RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780975|ref|YP_003065388.1| D-ribulose-5 phosphate
3-epimerase protein [Candidatus Liberibacter asiaticus str. psy62]
(224 letters)
>gnl|CDD|180145 PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated.
Length = 220
Score = 279 bits (717), Expect = 3e-76
Identities = 100/219 (45%), Positives = 142/219 (64%), Gaps = 5/219 (2%)
Query: 4 SIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDS 63
+ I PSIL+ADF+RLGEE+ + AGA IH DVMDG FVPN++ G V+ ++R +
Sbjct: 3 MVLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKL 62
Query: 64 VFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPV 123
D HLM+ + D ++ A AG DIITFH E+S HI R L+ I + G K G+ +NP TP+
Sbjct: 63 PLDVHLMVENPDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPL 122
Query: 124 AILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKR--SISLEVDGGVTSR 181
LEDV+D +D++L+M+VNPGFGGQ+ I + KIR+ + LI +R I +EVDGG+ +
Sbjct: 123 EPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINAD 182
Query: 182 NIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSA 220
NIK +AGAD+ V GS+ F Y + ++ L+
Sbjct: 183 NIKECAEAGADVFVAGSAVFGAP---DYKEAIDSLRAEL 218
>gnl|CDD|130231 TIGR01163, rpe, ribulose-phosphate 3-epimerase. This family
consists of Ribulose-phosphate 3-epimerase, also known
as pentose-5-phosphate 3-epimerase (PPE). PPE converts
D-ribulose 5-phosphate into D-xylulose 5-phosphate in
Calvin's reductive pentose phosphate cycle. It has been
found in a wide range of bacteria, archebacteria, fungi
and plants.
Length = 210
Score = 248 bits (636), Expect = 8e-67
Identities = 102/201 (50%), Positives = 139/201 (69%), Gaps = 2/201 (0%)
Query: 7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD 66
I PSIL+ADF+RLGEE+ + +AGA IH DVMDG FVPN++FG V+ +LR Y+D D
Sbjct: 1 IAPSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPID 60
Query: 67 CHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAIL 126
HLM+ + D +I A+AG DIIT HPE+S HI R L+ I +G K G+ +NP TP+ L
Sbjct: 61 VHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFL 120
Query: 127 EDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALI--GKRSISLEVDGGVTSRNIK 184
E V+ ++D++L+M+VNPGFGGQ+ I T+ KIR+ + +I SI +EVDGGV N +
Sbjct: 121 EYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNAR 180
Query: 185 SLVQAGADLLVVGSSFFNQKG 205
L +AGAD+LV GS+ F
Sbjct: 181 ELAEAGADILVAGSAIFGADD 201
>gnl|CDD|177968 PLN02334, PLN02334, ribulose-phosphate 3-epimerase.
Length = 229
Score = 236 bits (605), Expect = 3e-63
Identities = 91/223 (40%), Positives = 135/223 (60%), Gaps = 9/223 (4%)
Query: 1 MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY 60
I PSIL+ADF+ L EE + AGA +H DVMDG FVPN++ G V+++LR +
Sbjct: 4 SKNDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKH 63
Query: 61 SDSVFDCHLMISSIDSHINIIADAGCDIITFHPE--SSPHIRRSLRTIHAMGKKTGVAIN 118
+D+ DCHLM+++ + ++ A AG I TFH E S+ H+ R ++ I + G K GV +N
Sbjct: 64 TDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLN 123
Query: 119 PETPVAILEDVID--EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDG 176
P TPV +E V++ +DM+L+M+V PGFGGQ I S + K+R + + I EVDG
Sbjct: 124 PGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDI--EVDG 181
Query: 177 GVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKS 219
GV I +AGA+++V GS+ F YA+ ++ L+ S
Sbjct: 182 GVGPSTIDKAAEAGANVIVAGSAVFGAP---DYAEVISGLRAS 221
>gnl|CDD|181575 PRK08883, PRK08883, ribulose-phosphate 3-epimerase; Provisional.
