity=0.338 Sum_probs=48.1
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE----
Q ss_conf 5899986776498259985233344789988620140289983067765332201357789986543138652698----
Q gi|254780975|r 99 IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEV---- 174 (224)
Q Consensus 99 ~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~v---- 174 (224)
+...++.+++.|++=-|||+-+=|.. .-||+---.++=||. .+.+-||.+|.-+..+ |.|.|
T Consensus 82 ID~AL~~~~~~G~~NiLALRGDPP~~-------~~~wlds~~~EgGF~------YA~DLV~yIr~~YGD~-F~IgVAGYP 147 (312)
T TIGR00677 82 IDDALERAKSNGIQNILALRGDPPHG-------DEDWLDSTEVEGGFK------YAVDLVKYIRSKYGDY-FCIGVAGYP 147 (312)
T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCC-------CCCCCCCCCCCCCHH------HHHHHHHHHHHHCCCC-CCEEECCCC
T ss_conf 99999999865653340037610687-------655334567875157------6678899877523880-211202787
Q ss_pred -----------------EC------CCCHHHHHHHHHCCCCEEEE
Q ss_conf -----------------15------89988999999679989997
Q gi|254780975|r 175 -----------------DG------GVTSRNIKSLVQAGADLLVV 196 (224)
Q Consensus 175 -----------------DG------Gvn~~~i~~l~~~Gad~~V~ 196 (224)
|. --..+.+++=+++|||.+|-
T Consensus 148 EgHpe~i~~Gla~~~~kd~GheqdP~~DL~yLK~KV~aGADfIiT 192 (312)
T TIGR00677 148 EGHPEAIEDGLASNEAKDVGHEQDPEKDLKYLKEKVDAGADFIIT 192 (312)
T ss_pred CCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 778346652025775324675457367899998863058974752
No 481
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=46.97 E-value=22 Score=16.31 Aligned_cols=193 Identities=15% Similarity=0.226 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHC-----CCCEEEEEEECCEECCCCCCCHHHH----HHHHHCCCCE--EEEEEEEEECC----HHHHH
Q ss_conf 89999999999965-----9989999734263458434178999----9864125641--68567885120----33676
Q gi|254780975|r 16 FSRLGEEISNITKA-----GAKQIHFDVMDGCFVPNISFGADVI----RSLRSYSDSV--FDCHLMISSID----SHINI 80 (224)
Q Consensus 16 ~~~l~~~i~~l~~~-----~~d~iHiDImDg~fvpn~~~~~~~i----~~i~~~t~~~--~dvHLMv~~P~----~~i~~ 80 (224)
...|.+|++...+. .++.+|+ --|+ |++ ++++.+ ..|++..++. .|+-+- -||. .++..
T Consensus 85 l~~L~~Ei~~~~~~l~~~~~v~~i~~--GGGT--Ps~-L~~~~l~~l~~~l~~~f~~~~~~EitiE-~nP~~~~~~~l~~ 158 (456)
T PRK09249 85 LDALEKEIALVAPLLPGGRKVSQLHW--GGGT--PTF-LSPEQLTRLMALLREHFNFAPDAEISIE-IDPRELDLEMLDA 158 (456)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEE--CCCC--HHH-CCHHHHHHHHHHHHHHCCCCCCCEEEEE-ECCCCCCHHHHHH
T ss_conf 99999999998876178983679997--8967--064-9999999999999986688988359998-4347587999999
Q ss_pred HCCCCCCEEEEECCCC--------------CCHHHHHHHHHHCCCE-EEEEE---ECCCCHHHHHHHHHH-----CCEEE
Q ss_conf 4047760799970664--------------2158999867764982-59985---233344789988620-----14028
Q gi|254780975|r 81 IADAGCDIITFHPESS--------------PHIRRSLRTIHAMGKK-TGVAI---NPETPVAILEDVIDE-----IDMIL 137 (224)
Q Consensus 81 ~~~~g~d~i~~H~E~~--------------~~~~~~i~~i~~~g~k-~Giai---~p~T~~~~i~~~l~~-----~D~vl 137 (224)
+.++|++++++=+-+. +...+.++.+|+.|.. +.+-| -|+...+.+..-+.. .|.|-
T Consensus 159 l~~~GvnRiSlGVQsfd~~vl~~igR~h~~~~~~~~i~~ar~~Gf~~in~DLIyGLP~QT~~~~~~tl~~~~~l~Pdhis 238 (456)
T PRK09249 159 LRELGFNRLSLGVQDFDPEVQKAINRIQPFELTFALVEAARELGFTSINFDLIYGLPKQTPESFARTLEKVLELRPDRLA 238 (456)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 98459756886053578799998528899999999999999819972104886069987699999999999655998899
Q ss_pred EEE--EECC-CCCCCCC-----CHHHHHHH---HHHHHHHCCCCE-EEEECCCCHH-HHHHH--------------HHCC
Q ss_conf 998--3067-7653322-----01357789---986543138652-6981589988-99999--------------9679
Q gi|254780975|r 138 IMT--VNPG-FGGQQLI-----ESTIPKIR---QAKALIGKRSIS-LEVDGGVTSR-NIKSL--------------VQAG 190 (224)
Q Consensus 138 iM~--V~PG-~~Gq~f~-----~~~l~kI~---~l~~~~~~~~~~-I~vDGGvn~~-~i~~l--------------~~~G 190 (224)
+.+ ..|. +..|..+ |..-+|.. ...+.+.+.++. |++|-=.... .+... ...+
T Consensus 239 ~y~yah~P~~~~~qr~i~~~~LP~~~~~~~m~~~a~~~L~~aGY~~igidhFA~p~DeLa~A~~~g~l~RNfqGYt~~~~ 318 (456)
T PRK09249 239 VFNYAHVPWLFKAQRKIDEADLPSPEEKLEILQAAIETLTEAGYQYIGMDHFALPDDELAIAQREGTLHRNFQGYTTDGD 318 (456)
T ss_pred ECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHCCCEEECCCCCCCCCC
T ss_conf 50223472045565303656797999999999999999997798585356444788479999865964565625557999
Q ss_pred CCEEEEC-HHH--------HCCCCHHHHHHHHH
Q ss_conf 9899974-266--------37899899999999
Q gi|254780975|r 191 ADLLVVG-SSF--------FNQKGEISYAKRLN 214 (224)
Q Consensus 191 ad~~V~G-sai--------f~~~d~~~~~~~l~ 214 (224)
.|.+=.| ||+ .|.++...+.+.+.
