HHsearch alignment for GI: 254780975 and conserved domain: pfam03060

>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.

Probab=98.08  E-value=0.00024  Score=48.10  Aligned_cols=124  Identities=16%  Similarity=0.271  Sum_probs=92.0

Q ss_pred             CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECC-CCCCCCC
Q ss_conf             2033676404776079997066421589998677649825998523334478998862-0140289983067-7653322
Q gi|254780975|r   74 IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPG-FGGQQLI  151 (224)
Q Consensus        74 P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG-~~Gq~f~  151 (224)
T Consensus       103 ~~~~~~~~~~~~~~~v~~~~G~p~--~~~v~~~~~~G~~v~~~v---~s~~~A~~a~~~G~D~iV~qG~eAGGH~G~~~~  177 (330)
T pfam03060       103 YGDDDDSLKDAKPKVVSFGFGLPP--EDVIERLKESGTKVIPTV---SSAKEARKAEAAGADAVVAQGPEAGGHRGTEVG  177 (330)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCH--HHHHHHHHHCCCEEEEEC---CCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf             799999999749999998998982--799999998799899981---899999999981999899966766777888777


Q ss_pred             CHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             013577899865431386526981589-988999999679989997426637899
Q gi|254780975|r  152 ESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       152 ~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
T Consensus       178 ~~~~~L~~~v~~~~---~iPvIaAGGI~dg~~iaaalalGA~gV~mGTrFlat~E  229 (330)
T pfam03060       178 TGTFLLVPTVVDAV---DIPVIAAGGIADGRGIAAALALGAEGVQIGTRFLATKE  229 (330)
T ss_pred             CCHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEEECCEEEECCC
T ss_conf             30777789999871---69778526628999999999679989997130011577