HHsearch alignment for GI: 254780975 and conserved domain: pfam01645
>pfam01645 Glu_synthase Conserved region in glutamate synthase. This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.
Probab=92.76 E-value=0.86 Score=25.38 Aligned_cols=118 Identities=18% Similarity=0.297 Sum_probs=72.7
Q ss_pred CCCCEEEEE--CC--CCCCHHHHHHHHHHC--CCEEEEEEECCCCHHHHHHHHH--HCCEEEEEEEECCCCC--CCCCCH
Q ss_conf 776079997--06--642158999867764--9825998523334478998862--0140289983067765--332201
Q gi|254780975|r 84 AGCDIITFH--PE--SSPHIRRSLRTIHAM--GKKTGVAINPETPVAILEDVID--EIDMILIMTVNPGFGG--QQLIES 153 (224)
Q Consensus 84 ~g~d~i~~H--~E--~~~~~~~~i~~i~~~--g~k~Giai~p~T~~~~i~~~l~--~~D~vliM~V~PG~~G--q~f~~~ 153 (224)
T Consensus 170 ~G~d~iSP~~h~di~s~edL~~~I~~Lr~~~~~~PVgvKl~~~~~~~~ia~~~aka~~D~I~IdG~eGGTGAaP~~~~d~ 249 (367)
T pfam01645 170 PGVGLISPPPHHDIYSIEDLAQLIYDLKEINPKAPISVKLVSGHGVGTIAAGVAKAGADIILIDGHDGGTGASPKTSIKH 249 (367)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHH
T ss_conf 99876786334788999999999999984178994599981477689999987536788899717898677554889974
Q ss_pred ----HHHHHHHHHHHHHC----CCCEEEEECCCC-HHHHHHHHHCCCCEEEECHH-HH
Q ss_conf ----35778998654313----865269815899-88999999679989997426-63
Q gi|254780975|r 154 ----TIPKIRQAKALIGK----RSISLEVDGGVT-SRNIKSLVQAGADLLVVGSS-FF 201 (224)
Q Consensus 154 ----~l~kI~~l~~~~~~----~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsa-if 201 (224)
T Consensus 250 ~GlP~~~~L~~~~~~L~~~glR~~V~liasGgl~t~~Dv~ka~aLGAD~v~~gt~~m~ 307 (367)
T pfam01645 250 AGLPWELALAEVHQTLVENGLRDRVSLIADGGLRTGADVAKAAALGADAVYIGTAALI 307 (367)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 4246999999999999870675764999769978889999999856535423479999