HHsearch alignment for GI: 254780975 and conserved domain: smart00812
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=93.72 E-value=0.61 Score=26.32 Aligned_cols=118 Identities=14% Similarity=0.191 Sum_probs=66.7
Q ss_pred EEECCHHHHHHCCCCCCEEEEECCCC---------------------CC-HHHHHHHHHHCCCEEEEEEECCCCHHHHHH
Q ss_conf 85120336764047760799970664---------------------21-589998677649825998523334478998
Q gi|254780975|r 71 ISSIDSHINIIADAGCDIITFHPESS---------------------PH-IRRSLRTIHAMGKKTGVAINPETPVAILED 128 (224)
Q Consensus 71 v~~P~~~i~~~~~~g~d~i~~H~E~~---------------------~~-~~~~i~~i~~~g~k~Giai~p~T~~~~i~~ 128 (224)
T Consensus 80 ~Fda~~Wa~lak~AGaKY~V~TaKHHDGF~lwdS~~s~~n~~~~gpkrDiv~el~~A~rk~Glk~G~YyS~---~DW~~p 156 (384)
T smart00812 80 KFDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---FDWFNP 156 (384)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECH---HHHCCC
T ss_conf 28999999999984995477521304774146788999866567887667999999998769769998137---773787
Q ss_pred HHHHCCEEEEEEEECC--CCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCC--------HHHHHHHHHCCCC---EE
Q ss_conf 8620140289983067--765332201357789986543138652-69815899--------8899999967998---99
Q gi|254780975|r 129 VIDEIDMILIMTVNPG--FGGQQLIESTIPKIRQAKALIGKRSIS-LEVDGGVT--------SRNIKSLVQAGAD---LL 194 (224)
Q Consensus 129 ~l~~~D~vliM~V~PG--~~Gq~f~~~~l~kI~~l~~~~~~~~~~-I~vDGGvn--------~~~i~~l~~~Gad---~~ 194 (224)
T Consensus 157 ~y~~~~~~---~~~~~~~~~~~~y~~~~~~Ql~---ELi~~YgpdilWfD~~~~~~~~~~~~~~l~~~~~~~~p~~~~~v 230 (384)
T smart00812 157 LYAGPTSS---DEDPDNWPRFQEFVDDWLPQLR---ELVTRYKPDLLWFDGGWEAPDDYWRSKEFLAWLYNLSPVKDTVV 230 (384)
T ss_pred CCCCCCCC---CCCCCCCCCHHHHHHHHHHHHH---HHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 56675654---4443237218999999999999---99973488559970897886121239999999998499987699
Q ss_pred EEC
Q ss_conf 974
Q gi|254780975|r 195 VVG 197 (224)
Q Consensus 195 V~G 197 (224)
T Consensus 231 vn~ 233 (384)
T smart00812 231 VND 233 (384)
T ss_pred EEC
T ss_conf 978