Length = 220
Score = 203 bits (517), Expect = 4e-53
Identities = 95/200 (47%), Positives = 136/200 (68%), Gaps = 3/200 (1%)
Query: 7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSV-F 65
I PSIL+ADF+RLGE++ + AGA +HFDVMD +VPN++FGA + ++LR Y +
Sbjct: 2 IAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPI 61
Query: 66 DCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAI 125
D HLM+ +D I A AG +ITFH E+S H+ R+L+ I G + GV +NP TP+
Sbjct: 62 DVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHH 121
Query: 126 LEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGK--RSISLEVDGGVTSRNI 183
LE ++D++D+IL+M+VNPGFGGQ I T+ K+R + +I + R I LE+DGGV NI
Sbjct: 122 LEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNI 181
Query: 184 KSLVQAGADLLVVGSSFFNQ 203
+ + +AGAD+ V GS+ F Q
Sbjct: 182 REIAEAGADMFVAGSAIFGQ 201
>gnl|CDD|136958 PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional.
Length = 223
Score = 199 bits (507), Expect = 5e-52
Identities = 96/207 (46%), Positives = 138/207 (66%), Gaps = 4/207 (1%)
Query: 1 MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY 60
M P+ I PSIL+ADF+RLGEE+ N+ KAGA +HFDVMD +VPN++ G V ++LR +
Sbjct: 1 MQPTA-IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKH 59
Query: 61 SDSV-FDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINP 119
+ D HLM+ +D + ADAG I+FHPE+S H+ R+++ I + G + G+ +NP
Sbjct: 60 GITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNP 119
Query: 120 ETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGK--RSISLEVDGG 177
TPV IL+ V+ E+D++L+M+VNPGFGGQ I S + K+R + I + I LE+DGG
Sbjct: 120 ATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGG 179
Query: 178 VTSRNIKSLVQAGADLLVVGSSFFNQK 204
V + NI ++ AGAD V GS+ FN
Sbjct: 180 VKADNIGAIAAAGADTFVAGSAIFNAP 206
>gnl|CDD|185495 PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epimerase;
Provisional.
Length = 228
Score = 198 bits (505), Expect = 1e-51
Identities = 90/202 (44%), Positives = 124/202 (61%), Gaps = 6/202 (2%)
Query: 7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVF- 65
I PSILAADFS+L +E ++ GA +H DVMDG FVPN+SFG V++SLR + + F
Sbjct: 9 IAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFL 68
Query: 66 DCHLMISSIDSHINIIADAGCDIITFHPES-SPHIRRSLRTIHAMGKKTGVAINPETPVA 124
DCHLM+S+ + ++ A AG TFH E+ + R I G K GVAI P+TPV
Sbjct: 69 DCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVE 128
Query: 125 ILEDVID--EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRN 182
+L +ID +DM+L+MTV PGFGGQ + +PK+R+ + +I +VDGG+
Sbjct: 129 VLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNI--QVDGGINLET 186
Query: 183 IKSLVQAGADLLVVGSSFFNQK 204
I AGA+++V GSS F K
Sbjct: 187 IDIAADAGANVIVAGSSIFKAK 208
>gnl|CDD|182048 PRK09722, PRK09722, allulose-6-phosphate 3-epimerase; Provisional.
Length = 229
Score = 175 bits (446), Expect = 7e-45
Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 5/211 (2%)
Query: 4 SIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDS 63
++I PS++ D + E+I + A H D+MDG FVPN++ + ++ +
Sbjct: 2 RMKISPSLMCMDLLKFKEQIEFLNSK-ADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASK 60
Query: 64 VFDCHLMISSIDSHINIIADAGCDIITFHPES-SPHIRRSLRTIHAMGKKTGVAINPETP 122
D HLM++ +I+ +ADAG D IT HPE+ + R + I G K G+ +NPETP
Sbjct: 61 PLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETP 120
Query: 123 VAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS--LEVDGGVTS 180
V ++ I +D I +MTV+PGF GQ I + KI + KAL + + +EVDG
Sbjct: 121 VESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQ 180
Query: 181 RNIKSLVQAGADLLVVGSS-FFNQKGEISYA 210
+ + L++AGAD+ +VG+S FN +I A
Sbjct: 181 KTYEKLMEAGADVFIVGTSGLFNLDEDIDEA 211
>gnl|CDD|169179 PRK08005, PRK08005, epimerase; Validated.
