HHsearch alignment for GI: 254780975 and conserved domain: smart00729
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=92.36 E-value=0.78 Score=25.65 Aligned_cols=105 Identities=14% Similarity=0.245 Sum_probs=57.8
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCEEEE-E--EECCEE-CCCCCCCHHHHHHHHHCCCCEEEEEEEEE-E----CCHHHHHH
Q ss_conf 63258899999999999659989999-7--342634-58434178999986412564168567885-1----20336764
Q gi|254780975|r 11 ILAADFSRLGEEISNITKAGAKQIHF-D--VMDGCF-VPNISFGADVIRSLRSYSDSVFDCHLMIS-S----IDSHINII 81 (224)
Q Consensus 11 il~~d~~~l~~~i~~l~~~~~d~iHi-D--ImDg~f-vpn~~~~~~~i~~i~~~t~~~~dvHLMv~-~----P~~~i~~~ 81 (224)
T Consensus 27 ~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~e~l~~l 106 (216)
T smart00729 27 LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEAL 106 (216)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHH
T ss_conf 45759999999999999708976530011002468988899999999999998514356269999706021589999999
Q ss_pred CCCCCCEEEEECCCCC--------------CHHHHHHHHHHCC-CEEEE
Q ss_conf 0477607999706642--------------1589998677649-82599
Q gi|254780975|r 82 ADAGCDIITFHPESSP--------------HIRRSLRTIHAMG-KKTGV 115 (224)
Q Consensus 82 ~~~g~d~i~~H~E~~~--------------~~~~~i~~i~~~g-~k~Gi 115 (224)
T Consensus 107 ~~~g~~~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~g~~~~~~ 155 (216)
T smart00729 107 KEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVST 155 (216)
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9849986666735507899987179999999999999999858936877