T Consensus 319 ~~~lGlG~sA~S~~~~~~~qN~~~l~~Y~~~i~ 351 (456)
T PRK09249 319 CDLLGLGVSAISRIGDGYAQNAKDLKAYYAAVD 351 (456)
T ss_pred CCEEEECCCCCEECCCCEEECCCCHHHHHHHHH
T ss_conf 855974464310059955775769999999987
No 482
>TIGR01179 galE UDP-glucose 4-epimerase; InterPro: IPR005886 Synonym: UDP-galactose 4-epimerase UDP-glucose 4-epimerase (5.1.3.2 from EC) interconverts UDP-glucose and UDP-galactose which are precursors of glucose- and galactose-containing exopolysaccharides (EPS). A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded and described by a separate model. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0006012 galactose metabolic process.
Probab=46.90 E-value=12 Score=18.12 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=6.2
Q ss_pred EEEC-C-CCCCCCCCHH
Q ss_conf 8306-7-7653322013
Q gi|254780975|r 140 TVNP-G-FGGQQLIEST 154 (224)
Q Consensus 140 ~V~P-G-~~Gq~f~~~~ 154 (224)
+-.| | -=||.-.+.+
T Consensus 185 GA~p~GY~iGe~~~~~t 201 (341)
T TIGR01179 185 GADPEGYEIGEDPPGIT 201 (341)
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 44888772366852029
No 483
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=46.74 E-value=23 Score=16.29 Aligned_cols=172 Identities=17% Similarity=0.147 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEE--EEEEEE--EECCHHHHHHCCCCCCEEEEEC
Q ss_conf 999999999965998999973426345843417899998641256416--856788--5120336764047760799970
Q gi|254780975|r 18 RLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVF--DCHLMI--SSIDSHINIIADAGCDIITFHP 93 (224)
Q Consensus 18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~--dvHLMv--~~P~~~i~~~~~~g~d~i~~H~ 93 (224)
+-.+-.+.|++.|+|++-+ |.++- -...++.++.+.. ..++ .+-.-. .+-..-++.+..+|++.|.+-.
T Consensus 25 ~Ki~Ia~~Ld~lGv~~IE~----g~p~~-s~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~~i~if~ 97 (409)
T COG0119 25 EKIRIAKALDDLGVDYIEA----GFPVA-SPGDFEFVRAIAE--KAGLFICALIAALARAIKRDIEALLEAGVDRIHIFI 97 (409)
T ss_pred HHHHHHHHHHHCCCCEEEE----ECCCC-CHHHHHHHHHHHH--HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9999999999769987997----27868-8546999999987--468632202233178677559999757999899997
Q ss_pred CCCC----------------CHHHHHHHHHHCCCEEEEEEEC--CCCHHHHHHHHHHCCEEEEEEEE-CCCCCCCCCCHH
Q ss_conf 6642----------------1589998677649825998523--33447899886201402899830-677653322013
Q gi|254780975|r 94 ESSP----------------HIRRSLRTIHAMGKKTGVAINP--ETPVAILEDVIDEIDMILIMTVN-PGFGGQQLIEST 154 (224)
Q Consensus 94 E~~~----------------~~~~~i~~i~~~g~k~Giai~p--~T~~~~i~~~l~~~D~vliM~V~-PG~~Gq~f~~~~ 154 (224)
-+.+ -..+.+++++++|..+....-- .|+++.+....+.+-..-.-.++ |---|-.--...
T Consensus 98 ~tSd~h~~~~~~~t~~e~l~~~~~~v~~a~~~g~~~~~~~Ed~~rt~~e~l~~~~~~~~~~ga~~i~l~DTvG~~~P~~~ 177 (409)
T COG0119 98 ATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVGVATPNEV 177 (409)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
T ss_conf 47889999884899999999999999999973975898753133679999999999999719949997787686587999
Q ss_pred HHHHHHHHHHHHC-CC--CEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 5778998654313-86--526981589988999999679989997
Q gi|254780975|r 155 IPKIRQAKALIGK-RS--ISLEVDGGVTSRNIKSLVQAGADLLVV 196 (224)
Q Consensus 155 l~kI~~l~~~~~~-~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~ 196 (224)
.+.++.+++-.++ .. +...=|-|.---|.-...++||+.+=.
T Consensus 178 ~~~i~~l~~~v~~~~~i~~H~HND~G~AvANslaAv~aGa~~v~~ 222 (409)
T COG0119 178 ADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVEG 222 (409)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 999999998378887388983698565999999999848838999
No 484
>TIGR00874 talAB transaldolase; InterPro: IPR004730 Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate. Transaldolase is evolutionary related to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0004801 transaldolase activity, 0006098 pentose-phosphate shunt, 0005737 cytoplasm.