Length = 210
Score = 100 bits (249), Expect = 4e-22
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 2/194 (1%)
Query: 9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCH 68
PS+ +AD R E ++ + A +H D+ D F+ NI+FG I+++ + H
Sbjct: 5 PSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFH 64
Query: 69 LMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILED 128
LM+SS + +A I H ES + L I A+G K G+A+NP TP+
Sbjct: 65 LMVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRY 124
Query: 129 VIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQ 188
+ ++D ++IMT P GQQ I + K+ Q++ + DGG+T R + L
Sbjct: 125 LALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHF--PAAECWADGGITLRAARLLAA 182
Query: 189 AGADLLVVGSSFFN 202
AGA LV+G + F
Sbjct: 183 AGAQHLVIGRALFT 196
>gnl|CDD|169215 PRK08091, PRK08091, ribulose-phosphate 3-epimerase; Validated.
Length = 228
Score = 85.7 bits (212), Expect = 8e-18
Identities = 56/213 (26%), Positives = 105/213 (49%), Gaps = 9/213 (4%)
Query: 11 ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLM 70
ILA+++ + E ++ +++ + +HFD+ DG F P + GA I+ ++ D HLM
Sbjct: 19 ILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPTHC--FKDVHLM 76
Query: 71 ISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTI--HAMGKKTGVAINPETPVAILED 128
+ AG DI+T E + + ++ + G+ + PETP+++LE
Sbjct: 77 VRDQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEP 136
Query: 129 VIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS--LEVDGGVTSRNIKSL 186
+D+ID+I I+T++P G + + + ++ Q + +G R + + +DG +T L
Sbjct: 137 YLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYL 196
Query: 187 VQAGADLLVVGSSFFNQKGEISYAKRLNDLKKS 219
Q D +V GS+ F+Q L + K S
Sbjct: 197 KQHQIDWVVSGSALFSQG---ELKTTLKEWKSS 226
>gnl|CDD|172549 PRK14057, PRK14057, epimerase; Provisional.
Length = 254
Score = 74.3 bits (182), Expect = 2e-14
Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 13/202 (6%)
Query: 11 ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLM 70
ILA + L + + +H D+MDG F P + G + L + D HLM
Sbjct: 26 ILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQ--TFIKDVHLM 83
Query: 71 ISSIDSHINIIADAGCDIITFHPESSPHIRRSL-----RTIHAMGKKT----GVAINPET 121
++ + AG IT E H+ +L +T+ +G + G+++ P T
Sbjct: 84 VADQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT 143
Query: 122 PVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS--LEVDGGVT 179
P+ ++ ++ ++++I ++ VNPG+G + ++ Q L+G + + +DG +T
Sbjct: 144 PLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT 203
Query: 180 SRNIKSLVQAGADLLVVGSSFF 201
+ SL+ G D +V GS+ F
Sbjct: 204 QDQLPSLIAQGIDRVVSGSALF 225
>gnl|CDD|181612 PRK09016, PRK09016, quinolinate phosphoribosyltransferase;
Validated.
Length = 296
Score = 34.7 bits (80), Expect = 0.021
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 113 TGVAINPETPVAILEDVIDEIDMIL------IMTVNPGFGGQQLIESTIPKIRQAKALIG 166
++P+ PV + + +DE+D L IM N F T ++R+A
Sbjct: 201 KAFWLHPDVPVEVEVENLDELDQALKAGADIIMLDN--F--------TTEQMREAVKRTN 250
Query: 167 KRSISLEVDGGVTSRNIKSLVQAGADLLVVGS 198
R+ LEV G VT ++ + G D + VG+
Sbjct: 251 GRA-LLEVSGNVTLETLREFAETGVDFISVGA 281
>gnl|CDD|178065 PLN02446, PLN02446,
(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase.
Length = 262
Score = 33.5 bits (77), Expect = 0.048
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 172 LEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216
L+V GGV S N S + AGA ++V S F G+I +RL DL
Sbjct: 86 LQVGGGVNSENAMSYLDAGASHVIVTSYVFRD-GQIDL-ERLKDL 128
>gnl|CDD|132172 TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase. at the cost
of also yielding formaldehyde. These latter species tend
usually have a formaldehyde-activating enzyme to attach
formaldehyde to the C1 carrier tetrahydromethanopterin.