Probab=46.52 E-value=12 Score=17.97 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHCCCCE------EEEEEEEEECCHHHHHHCCCCCC--EEEEECCCCCCHHHHHHHHH-HCCCEEEEEE
Q ss_conf 1789999864125641------68567885120336764047760--79997066421589998677-6498259985
Q gi|254780975|r 49 FGADVIRSLRSYSDSV------FDCHLMISSIDSHINIIADAGCD--IITFHPESSPHIRRSLRTIH-AMGKKTGVAI 117 (224)
Q Consensus 49 ~~~~~i~~i~~~t~~~------~dvHLMv~~P~~~i~~~~~~g~d--~i~~H~E~~~~~~~~i~~i~-~~g~k~Giai 117 (224)
||.++++-+.-.-... +|..=||+.-...+..|.+.|++ +|-+-.-+|=+=-+.-+.+- +.|+.|=+.|
T Consensus 83 fG~eILK~vPGRvStEvDARLSfd~~A~i~kA~~Li~Ly~~~G~~k~RiLiKiASTWeGI~AAe~LE~~~GI~CNlTL 160 (324)
T TIGR00874 83 FGLEILKIVPGRVSTEVDARLSFDTEATIEKARHLIKLYEKAGVDKKRILIKIASTWEGIRAAEELEVKEGIHCNLTL 160 (324)
T ss_pred HHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf 877886117993201100213556588999999999999965899450577528761478999998874796402288
No 485
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase; InterPro: IPR006405 A deep split separates two related families of proteins, one of which includes experimentally characterised examples of nicotinate phosphoribosyltransferase, the first enzyme of NAD salvage biosynthesis. This entry represents the other family. Members have a different (longer) spacing of several key motifs and have an additional C-terminal domain of up to 100 residues. One argument suggesting that this family represents the same enzyme is that no species has a member of both families. Another is that the gene encoding this protein is located near other NAD salvage biosynthesis genes in Nostoc and in at least four different Gram-positive bacteria. NAD and NADP are ubiquitous in life. Most members of this family are from Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cut-offs. .
Probab=46.51 E-value=23 Score=16.27 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=61.3
Q ss_pred HHHHHHHHHHCCCEEEEEEEC-CCCHHHHHHHHHHC----CEEE-EEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC---
Q ss_conf 589998677649825998523-33447899886201----4028-99830677653322013577899865431386---
Q gi|254780975|r 99 IRRSLRTIHAMGKKTGVAINP-ETPVAILEDVIDEI----DMIL-IMTVNPGFGGQQLIESTIPKIRQAKALIGKRS--- 169 (224)
Q Consensus 99 ~~~~i~~i~~~g~k~Giai~p-~T~~~~i~~~l~~~----D~vl-iM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~--- 169 (224)
.+-+-.+.+-++..+-+=|.- +|=-+-+.+.+.-. +..- +++|..--| +...-=+++|+.+++.+
T Consensus 236 ~~AFrAYA~~YP~~~~lL~DTYDtL~SG~~nai~va~eLg~~~~~~~gVRiDSG------DL~~LSk~~R~~LD~AGaqf 309 (523)
T TIGR01513 236 LEAFRAYAKLYPKNTVLLVDTYDTLRSGLPNAIAVAKELGEQGKEVVGVRIDSG------DLAYLSKKVRKELDEAGAQF 309 (523)
T ss_pred HHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHH------HHHHHHHHHHHHHHHHCHHC
T ss_conf 899999999758971675111667767899999999997520550588996117------79999999999998611111
Q ss_pred ----C---EEEEECCCCHHHHHHHHHCC--CCEEEECHHHHCCCC
Q ss_conf ----5---26981589988999999679--989997426637899
Q gi|254780975|r 170 ----I---SLEVDGGVTSRNIKSLVQAG--ADLLVVGSSFFNQKG 205 (224)
Q Consensus 170 ----~---~I~vDGGvn~~~i~~l~~~G--ad~~V~Gsaif~~~d 205 (224)
+ +|.|=|++.+..|..|...| +|++=+|+.+.-+.+
T Consensus 310 qvPWL~~vkI~VSn~LDE~~I~~L~~~gapID~~GVGT~LvTa~~ 354 (523)
T TIGR01513 310 QVPWLEEVKIVVSNDLDENSIAALKAEGAPIDVYGVGTSLVTASD 354 (523)
T ss_pred CCCCHHCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCEEEECCC
T ss_conf 586003754899674047899999965894538884678898478
No 486
>PRK05826 pyruvate kinase; Provisional
Probab=46.26 E-value=23 Score=16.24 Aligned_cols=145 Identities=14% Similarity=0.161 Sum_probs=77.8
Q ss_pred EEECCHHHHHHCCCCCCEEEEECC-CCCCHHHHHHHHHHCC-CEEEEEEECCCC--HHHHHHHHHHCCEEEEE----EEE
Q ss_conf 851203367640477607999706-6421589998677649-825998523334--47899886201402899----830
Q gi|254780975|r 71 ISSIDSHINIIADAGCDIITFHPE-SSPHIRRSLRTIHAMG-KKTGVAINPETP--VAILEDVIDEIDMILIM----TVN 142 (224)
Q Consensus 71 v~~P~~~i~~~~~~g~d~i~~H~E-~~~~~~~~i~~i~~~g-~k~Giai~p~T~--~~~i~~~l~~~D~vliM----~V~ 142 (224)
++.=.+.++...+.|+|+|.+-+= +.+++.++-+.+++.| .++.|--.-+|+ ++.+..++...|.|++= +++
T Consensus 172 TekD~~di~fa~~~~vD~ialSFVrsa~DV~~lr~~l~~~~~~~~~IIaKIE~~~al~NldeIi~~sDgIMIARGDLgvE 251 (461)
T PRK05826 172 TEKDKADIKFAAEQGVDYIAVSFVRNAEDVEEARRLLREAGNCDAKIIAKIERAEAVDNLDEIIEASDGIMVARGDLGVE 251 (461)
T ss_pred CHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEECCCCCCC
T ss_conf 86689999999976999997468898678999999999729998448998368899873999998658999977853032
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC----------C---HHHHHHHHHCCCCEEEECHHHHCCCCHHHH
Q ss_conf 677653322013577899865431386526981589----------9---889999996799899974266378998999
Q gi|254780975|r 143 PGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV----------T---SRNIKSLVQAGADLLVVGSSFFNQKGEISY 209 (224)
Q Consensus 143 PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv----------n---~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~ 209 (224)
-++.--+ .-=+++-+...+.+-.+.|-.-+ + ...+...+--|+|.+.+..---..+.|.++
T Consensus 252 i~~e~vp------~~Qk~Ii~~c~~~gkpvivATqmLeSM~~~p~PTRAEv~DVanAv~dG~DavmLS~ETA~G~yPv~a 325 (461)
T PRK05826 252 IPDAEVP------GLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEA 325 (461)
T ss_pred CCHHHHH------HHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHCCCCCHHHH
T ss_conf 6876749------9999999988754998999765689760799997277878999998368789974322378788999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999786
Q gi|254780975|r 210 AKRLNDLKKSAL 221 (224)
Q Consensus 210 ~~~l~~l~~~a~ 221 (224)
.+.+..+...++
T Consensus 326 V~~m~~I~~~aE 337 (461)
T PRK05826 326 VEAMARICKGAE 337 (461)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997
No 487
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=46.09 E-value=23 Score=16.23 Aligned_cols=24 Identities=8% Similarity=0.329 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHCC--CCEEEEEE
Q ss_conf 8899999999999659--98999973
Q gi|254780975|r 15 DFSRLGEEISNITKAG--AKQIHFDV 38 (224)
Q Consensus 15 d~~~l~~~i~~l~~~~--~d~iHiDI 38 (224)
+..++.+.+++..+.+ +|.+++|+
T Consensus 22 ~~~ev~~~~~~~r~~~iP~d~~~lD~ 47 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDL 47 (317)
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 89999999999997498950899956
No 488
>pfam01212 Beta_elim_lyase Beta-eliminating lyase.
Probab=45.30 E-value=24 Score=16.15 Aligned_cols=91 Identities=23% Similarity=0.352 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHC-----CEEEEEEEE-C--CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-------HHHHHHH
Q ss_conf 447899886201-----402899830-6--776533220135778998654313865269815899-------8899999
Q gi|254780975|r 122 PVAILEDVIDEI-----DMILIMTVN-P--GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-------SRNIKSL 186 (224)
Q Consensus 122 ~~~~i~~~l~~~-----D~vliM~V~-P--G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-------~~~i~~l 186 (224)
.++.++..+..- ..+-+.+++ | ..+||.+- ++.+++++++..++++.+.+||-== ....+++
T Consensus 110 ~~~~l~~~i~~~~~~h~~~~~~v~le~t~n~~gG~~~~---~~el~~i~~~a~~~gl~lHmDGARl~nA~~a~~~~~~e~ 186 (288)
T pfam01212 110 DLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVS---LEELREIRAIAREHGIPLHLDGARLANAAVALGVIVKEI 186 (288)
T ss_pred CHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCEECC---HHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCHHHH
T ss_conf 99999998764498546765479999554488966557---899999999999809937630878988887609998898
Q ss_pred HHCCCCEEEE----------CHHHHCCCCHHHHHHHHHHH
Q ss_conf 9679989997----------42663789989999999999
Q gi|254780975|r 187 VQAGADLLVV----------GSSFFNQKGEISYAKRLNDL 216 (224)
Q Consensus 187 ~~~Gad~~V~----------Gsaif~~~d~~~~~~~l~~l 216 (224)
. .++|.+.. ||.|+.+++.++.++++++.
T Consensus 187 ~-~~~D~v~~~~sK~lga~~Gavl~g~~~~i~~a~~~rk~ 225 (288)
T pfam01212 187 T-SYADSVSMSLSKGLGAPVGSVLAGSDDFIAYAIRQRKY 225 (288)
T ss_pred H-CCCCEEEEEEECCCCCCEEEEEEECHHHHHHHHHHHHH
T ss_conf 5-46888999843578861003898289999999999999
No 489
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=45.23 E-value=24 Score=16.14 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=13.4
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 7063258899999999999659989999
Q gi|254780975|r 9 PSILAADFSRLGEEISNITKAGAKQIHF 36 (224)
Q Consensus 9 pSil~~d~~~l~~~i~~l~~~~~d~iHi 36 (224)
.|+.-.......+.+.++-++|++.+-+
T Consensus 68 ~svIfVPp~~a~dAi~EAi~agI~~iV~ 95 (289)
T PRK05678 68 ASVIYVPPPFAADAILEAIDAGIDLIVC 95 (289)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCEEEE
T ss_conf 6999707899999999998679988999
No 490
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit; InterPro: IPR012721 Members of this eukaryotic family are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT theta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=44.82 E-value=19 Score=16.74 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=9.2
Q ss_pred EECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 815899889999996799899974
Q gi|254780975|r 174 VDGGVTSRNIKSLVQAGADLLVVG 197 (224)
Q Consensus 174 vDGGvn~~~i~~l~~~Gad~~V~G 197 (224)
||=|||. ++-|.+-+--.|+.|
T Consensus 395 iDDGVN~--~K~L~KD~GGrl~pG 416 (554)
T TIGR02346 395 IDDGVNV--IKALVKDNGGRLLPG 416 (554)
T ss_pred HHCCHHH--HHEEECCCCCCEECC
T ss_conf 3043121--010005898615057
No 491
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=44.69 E-value=24 Score=16.09 Aligned_cols=184 Identities=14% Similarity=0.205 Sum_probs=107.7