In these species, the enzyme is viewed as a lyase rather
than a synthase and is called D-arabino 3-hexulose
6-phosphate formaldehyde lyase. Note that there is some
overlap in specificity with the Escherichia coli enzyme
3-keto-L-gulonate 6-phosphate decarboxylase.
Length = 206
Score = 32.7 bits (75), Expect = 0.075
Identities = 29/143 (20%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 80 IIADAGCDIIT---FHPESSPHIRRSLRTIHAMGKKTGV-AINPETPVAILEDVIDE--I 133
AG DI+T +++ I+ +++ GK+ V IN + V ++ + E
Sbjct: 71 QAFAAGADIVTVLGVADDAT--IKGAVKAAKKHGKEVQVDLINVKDKVKRAKE-LKELGA 127
Query: 134 DMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADL 193
D I + T G Q ++ ++ L+ + ++ V GG+ I +++ G D+
Sbjct: 128 DYIGVHT---GLDEQAKGQNPFEDLQTILKLVKEARVA--VAGGINLDTIPDVIKLGPDI 182
Query: 194 LVVGSSFFNQKGEISYAKRLNDL 216
++VG + A+++ L
Sbjct: 183 VIVGGAITKAADPAEAARQIRKL 205
>gnl|CDD|183964 PRK13307, PRK13307, bifunctional formaldehyde-activating
enzyme/3-hexulose-6-phosphate synthase; Provisional.
Length = 391
Score = 32.7 bits (75), Expect = 0.083
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 158 IRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204
I++ K GK I + V GGV N++ ++AGAD+LVVG + K
Sbjct: 321 IKEIKKAGGK--ILVAVAGGVRVENVEEALKAGADILVVGRAITKSK 365
>gnl|CDD|178817 PRK00043, thiE, thiamine-phosphate pyrophosphorylase; Reviewed.
Length = 212
Score = 32.1 bits (74), Expect = 0.13
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 155 IPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVV 196
+ +R+ +A +G I + GG+T N +++AGAD + V
Sbjct: 148 LEGLREIRAAVGD--IPIVAIGGITPENAPEVLEAGADGVAV 187
>gnl|CDD|162719 TIGR02129, hisA_euk, phosphoribosylformimino-5-aminoimidazole
carboxamide ribotide isomerase, eukaryotic type. This
enzyme acts in the biosynthesis of histidine and has
been characterized in S. cerevisiae and Arabidopsis
where it complements the E. coli HisA gene. In
eukaryotes the gene is known as HIS6. In bacteria, this
gene is found in Fibrobacter succinogenes, presumably
due to lateral gene transfer from plants in the rumen
gut.
Length = 253
Score = 30.9 bits (70), Expect = 0.27
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 172 LEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK 218
L+V GG+ N + + GA ++V S F KG+ KRL ++
Sbjct: 79 LQVGGGINDTNAQEWLDEGASHVIVTSWLFT-KGKFDL-KRLKEIVS 123
>gnl|CDD|180230 PRK05742, PRK05742, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 277
Score = 29.8 bits (67), Expect = 0.61
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 117 INPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDG 176
I P PV + + +DE+ L G L E ++ +R+A L R+ LE G
Sbjct: 186 IAPGKPVEVEVESLDELRQAL----AAGADIVMLDELSLDDMREAVRLTAGRA-KLEASG 240
Query: 177 GVTSRNIKSLVQAGADLLVVGS 198
G+ ++ + + G D + +G+
Sbjct: 241 GINESTLRVIAETGVDYISIGA 262
>gnl|CDD|180783 PRK06978, PRK06978, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 294
Score = 29.3 bits (66), Expect = 0.87
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 116 AINPETPVAILEDVIDEIDMILIMTVNPGFGGQQ-LIES-TIPKIRQAKALIGKRSISLE 173
A+N PV I + + +++ L G Q L+++ T+ +R+A + R++ LE
Sbjct: 201 ALNAGVPVQIEVETLAQLETAL------AHGAQSVLLDNFTLDMMREAVRVTAGRAV-LE 253
Query: 174 VDGGVTSRNIKSLVQAGADLLVVGS 198
V GGV +++ + G D + +G+
Sbjct: 254 VSGGVNFDTVRAFAETGVDRISIGA 278
>gnl|CDD|184165 PRK13585, PRK13585,
1-(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase; Provisional.