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCE--ECCCCCCCHHHHHHHHH--CCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf 7063258899999999999659989999734263--45843417899998641--2564168567885120336764047
Q gi|254780975|r 9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGC--FVPNISFGADVIRSLRS--YSDSVFDCHLMISSIDSHINIIADA 84 (224)
Q Consensus 9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~--fvpn~~~~~~~i~~i~~--~t~~~~dvHLMv~~P~~~i~~~~~~ 84 (224)
|++=+.|+..+.--++..++.+..-+ +-+-.|. |.+.+-.-...++.+.. ..+.|+-+||==-.-...+....++
T Consensus 21 ~afNv~n~e~~~avi~AAee~~sPvI-lq~s~~~~~~~~g~~~~~~~~~~~~~~~~a~VPV~lHLDH~~~~e~~~~ai~~ 99 (286)
T PRK08610 21 GQYNINNLEFTQAILEASQEENAPVI-LGVSEGAARYMSGFYTIVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDA 99 (286)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEE-EEECCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHC
T ss_conf 98766989999999999999687999-99176688765768899999999999837998889989899999999999971
Q ss_pred CCCEEEEECCCCC---C---HHHHHHHHHHCCCEE----EEEE--------E--CCCCHHHHHHHHHH--CCEEEEEEEE
Q ss_conf 7607999706642---1---589998677649825----9985--------2--33344789988620--1402899830
Q gi|254780975|r 85 GCDIITFHPESSP---H---IRRSLRTIHAMGKKT----GVAI--------N--PETPVAILEDVIDE--IDMILIMTVN 142 (224)
Q Consensus 85 g~d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Giai--------~--p~T~~~~i~~~l~~--~D~vliM~V~ 142 (224)
|-+.|-|-.-..+ + -.++.++++..|+.+ |-.= . -.|.++....+... +|.+ .|-
T Consensus 100 GFtSVM~DgS~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~peea~~Fv~~TgvD~L---Ava 176 (286)
T PRK08610 100 GFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDAL---APA 176 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE---EEE
T ss_conf 99989981998989999999999999998708826997521367567766754303799999999997398667---311
Q ss_pred CCC-----CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 677-----6533220135778998654313865269815--8998899999967998999742663
Q gi|254780975|r 143 PGF-----GGQQLIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFF 201 (224)
Q Consensus 143 PG~-----~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif 201 (224)
-|. .|.+-+ -+++++++++. .++++-.-| |+..+.++++++.|+.-+-.|+-+.
T Consensus 177 iGt~HG~yk~~p~l--~~~~L~~I~~~---~~vPLVLHGgSGi~~e~i~~ai~~Gi~KvNi~T~l~ 237 (286)
T PRK08610 177 LGSVHGPYKGEPKL--GFKEMEEIGLS---TGLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQ 237 (286)
T ss_pred CCCCCCCCCCCCCC--CHHHHHHHHHH---CCCCEEEECCCCCCHHHHHHHHHCCCEEEEECCHHH
T ss_conf 15544655899877--89999999852---499979658999999999999985984899671889
No 492
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=44.57 E-value=24 Score=16.08 Aligned_cols=171 Identities=19% Similarity=0.225 Sum_probs=76.1
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCH--HHHHHCCCCCCE
Q ss_conf 632588999999999996599899997342634584341789999864125641685678851203--367640477607
Q gi|254780975|r 11 ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDS--HINIIADAGCDI 88 (224)
Q Consensus 11 il~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~--~i~~~~~~g~d~ 88 (224)
+.|+...+. +.+-++|++-+.+ -+-..++..++.+....+...++++||++|+. .+..+.......
T Consensus 44 i~~atl~EA----e~~~~~G~~dIl~--------a~pi~~~~~l~rl~~l~~~~~~i~~~VDs~~~~~~l~~~a~~~~~~ 111 (345)
T cd07376 44 VTVATLAEA----ETFAEAGVKDILM--------AYPLVGPAAIARLAGLLRQEAEFHVLVDSPEALAALAAFAAAHGVR 111 (345)
T ss_pred EEEECHHHH----HHHHHCCCCCEEE--------ECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCE
T ss_conf 999469999----9999769983899--------6688998999999998634983899970899999999999865982
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEE--ECCCCCCC--------CCCHHHHHH
Q ss_conf 99970664215899986776498259985233344789988620140289983--06776533--------220135778
Q gi|254780975|r 89 ITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTV--NPGFGGQQ--------LIESTIPKI 158 (224)
Q Consensus 89 i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V--~PG~~Gq~--------f~~~~l~kI 158 (224)
+-+-.|-. .-+-++|+.-....-+ .+...+...+.+-+-++ .+|..... ...+....+
T Consensus 112 ~~V~ievD-----------~G~~R~Gv~~~~~~~l-~l~~~i~~~~~l~l~G~~~y~Gh~~~~~~~~~~~~~~~~~~~~~ 179 (345)
T cd07376 112 LRVMLEVD-----------VGGHRSGVRPEEAAAL-ALADAVQASPGLRLAGVMAYEGHIYGAGGAREGAQARDQAVAAV 179 (345)
T ss_pred EEEEEEEC-----------CCCCCCCCCCCHHHHH-HHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 78999978-----------8998588888779999-99999853999189899974712069999899999999999999
Q ss_pred HHHHHHHHCCCCE-EEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf 9986543138652-69815899889999996799899974266378998
Q gi|254780975|r 159 RQAKALIGKRSIS-LEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGE 206 (224)
Q Consensus 159 ~~l~~~~~~~~~~-I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~ 206 (224)
++..+... .++. -.|=||=+..--......+.+-+-.||++|.+...
T Consensus 180 ~~~~~~~~-~g~~~~~vs~GgTpt~~~~~~~~~~tEl~~G~yvf~D~~~ 227 (345)
T cd07376 180 RAAAAAAE-RGLACPTVSGGGTPTYQLTAGDRAVTELRAGSYVFMDTGF 227 (345)
T ss_pred HHHHHHHH-CCCCCCEEECCCCCCCEEECCCCCCEEECCCEEEECCHHH
T ss_conf 99999986-4999888955788874103368873287463489642132
No 493
>PRK07534 methionine synthase I; Validated
Probab=44.02 E-value=25 Score=16.03 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=53.7
Q ss_pred HHHHCCCCCCEEEEECCCCCCHHH---HHHHHHHCCCE--EEEEEEC------CCCHHHHHHHHHHCCEE-EEEEEECCC
Q ss_conf 676404776079997066421589---99867764982--5998523------33447899886201402-899830677
Q gi|254780975|r 78 INIIADAGCDIITFHPESSPHIRR---SLRTIHAMGKK--TGVAINP------ETPVAILEDVIDEIDMI-LIMTVNPGF 145 (224)
Q Consensus 78 i~~~~~~g~d~i~~H~E~~~~~~~---~i~~i~~~g~k--~Giai~p------~T~~~~i~~~l~~~D~v-liM~V~PG~ 145 (224)
++.+.+.|+|.+.+ |+..++.+ .++.+++.+.- +.+++.+ +++.+.+...+..+... +..++|=+.
T Consensus 137 ~~~L~~~gvDlil~--ETm~~i~E~~aa~~a~~~~~~P~~~~~s~~~~g~~~~G~~~~~~~~~~~~~~~~~~avGvNC~~ 214 (335)
T PRK07534 137 AEGLKAGGADVLWV--ETISAPEEFRAAAEAAALAGMPWCGTMSFDTAGRTMMGLTPADLAGLVDKLPHPPLAFGANCGV 214 (335)
T ss_pred HHHHHHCCCCEEEH--HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 99987369989955--9987499999999998855998899999828997489999999999999758973002000578
Q ss_pred CCCCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCC--------HHHHHHHHHCCCCEEE
Q ss_conf 6533220135778998654----313865269815899--------8899999967998999
Q gi|254780975|r 146 GGQQLIESTIPKIRQAKAL----IGKRSISLEVDGGVT--------SRNIKSLVQAGADLLV 195 (224)
Q Consensus 146 ~Gq~f~~~~l~kI~~l~~~----~~~~~~~I~vDGGvn--------~~~i~~l~~~Gad~~V 195 (224)
+........+...+..... +++.++.-.+||... .+....+.+.||+++=
T Consensus 215 ~~~~~~~~~l~~~~~~~~~p~~~~pNaG~p~~~~~~~~~~~tpe~f~~~~~~w~~~Ga~IIG 276 (335)
T PRK07534 215 GASDLLRTVLGFAAQGPERPIIAKGNAGIPKYVDGHIHYDGTPELMAEYAVLARDAGARIIG 276 (335)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 88999999999998489971898789999875799404379999999999999987981998
No 494
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating; InterPro: IPR006113 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) , . Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved . The protein is a homodimer in which the monomers act independently : each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet . NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket . This model does not specify whether the cofactor is NADP only, NAD only, or both.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt.
Probab=43.31 E-value=26 Score=15.96 Aligned_cols=120 Identities=17% Similarity=0.219 Sum_probs=78.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHH--HHHHHHHHHHH
Q ss_conf 7999706642158999867764982599852333447899886201402899830677653322013--57789986543
Q gi|254780975|r 88 IITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIEST--IPKIRQAKALI 165 (224)
Q Consensus 88 ~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~--l~kI~~l~~~~ 165 (224)
.|++|=-+.+..++++ ++ -..|=.|.+.++++++...|+.-=.|++|- ..|.. + =.-|.+|.-++
T Consensus 24 ~V~VyNRt~~Ktd~fl---~~--~~~gk~i~g~~~ieeFV~~Le~PRKImLMV-kAG~p-------VdaD~~I~~L~P~L 90 (480)
T TIGR00873 24 TVAVYNRTPEKTDEFL---KE--RAKGKKIVGAYSIEEFVQSLERPRKIMLMV-KAGAP-------VDADAVINSLLPLL 90 (480)
T ss_pred CEEEEECCHHHHHHHH---HC--CCCCCCCCCCCCHHHHHHHCCCCCEEEEEE-ECCCC-------CCHHHHHHHHHHHC
T ss_conf 2799726847999998---60--378885334326799998506887288877-53885-------37789999964435
Q ss_pred HCCCCEEEEECCCC-----HHHHHHHHHCCCCEE---EEC---HHHHCCC----CHHHHHHHHHHHHHHHHH
Q ss_conf 13865269815899-----889999996799899---974---2663789----989999999999997862
Q gi|254780975|r 166 GKRSISLEVDGGVT-----SRNIKSLVQAGADLL---VVG---SSFFNQK----GEISYAKRLNDLKKSALA 222 (224)
Q Consensus 166 ~~~~~~I~vDGGvn-----~~~i~~l~~~Gad~~---V~G---saif~~~----d~~~~~~~l~~l~~~a~a 222 (224)
++ -+|-+|||=+ ....++|.+.|...+ |+| +|+++=. -..++++.+..+.++-+|
T Consensus 91 E~--GDiIIDGGNS~Y~DT~RR~~eL~~~Gi~FvG~GvSGGEeGAl~GPSiMPGG~~~Ay~~~~PIl~~IAA 160 (480)
T TIGR00873 91 EK--GDIIIDGGNSHYKDTERRYKELKAKGILFVGVGVSGGEEGALKGPSIMPGGSAEAYPLVAPILQKIAA 160 (480)
T ss_pred CC--CCEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 89--98887588788466578999998649816730132453021378877888798789999678876554
No 495
>PRK05660 coproporphyrinogen III oxidase; Provisional
Probab=43.07 E-value=26 Score=15.93 Aligned_cols=122 Identities=16% Similarity=0.216 Sum_probs=65.8
Q ss_pred HHHHHHCCCCCCEEEEECCCCC--------------CHHHHHHHHHHCCCE-EEEEEE---CCCCHHHHHHHHHH-----
Q ss_conf 3367640477607999706642--------------158999867764982-599852---33344789988620-----
Q gi|254780975|r 76 SHINIIADAGCDIITFHPESSP--------------HIRRSLRTIHAMGKK-TGVAIN---PETPVAILEDVIDE----- 132 (224)
Q Consensus 76 ~~i~~~~~~g~d~i~~H~E~~~--------------~~~~~i~~i~~~g~k-~Giai~---p~T~~~~i~~~l~~----- 132 (224)
..+..+.++|++++++=..+.+ +..+.++.+++.|.. +.+-+- |+..++.+..-+..