Length = 241
Score = 29.1 bits (66), Expect = 1.0
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 162 KALIGKRSISLEVDGGVTSRN-IKSLVQAGADLLVVGSSFFNQKGEI 207
K L+ I + GGVT+ + +++L +AGA +VVGS+ + KG+
Sbjct: 186 KELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALY--KGKF 230
>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein. This
model represents a family of proteins, often annotated
as a putative IMP dehydrogenase, related to IMP
dehydrogenase and GMP reductase and restricted to the
high GC Gram-positive bacteria. All species in which a
member is found so far (Corynebacterium glutamicum,
Mycobacterium tuberculosis, Streptomyces coelicolor,
etc.) also have IMP dehydrogenase as described by
TIGRFAMs entry TIGR01302.
Length = 475
Score = 28.7 bits (64), Expect = 1.4
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 174 VDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216
++G V + K+L+ AG D+LV+ ++ +Q IS K + L
Sbjct: 222 INGDVGGKA-KALLDAGVDVLVIDTAHGHQVKMISAIKAVRAL 263
>gnl|CDD|162257 TIGR01219, Pmev_kin_ERG8, phosphomevalonate kinase, ERG8-type,
eukaryotic branch. This enzyme is part of the
mevalonate pathway, one of two alternative pathways for
the biosynthesis of IPP. In an example of nonorthologous
gene displacement, two different types of
phosphomevalonate kinase are found - the animal type and
this ERG8 type. This model represents plant and fungal
forms of the ERG8 type of phosphomevalonate kinase.
Length = 454
Score = 28.4 bits (63), Expect = 1.4
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 99 IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGG 147
IRR +R + ++ V I PE+ +L+ ++ +L+ V PG GG
Sbjct: 364 IRRLMRQ---ITEEASVDIEPESQTQLLDS-TMSLEGVLLAGV-PGAGG 407
>gnl|CDD|181086 PRK07695, PRK07695, transcriptional regulator TenI; Provisional.
Length = 201
Score = 28.4 bits (64), Expect = 1.5
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 167 KRSISLEVD--GGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK 218
R++S+ V GG+T N + ++ AG + V S F+ S AKR + K
Sbjct: 145 ARALSIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIK 198
>gnl|CDD|148166 pfam06398, Pex24p, Integral peroxisomal membrane peroxin.
Peroxisomes play diverse roles in the cell,
compartmentalising many activities related to lipid
metabolism and functioning in the decomposition of toxic
hydrogen peroxide. Sequence similarity was identified
between two hypothetical proteins and the peroxin
integral membrane protein Pex24p.
Length = 355
Score = 28.1 bits (63), Expect = 1.7
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 80 IIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINP--ETPVAILEDVI 130
I G I+T+HP S IRR L + G +A ET + LE
Sbjct: 171 IFLILGAFILTYHPSWSRVIRRLLFYL--TGLDFSLASPLKVETLIKALESKE 221
>gnl|CDD|178537 PLN02951, PLN02951, Molybderin biosynthesis protein CNX2.
Length = 373
Score = 28.2 bits (63), Expect = 2.0
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 146 GGQQLIESTIPKI-RQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLL 194
GG+ + I I Q +L G +++++ +G SR + L +AG L
Sbjct: 114 GGEPTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTSL 163
>gnl|CDD|164907 PHA02324, PHA02324, hypothetical protein.
Length = 47
Score = 27.7 bits (61), Expect = 2.4
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 8/44 (18%)
Query: 139 MTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRN 182
P G + IES K RQ + K S TSRN
Sbjct: 1 AAKKPSLSGGKQIESKPKKTRQGQGKNTKYS--------ATSRN 36
>gnl|CDD|162293 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase.
This model describes a rather tightly conserved cluster
of IMP dehydrogenase sequences, many of which are
characterized. The model excludes two related families
of proteins proposed also to be IMP dehydrogenases, but
without characterized members. These are related
families are the subject of separate models.