T Consensus 108 ~~l~~l~~~GvnRiSiGVQsf~~~~l~~lgR~h~~~~~~~ai~~~r~~gf~~iniDLiyGlP~Qt~~~~~~~l~~~~~l~ 187 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGAGLRSFNLDLMHGLPDQSLEEALDDLRQAIALN 187 (378)
T ss_pred HHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 89999998098759996143789999982799999999999999997699606542326899988999999999986449
Q ss_pred CCEEEE--EEEECCC--CCCCC-CC---HHHHHHHHHHHHHHCCCCE-EEE-----ECCCCHHHHHHHHHCCCCEEEEC-
Q ss_conf 140289--9830677--65332-20---1357789986543138652-698-----15899889999996799899974-
Q gi|254780975|r 133 IDMILI--MTVNPGF--GGQQL-IE---STIPKIRQAKALIGKRSIS-LEV-----DGGVTSRNIKSLVQAGADLLVVG- 197 (224)
Q Consensus 133 ~D~vli--M~V~PG~--~Gq~f-~~---~~l~kI~~l~~~~~~~~~~-I~v-----DGGvn~~~i~~l~~~Gad~~V~G- 197 (224)
.|.|-+ ++++||. ..++. .| ...+.-....+.+.+.++. .++ .|--...|..-. .+.|.+-.|
T Consensus 188 p~his~Y~L~~e~~T~~~~~~~~lp~~~~~~~my~~~~~~L~~~Gy~~yeisnFAk~g~~~~HN~~YW--~~~dylGiG~ 265 (378)
T PRK05660 188 PPHLSWYQLTIEPNTVFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNLNYW--RFGDYLGIGC 265 (378)
T ss_pred CCCEEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCC--CCCCEEEECC
T ss_conf 88057888886589737646766998589999999999999977998786127778870222011105--7998089815
Q ss_pred HH
Q ss_conf 26
Q gi|254780975|r 198 SS 199 (224)
Q Consensus 198 sa 199 (224)
||
T Consensus 266 gA 267 (378)
T PRK05660 266 GA 267 (378)
T ss_pred CC
T ss_conf 81
No 496
>pfam12617 LdpA_C Iron-Sulfur binding protein C terminal. This domain family is found in bacteria and eukaryotes, and is typically between 179 and 201 amino acids in length. The family is found in association with pfam00037. LdpA (light-dependent period) plays a role in controlling the redox state in cyanobacteria to modulate its. circadian clock. LdpA is a protein with Iron-Sulfur cluster-binding motifs.
Probab=42.87 E-value=26 Score=15.91 Aligned_cols=110 Identities=17% Similarity=0.259 Sum_probs=60.1
Q ss_pred HHCCCCCCEEEEECCCCC--CHHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHHH-------CCEEEEEEEE--CCCCC
Q ss_conf 640477607999706642--158999867764982-59985233344789988620-------1402899830--67765
Q gi|254780975|r 80 IIADAGCDIITFHPESSP--HIRRSLRTIHAMGKK-TGVAINPETPVAILEDVIDE-------IDMILIMTVN--PGFGG 147 (224)
Q Consensus 80 ~~~~~g~d~i~~H~E~~~--~~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~~-------~D~vliM~V~--PG~~G 147 (224)
.+.+.|+|-|-+|..... ...+..+.++..+.+ --+|+++.-.-+.+..|+.. ...-++--.+ | -||
T Consensus 2 ll~~~~~dAIEIHT~vgr~~~F~~lw~~l~~~~~~Lk~iaiSc~~~~~~l~~~L~~~~~~l~~~~~~lIWQ~DGRP-MSG 80 (182)
T pfam12617 2 LLLSLGPDAIEIHTQVGRLAAFERLWQALAPSVPQLKLLAISCPDEGEGLIEYLWQLYEILRPLPCRLIWQLDGRP-MSG 80 (182)
T ss_pred CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CCC
T ss_conf 4322699889871788854799999999874347621157656988279999999999997406998079548903-778
Q ss_pred CCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHCC
Q ss_conf 332201357789986543138-6526981589988999999679
Q gi|254780975|r 148 QQLIESTIPKIRQAKALIGKR-SISLEVDGGVTSRNIKSLVQAG 190 (224)
Q Consensus 148 q~f~~~~l~kI~~l~~~~~~~-~~~I~vDGGvn~~~i~~l~~~G 190 (224)
--=.-.+..-|+-..++.... ...++.-||-|..|+..+...|
T Consensus 81 Dig~gTt~~aV~l~~~v~~~~pPG~vQLAGGTN~~Tv~~Lk~~g 124 (182)
T pfam12617 81 DIGDGTTRAAVKLAQKVLSAKPPGPVQLAGGTNAHTVEKLKQLG 124 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCC
T ss_conf 87886099999999998740799717843676377899999716
No 497
>PRK05586 biotin carboxylase; Validated
Probab=42.70 E-value=26 Score=15.90 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=40.2
Q ss_pred EEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCC-----CHHHHHHHHHHCCEEEEEEEECC
Q ss_conf 8851203367640477607999706642158999867764982599852333-----44789988620140289983067
Q gi|254780975|r 70 MISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPET-----PVAILEDVIDEIDMILIMTVNPG 144 (224)
Q Consensus 70 Mv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T-----~~~~i~~~l~~~D~vliM~V~PG 144 (224)
+.+|| .+.+.+.++|...|--..|+....-+-+ ..|+.=.++|+-+-|++ +.+........+.|=+++----|
T Consensus 85 LSEna-~Fa~~~~~~Gi~fIGP~~~~i~~~GdK~-~ar~~a~~~gvPv~pg~~~~v~~~~ea~~~a~~iGyPv~lKAa~G 162 (447)
T PRK05586 85 LSENS-KFAKMCKECNIVFIGPDSETIELMGNKS-NAREIMKKAGVPVVPGSEGEIENEEEALKIAEEIGYPVMVKASAG 162 (447)
T ss_pred HHCCH-HHHHHHHHCCCEEECCCHHHHHHHCCHH-HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf 22389-9999999879879895999999853849-999999984997656868888999999999986298237630569
Q ss_pred CCCCCC
Q ss_conf 765332
Q gi|254780975|r 145 FGGQQL 150 (224)
Q Consensus 145 ~~Gq~f 150 (224)
-+|...
T Consensus 163 GGGrGm 168 (447)
T PRK05586 163 GGGRGI 168 (447)
T ss_pred CCCCEE
T ss_conf 997736
No 498
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=42.34 E-value=26 Score=15.86 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=4.8
Q ss_pred CCCCEEEEECCCC
Q ss_conf 7760799970664
Q gi|254780975|r 84 AGCDIITFHPESS 96 (224)
Q Consensus 84 ~g~d~i~~H~E~~ 96 (224)
+|...|..=.|..
T Consensus 103 agI~liV~ITEgI 115 (309)
T PTZ00187 103 AEIPLVVVITEGI 115 (309)
T ss_pred CCCCEEEEECCCC
T ss_conf 7998799933898
No 499
>TIGR02635 RhaI_grampos L-rhamnose isomerase; InterPro: IPR013457 The proteins in this entry are closely related to the L-rhamnose isomerases (IPR013451 from INTERPRO) found in Pseudomonas stutzeri and in a number of the Rhizobiales. They are encoded in similar genomic contexts, close to genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (IPR013454 from INTERPRO), sugar kinases, and sugar transporters..
Probab=42.27 E-value=15 Score=17.53 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCEECCCCC-C---CHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf 99999999999659989999734263458434-1---7899998641-25641685678851203367640477607999
Q gi|254780975|r 17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNIS-F---GADVIRSLRS-YSDSVFDCHLMISSIDSHINIIADAGCDIITF 91 (224)
Q Consensus 17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~-~---~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~ 91 (224)
.|+-+=++..++.|..-|-+=..||+==|... | -..+-+.|+. |..++=|--|.++. ||++.-. .
T Consensus 116 ~h~LeCvdIa~~tGSkdisLWLADGTnYPGQdD~R~Rk~RL~EsL~~vY~~l~~dmRlLiEY--KFFEPAf--------Y 185 (382)
T TIGR02635 116 DHLLECVDIAKKTGSKDISLWLADGTNYPGQDDIRKRKDRLEESLAEVYEHLGDDMRLLIEY--KFFEPAF--------Y 185 (382)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--ECCCCCC--------C
T ss_conf 99998999998608852562210578735887754478899888999985169887785322--0457534--------4
Q ss_pred ECCCCCCHHHHHHHHHHCCCEEEEEEE-----CCCCHHHHHHHH
Q ss_conf 706642158999867764982599852-----333447899886
Q gi|254780975|r 92 HPESSPHIRRSLRTIHAMGKKTGVAIN-----PETPVAILEDVI 130 (224)
Q Consensus 92 H~E~~~~~~~~i~~i~~~g~k~Giai~-----p~T~~~~i~~~l 130 (224)
|. =.+|.--.....+++|-|+-+.+. |+|.+|.|.-+|
T Consensus 186 ~T-D~pDWGtAY~~~~kLG~rA~VlVD~GHHa~GTNIE~IVA~L 228 (382)
T TIGR02635 186 HT-DIPDWGTAYALSKKLGDRALVLVDTGHHAQGTNIEFIVATL 228 (382)
T ss_pred CC-CCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 57-83335799999985489238986257798777489999988
No 500
>PRK08223 hypothetical protein; Validated
Probab=42.22 E-value=27 Score=15.85 Aligned_cols=29 Identities=10% Similarity=0.112 Sum_probs=12.1
Q ss_pred CCCEEEEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf 5641685678851203367640477607999
Q gi|254780975|r 61 SDSVFDCHLMISSIDSHINIIADAGCDIITF 91 (224)
Q Consensus 61 t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~ 91 (224)
+...+++|=---++++ ++.+.+ |+|.|.=
T Consensus 95 P~v~V~~~~~~lt~~N-~~~~l~-~~DvVvD 123 (287)
T PRK08223 95 PELEIRAFPEGIGKEN-LDTFLD-GVDVYVD 123 (287)
T ss_pred CCCEEEEECCCCCHHH-HHHHHH-CCCEEEE
T ss_conf 8987999587899899-999986-7999997
Done!