Length = 450
Score = 27.7 bits (62), Expect = 2.6
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 18/108 (16%)
Query: 92 HPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLI 151
P +S L +G G + L +D+I+I + + G +
Sbjct: 202 FPHASKDENGRLI----VGAAVGTREFDKERAEALVKA--GVDVIVIDSSH---GHSIYV 252
Query: 152 ESTIPKIRQAKALIGKRSISLEVDGG--VTSRNIKSLVQAGADLLVVG 197
+I +I+ K L++ G T+ K+L+ AGAD L VG
Sbjct: 253 IDSIKEIK-------KTYPDLDIIAGNVATAEQAKALIDAGADGLRVG 293
>gnl|CDD|130401 TIGR01334, modD, putative molybdenum utilization protein ModD. The
gene modD for a member of this family is found with
molybdenum transport genes modABC in Rhodobacter
capsulatus. However, disruption of modD causes only a
4-fold (rather than 500-fold for modA, modB, modC)
change in the external molybdenum concentration required
to suppress an alternative nitrogenase. ModD proteins
are highly similar to nicotinate-nucleotide
pyrophosphorylase (also called quinolinate
phosphoribosyltransferase). The function unknown.
Length = 277
Score = 27.6 bits (61), Expect = 2.7
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 170 ISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEI 207
+L GG+ NI ++AG DL + + ++ +I
Sbjct: 236 PTLAAAGGINPENIADYIEAGIDLFITSAPYYAAPCDI 273
>gnl|CDD|181408 PRK08385, PRK08385, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 278
Score = 27.4 bits (61), Expect = 3.5
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 14/83 (16%)
Query: 120 ETPVAILEDVID----EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRS-ISLEV 174
E V LED + D+I++ + P I I +++ G R + +EV
Sbjct: 186 EVEVESLEDALKAAKAGADIIMLDNMTPE-----EIREVIEALKRE----GLRERVKIEV 236
Query: 175 DGGVTSRNIKSLVQAGADLLVVG 197
GG+T NI+ + D++ +G
Sbjct: 237 SGGITPENIEEYAKLDVDVISLG 259
>gnl|CDD|161661 TIGR00007, TIGR00007, phosphoribosylformimino-5-aminoimidazole
carboxamide ribotide isomerase. Examples of this enzyme
in Actinobacteria have been found to be bifunctional,
also possessing phosphoribosylanthranilate isomerase
activity ; the trusted cutoff here has now been raised
to 275.0 to exclude the bifunctional group, now
represented by model TIGR01919. HisA from Lactococcus
lactis was reported to be inactive (MEDLINE:93322317).
Length = 230
Score = 27.2 bits (61), Expect = 3.6
Identities = 10/64 (15%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 162 KALIGKRSISLEVDGGVTSRN-IKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSA 220
K ++ + + ++V GG+ S ++ L+ G D +++G++ + + ++
Sbjct: 65 KKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIV 124
Query: 221 LAID 224
+++D
Sbjct: 125 VSLD 128
>gnl|CDD|183866 PRK13125, trpA, tryptophan synthase subunit alpha; Provisional.
Length = 244
Score = 26.9 bits (60), Expect = 4.1
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 151 IESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSF 200
+E I ++R L+G + L V G+ S + + + AGAD +VVG++F
Sbjct: 172 VERNIKRVRN---LVG--NKYLVVGFGLDSPEDARDALSAGADGVVVGTAF 217
>gnl|CDD|185550 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase;
Provisional.
Length = 495
Score = 26.9 bits (60), Expect = 4.3
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 171 SLEVDGG--VTSRNIKSLVQAGADLLVVG 197
+++ G VT+ K+L+ AGAD L +G
Sbjct: 282 HVDIIAGNVVTADQAKNLIDAGADGLRIG 310
Score = 26.1 bits (58), Expect = 8.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 184 KSLVQAGADLLVVGSSFFNQKGEISYAKRL 213
+L++AG D+LVV SS N +I K+L
Sbjct: 247 AALIEAGVDVLVVDSSQGNSIYQIDMIKKL 276
>gnl|CDD|180799 PRK07028, PRK07028, bifunctional hexulose-6-phosphate
synthase/ribonuclease regulator; Validated.
Length = 430
Score = 26.5 bits (59), Expect = 5.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 162 KALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSS 199
K + + SI + V GG+ + V AGAD+++VG +
Sbjct: 155 KEVSEEVSIPIAVAGGLDAETAAKAVAAGADIVIVGGN 192
>gnl|CDD|177913 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase.
Length = 505
Score = 26.6 bits (59), Expect = 5.6
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 172 LEVDGG--VTSRNIKSLVQAGADLLVVG 197
L+V GG VT ++L+QAG D L VG
Sbjct: 290 LDVIGGNVVTMYQAQNLIQAGVDGLRVG 317
>gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed.
Length = 389
Score = 26.4 bits (59), Expect = 5.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 114 GVAINPETPVAIL 126
GV ++PET VAIL
Sbjct: 88 GVTLDPETEVAIL 100
>gnl|CDD|163008 TIGR02768, TraA_Ti, Ti-type conjugative transfer relaxase TraA.
This protein contains domains distinctive of a single
strand exonuclease (N-terminus, MobA/MobL, pfam03389) as
well as a helicase domain (central region, homologous to
the corresponding region of the F-type relaxase TraI,
TIGR02760). This protein likely fills the same role as
TraI(F), nicking (at the oriT site) and unwinding the
coiled plasmid prior to conjugative transfer.
Length = 744
Score = 26.3 bits (58), Expect = 6.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 163 ALIGKRSISLEVDGGVTSRNIKSLVQA---GADLL 194
AL GK + L+ + G+ SR + SL A G DLL
Sbjct: 403 ALSGKAAEGLQAESGIESRTLASLEYAWANGRDLL 437
>gnl|CDD|180420 PRK06136, PRK06136, uroporphyrin-III C-methyltransferase; Reviewed.
Length = 249
Score = 26.3 bits (59), Expect = 6.4
Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 42/132 (31%)
Query: 16 FSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG----ADVIRSL--RSYSDSV--FDC 67
F R GEE+ + AG I ++V VP I+ A L R + SV
Sbjct: 94 FGRGGEELEALEAAG---IPYEV-----VPGITAAIAAAAYAGIPLTHRGVARSVTFVTG 145
Query: 68 HLMISSIDSHINIIADA-GCDIITFHPESSPHIRRSLRTIHAMGKKTGVAI--------- 117
H ++ +N A A G D + + MG + I
Sbjct: 146 HEAAGKLEPEVNWSALADGADTLVIY----------------MGVRNLPYIAAQLLAAGR 189
Query: 118 NPETPVAILEDV 129
P+TPVAI+E+
Sbjct: 190 APDTPVAIIENG 201
>gnl|CDD|184505 PRK14099, PRK14099, glycogen synthase; Provisional.
Length = 485
Score = 26.2 bits (58), Expect = 6.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 186 LVQAGADLLVVGSSF 200
L+QAGAD L+V S F
Sbjct: 365 LIQAGADALLVPSRF 379
>gnl|CDD|132587 TIGR03548, mutarot_permut, cyclically-permuted mutatrotase family
protein. Members of this protein family show
essentially full-length homology, cyclically permuted,
to YjhT from Escherichia coli. YjhT was shown to act as
a mutarotase for sialic acid, and by this ability to be
able to act as a virulence factor. Members of the YjhT
family (TIGR03547) and this cyclically-permuted family
have multiple repeats of the beta-propeller-forming
Kelch repeat.
Length = 323
Score = 26.3 bits (58), Expect = 7.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 189 AGADLLVVGSSFFNQKGEISYAKRLNDL 216
GA LL+ G++ F+ GE+ R D+
Sbjct: 295 CGAALLLTGNNIFSINGELKPGVRTPDI 322
>gnl|CDD|182257 PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase;
Provisional.
Length = 267
Score = 26.1 bits (57), Expect = 7.5
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 92 HPESSPHIRRSLRTIHAMGKKTG-VAINPE 120
HPE I S+R I A GK G +A++P+
Sbjct: 192 HPEVQRIIETSIRRIRAAGKAAGFLAVDPD 221
>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 479
Score = 26.0 bits (58), Expect = 7.9
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 147 GQQLIESTIPKIRQAKALIGKRSISLEVDGG-VTSRNIKSLVQAGADLLVVG 197
G Q E + +R +AL I V G VT+ + LV+AGAD++ VG
Sbjct: 250 GHQ--EKMLEALRAVRALDPGVPI---VAGNVVTAEGTRDLVEAGADIVKVG 296
>gnl|CDD|178363 PLN02763, PLN02763, hydrolase, hydrolyzing O-glycosyl compounds.
Length = 978
Score = 26.0 bits (57), Expect = 8.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 75 DSHINIIADAGCDIITFHPESSP 97
+S I IIA A +ITF P SP
Sbjct: 144 ESIIRIIAPASYPVITFGPFPSP 166
>gnl|CDD|180985 PRK07455, PRK07455,
keto-hydroxyglutarate-aldolase/keto-deoxy-
phosphogluconate aldolase; Provisional.
Length = 187
Score = 25.8 bits (57), Expect = 8.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 169 SISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204
I L GGVT N ++ +QAGA + + F ++
Sbjct: 152 HIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFPKE 187
>gnl|CDD|162966 TIGR02666, moaA, molybdenum cofactor biosynthesis protein A,
bacterial. The model for this family describes
molybdenum cofactor biosynthesis protein A, or MoaA, as
found in bacteria. It does not include the family of
probable functional equivalent proteins from the
archaea. MoaA works together with MoaC to synthesize
precursor Z from guanine.
Length = 334
Score = 26.0 bits (58), Expect = 8.8
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 146 GGQQLIESTIPK-IRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGAD 192
GG+ L+ + + + + AL G I+L +G + +R+ K L +AG
Sbjct: 67 GGEPLLRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLK 114
>gnl|CDD|180667 PRK06718, PRK06718, precorrin-2 dehydrogenase; Reviewed.
Length = 202
Score = 25.8 bits (57), Expect = 9.0
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 174 VDGG-VTSRNIKSLVQAGADLLVVGSSF------FNQKGEISYAKRL---NDLKKSALAI 223
V GG V R +L++ GA ++V+ ++G+I + ++ +D+ + L I
Sbjct: 16 VGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVI 75
>gnl|CDD|148572 pfam07034, ORC3_N, Origin recognition complex (ORC) subunit 3
N-terminus. This family represents the N-terminus
(approximately 300 residues) of subunit 3 of the
eukaryotic origin recognition complex (ORC). Origin
recognition complex (ORC) is composed of six subunits
that are essential for cell viability. They collectively
bind to the autonomously replicating sequence (ARS) in a
sequence-specific manner and lead to the chromatin
loading of other replication factors that are essential
for initiation of DNA replication.
Length = 313
Score = 25.8 bits (57), Expect = 9.0
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 13/66 (19%)
Query: 67 CHLMISSIDSHINIIADAGC-----DIITFHPESSPHIRRSLRTIHAMGKKTGVAIN-PE 120
+ I SHI + D ++ F IR S + + + T + E
Sbjct: 35 YQRLWEKIKSHIERLQDESNAKIFDQLLDF-------IRESHASRQSEARDTESEMRARE 87
Query: 121 TPVAIL 126
P A L
Sbjct: 88 IPTAAL 93
>gnl|CDD|177932 PLN02295, PLN02295, glycerol kinase.
Length = 512
Score = 25.8 bits (57), Expect = 9.2
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 172 LEVDGGVTSRNIKSLVQAGADLL 194
L VDGG T+ N+ L+Q ADLL
Sbjct: 416 LRVDGGATANNL--LMQIQADLL 436
>gnl|CDD|180898 PRK07232, PRK07232, bifunctional malic enzyme
oxidoreductase/phosphotransacetylase; Reviewed.
Length = 752
Score = 25.8 bits (58), Expect = 10.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 157 KIRQAKALIGKRSISLEVDG 176
K+R+A L+ +R+ LEVDG
Sbjct: 644 KMREAVELLRERAPDLEVDG 663
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.137 0.383
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,677,263
Number of extensions: 236588
Number of successful extensions: 661
Number of sequences better than 10.0: 1
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 75
Length of query: 224
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,049,753
Effective search space: 542666902
Effective search space used: 542666902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)